RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4441
(249 letters)
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 32.9 bits (75), Expect = 0.008
Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 68 SDRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAED 127
+D + + L+ + + + K+G + + + + A+V + + +
Sbjct: 9 TDPRSMNSRVFIGNLNTLVVKK---SDVEAIFSKYGKI---VGCSVHKGFAFVQYVNERN 62
Query: 128 ARDAKHSKPRIILYDKVAVVDPVYETHASRSRPRS 162
AR A + ++ +V ++ E +RS P S
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRSGPSS 97
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 31.5 bits (71), Expect = 0.033
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDLS--IRLSHDLDERVAYVCFRSAEDA 128
P ++L + L K + E +Y + K+G + + AYV + DA
Sbjct: 4 PEVNRILYIRNLPYKITAE----EMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDA 59
Query: 129 RDAKHSKPRIILYDKVAVVDPVYETHASRSRPRSR 163
++A + ++ VV A + +
Sbjct: 60 KNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKK 94
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 30.3 bits (68), Expect = 0.040
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Query: 77 LCVSALHPKASDELIKDTLYREYKKFGDLSI-RLSHDLDERVAYVCFRSAEDARDAKHSK 135
L VS L SD I++ L+ E+ ++ A V F DA A
Sbjct: 3 LLVSNLDFGVSDADIQE-LFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 61
Query: 136 PRIILYDKVAVVD 148
+ L + +
Sbjct: 62 NGVPLDGRPMNIQ 74
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 30.5 bits (68), Expect = 0.055
Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 7/96 (7%)
Query: 77 LCVSALHPKA-SDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHSK 135
L + S+ + ++ + + + + F + A DA+
Sbjct: 8 LIACVANDDVFSESETRAKFESLFRTYDKD-TTFQYFKSFKRVRINFSNPLSAADARLRL 66
Query: 136 PRIILYDKVAVVDPVYETHASRSRPRSRSYSPPPPE 171
+ K + A S +PP P+
Sbjct: 67 HKTEFLGK-----EMKLYFAQTLHIGSSHLAPPNPD 97
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 29.9 bits (67), Expect = 0.073
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 77 LCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDE-----RVAYVCFRSAEDARDA 131
L V+ L +D+ L + K+G + + VA+V + E+A++A
Sbjct: 9 LYVTNLPRTITDD----QLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 64
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal
domain {Moorella thermoacetica [TaxId: 1525]}
Length = 249
Score = 31.1 bits (69), Expect = 0.098
Identities = 22/121 (18%), Positives = 35/121 (28%), Gaps = 9/121 (7%)
Query: 138 IILYDKVAVVDPVYETHASRSRPRSRSYSPPPP---------EYDRYYSRSPVLERRPGL 188
+I+ DK A+VD VYE + + P E D + ++E P
Sbjct: 40 LIVDDKTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMELCPDA 99
Query: 189 PPPLPHPGERPYGYGPPVLRHEFRRDIPPHHVVLPHHEFLPRGPPLHHIPPHHPTYLKQE 248
+ + V L P+ H P TY+ +E
Sbjct: 100 HVLCTQRAFDSLKAHYSHIDFNYTIVKTGTSVSLGKRSLTFIEAPMLHWPDSMFTYVPEE 159
Query: 249 N 249
Sbjct: 160 A 160
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 29.2 bits (65), Expect = 0.13
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 77 LCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHSKP 136
L V L P ++E + + ++K+G + + D+ ++ + A AK
Sbjct: 11 LFVGNLPPDITEE----EMRKLFEKYGK-AGEVFIHKDKGFGFIRLETRTLAEIAKVELD 65
Query: 137 RIILYDKVAVVD 148
+ L K V
Sbjct: 66 NMPLRGKQLRVR 77
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 28.3 bits (63), Expect = 0.20
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 77 LCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLD--ERVAYVCFRSAEDARDAKHS 134
L V LHP ++ ++ + + + + AYV F+ DA A +
Sbjct: 3 LYVGDLHPDVTEAMLYE-KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 135 KPRIILYDKVAVVDP 149
++ K +
Sbjct: 62 MNFDVIKGKPVRIMW 76
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 28.6 bits (63), Expect = 0.21
Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 77 LCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDER-VAYVCFRSAEDARDAKHSK 135
L V L +++ ++ + + + ++ R +V F + +DA+DA +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 136 PRIILYDKVAVVDPVYETHASRS 158
+ + VD ++ +RS
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRS 90
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 27.2 bits (60), Expect = 0.49
Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 9/75 (12%)
Query: 77 LCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDE-----RVAYVCFRSAEDARDA 131
+ V L P +E + + FG++ ++ ++ F+ E +
Sbjct: 2 IFVGGLSPDTPEE----KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 57
