Query psy4442
Match_columns 655
No_of_seqs 289 out of 855
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 17:09:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4471|consensus 100.0 4E-135 8E-140 1099.4 28.9 443 91-655 7-483 (717)
2 PF06602 Myotub-related: Myotu 100.0 6.8E-96 1E-100 781.9 24.8 296 345-655 22-341 (353)
3 KOG1089|consensus 100.0 1.5E-95 3E-100 800.7 23.1 297 345-655 138-454 (573)
4 KOG1090|consensus 100.0 2.2E-58 4.8E-63 516.3 12.4 297 351-655 1000-1376(1732)
5 KOG4471|consensus 99.9 1.9E-27 4.2E-32 260.3 3.1 128 11-142 449-584 (717)
6 KOG1089|consensus 99.8 9.1E-22 2E-26 218.3 3.8 95 9-107 418-519 (573)
7 KOG1090|consensus 99.5 2E-14 4.4E-19 164.4 2.8 105 11-118 1342-1472(1732)
8 smart00404 PTPc_motif Protein 96.6 0.0058 1.2E-07 52.8 6.4 60 549-642 39-98 (105)
9 smart00012 PTPc_DSPc Protein t 96.6 0.0058 1.2E-07 52.8 6.4 60 549-642 39-98 (105)
10 PF13350 Y_phosphatase3: Tyros 94.7 0.043 9.3E-07 53.0 4.8 28 548-575 123-150 (164)
11 smart00195 DSPc Dual specifici 92.9 0.17 3.7E-06 46.8 5.2 33 536-568 65-97 (138)
12 cd00127 DSPc Dual specificity 92.5 0.26 5.7E-06 45.2 5.7 31 538-568 70-100 (139)
13 PF00782 DSPc: Dual specificit 90.5 0.37 7.9E-06 44.2 4.4 23 546-568 70-92 (133)
14 PF03162 Y_phosphatase2: Tyros 89.6 0.36 7.7E-06 47.4 3.8 61 527-597 71-132 (164)
15 COG2365 Protein tyrosine/serin 88.6 0.9 1.9E-05 47.4 6.1 42 549-597 136-177 (249)
16 PTZ00393 protein tyrosine phos 81.8 2.5 5.3E-05 44.3 5.4 24 547-570 168-191 (241)
17 PTZ00242 protein tyrosine phos 81.1 3.3 7.2E-05 40.6 5.8 23 548-570 97-119 (166)
18 smart00194 PTPc Protein tyrosi 80.5 2.5 5.5E-05 43.4 5.0 25 549-573 193-217 (258)
19 cd00047 PTPc Protein tyrosine 80.2 2.3 5E-05 42.9 4.6 26 548-573 165-190 (231)
20 PF05706 CDKN3: Cyclin-depende 79.5 4 8.6E-05 40.7 5.7 37 538-575 123-159 (168)
21 PF00102 Y_phosphatase: Protei 79.4 3.1 6.6E-05 41.2 5.1 27 546-572 167-193 (235)
22 PHA02742 protein tyrosine phos 77.5 3 6.5E-05 44.7 4.6 24 549-572 229-252 (303)
23 COG5599 PTP2 Protein tyrosine 75.7 2.4 5.2E-05 45.1 3.1 30 548-577 217-246 (302)
24 TIGR01244 conserved hypothetic 72.0 5.6 0.00012 37.6 4.4 31 543-574 80-110 (135)
25 PHA02740 protein tyrosine phos 70.4 8.6 0.00019 41.3 5.9 22 549-570 221-242 (298)
26 PHA02746 protein tyrosine phos 70.3 7.7 0.00017 42.0 5.6 23 550-572 248-270 (323)
27 COG2453 CDC14 Predicted protei 69.8 15 0.00033 36.3 7.1 35 533-568 90-124 (180)
28 KOG0793|consensus 67.8 4.2 9.2E-05 48.1 3.1 44 530-573 908-951 (1004)
29 PHA02747 protein tyrosine phos 65.3 5 0.00011 43.2 2.9 24 550-573 230-253 (312)
30 PHA02738 hypothetical protein; 64.9 9.7 0.00021 41.2 5.0 24 549-572 227-250 (320)
31 PF04273 DUF442: Putative phos 60.5 11 0.00023 34.8 3.8 33 540-573 77-109 (110)
32 PRK12361 hypothetical protein; 60.3 21 0.00046 41.2 7.0 33 536-568 162-194 (547)
33 KOG2433|consensus 54.8 9 0.00019 42.9 2.6 103 489-595 430-554 (577)
34 PF02893 GRAM: GRAM domain; I 52.1 18 0.00038 29.8 3.4 39 133-173 29-68 (69)
35 KOG1719|consensus 46.9 26 0.00056 34.9 4.1 30 538-567 98-127 (183)
36 KOG0789|consensus 44.9 48 0.001 36.2 6.4 23 548-570 298-320 (415)
37 smart00568 GRAM domain in gluc 43.7 20 0.00044 28.7 2.5 39 133-173 21-60 (61)
38 PF14566 PTPlike_phytase: Inos 43.7 29 0.00063 33.4 3.9 39 534-573 110-148 (149)
39 KOG2836|consensus 42.8 22 0.00048 34.6 2.9 30 546-575 94-123 (173)
40 KOG1716|consensus 40.1 53 0.0011 34.9 5.6 30 538-567 144-173 (285)
41 KOG0792|consensus 39.7 24 0.00052 43.9 3.2 43 524-567 1033-1081(1144)
42 KOG1717|consensus 36.9 51 0.0011 35.5 4.7 43 525-567 227-269 (343)
43 PLN02727 NAD kinase 31.0 52 0.0011 40.8 4.1 32 538-569 329-361 (986)
44 KOG1572|consensus 29.7 48 0.001 35.0 3.1 41 527-569 128-168 (249)
45 KOG0791|consensus 28.4 70 0.0015 35.7 4.2 44 531-574 269-312 (374)
46 PF15581 Imm35: Immunity prote 27.3 35 0.00075 30.7 1.4 22 574-595 25-46 (93)
47 PF04179 Init_tRNA_PT: Initiat 25.7 1.2E+02 0.0026 34.8 5.7 44 530-574 355-400 (451)
48 PF09954 DUF2188: Uncharacteri 24.5 65 0.0014 26.3 2.5 47 514-560 7-55 (62)
49 KOG1718|consensus 24.3 1.8E+02 0.0039 29.6 5.8 60 538-598 83-159 (198)
50 KOG1720|consensus 23.6 1.2E+02 0.0026 31.7 4.6 30 538-568 137-166 (225)
51 PRK15375 pathogenicity island 22.6 1E+02 0.0022 36.0 4.4 23 552-575 469-491 (535)
No 1
>KOG4471|consensus
Probab=100.00 E-value=3.6e-135 Score=1099.42 Aligned_cols=443 Identities=41% Similarity=0.690 Sum_probs=412.0
Q ss_pred cccCCCCccccCCCCCCcccCCCCCCCcccccccccc-------hhccccccceEeecccccccccccCCCCCCceeecc
Q psy4442 91 KVLGTMPGIMLYPLREPVYEHKSLVEPSIPKLNGEYY-------DYVGSTVDGKLCLSNYRLCHQDNNGSNASITFFNIP 163 (655)
Q Consensus 91 ~P~~svq~leLWp~~~p~~e~~~l~~pf~~eL~gE~~-------e~~~r~~d~~lalSnyrl~l~~~~~~~~~~~~~~vP 163 (655)
..++.+++.+.+|...++++++++++|| ++|.||++ .|+| +++|+|+|||||||++. ..+.+..+++||
T Consensus 7 ~s~~~~~~~~s~~~t~~~~~~~~~~~~~-~~L~GE~i~~~~y~c~f~G-~~~g~l~lsNyRl~fks--~~t~~~~~~~VP 82 (717)
T KOG4471|consen 7 SSNSFIQANDSFPRTSLDKEDENLQVPF-PLLPGESIIDEKYICPFLG-AVDGTLALSNYRLYFKS--KETDPPFVLDVP 82 (717)
T ss_pred CcchhhhhhhccCchhcccccccccCcc-cccCCcccccceecccccc-cccceEEeeeeEEEEEe--ccCCCceeEeec
Confidence 3455567788889888999999999999 99999999 9999 99999999999999999 445566799999
Q ss_pred ccceeeeeeee-------eeEEEEEecCCcccccCCCCCCCCCCCccceeeeecccCCCCCCCCCccccccccccccccc
Q psy4442 164 LGLIENVEIKE-------VHWLQIVCKDVTSCKKGSGLGHVKPRYSSRSHFTVTLMEPSDRRGGGTEHELSSVSYRNVQS 236 (655)
Q Consensus 164 Lg~ie~~e~~d-------~~~l~i~ckd~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (655)
||+||+||+++ .|+|+|+|||+|++ ||+|. +.+||+-
T Consensus 83 Lg~Ie~vek~~~~~~g~ns~~L~i~CKDmr~l---------------R~~fk------------~~~q~r~--------- 126 (717)
T KOG4471|consen 83 LGVIERVEKRGGATSGENSFGLEITCKDMRNL---------------RCAFK------------QEEQCRR--------- 126 (717)
T ss_pred hhhhhhhhhcCccccCCcceeEEEEeccccce---------------eeecC------------cccccHH---------
Confidence 99999999999 99999999999999 99999 9999982
Q ss_pred ccccCCCCCCCCCCCccccccccccccccccccccccccCCCCCCccccccccccccccccchhhHHHHHhhhccccccC
