BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4442
(655 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LW3|A Chain A, Crystal Structure Of Myotubularin-Related Protein 2
Complexed With Phosphate
pdb|1M7R|A Chain A, Crystal Structure Of Myotubularin-Related Protein-2
(Mtmr2) Complexed With Phosphate
pdb|1M7R|B Chain B, Crystal Structure Of Myotubularin-Related Protein-2
(Mtmr2) Complexed With Phosphate
Length = 657
Score = 227 bits (579), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 169/298 (56%), Gaps = 10/298 (3%)
Query: 365 WRQCSANQNYELCETYPKYVIVPSGIDDGLLKSSADFRSNQRFPVVVWRHQKNGAVIARS 424
WR N+ YELC+TYP ++VP+ I D LK A FRS R PV+ W H ++ A I R
Sbjct: 228 WRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQATITRC 287
Query: 425 SQPQVGVLGWRKKEDEMLLEQITKAGSGGDESSKRFDRENWNRYDLIVPKAKKEGIGESQ 484
SQP VGV G R KEDE L+ I + + +S K F + + + KAK G
Sbjct: 288 SQPMVGVSGKRSKEDEKYLQAIMDSNA---QSHKIFIFDARPSVNAVANKAKGGGYESED 344
Query: 485 PFRERTLPGKD----EIRSGWWKAVDGTSWRAPSNTSWWKAVDGTSWLQNMHLLLVSAVN 540
++ L D + + + + T W ++ T WL+++ L+L A+
Sbjct: 345 AYQNAELVFLDIHNIHVMRESLRKLKEIVYPNIEETHWLSNLESTHWLEHIKLILAGALR 404
Query: 541 LAATIELESRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQVLVEREWLEFGHKFD 600
+A +E SV+VH SDGWDRT QL SLA ++LD YYRT++GF+VLVE+EWL FGH+F
Sbjct: 405 IADKVESGKTSVVVHSSDGWDRTAQLTSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQ 464
Query: 601 DRCGRNDKS---SERSPVFLQWLDCVYQLLTQFPTEFQFNSMFLFPTEFQFNSMFLGS 655
R G DK+ ++RSPVFLQ++DCV+Q+ QFPT F+FN FL S G+
Sbjct: 465 LRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGT 522
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 26 NAALFVKLAQHTYANLFGTFLCNSSKDREDKMVTSQTFSVWKFLN----------HGSYR 75
N + + H Y+ LFGTFLCNS + R + + +T S+W ++N +GSY
Sbjct: 504 NEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYGSYS 563
Query: 76 NHL 78
NH+
Sbjct: 564 NHV 566
>pdb|1ZSQ|A Chain A, Crystal Structure Of Mtmr2 In Complex With
Phosphatidylinositol 3-Phosphate
pdb|1ZVR|A Chain A, Crystal Structure Of Mtmr2 In Complex With
Phosphatidylinositol 3,5-Bisphosphate
Length = 528
Score = 226 bits (577), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 169/298 (56%), Gaps = 10/298 (3%)
Query: 365 WRQCSANQNYELCETYPKYVIVPSGIDDGLLKSSADFRSNQRFPVVVWRHQKNGAVIARS 424
WR N+ YELC+TYP ++VP+ I D LK A FRS R PV+ W H ++ A I R
Sbjct: 156 WRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQATITRC 215
Query: 425 SQPQVGVLGWRKKEDEMLLEQITKAGSGGDESSKRFDRENWNRYDLIVPKAKKEGIGESQ 484
SQP VGV G R KEDE L+ I + + +S K F + + + KAK G
Sbjct: 216 SQPMVGVSGKRSKEDEKYLQAIMDSNA---QSHKIFIFDARPSVNAVANKAKGGGYESED 272
Query: 485 PFRERTLPGKD----EIRSGWWKAVDGTSWRAPSNTSWWKAVDGTSWLQNMHLLLVSAVN 540
++ L D + + + + T W ++ T WL+++ L+L A+
Sbjct: 273 AYQNAELVFLDIHNIHVMRESLRKLKEIVYPNIEETHWLSNLESTHWLEHIKLILAGALR 332
Query: 541 LAATIELESRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQVLVEREWLEFGHKFD 600
+A +E SV+VH SDGWDRT QL SLA ++LD YYRT++GF+VLVE+EWL FGH+F
Sbjct: 333 IADKVESGKTSVVVHSSDGWDRTAQLTSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQ 392
Query: 601 DRCGRNDKS---SERSPVFLQWLDCVYQLLTQFPTEFQFNSMFLFPTEFQFNSMFLGS 655
R G DK+ ++RSPVFLQ++DCV+Q+ QFPT F+FN FL S G+
Sbjct: 393 LRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGT 450