Query: 132 KHSKPRIILYDKVAV 146
K + K +
Sbjct: 58 MEKKYHNVGLSKCEI 72
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 26.8 bits (59), Expect = 0.95
Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 67 VSDRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDER---VAYVCFR 123
V + + K + V + +A+ I++ L+ + + + + +V F
Sbjct: 2 VPKKQTTSK-ILVRNIPFQANQREIRE-LFSTFGELKTVRLPKKMTGTGAHRGFGFVDFI 59
Query: 124 SAEDARDA 131
+ +DA+ A
Sbjct: 60 TKQDAKKA 67
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 26.8 bits (59), Expect = 0.95
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 91 IKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148
I++ L E KFG + + L + VA V FR E+A + +
Sbjct: 32 IREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQ 90
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 26.5 bits (58), Expect = 1.4
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 15/94 (15%)
Query: 77 LCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHD-----LDERVAYVCFRSAEDARDA 131
L V L ++E +Y + K GD+ + +V + S DA +A
Sbjct: 10 LYVGNLSFYTTEE----QIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENA 65
Query: 132 KHSKPRIILYDKVAVVDPVYETHASRSRPRSRSY 165
L D++ D R Y
Sbjct: 66 MRYINGTRLDDRIIRTD------WDAGFKEGRQY 93
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 25.9 bits (56), Expect = 2.1
Identities = 11/57 (19%), Positives = 22/57 (38%)
Query: 75 KVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDA 131
+ + + A+ + IK+ L + + R H + +V F S E A+
Sbjct: 7 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKF 63
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 25.4 bits (55), Expect = 2.7
Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 2/88 (2%)
Query: 77 LCVSALHPKASDELIKDTLYRE-YKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHSK 135
L V L +S+E ++ I + A+V F E A A
Sbjct: 11 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 70
Query: 136 PRIILYDKVAVVDP-VYETHASRSRPRS 162
+ ++ V P + AS+S P S
Sbjct: 71 DGQVFQGRMLHVLPSTIKKEASQSGPSS 98
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 25.4 bits (55), Expect = 3.1
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDER-VAYVCFRSAEDARDA 131
++K L + L +D+ +K+ L ++ S + A+ + A
Sbjct: 1 AHK-LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 59
Query: 132 KHSKPRIILYDKVAVVDPVYETHASRSRPRSRS 164
+ L DK +V R+ +++
Sbjct: 60 IAGLNGMQLGDKKLLVQ--------RASVGAKN 84
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 25.0 bits (54), Expect = 3.7
Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 14/93 (15%)
Query: 77 LCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHSKP 136
+ V +++ L + ++GD+ A+V F + A+
Sbjct: 8 VFVGRCTGDMTED----ELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGED- 62
Query: 137 RIILYDKVAVVDPVYETHASRSRPRSRSYSPPP 169
+I+ + + P+ S S P
Sbjct: 63 -LIIKGISVHIS--------NAEPKHNSNSGPS 86
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO),
N-terminal domain {Desulfovibrio gigas [TaxId: 879]}
Length = 249
Score = 25.3 bits (54), Expect = 6.6
Identities = 13/121 (10%), Positives = 28/121 (23%), Gaps = 9/121 (7%)
Query: 138 IILYDKVAVVDPVYETHASRSRPRSRSYSPPPP---------EYDRYYSRSPVLERRPGL 188
++ +K + D V + S P E D + ++E
Sbjct: 38 LVEDEKTTLFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGALPALIEACQPE 97
Query: 189 PPPLPHPGERPYGYGPPVLRHEFRRDIPPHHVVLPHHEFLPRGPPLHHIPPHHPTYLKQE 248
G++ + + L + H P ++ E
Sbjct: 98 KIFTSSLGQKAMESHFHYKDWPVQVVKHGETLSLGKRTVTFYETRMLHWPDSMVSWFADE 157
Query: 249 N 249
Sbjct: 158 K 158
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 24.2 bits (52), Expect = 8.2
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 14/77 (18%)
Query: 71 PPSYKVLCVS------ALHPKASDELIKDTLYREYKKF-GDLSIRLSHDLDER------V 117
P+ +VLC+ L E I + + E K+ SI + +D
Sbjct: 2 HPT-EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGK 60
Query: 118 AYVCFRSAEDARDAKHS 134
+V F S D + A
Sbjct: 61 IFVEFTSVFDCQKAMQG 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.138 0.430
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,035,709
Number of extensions: 53049
Number of successful extensions: 162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 28
Length of query: 249
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,268,006
Effective search space: 210488996
Effective search space used: 210488996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.2 bits)