Q psy4442 237 VKTVPYPPCSYRDTSKAEWTTFKQDCTTRILQGEGSKRGKNEPYPRVLYRDTFQSEGHVQKRVTTYLILRMLVQGTFKRG 316 (655)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~fa~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (655)
+|+ +||++.+.||+..+++||| +|++|....++
T Consensus 127 -----------------~~~----------------e~L~~~~~p~~~~~~LFaF---------~~~~~~~~ng~----- 159 (717)
T KOG4471|consen 127 -----------------DWF----------------ERLNRAAFPPAKSEDLFAF---------AYHAWFPVNGS----- 159 (717)
T ss_pred -----------------HHH----------------HHHHHhcCCcccchhhhhc---------ccHhhcCCCCc-----
Confidence 677 9999999999999999999 99999976433
Q ss_pred CchhhhhhhhhccCCcceeeecccCCCCCcCCh--HHHHhHcCCCCCCCCeeEeeccCCcccccCCCCceEecCcCChhH
Q psy4442 317 TRSKEVRLYLVYQGPFQCVRLTYRSVLPTGTRS--TSEWERMKFDEAPVRWRQCSANQNYELCETYPKYVIVPSGIDDGL 394 (655)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~Ef~RlG~~~~~~~WRVS~vN~~Y~lC~SYP~~LVVP~sIsD~~ 394 (655)
+ +..|. ..|++ ..|+.|||++ ...||||.+|++|++|+|||..++||++|+|++
T Consensus 160 -e-~~~~~--------------------~l~~P~~~~E~~r~g~~--n~~WRIs~iNs~Y~LC~SYP~~l~VP~~isD~e 215 (717)
T KOG4471|consen 160 -E-NGQHW--------------------KLYDPMFKNEYRRQGLP--NESWRISKINSNYKLCDSYPAKLVVPKSISDEE 215 (717)
T ss_pred -c-ccccc--------------------cccChhhHhHHHhcCCC--hhheeeecccccccccccCccceEeccccCHHH
Confidence 0 11111 13455 9999999998 569999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCcceEEeeecCCCceEeeccCCcccCCCCCChHhHHHHHHHHHhCCCCCCCCccccccCCCcceeEeec
Q psy4442 395 LKSSADFRSNQRFPVVVWRHQKNGAVIARSSQPQVGVLGWRKKEDEMLLEQITKAGSGGDESSKRFDRENWNRYDLIVPK 474 (655)
Q Consensus 395 L~~vA~FRs~gRfPvlsW~h~~nGAvL~RsSQP~vG~~g~Rs~eDE~lL~aI~~a~~~~~~s~~~~~~~~~~~~l~IvDa 474 (655)
|.++|.||+++|+||++|+||++||+|+|||||+||++|||+++||+||++|+++|..+ ...+|++|+||
T Consensus 216 L~~VasFRsr~RlPvlsw~Hp~sgAvIaRcSQPlVG~~g~Rn~~DEkll~~i~~a~A~~----------~e~~KL~I~DA 285 (717)
T KOG4471|consen 216 LLRVASFRSRCRLPVLSWRHPESGAVIARCSQPLVGWSGKRNKDDEKLLQAIADANAQD----------GERRKLLIVDA 285 (717)
T ss_pred HHHHhhhhhcCccceEEEEcCCCCceEEecCCcccchhcccccchHHHHHHHHHhcccc----------cccceEEEEec
Confidence 99999999999999999999999999999999999999999999999999999998764 12568999999
Q ss_pred -------c-cccCCC-CCC------CccccCCCChHHHHHHHHHHHhcccCCCCCchhhhhcccCCchHHHHHHHHHHHH
Q psy4442 475 -------A-KKEGIG-ESQ------PFRERTLPGKDEIRSGWWKAVDGTSWRAPSNTSWWKAVDGTSWLQNMHLLLVSAV 539 (655)
Q Consensus 475 -------a-ra~G~G-E~~------p~~f~~i~nIh~iR~Sf~~~L~~lc~~~~~~~~wls~Le~s~WL~~V~~lL~~a~ 539 (655)
| +||||| |++ ++.|+||.|||+||+|| ++++++|.+.+++++|++.||+|+||+||+.+|.+|+
T Consensus 286 Rp~~nAvANkAkGGG~Es~~~Y~naEi~Fl~i~NIH~mR~s~-~~~k~~~~~~~d~s~wlS~Le~T~WL~Hi~~lLaga~ 364 (717)
T KOG4471|consen 286 RPYTNAVANKAKGGGYESEEAYPNAEIVFLGIHNIHVMRESL-RKLKEICYPSPDESNWLSALESTHWLEHISSLLAGAV 364 (717)
T ss_pred ccchhhhhccccCCCccChhccccceEEEeecchhHHHHHHH-HhHHHhhcCCCCchhHHHhhccchHHHHHHHHHHHHH
Confidence 4 999999 987 39999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCcEEEEEcCCCCCcchhHHHHHHHHhCccccchhhHHHHHHhHhhhcCCCcccccCCC---CCCCCCCchh
Q psy4442 540 NLAATIELESRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQVLVEREWLEFGHKFDDRCGRN---DKSSERSPVF 616 (655)
Q Consensus 540 ~ia~~l~~~g~sVLVhcsdGwDrT~qisSLaqLllDPyYRTi~GF~~LIeKEWlsfGH~F~~R~gh~---~~~~e~sPvF 616 (655)
.||+.++.+++|||||||||||||+||+||||||||||||||+||++|||||||+|||||++|+||+ +..+++||||
T Consensus 365 ~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlLDpYYRTieGFqvLVEkeWLsFGHkFadRvGhg~ns~~~ndrsPVF 444 (717)
T KOG4471|consen 365 RIADKVESESRSVLVHCSDGWDRTAQLVSLAMLLLDPYYRTIEGFQVLVEKEWLSFGHKFADRVGHGNNSHGDNDRSPVF 444 (717)
T ss_pred HHHHHHhcCCceEEEEcCCCccchHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhcCChhhhhcCCCCCcccccccCchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 5678999999
Q ss_pred hHHHHHHHHHHhhCCCCccCCccchHHHHHhhccCCCCC
Q psy4442 617 LQWLDCVYQLLTQFPTEFQFNSMFLFPTEFQFNSMFLGS 655 (655)
Q Consensus 617 lqFLDCV~QL~~QfP~aFEFne~fL~~L~~h~yS~~FGt 655 (655)
||||||||||++|||++|||||.||+.|++|+|||+|||
T Consensus 445 LQwlDcV~Ql~rqfP~aFEFne~fLi~i~dh~ySClFGT 483 (717)
T KOG4471|consen 445 LQWLDCVWQLMRQFPCAFEFNEAFLIKIVDHLYSCLFGT 483 (717)
T ss_pred HHHHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999998
No 2
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=100.00 E-value=6.8e-96 Score=781.91 Aligned_cols=296 Identities=47% Similarity=0.806 Sum_probs=236.9
Q ss_pred CcCChHHHHhHcCCCCCCCCeeEeeccCCcccccCCCCceEecCcCChhHHHHHHhhhcCCCcceEEeeecCCCceEeec
Q psy4442 345 TGTRSTSEWERMKFDEAPVRWRQCSANQNYELCETYPKYVIVPSGIDDGLLKSSADFRSNQRFPVVVWRHQKNGAVIARS 424 (655)
Q Consensus 345 ~~~d~~~Ef~RlG~~~~~~~WRVS~vN~~Y~lC~SYP~~LVVP~sIsD~~L~~vA~FRs~gRfPvlsW~h~~nGAvL~Rs 424 (655)
..+|+..||+|||++ ....|||+.+|++|++|+|||..+|||++++|++|.++|+||+++|||||+|+|+.|||+|+||
T Consensus 22 ~~~d~~~E~~R~g~~-~~~~Wri~~~N~~y~~c~tYP~~lvVP~~i~D~~l~~~a~~r~~~R~Pv~~W~~~~~~a~L~Rs 100 (353)
T PF06602_consen 22 KIYDWEREFERLGLP-SDSSWRISDINSNYELCPTYPSLLVVPSSISDEELKKSAKFRSKGRFPVLSWRHPENGAVLLRS 100 (353)
T ss_dssp CT--HHHHHHHTT-S-CSS-EEEEGCCTTSSS-TTS-SSEEEETTS-HHHHHHHHHHBGGG---EEEEE-TTT--EEEEE
T ss_pred cccCHHHHHHHhCCC-CCCCeeEEEEcCCCCccccccceEEEEEEecHHHHHHhhhhccCCccceEEEeecCCCeEEEEe
Confidence 368999999999998 3334999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCCCChHhHHHHHHHH---HhCCCCCCCCccccccCCCcceeEeec-------c-cccCCC-CCC---C---c
Q psy4442 425 SQPQVGVLGWRKKEDEMLLEQIT---KAGSGGDESSKRFDRENWNRYDLIVPK-------A-KKEGIG-ESQ---P---F 486 (655)
Q Consensus 425 SQP~vG~~g~Rs~eDE~lL~aI~---~a~~~~~~s~~~~~~~~~~~~l~IvDa-------a-ra~G~G-E~~---p---~ 486 (655)
|||.+|+.++|+.+||++|.++. +.+ ...++++|+|+ | +++|+| |.+ | +
T Consensus 101 sqp~~g~~~~r~~~De~ll~~~i~~~~~~-------------~~~~~~~i~D~R~~~~a~~n~~~G~G~E~~~~Y~~~~i 167 (353)
T PF06602_consen 101 SQPLVGLSNSRSKEDEKLLQAAISSSKSN-------------PSKSKLVIVDARPKLNALANRAKGGGYENESNYPNCEI 167 (353)
T ss_dssp E-B--TTTT---HHHHHHH-HHH--HHHS-------------TT-SSEEEEE-SSCHHHHHHHHTT-S---TTTSTTEEE
T ss_pred ccccccccccCchhhHHHHHHHHhhcccc-------------cccCceEEEcchhhhhhhhhhhhccCCccccccccceE
Confidence 99999999999999999995544 222 23567899998 3 889999 866 2 9
Q ss_pred cccCCCChHHHHHHHHHHHhccc--CCCCCchhhhhcccCCchHHHHHHHHHHHHHHHHHhhhcCcEEEEEcCCCCCcch