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 26 NAALFVKLAQHTYANLFGTFLCNSSKDREDKMVTSQTFSVWKFLN----------HGSYR 75
N + + H Y+ LFGTFLCNS + R + + +T S+W ++N +GSY
Sbjct: 432 NEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYGSYS 491
Query: 76 NHL 78
NH+
Sbjct: 492 NHV 494
>pdb|2YF0|A Chain A, Human Myotubularin Related Protein 6 (Mtmr6)
Length = 512
Score = 202 bits (513), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 173/310 (55%), Gaps = 12/310 (3%)
Query: 352 EWERMKFDEAPVRWRQCSANQNYELCETYPKYVIVPSGIDDGLLKSSADFRSNQRFPVVV 411
E++RM + W+ AN++Y++CETYP+ + VP ++ S+ FRS RFPV+
Sbjct: 133 EYKRMGVPNS--HWQLSDANRDYKICETYPRELYVPRIASKPIIVGSSKFRSKGRFPVLS 190
Query: 412 WRHQKNGAVIARSSQPQVGVLGWRKKEDEMLLEQITKAGSGGDESSKRFDRENWNRYDLI 471
+ HQ A I R SQP G R EDE LL+ I+KA + + + + + +
Sbjct: 191 YYHQDKEAAICRCSQPLSG-FSARCLEDEHLLQAISKANPV---NRYMYVMDTRPKLNAM 246
Query: 472 VPKAKKEGIGESQP-----FRERTLPGKDEIRSGWWKAVDGTSWRAPSNTSWWKAVDGTS 526
+A +G F+ + +RS K ++ + S ++ ++ +
Sbjct: 247 ANRAAGKGYENEDNYSNIRFQFVGIENIHVMRSSLQKLLEVNGTKGLSVNDFYSGLESSG 306
Query: 527 WLQNMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQV 586
WL+++ ++ +AV LA I +E+ SVLVHCSDGWDRT Q+ SL +LLD YYRT+KGF V
Sbjct: 307 WLRHIKAVMDAAVFLAKAITVENASVLVHCSDGWDRTSQVCSLGSLLLDSYYRTIKGFMV 366
Query: 587 LVEREWLEFGHKFDDRCGRNDKS-SERSPVFLQWLDCVYQLLTQFPTEFQFNSMFLFPTE 645
L+E++W+ FGHKF +RCG+ D E SPVF Q+L+CV+ L QFP F+F+ FL
Sbjct: 367 LIEKDWISFGHKFSERCGQLDGDPKEVSPVFTQFLECVWHLTEQFPQAFEFSEAFLLQIH 426
Query: 646 FQFNSMFLGS 655
+S G+
Sbjct: 427 EHIHSCQFGN 436
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 28 ALFVKLAQHTYANLFGTFLCNSSKDREDKMVTSQTFSVWKFL--NHGSYRNHLYN 80
A +++ +H ++ FG FL N K+RE+ + +T+S+W FL + Y N LY+
Sbjct: 420 AFLLQIHEHIHSCQFGNFLGNCQKEREELKLKEKTYSLWPFLLEDQKKYLNPLYS 474
>pdb|2B49|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase, Non-Receptor Type 3
Length = 287
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 539 VNLAATIELESRSVLVHCSDGWDRTPQLVSL 569
VN ++ ++S VLVHCS G RT LV++
Sbjct: 199 VNYVRSLRVDSEPVLVHCSAGIGRTGVLVTM 229
>pdb|3UA4|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5
pdb|3UA4|B Chain B, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5
Length = 745
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 312 TFKRGTRSKEVRLYLVYQGPFQCVRLTYRSV 342
TF++G S +V+LY+V + P V L Y +V
Sbjct: 437 TFRQGQESLKVKLYIVEKNPNAIVTLKYMNV 467
>pdb|3UA3|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5 In Complex With Sah
pdb|3UA3|B Chain B, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5 In Complex With Sah
Length = 745
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 312 TFKRGTRSKEVRLYLVYQGPFQCVRLTYRSV 342
TF++G S +V+LY+V + P V L Y +V
Sbjct: 437 TFRQGQESLKVKLYIVEKNPNAIVTLKYXNV 467
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,905,071
Number of Sequences: 62578
Number of extensions: 923193
Number of successful extensions: 1807
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1790
Number of HSP's gapped (non-prelim): 12
length of query: 655
length of database: 14,973,337
effective HSP length: 105
effective length of query: 550
effective length of database: 8,402,647
effective search space: 4621455850
effective search space used: 4621455850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)