Q psy4442 487 RERTLPGKDEIRSGWWKAVDGTS--WRAPSNTSWWKAVDGTSWLQNMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTP 564 (655)
Q Consensus 487 ~f~~i~nIh~iR~Sf~~~L~~lc--~~~~~~~~wls~Le~s~WL~~V~~lL~~a~~ia~~l~~~g~sVLVhcsdGwDrT~ 564 (655)
+|++|+|||+||+|| ++|+++| ....++.+|++.||+|+||++|+.+|++|..||++|+.+|.+|||||+||||||+
T Consensus 168 ~fl~i~nih~vr~s~-~kl~~~~~~~~~~~~~~~~~~le~s~Wl~~v~~~L~~a~~i~~~l~~~~~~Vlvh~~dGwDrt~ 246 (353)
T PF06602_consen 168 IFLNIPNIHSVRDSF-QKLRELCSNTNSDNDDSWLSSLESSNWLDHVRSILSGASRIADLLHDEGSSVLVHCSDGWDRTS 246 (353)
T ss_dssp EE-----HHHHHHHH-HHHHHHH-SSSS--HHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHTT--EEEEECTTSSSHHH
T ss_pred EeeecCcHHHHHHHH-HHHHHHhcccccCCchhhhhccccCChHHHHHHHHHHHHHHHHHhhccCceEEEEcCCCCcccH
Confidence 999999999999999 8999999 3334678999999999999999999999999999998899999999999999999
Q ss_pred hHHHHHHHHhCccccchhhHHHHHHhHhhhcCCCcccccCCC----CCCCCCCchhhHHHHHHHHHHhhCCCCccCCccc
Q psy4442 565 QLVSLAEILLDPYYRTVKGFQVLVEREWLEFGHKFDDRCGRN----DKSSERSPVFLQWLDCVYQLLTQFPTEFQFNSMF 640 (655)
Q Consensus 565 qisSLaqLllDPyYRTi~GF~~LIeKEWlsfGH~F~~R~gh~----~~~~e~sPvFlqFLDCV~QL~~QfP~aFEFne~f 640 (655)
||+||||||||||||||+||++||||||++|||||++|+||+ .+.+++||||+|||||||||++|||++|||||.|
T Consensus 247 q~~sL~ql~lDpyyRTi~GF~~LIeKeW~~fGH~F~~R~~~~~~~~~~~~~~sPvFl~FLDcV~ql~~q~P~~FEFne~~ 326 (353)
T PF06602_consen 247 QLSSLAQLLLDPYYRTIEGFQVLIEKEWISFGHPFADRCGHGSSSSSSSSERSPVFLQFLDCVWQLLRQFPTAFEFNESL 326 (353)
T ss_dssp HHHHHHHHHH-CGGGSHHHHHHHHHHHTTTTT--HHHHHTTT--SSTTGCC---HHHHHHHHHHHHHHHSTTT-SB-HHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCcchhhhcCCcccccccccccccchhHHHHHHHHHHHhCCCceecCHHH
Confidence 999999999999999999999999999999999999999998 5678999999999999999999999999999999
Q ss_pred hHHHHHhhccCCCCC
Q psy4442 641 LFPTEFQFNSMFLGS 655 (655)
Q Consensus 641 L~~L~~h~yS~~FGt 655 (655)
|++|++|+|||+|||
T Consensus 327 L~~l~~~~~s~~fgt 341 (353)
T PF06602_consen 327 LIFLADHSYSGRFGT 341 (353)
T ss_dssp HHHHHHHHCCTSSTT
T ss_pred HHHHHHHHhcCCCCc
Confidence 999999999999998
No 3
>KOG1089|consensus
Probab=100.00 E-value=1.5e-95 Score=800.72 Aligned_cols=297 Identities=45% Similarity=0.775 Sum_probs=280.1
Q ss_pred CcCChHHHHhHcCCCCCCCCeeEeeccCCcccccCCCCceEecCcCChhHHHHHHhhhcCCCcceEEeeecCCCceEeec
Q psy4442 345 TGTRSTSEWERMKFDEAPVRWRQCSANQNYELCETYPKYVIVPSGIDDGLLKSSADFRSNQRFPVVVWRHQKNGAVIARS 424 (655)
Q Consensus 345 ~~~d~~~Ef~RlG~~~~~~~WRVS~vN~~Y~lC~SYP~~LVVP~sIsD~~L~~vA~FRs~gRfPvlsW~h~~nGAvL~Rs 424 (655)
+.+|++.||+|||.......||+|++|++|++|+|||.+++||++++|+.|..+|+||++||||||+|+|..||++|+||
T Consensus 138 ~~fd~~~ef~r~~~~~~~~~w~~ssvNe~y~vC~tyP~~l~VPksitd~~l~~~~~fRs~gR~Pvl~y~h~~n~aal~R~ 217 (573)
T KOG1089|consen 138 KMFDPESEFDRMGIRKGNSHWRISSVNENYEVCPTYPEKLIVPKSITDEDLKKSAKFRSGGRFPVLSYSHKENGAALMRS 217 (573)
T ss_pred eecchHhHHHHHhccCCCCCceEEecCCCeeeccCCCceeEecCCCchHhhhccchhccCCccceEEEEeccCCcceeee
Confidence 55799999999999322789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCCCChHhHHHHHHHHHhCCCCCCCCccccccCCCcceeEeec-------c-cccCCC-CCC------Ccccc
Q psy4442 425 SQPQVGVLGWRKKEDEMLLEQITKAGSGGDESSKRFDRENWNRYDLIVPK-------A-KKEGIG-ESQ------PFRER 489 (655)
Q Consensus 425 SQP~vG~~g~Rs~eDE~lL~aI~~a~~~~~~s~~~~~~~~~~~~l~IvDa-------a-ra~G~G-E~~------p~~f~ 489 (655)
|||++|...+||.+||++|++|.++... .++.+|+|+ | +|+|+| |+. ...|+
T Consensus 218 SqPL~g~~~~Rc~~DE~il~ai~k~~~~-------------~~~~yivDtRp~~nA~an~A~g~g~En~~~Y~~~~~~f~ 284 (573)
T KOG1089|consen 218 SQPLSGFIAKRCREDEKILEAILKANPN-------------SKRGYIVDTRPRTNAMANRAKGGGYENEDNYSQWKFLFL 284 (573)
T ss_pred cCCCcccccccchHHHHHHHHHHhhCcC-------------ccceeEEeccchhhHHHHHhhcCCCcchhhHHHHHHHhc
Confidence 9999999999999999999999987542 456899998 4 899999 977 27899
Q ss_pred CCCChHHHHHHHHHHHhcccC-CCCCchhhhhcccCCchHHHHHHHHHHHHHHHHHhhhcCcEEEEEcCCCCCcchhHHH
Q psy4442 490 TLPGKDEIRSGWWKAVDGTSW-RAPSNTSWWKAVDGTSWLQNMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQLVS 568 (655)
Q Consensus 490 ~i~nIh~iR~Sf~~~L~~lc~-~~~~~~~wls~Le~s~WL~~V~~lL~~a~~ia~~l~~~g~sVLVhcsdGwDrT~qisS 568 (655)
+|+|||+||+|| ++|.++|. ....+++|++.||+|+||.||+.+|++|+.||++|+.+|.|||||||||||||+||||
T Consensus 285 ~i~nIh~v~~s~-~kl~e~c~~~~~~~~~~ls~LE~SgWL~~i~~~L~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~S 363 (573)
T KOG1089|consen 285 GIENIHVVRSSL-QKLLEVCNNFLPTMDKWLSLLESSGWLKHIRAILKAAAEIAKCLSSEGASVLVHCSDGWDRTCQVSS 363 (573)
T ss_pred CcchHHHHHHHH-HHHHHHHhccCccHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCcchhHHHHH
Confidence 999999999999 88888886 4457889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCccccchhhHHHHHHhHhhhcCCCcccccCCC----CCCCCCCchhhHHHHHHHHHHhhCCCCccCCccchHHH
Q psy4442 569 LAEILLDPYYRTVKGFQVLVEREWLEFGHKFDDRCGRN----DKSSERSPVFLQWLDCVYQLLTQFPTEFQFNSMFLFPT 644 (655)
Q Consensus 569 LaqLllDPyYRTi~GF~~LIeKEWlsfGH~F~~R~gh~----~~~~e~sPvFlqFLDCV~QL~~QfP~aFEFne~fL~~L 644 (655)
|||||||||||||+|||+|||||||+|||||.+||||. .++++.||||+|||||||||++|||++|||||+||+.|
T Consensus 364 LaQllLDP~yRTi~GFqsLIeKeWi~~GH~F~~Rc~hl~~~~~~~ke~SPvF~qFLDcvwQl~~QfP~~FEFne~fLi~L 443 (573)
T KOG1089|consen 364 LAQLLLDPYYRTIKGFQSLIEKEWISFGHKFLDRCGHLAYNDGDSKEESPVFLQFLDCVWQLLEQFPCAFEFNERFLIKL 443 (573)
T ss_pred HHHHHhCchhhhHHHHHHHHHHHHHHcCCcHHHhcCCcccccCCCcccCcHHHHHHHHHHHHHhhCCcceehhHHHHHHH
Confidence 99999999999999999999999999999999999998 37889999999999999999999999999999999999
Q ss_pred HHhhccCCCCC
Q psy4442 645 EFQFNSMFLGS 655 (655)
Q Consensus 645 ~~h~yS~~FGt 655 (655)
++|+|||.|||
T Consensus 444 ~~h~ys~qfGt 454 (573)
T KOG1089|consen 444 HEHAYSSQFGT 454 (573)
T ss_pred HHhhHHhhhcc
Confidence 99999999998
No 4
>KOG1090|consensus
Probab=100.00 E-value=2.2e-58 Score=516.32 Aligned_cols=297 Identities=33% Similarity=0.579 Sum_probs=235.7
Q ss_pred HHHhHcCCCCCCCCeeEeeccCCcccccCCCCceEecCcCChhHHHHHHhhhcCCCcceEEeeecCCCceEeeccCCcc-
Q psy4442 351 SEWERMKFDEAPVRWRQCSANQNYELCETYPKYVIVPSGIDDGLLKSSADFRSNQRFPVVVWRHQKNGAVIARSSQPQV- 429 (655)
Q Consensus 351 ~Ef~RlG~~~~~~~WRVS~vN~~Y~lC~SYP~~LVVP~sIsD~~L~~vA~FRs~gRfPvlsW~h~~nGAvL~RsSQP~v- 429 (655)
.++.|||....-..||.+..|.+|.+|+|||..+|||..+.|..|.++++++.++||||+||+| .|||+|+|+++|..
T Consensus 1000 ~d~~rl~ers~i~d~~rlg~N~~YaiCrSYPg~~IvP~~~~d~al~~v~rcf~~~R~Pvv~Wr~-~ngAlLvR~g~~~sk 1078 (1732)
T KOG1090|consen 1000 MDYSRLGERSKIVDLRRLGSNLDYAICRSYPGLLIVPQEVQDNALQKVSRCFVQNRLPVVVWRN-ENGALLVRAGAFTSK 1078 (1732)
T ss_pred ccHHHHHHHHHHHHHHHhccCccchhhcCCCceEeccccccHHHHHHHHHHHhcccccceeeec-CCcceEEecCCCccc
Confidence 4566777652224688888899999999999999999999999999999999999999999999 58999999999852
Q ss_pred cCCCC----------------CChHhHHHHHHHHHhCCCCC----------------CCCcc------------------
Q psy4442 430 GVLGW----------------RKKEDEMLLEQITKAGSGGD----------------ESSKR------------------ 459 (655)
Q Consensus 430 G~~g~----------------Rs~eDE~lL~aI~~a~~~~~----------------~s~~~------------------ 459 (655)
++.|+ .+.|.|++|+++.+..+... ++...
T Consensus 1079 ~vvg~lK~~~~~s~nas~~~ss~~eqekyl~a~vsSmp~~~~~sg~n~~~~s~~~hm~s~~k~~~s~~~~rs~~l~td~~ 1158 (1732)
T KOG1090|consen 1079 DVVGKLKAQNAPSPNASQLDSSSLEQEKYLQAVVSSMPEYADASGRNALIGSSSAHMGSHAKLSNSSQRARSYALPTDYA 1158 (1732)
T ss_pred cHHhhhccccCCCCCcccccccchhHHHHHHHHHhcChhhhhhhccchhhcchhhhcccccccccchhhhhhccCCcccc
Confidence 32221 35688999999865432110 00000
Q ss_pred -----ccc-------cCC--------CcceeEe-eccccc-CCC-C-CCCccccCCCChHHHHHHHHHHHhcccCCC---
Q psy4442 460 -----FDR-------ENW--------NRYDLIV-PKAKKE-GIG-E-SQPFRERTLPGKDEIRSGWWKAVDGTSWRA--- 512 (655)
Q Consensus 460 -----~~~-------~~~--------~~~l~Iv-Daara~-G~G-E-~~p~~f~~i~nIh~iR~Sf~~~L~~lc~~~--- 512 (655)
++. .++ ...++|+ |.|+++ ... . +..++......+.++|.|| |||...|.+.
T Consensus 1159 d~~~~~~~g~~~t~ng~p~~p~~r~~r~aLYiLgeK~q~k~~~~id~~ae~IpV~~~e~rq~r~sf-kkl~kaC~p~~~~ 1237 (1732)
T KOG1090|consen 1159 DKFSTFNDGCTLTQNGAPPFPTTRIRRKALYILGEKAQLKVRIDIDQQAELIPVEVFEERQVRASF-KKLLKACVPGCPA 1237 (1732)
T ss_pred cccccccCCCcccccCCCCCCCcchhhhhhhhccchhcccccCChhhccceeeeechhHHHHHHHH-HHHHHHhCCCCcc
Confidence 000 000 0011111 111111 000 0 0024445567889999999 7777777652
Q ss_pred --CCchhhhhcccCCchHHHHHHHHHHHHHHHHHhhhcCcEEEEEcCCCCCcchhHHHHHHHHhCccccchhhHHHHHHh
Q psy4442 513 --PSNTSWWKAVDGTSWLQNMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQVLVER 590 (655)
Q Consensus 513 --~~~~~wls~Le~s~WL~~V~~lL~~a~~ia~~l~~~g~sVLVhcsdGwDrT~qisSLaqLllDPyYRTi~GF~~LIeK 590 (655)
++..+|+..+|.|.||++|+.+|+.++.||++|+..++||+|-.+||||.|+|++||+||++||||||++||++||||
T Consensus 1238 ~e~~~~SFl~s~e~S~WlqqIskllqlS~~VV~Lldl~~SSV~v~LEdG~dITtqlsSl~QLlsDPyYRtldGFrvLVEK 1317 (1732)
T KOG1090|consen 1238 AEPSPASFLESLEDSEWLQQISKLLQLSVLVVELLDLSNSSVLVGLEDGWDITTQLSSLSQLLSDPYYRTLDGFRVLVEK 1317 (1732)
T ss_pred CCCCHHHHHHHHhhcchHHHHHHHHhhhhhhhhhhhccCCeEEEEeccCchhhhhhhhhhhhcCChhhhcccchhhhhhh
Confidence 367899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCcccccCCCCCCCCCCchhhHHHHHHHHHHhhCCCCccCCccchHHHHHhhccCCCCC
Q psy4442 591 EWLEFGHKFDDRCGRNDKSSERSPVFLQWLDCVYQLLTQFPTEFQFNSMFLFPTEFQFNSMFLGS 655 (655)
Q Consensus 591 EWlsfGH~F~~R~gh~~~~~e~sPvFlqFLDCV~QL~~QfP~aFEFne~fL~~L~~h~yS~~FGt 655 (655)
||++|||+| +|. ....+|+||||||||||+.+|||++||||..||.+|+||+.||+|-|
T Consensus 1318 EWLaFGHrF-Hr~-----~~~fsPsFlqFLDcVhQi~~QfPmaFEFs~FYl~FLaYHsvs~rFRT 1376 (1732)
T KOG1090|consen 1318 EWLAFGHRF-HRD-----TETFSPSFLQFLDCVHQISQQFPMAFEFSYFYLSFLAYHSVSGRFRT 1376 (1732)
T ss_pred hhhhhcchh-ccc-----ccccCchHHHHHHHHHHHHHhccchhhhHHHHHHHHhhhccchhhhh
Confidence 999999999 654 37789999999999999999999999999999999999999999976
No 5
>KOG4471|consensus
Probab=99.93 E-value=1.9e-27 Score=260.27 Aligned_cols=128 Identities=24% Similarity=0.380 Sum_probs=116.1
Q ss_pred HHHHHHhcc-cCccccCHHHHHHHHHHhhhccccccccCCHHHHhhccCCCCcccccccccCC--CccccccCCCccccc
Q psy4442 11 NVVRHRLTQ-ALVVMVNAALFVKLAQHTYANLFGTFLCNSSKDREDKMVTSQTFSVWKFLNHG--SYRNHLYNENNCERV 87 (655)
Q Consensus 11 ~~~~~~~~~-p~aFEFne~fL~~l~~h~ySc~FGTFL~Nse~ER~~~~~~~~t~SlW~~l~~~--~f~Np~Y~~~~~~~~ 87 (655)
.||-||..| |+||||||.||++|+||+|||+|||||||||+||.+.++.++|.|||+||++. .|.||+|+|..+.
T Consensus 449 DcV~Ql~rqfP~aFEFne~fLi~i~dh~ySClFGTFLcN~ekeR~~~~i~~~t~slWs~l~s~~~~f~Np~y~~~s~~-- 526 (717)
T KOG4471|consen 449 DCVWQLMRQFPCAFEFNEAFLIKIVDHLYSCLFGTFLCNSEKEREKEDITERTGSLWSYLNSSLSNFCNPFYDPSSNG-- 526 (717)
T ss_pred HHHHHHHHhCCcccccCHHHHHHHHHHHHHhhhhhhhcCCHHHHhhcCcccchhhHHHHHhhcchhhcCcccCchhcc--
Confidence 477788777 99999999999999999999999999999999999999999999999999864 8999999998875
Q ss_pred ccccccCCCCccccCCCCCC-----cccCCCCCCCcccccccccchhccccccceEeecc
Q psy4442 88 SMLKVLGTMPGIMLYPLREP-----VYEHKSLVEPSIPKLNGEYYDYVGSTVDGKLCLSN 142 (655)
Q Consensus 88 ~vL~P~~svq~leLWp~~~p-----~~e~~~l~~pf~~eL~gE~~e~~~r~~d~~lalSn 142 (655)
||+|++++++++||+++|. +..+++..+++ +++...++++.+++++.+...+|
T Consensus 527 -vL~Pvas~r~l~LW~~~ylrw~~~~~~~~~~~q~~-~~~v~~~~e~~k~~~el~~~~~~ 584 (717)
T KOG4471|consen 527 -VLYPVASVRALELWVQYYLRWNPPMEPQEPGCQRY-AELVALSDELKKKVRELQVDEIN 584 (717)
T ss_pred -cccchHhhhchhhceeeeeccCCCCCCCCccchhh-hccccchhhhhhHHHHHhhhhhh
Confidence 9999999999999999993 56677778899 99999999999998887654444
No 6
>KOG1089|consensus
Probab=99.83 E-value=9.1e-22 Score=218.30 Aligned_cols=95 Identities=25% Similarity=0.402 Sum_probs=84.2
Q ss_pred chHHHHHHhcc-cCccccCHHHHHHHHHHhhhccccccccCCHHHHhhccCCCCcccccccccCC--CccccccCCCccc
Q psy4442 9 CSNVVRHRLTQ-ALVVMVNAALFVKLAQHTYANLFGTFLCNSSKDREDKMVTSQTFSVWKFLNHG--SYRNHLYNENNCE 85 (655)
Q Consensus 9 ~~~~~~~~~~~-p~aFEFne~fL~~l~~h~ySc~FGTFL~Nse~ER~~~~~~~~t~SlW~~l~~~--~f~Np~Y~~~~~~ 85 (655)
=-+||.||++| |.+|||||+||++|++|+|||+|||||+||||||.+.++.++|.|||+|+++. +|.||+|+|+...
T Consensus 418 FLDcvwQl~~QfP~~FEFne~fLi~L~~h~ys~qfGtFl~NsekeR~e~~~~~kt~slW~~~~~~~~~f~Nply~~~~~~ 497 (573)
T KOG1089|consen 418 FLDCVWQLLEQFPCAFEFNERFLIKLHEHAYSSQFGTFLGNSEKERRELNLSEKTTSLWDYLLPRKEEFVNPLYDPRYLV 497 (573)
T ss_pred HHHHHHHHHhhCCcceehhHHHHHHHHHhhHHhhhccccccCHHHHHHhcccccceehHHhHhhhhhhhcCccccccccc
Confidence 34789999999 99999999999999999999999999999999999999999999999999865 9999999998765
Q ss_pred ccccccccCCCCc----cccCCCCCC
Q psy4442 86 RVSMLKVLGTMPG----IMLYPLREP 107 (655)
Q Consensus 86 ~~~vL~P~~svq~----leLWp~~~p 107 (655)
+.|...++. +++|.+-|.
T Consensus 498 ----~~~~l~P~~~~~~l~~W~~~y~ 519 (573)
T KOG1089|consen 498 ----IWPILAPQTATLSLQVWSSLYE 519 (573)
T ss_pred ----eeeccCcccccchhHHHHHHHH
Confidence 444444444 899997775
No 7
>KOG1090|consensus
Probab=99.45 E-value=2e-14 Score=164.38 Aligned_cols=105 Identities=21% Similarity=0.412 Sum_probs=89.0
Q ss_pred HHHHHHhcc-cCccccCHHHHHHHHHHhhhccccccccCCHHHHhhccCCC-------------CcccccccccC-----
Q psy4442 11 NVVRHRLTQ-ALVVMVNAALFVKLAQHTYANLFGTFLCNSSKDREDKMVTS-------------QTFSVWKFLNH----- 71 (655)
Q Consensus 11 ~~~~~~~~~-p~aFEFne~fL~~l~~h~ySc~FGTFL~Nse~ER~~~~~~~-------------~t~SlW~~l~~----- 71 (655)
.||-|+-.| |+|||||-.||.+|+||..||+|.|||.|||.||.+.++.. .|+|||+||..
T Consensus 1342 DcVhQi~~QfPmaFEFs~FYl~FLaYHsvs~rFRTFl~Dce~eR~esg~~~~ek~er~~~p~nr~~~svweyI~r~~k~T 1421 (1732)
T KOG1090|consen 1342 DCVHQISQQFPMAFEFSYFYLSFLAYHSVSGRFRTFLLDCEEERIESGLLYEEKGERRGQPLNRATISVWEYIDRLSKRT 1421 (1732)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHhhhccchhhhhhhccccHHhhhhhhhHHhhccccCCCcccccchHHHHHHHhcccC
Confidence 578888666 99999999999999999999999999999999999887622 37899999963
Q ss_pred CCccccccCCCcccccccccccCCCCccccCCCCC-------CcccCCCCCCCc
Q psy4442 72 GSYRNHLYNENNCERVSMLKVLGTMPGIMLYPLRE-------PVYEHKSLVEPS 118 (655)
Q Consensus 72 ~~f~Np~Y~~~~~~~~~vL~P~~svq~leLWp~~~-------p~~e~~~l~~pf 118 (655)
+.|+|.+|.|...+ +++|..++.++++|+=+. +.++.+..+.|-
T Consensus 1422 p~FyN~lYa~~~s~---ilrP~snV~~l~~W~fytee~La~G~PYD~E~a~~~~ 1472 (1732)
T KOG1090|consen 1422 PAFYNYLYAPEDSE---ILRPYSNVSNLKVWDFYTEEHLAYGPPYDWELAQGPP 1472 (1732)
T ss_pred hhHHHHhhCcCCcc---cccccCCccccceeccchHHHhccCCCcCcccccCCC
Confidence 49999999998877 899999999999999332 356666666663
No 8
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=96.57 E-value=0.0058 Score=52.81 Aligned_cols=60 Identities=33% Similarity=0.372 Sum_probs=47.2
Q ss_pred CcEEEEEcCCCCCcchhHHHHHHHHhCccccchhhHHHHHHhHhhhcCCCcccccCCCCCCCCCCchhhHHHHHHHHHHh
Q psy4442 549 SRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQVLVEREWLEFGHKFDDRCGRNDKSSERSPVFLQWLDCVYQLLT 628 (655)
Q Consensus 549 g~sVLVhcsdGwDrT~qisSLaqLllDPyYRTi~GF~~LIeKEWlsfGH~F~~R~gh~~~~~e~sPvFlqFLDCV~QL~~ 628 (655)
+.+|+|||.+|.+||+.++++..++......+ ....+++++.++..
T Consensus 39 ~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~ir~ 84 (105)
T smart00404 39 SGPVVVHCSAGVGRTGTFVALDILLQQLESET----------------------------------GEVDIFQTVKELRK 84 (105)
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHHHhcC----------------------------------CCCCHHHHHHHHHh
Confidence 67999999999999999998877776555433 34568899999999
Q ss_pred hCCCCccCCccchH
Q psy4442 629 QFPTEFQFNSMFLF 642 (655)
Q Consensus 629 QfP~aFEFne~fL~ 642 (655)
|-|.+++-.+.|..
T Consensus 85 ~r~~~~~~~~q~~~ 98 (105)
T smart00404 85 QRPGMVQTFEQYLF 98 (105)
T ss_pred hhhhhCCcHHHHHH
Confidence 99999985554443
No 9
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=96.57 E-value=0.0058 Score=52.81 Aligned_cols=60 Identities=33% Similarity=0.372 Sum_probs=47.2
Q ss_pred CcEEEEEcCCCCCcchhHHHHHHHHhCccccchhhHHHHHHhHhhhcCCCcccccCCCCCCCCCCchhhHHHHHHHHHHh
Q psy4442 549 SRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQVLVEREWLEFGHKFDDRCGRNDKSSERSPVFLQWLDCVYQLLT 628 (655)
Q Consensus 549 g~sVLVhcsdGwDrT~qisSLaqLllDPyYRTi~GF~~LIeKEWlsfGH~F~~R~gh~~~~~e~sPvFlqFLDCV~QL~~ 628 (655)
+.+|+|||.+|.+||+.++++..++......+ ....+++++.++..
T Consensus 39 ~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~ir~ 84 (105)
T smart00012 39 SGPVVVHCSAGVGRTGTFVALDILLQQLESET----------------------------------GEVDIFQTVKELRK 84 (105)
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHHHhcC----------------------------------CCCCHHHHHHHHHh
Confidence 67999999999999999998877776555433 34568899999999
Q ss_pred hCCCCccCCccchH
Q psy4442 629 QFPTEFQFNSMFLF 642 (655)
Q Consensus 629 QfP~aFEFne~fL~ 642 (655)
|-|.+++-.+.|..
T Consensus 85 ~r~~~~~~~~q~~~ 98 (105)
T smart00012 85 QRPGMVQTFEQYLF 98 (105)
T ss_pred hhhhhCCcHHHHHH
Confidence 99999985554443
No 10
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=94.70 E-value=0.043 Score=52.99 Aligned_cols=28 Identities=39% Similarity=0.563 Sum_probs=22.3
Q ss_pred cCcEEEEEcCCCCCcchhHHHHHHHHhC
Q psy4442 548 ESRSVLVHCSDGWDRTPQLVSLAEILLD 575 (655)
Q Consensus 548 ~g~sVLVhcsdGwDrT~qisSLaqLllD 575 (655)
...+||+||+-|-|||..+++|.+.++.
T Consensus 123 ~~~p~l~HC~aGKDRTG~~~alll~~lG 150 (164)
T PF13350_consen 123 APGPVLFHCTAGKDRTGVVAALLLSLLG 150 (164)
T ss_dssp TT--EEEE-SSSSSHHHHHHHHHHHHTT
T ss_pred CCCcEEEECCCCCccHHHHHHHHHHHcC
Confidence 3369999999999999999999988874
No 11
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=92.95 E-value=0.17 Score=46.84 Aligned_cols=33 Identities=33% Similarity=0.528 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhhcCcEEEEEcCCCCCcchhHHH
Q psy4442 536 VSAVNLAATIELESRSVLVHCSDGWDRTPQLVS 568 (655)
Q Consensus 536 ~~a~~ia~~l~~~g~sVLVhcsdGwDrT~qisS 568 (655)
..+...++.+..+|.+|||||..|.+||+.++.
T Consensus 65 ~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ 97 (138)
T smart00195 65 PEAVEFIEDAEKKGGKVLVHCQAGVSRSATLII 97 (138)
T ss_pred HHHHHHHHHHhcCCCeEEEECCCCCchHHHHHH
Confidence 334444444556899999999999999998775
No 12
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=92.49 E-value=0.26 Score=45.20 Aligned_cols=31 Identities=35% Similarity=0.527 Sum_probs=23.1
Q ss_pred HHHHHHHhhhcCcEEEEEcCCCCCcchhHHH
Q psy4442 538 AVNLAATIELESRSVLVHCSDGWDRTPQLVS 568 (655)
Q Consensus 538 a~~ia~~l~~~g~sVLVhcsdGwDrT~qisS 568 (655)
+...++....+|.+|+|||.+|.+||+.+++
T Consensus 70 ~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ 100 (139)
T cd00127 70 AVDFIDDAREKGGKVLVHCLAGVSRSATLVI 100 (139)
T ss_pred HHHHHHHHHhcCCcEEEECCCCCchhHHHHH
Confidence 3333333444789999999999999998775
No 13
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=90.49 E-value=0.37 Score=44.18 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.3
Q ss_pred hhcCcEEEEEcCCCCCcchhHHH
Q psy4442 546 ELESRSVLVHCSDGWDRTPQLVS 568 (655)
Q Consensus 546 ~~~g~sVLVhcsdGwDrT~qisS 568 (655)
..+|..|||||..|-+||+.+++
T Consensus 70 ~~~~~~VlVHC~~G~~RS~~v~~ 92 (133)
T PF00782_consen 70 ISEGGKVLVHCKAGLSRSGAVAA 92 (133)
T ss_dssp HHTTSEEEEEESSSSSHHHHHHH
T ss_pred hcccceeEEEeCCCcccchHHHH
Confidence 44899999999999999998775
No 14
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=89.64 E-value=0.36 Score=47.41 Aligned_cols=61 Identities=25% Similarity=0.509 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCcEEEEEcCCCCCcchhHHHHHHHHhCccccchhhHHH-HHHhHhhhcCC
Q psy4442 527 WLQNMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQV-LVEREWLEFGH 597 (655)
Q Consensus 527 WL~~V~~lL~~a~~ia~~l~~~g~sVLVhcsdGwDrT~qisSLaqLllDPyYRTi~GF~~-LIeKEWlsfGH 597 (655)
|...-...+..|.++. ++....+|||||.+|-|||..+++.- |-+.|.-. =|-.|+..|+-
T Consensus 71 ~~~~~~~~v~~aL~~i--ld~~n~PvLiHC~~G~~rTG~vvg~l--------Rk~Q~W~~~~i~~Ey~~f~~ 132 (164)
T PF03162_consen 71 WVPISEEQVAEALEII--LDPRNYPVLIHCNHGKDRTGLVVGCL--------RKLQGWSLSSIFDEYRRFAG 132 (164)
T ss_dssp G----HHHHHHHHHHH--H-GGG-SEEEE-SSSSSHHHHHHHHH--------HHHTTB-HHHHHHHHHHHHG
T ss_pred cccCCHHHHHHHHHHH--hCCCCCCEEEEeCCCCcchhhHHHHH--------HHHcCCCHHHHHHHHHHhcC
Confidence 5555455555555433 45567899999999999999998763 44444432 35566666553
No 15
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=88.56 E-value=0.9 Score=47.41 Aligned_cols=42 Identities=31% Similarity=0.449 Sum_probs=34.3
Q ss_pred CcEEEEEcCCCCCcchhHHHHHHHHhCccccchhhHHHHHHhHhhhcCC
Q psy4442 549 SRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQVLVEREWLEFGH 597 (655)
Q Consensus 549 g~sVLVhcsdGwDrT~qisSLaqLllDPyYRTi~GF~~LIeKEWlsfGH 597 (655)
+.+||+||..|-|||..+++|.-.++++..++ |-.|.+.+++
T Consensus 136 ~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~-------v~~dyl~~~~ 177 (249)
T COG2365 136 NGPVLIHCTAGKDRTGLVAALYRKLVGGSDET-------VAADYLLTNR 177 (249)
T ss_pred cCCEEEecCCCCcchHHHHHHHHHHhCCchhH-------HHHHHHHcCC
Confidence 49999999999999999999999888888775 4455555443
No 16
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=81.78 E-value=2.5 Score=44.31 Aligned_cols=24 Identities=42% Similarity=0.749 Sum_probs=21.1
Q ss_pred hcCcEEEEEcCCCCCcchhHHHHH
Q psy4442 547 LESRSVLVHCSDGWDRTPQLVSLA 570 (655)
Q Consensus 547 ~~g~sVLVhcsdGwDrT~qisSLa 570 (655)
..|..|+|||..|-.||+.+++..
T Consensus 168 ~~g~~VaVHC~AGlGRTGtl~Aay 191 (241)
T PTZ00393 168 KNNRAVAVHCVAGLGRAPVLASIV 191 (241)
T ss_pred hcCCeEEEECCCCCCHHHHHHHHH
Confidence 478899999999999999888654
No 17
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=81.13 E-value=3.3 Score=40.61 Aligned_cols=23 Identities=43% Similarity=0.800 Sum_probs=20.7
Q ss_pred cCcEEEEEcCCCCCcchhHHHHH
Q psy4442 548 ESRSVLVHCSDGWDRTPQLVSLA 570 (655)
Q Consensus 548 ~g~sVLVhcsdGwDrT~qisSLa 570 (655)
.|..|+|||..|-.||+-+++..
T Consensus 97 ~g~~V~VHC~aGigRSgt~~a~y 119 (166)
T PTZ00242 97 PPETIAVHCVAGLGRAPILVALA 119 (166)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999888663
No 18
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=80.49 E-value=2.5 Score=43.44 Aligned_cols=25 Identities=32% Similarity=0.682 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCcchhHHHHHHHH
Q psy4442 549 SRSVLVHCSDGWDRTPQLVSLAEIL 573 (655)
Q Consensus 549 g~sVLVhcsdGwDrT~qisSLaqLl 573 (655)
+.+|+|||++|-.||+.++++.-++
T Consensus 193 ~~pivVHC~~G~gRsg~f~a~~~~~ 217 (258)
T smart00194 193 TGPIVVHCSAGVGRTGTFIAIDILL 217 (258)
T ss_pred CCCEEEEeCCCCCccchhhHHHHHH
Confidence 6799999999999999999776544
No 19
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=80.19 E-value=2.3 Score=42.86 Aligned_cols=26 Identities=35% Similarity=0.654 Sum_probs=21.6
Q ss_pred cCcEEEEEcCCCCCcchhHHHHHHHH
Q psy4442 548 ESRSVLVHCSDGWDRTPQLVSLAEIL 573 (655)
Q Consensus 548 ~g~sVLVhcsdGwDrT~qisSLaqLl 573 (655)
.+.+|+|||.+|-.||+.++++.-++
T Consensus 165 ~~~pivVHC~~G~gRsg~~~a~~~~~ 190 (231)
T cd00047 165 GSGPIVVHCSAGVGRTGTFIAIDILL 190 (231)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHH
Confidence 46799999999999999998765443
No 20
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=79.53 E-value=4 Score=40.65 Aligned_cols=37 Identities=38% Similarity=0.530 Sum_probs=25.6
Q ss_pred HHHHHHHhhhcCcEEEEEcCCCCCcchhHHHHHHHHhC
Q psy4442 538 AVNLAATIELESRSVLVHCSDGWDRTPQLVSLAEILLD 575 (655)
Q Consensus 538 a~~ia~~l~~~g~sVLVhcsdGwDrT~qisSLaqLllD 575 (655)
.-.+...|. +|..|+|||-.|-.||..|.+-.-+.|.
T Consensus 123 ~~eL~~~L~-~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 123 LEELAARLE-NGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp HHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHH-cCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 345666777 7999999999999999998875555443
No 21
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=79.44 E-value=3.1 Score=41.24 Aligned_cols=27 Identities=26% Similarity=0.564 Sum_probs=22.7
Q ss_pred hhcCcEEEEEcCCCCCcchhHHHHHHH
Q psy4442 546 ELESRSVLVHCSDGWDRTPQLVSLAEI 572 (655)
Q Consensus 546 ~~~g~sVLVhcsdGwDrT~qisSLaqL 572 (655)
.....+|+|||++|-.||+.++++..+
T Consensus 167 ~~~~~pivVhc~~G~gRsg~f~~~~~~ 193 (235)
T PF00102_consen 167 DDPNGPIVVHCSDGVGRSGTFCAIDIL 193 (235)
T ss_dssp STTSSEEEEESSSSSHHHHHHHHHHHH
T ss_pred cCCccceEeecccccccccccccchhh
Confidence 456799999999999999999875544
No 22
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=77.46 E-value=3 Score=44.67 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCCcchhHHHHHHH
Q psy4442 549 SRSVLVHCSDGWDRTPQLVSLAEI 572 (655)
Q Consensus 549 g~sVLVhcsdGwDrT~qisSLaqL 572 (655)
..+|+|||++|-.||..++++--+
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~ 252 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDIC 252 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHH
Confidence 369999999999999999987533
No 23
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=75.70 E-value=2.4 Score=45.06 Aligned_cols=30 Identities=33% Similarity=0.608 Sum_probs=27.8
Q ss_pred cCcEEEEEcCCCCCcchhHHHHHHHHhCcc
Q psy4442 548 ESRSVLVHCSDGWDRTPQLVSLAEILLDPY 577 (655)
Q Consensus 548 ~g~sVLVhcsdGwDrT~qisSLaqLllDPy 577 (655)
++.+++||||.|-.||.-+.+|-+||.+|-
T Consensus 217 ~t~piiVHCSAGvGRTGTFIalD~ll~~~~ 246 (302)
T COG5599 217 RTGPIIVHCSAGVGRTGTFIALDILLRMPN 246 (302)
T ss_pred CCCCEEEEeccCCCCcceeeeHHHHHhccc
Confidence 678899999999999999999999999885
No 24
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=72.04 E-value=5.6 Score=37.56 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=24.4
Q ss_pred HHhhhcCcEEEEEcCCCCCcchhHHHHHHHHh
Q psy4442 543 ATIELESRSVLVHCSDGWDRTPQLVSLAEILL 574 (655)
Q Consensus 543 ~~l~~~g~sVLVhcsdGwDrT~qisSLaqLll 574 (655)
+.++....+||+||..|- ||..+.+|.+..+
T Consensus 80 ~~~~~~~~pvL~HC~sG~-Rt~~l~al~~~~~ 110 (135)
T TIGR01244 80 AAIGAAEGPVLAYCRSGT-RSSLLWGFRQAAE 110 (135)
T ss_pred HHHHhCCCCEEEEcCCCh-HHHHHHHHHHHHc
Confidence 334445688999999999 9999998877664
No 25
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=70.44 E-value=8.6 Score=41.30 Aligned_cols=22 Identities=14% Similarity=0.454 Sum_probs=19.5
Q ss_pred CcEEEEEcCCCCCcchhHHHHH
Q psy4442 549 SRSVLVHCSDGWDRTPQLVSLA 570 (655)
Q Consensus 549 g~sVLVhcsdGwDrT~qisSLa 570 (655)
..+++||||+|-.||..+|++-
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiD 242 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFD 242 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHH
Confidence 4699999999999999999755
No 26
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=70.29 E-value=7.7 Score=42.03 Aligned_cols=23 Identities=26% Similarity=0.601 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCcchhHHHHHHH
Q psy4442 550 RSVLVHCSDGWDRTPQLVSLAEI 572 (655)
Q Consensus 550 ~sVLVhcsdGwDrT~qisSLaqL 572 (655)
.+++|||++|-.||..++++--+
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~ 270 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNA 270 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHH
Confidence 58999999999999999876444
No 27
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=69.82 E-value=15 Score=36.30 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhhcCcEEEEEcCCCCCcchhHHH
Q psy4442 533 LLLVSAVNLAATIELESRSVLVHCSDGWDRTPQLVS 568 (655)
Q Consensus 533 ~lL~~a~~ia~~l~~~g~sVLVhcsdGwDrT~qisS 568 (655)
.+-+.+..|.+++. +|..|+|||.-|-.||+-+.+
T Consensus 90 ~l~~~v~~i~~~~~-~g~kVvVHC~~GigRSgtvia 124 (180)
T COG2453 90 DLDKIVDFIEEALS-KGKKVVVHCQGGIGRSGTVIA 124 (180)
T ss_pred HHHHHHHHHHHHHh-cCCeEEEEcCCCCchHHHHHH
Confidence 33344455555555 788999999999999996663
No 28
>KOG0793|consensus
Probab=67.77 E-value=4.2 Score=48.07 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhhhcCcEEEEEcCCCCCcchhHHHHHHHH
Q psy4442 530 NMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQLVSLAEIL 573 (655)
Q Consensus 530 ~V~~lL~~a~~ia~~l~~~g~sVLVhcsdGwDrT~qisSLaqLl 573 (655)
.-+.+|+---+|-++..-+.++|+|||+||-.||...+.+-+++
T Consensus 908 sarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl 951 (1004)
T KOG0793|consen 908 SARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVL 951 (1004)
T ss_pred chHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHH
Confidence 56889999999999998778889999999999999887554444
No 29
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=65.34 E-value=5 Score=43.21 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCcchhHHHHHHHH
Q psy4442 550 RSVLVHCSDGWDRTPQLVSLAEIL 573 (655)
Q Consensus 550 ~sVLVhcsdGwDrT~qisSLaqLl 573 (655)
.+++||||+|-.||..++++--++
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i 253 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICL 253 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHH
Confidence 589999999999999999775433
No 30
>PHA02738 hypothetical protein; Provisional
Probab=64.91 E-value=9.7 Score=41.21 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCCcchhHHHHHHH
Q psy4442 549 SRSVLVHCSDGWDRTPQLVSLAEI 572 (655)
Q Consensus 549 g~sVLVhcsdGwDrT~qisSLaqL 572 (655)
..+|+|||++|-.||..++++--+
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~ 250 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDIS 250 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHH
Confidence 358999999999999998876543
No 31
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=60.46 E-value=11 Score=34.85 Aligned_cols=33 Identities=33% Similarity=0.516 Sum_probs=23.8
Q ss_pred HHHHHhhhcCcEEEEEcCCCCCcchhHHHHHHHH
Q psy4442 540 NLAATIELESRSVLVHCSDGWDRTPQLVSLAEIL 573 (655)
Q Consensus 540 ~ia~~l~~~g~sVLVhcsdGwDrT~qisSLaqLl 573 (655)
..++.|.....+||+||..|. |...+-+|+|-+
T Consensus 77 ~f~~~l~~~~~Pvl~hC~sG~-Ra~~l~~l~~~~ 109 (110)
T PF04273_consen 77 AFADALESLPKPVLAHCRSGT-RASALWALAQAK 109 (110)
T ss_dssp HHHHHHHTTTTSEEEE-SCSH-HHHHHHHHHHH-
T ss_pred HHHHHHHhCCCCEEEECCCCh-hHHHHHHHHhhh
Confidence 334556655679999999999 788888888753
No 32
>PRK12361 hypothetical protein; Provisional
Probab=60.32 E-value=21 Score=41.23 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhhcCcEEEEEcCCCCCcchhHHH
Q psy4442 536 VSAVNLAATIELESRSVLVHCSDGWDRTPQLVS 568 (655)
Q Consensus 536 ~~a~~ia~~l~~~g~sVLVhcsdGwDrT~qisS 568 (655)
..|+..++....+|.+|+|||.-|..|++-++.
T Consensus 162 ~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ 194 (547)
T PRK12361 162 NQAINWIHRQVRANKSVVVHCALGRGRSVLVLA 194 (547)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHH
Confidence 334444444455789999999999999997764
No 33
>KOG2433|consensus
Probab=54.76 E-value=9 Score=42.86 Aligned_cols=103 Identities=17% Similarity=0.334 Sum_probs=62.2
Q ss_pred cCCCChHHHHHHHHHHHhcccCCCCCchhhhhcccCCchHHHH-------------HHHHHHHHHHHHHhhhcCcEEEE-
Q psy4442 489 RTLPGKDEIRSGWWKAVDGTSWRAPSNTSWWKAVDGTSWLQNM-------------HLLLVSAVNLAATIELESRSVLV- 554 (655)
Q Consensus 489 ~~i~nIh~iR~Sf~~~L~~lc~~~~~~~~wls~Le~s~WL~~V-------------~~lL~~a~~ia~~l~~~g~sVLV- 554 (655)
..||.=..|++++ .++.+--..-..+.+|....|-+-=|+.+ ..+-..+.+.|.....+|.+|++
T Consensus 430 ~pIPtHrEiQqaL-vdi~DKpA~FVGSrQWIGStEis~vLn~ll~~~skil~v~sGaEva~~~rELA~HFqt~GTPVMIG 508 (577)
T KOG2433|consen 430 KPIPTHREIQQAL-VDIQDKPAKFVGSRQWIGSTEISFVLNELLKLESKILAVNSGAEVAERVRELARHFQTSGTPVMIG 508 (577)
T ss_pred CCCCcHHHHHHHH-HhccCcccceecccceecchhHHHHHHHHhccceEEEEeccccHHHHHHHHHHHHhhccCCcEEEc
Confidence 4567666777766 33332111111334554443332222221 12233456667778889999876
Q ss_pred -----EcCCCCC---cchhHHHHHHHHhCccccchhhHHHHHHhHhhhc
Q psy4442 555 -----HCSDGWD---RTPQLVSLAEILLDPYYRTVKGFQVLVEREWLEF 595 (655)
Q Consensus 555 -----hcsdGwD---rT~qisSLaqLllDPyYRTi~GF~~LIeKEWlsf 595 (655)
|--=|-| .|.|+- =|+|||+|.--+-.++.-+|-|+..
T Consensus 509 GgvLAHTIlGVd~n~~TGq~K---FLILDPHYTGaeDl~tI~~KGWCgW 554 (577)
T KOG2433|consen 509 GGVLAHTILGVDFNDTTGQTK---FLILDPHYTGAEDLKTITSKGWCGW 554 (577)
T ss_pred cceeeeeEeeeeeecccCceE---EEEeCCCcCChhhHHHHhhcccccc
Confidence 5444443 466654 3689999999999999999999976
No 34
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=52.09 E-value=18 Score=29.85 Aligned_cols=39 Identities=36% Similarity=0.542 Sum_probs=29.3
Q ss_pred cccceEeecccccccccccCCCCCC-ceeeccccceeeeeee
Q psy4442 133 TVDGKLCLSNYRLCHQDNNGSNASI-TFFNIPLGLIENVEIK 173 (655)
Q Consensus 133 ~~d~~lalSnyrl~l~~~~~~~~~~-~~~~vPLg~ie~~e~~ 173 (655)
...|.|.+|++++.+.++. .... ..+.|||.-|.+||..
T Consensus 29 ~~~G~LyiT~~~lcF~s~~--~~~~~~~~~ipl~~I~~i~k~ 68 (69)
T PF02893_consen 29 PVQGRLYITNNYLCFYSNK--FGSKTCKFVIPLSDIKSIEKE 68 (69)
T ss_dssp -EEEEEEEESSEEEEEESS--SSS-E-EEEEEGGGEEEEEEE
T ss_pred ceeeEEEECCCEEEEEECC--CCCceEEEEEEhHheeEEEEe
Confidence 5669999999999998832 2122 3789999999999864
No 35
>KOG1719|consensus
Probab=46.88 E-value=26 Score=34.88 Aligned_cols=30 Identities=30% Similarity=0.500 Sum_probs=22.5
Q ss_pred HHHHHHHhhhcCcEEEEEcCCCCCcchhHH
Q psy4442 538 AVNLAATIELESRSVLVHCSDGWDRTPQLV 567 (655)
Q Consensus 538 a~~ia~~l~~~g~sVLVhcsdGwDrT~qis 567 (655)
|++-++....-|.+|-|||.-|..|++-++
T Consensus 98 aVeFi~k~asLGktvYVHCKAGRtRSaTvV 127 (183)
T KOG1719|consen 98 AVEFIHKNASLGKTVYVHCKAGRTRSATVV 127 (183)
T ss_pred HHHHHHhccccCCeEEEEecCCCccchhhh
Confidence 444455555678999999999999977544
No 36
>KOG0789|consensus
Probab=44.94 E-value=48 Score=36.22 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=19.0
Q ss_pred cCcEEEEEcCCCCCcchhHHHHH
Q psy4442 548 ESRSVLVHCSDGWDRTPQLVSLA 570 (655)
Q Consensus 548 ~g~sVLVhcsdGwDrT~qisSLa 570 (655)
...+++|||+.|-+||.-++.+-
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~ 320 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIE 320 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHH
Confidence 45799999999999999777433
No 37
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=43.75 E-value=20 Score=28.71 Aligned_cols=39 Identities=38% Similarity=0.647 Sum_probs=30.5
Q ss_pred cccceEeecccccccccccCCCCCCc-eeeccccceeeeeee
Q psy4442 133 TVDGKLCLSNYRLCHQDNNGSNASIT-FFNIPLGLIENVEIK 173 (655)
Q Consensus 133 ~~d~~lalSnyrl~l~~~~~~~~~~~-~~~vPLg~ie~~e~~ 173 (655)
...|.+.+|++++++..+. ..... .+.|||.-|.+||+.
T Consensus 21 ~~~G~lyiT~~~l~F~S~~--~~~~~~~~~ipl~~I~~i~k~ 60 (61)
T smart00568 21 PVQGRLYISNYRLCFRSDL--PGKLTPKVVIPLADITRIEKS 60 (61)
T ss_pred cccEEEEEECCEEEEEccC--CCCeeEEEEEEHHHeeEEEEC
Confidence 4568999999999998833 22333 789999999999863
No 38
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=43.69 E-value=29 Score=33.39 Aligned_cols=39 Identities=15% Similarity=0.384 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhhcCcEEEEEcCCCCCcchhHHHHHHHH
Q psy4442 534 LLVSAVNLAATIELESRSVLVHCSDGWDRTPQLVSLAEIL 573 (655)
Q Consensus 534 lL~~a~~ia~~l~~~g~sVLVhcsdGwDrT~qisSLaqLl 573 (655)
-++.-+.++..+ ..+..+++||..|-.||.-..+++.||
T Consensus 110 ~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 110 DIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 333444555556 368999999999999999888888776
No 39
>KOG2836|consensus
Probab=42.76 E-value=22 Score=34.56 Aligned_cols=30 Identities=43% Similarity=0.556 Sum_probs=26.0
Q ss_pred hhcCcEEEEEcCCCCCcchhHHHHHHHHhC
Q psy4442 546 ELESRSVLVHCSDGWDRTPQLVSLAEILLD 575 (655)
Q Consensus 546 ~~~g~sVLVhcsdGwDrT~qisSLaqLllD 575 (655)
+.-|.+|-|||-.|-.|.+++++||-|=.-
T Consensus 94 e~p~~cvavhcvaglgrapvlvalalie~g 123 (173)
T KOG2836|consen 94 EEPGCCVAVHCVAGLGRAPVLVALALIEAG 123 (173)
T ss_pred hCCCCeEEEEeecccCcchHHHHHHHHHcc
Confidence 457999999999999999999999876543
No 40
>KOG1716|consensus
Probab=40.14 E-value=53 Score=34.93 Aligned_cols=30 Identities=33% Similarity=0.576 Sum_probs=22.8
Q ss_pred HHHHHHHhhhcCcEEEEEcCCCCCcchhHH
Q psy4442 538 AVNLAATIELESRSVLVHCSDGWDRTPQLV 567 (655)
Q Consensus 538 a~~ia~~l~~~g~sVLVhcsdGwDrT~qis 567 (655)
|+...+.....|.-|||||..|--|++-++
T Consensus 144 ~~~fI~~a~~~~~~vlVHC~~GvSRSat~v 173 (285)
T KOG1716|consen 144 AISFIEKAREKGGKVLVHCQAGVSRSATLV 173 (285)
T ss_pred HHHHHHHHHhCCCeEEEEcCCccchhHHHH
Confidence 455555555579999999999999988544
No 41
>KOG0792|consensus
Probab=39.70 E-value=24 Score=43.87 Aligned_cols=43 Identities=28% Similarity=0.436 Sum_probs=30.0
Q ss_pred CCchHHH-----HHHHHHHHHHHHHHhhhc-CcEEEEEcCCCCCcchhHH
Q psy4442 524 GTSWLQN-----MHLLLVSAVNLAATIELE-SRSVLVHCSDGWDRTPQLV 567 (655)
Q Consensus 524 ~s~WL~~-----V~~lL~~a~~ia~~l~~~-g~sVLVhcsdGwDrT~qis 567 (655)
=+-|-+| +...|+-...| ..++.. +-+||||||.|-.||.++.
T Consensus 1033 YtaWPDHg~P~D~~~FL~Fleev-rsvR~~t~pPilvHCSAGiGRTGVlI 1081 (1144)
T KOG0792|consen 1033 YTAWPDHGVPDDPNDFLDFLEEV-RSVRRGTNPPILVHCSAGIGRTGVLI 1081 (1144)
T ss_pred ecccccCCCCCChHHHHHHHHHH-HHHhccCCCCeEEEccCCCCcceehH
Confidence 3556654 56666665553 345544 6799999999999999754
No 42
>KOG1717|consensus
Probab=36.86 E-value=51 Score=35.47 Aligned_cols=43 Identities=23% Similarity=0.361 Sum_probs=37.9
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhcCcEEEEEcCCCCCcchhHH
Q psy4442 525 TSWLQNMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQLV 567 (655)
Q Consensus 525 s~WL~~V~~lL~~a~~ia~~l~~~g~sVLVhcsdGwDrT~qis 567 (655)
-.|-+.++...-.|+...+--..+.+.|||||=-|-.|+.-|+
T Consensus 227 Dh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTvt 269 (343)
T KOG1717|consen 227 DHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTVT 269 (343)
T ss_pred chhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHHH
Confidence 4899999999999999888888899999999999999977655
No 43
>PLN02727 NAD kinase
Probab=31.03 E-value=52 Score=40.82 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=24.7
Q ss_pred HHHHHHHh-hhcCcEEEEEcCCCCCcchhHHHH
Q psy4442 538 AVNLAATI-ELESRSVLVHCSDGWDRTPQLVSL 569 (655)
Q Consensus 538 a~~ia~~l-~~~g~sVLVhcsdGwDrT~qisSL 569 (655)
...+++.+ +....+||+||..|-|||..++|.
T Consensus 329 Ve~fa~~l~~slpkPVLvHCKSGarRAGamvA~ 361 (986)
T PLN02727 329 VEKFASLVSDSSKKPIYLHSKEGVWRTSAMVSR 361 (986)
T ss_pred HHHHHHHHHhhcCCCEEEECCCCCchHHHHHHH
Confidence 33445555 345799999999999999988884
No 44
>KOG1572|consensus
Probab=29.69 E-value=48 Score=34.98 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCcEEEEEcCCCCCcchhHHHH
Q psy4442 527 WLQNMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQLVSL 569 (655)
Q Consensus 527 WL~~V~~lL~~a~~ia~~l~~~g~sVLVhcsdGwDrT~qisSL 569 (655)
|-......+..|.++ .|+..+.++|+||..|--||..++.-
T Consensus 128 ~~~~~~~~i~~~l~~--lld~~N~P~Lihc~rGkhRtg~lVgc 168 (249)
T KOG1572|consen 128 FVNIPDHSIRKALKV--LLDKRNYPILIHCKRGKHRTGCLVGC 168 (249)
T ss_pred CCCChHHHHHHHHHH--HhcccCCceEEecCCCCcchhhhHHH
Confidence 444444555555555 67778999999999999999987753
No 45
>KOG0791|consensus
Probab=28.44 E-value=70 Score=35.69 Aligned_cols=44 Identities=25% Similarity=0.414 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhhhcCcEEEEEcCCCCCcchhHHHHHHHHh
Q psy4442 531 MHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQLVSLAEILL 574 (655)
Q Consensus 531 V~~lL~~a~~ia~~l~~~g~sVLVhcsdGwDrT~qisSLaqLll 574 (655)
-..+++-...+-+.+.....+++||||-|-.||.-+-+|=+|+-
T Consensus 269 ~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLq 312 (374)
T KOG0791|consen 269 TESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQ 312 (374)
T ss_pred chhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHH
Confidence 34566666666777777789999999999999999888877764
No 46
>PF15581 Imm35: Immunity protein 35
Probab=27.32 E-value=35 Score=30.71 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=18.2
Q ss_pred hCccccchhhHHHHHHhHhhhc
Q psy4442 574 LDPYYRTVKGFQVLVEREWLEF 595 (655)
Q Consensus 574 lDPyYRTi~GF~~LIeKEWlsf 595 (655)
.|.--+|++|.+.|||.||-..
T Consensus 25 ~esa~~~i~~l~~lIe~eWRGl 46 (93)
T PF15581_consen 25 EESARRTIRNLESLIEHEWRGL 46 (93)
T ss_pred hhHHHHHHHHHHHHHHHHHcCC
Confidence 4555689999999999999754
No 47
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=25.74 E-value=1.2e+02 Score=34.80 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhhhc--CcEEEEEcCCCCCcchhHHHHHHHHh
Q psy4442 530 NMHLLLVSAVNLAATIELE--SRSVLVHCSDGWDRTPQLVSLAEILL 574 (655)
Q Consensus 530 ~V~~lL~~a~~ia~~l~~~--g~sVLVhcsdGwDrT~qisSLaqLll 574 (655)
.++..|-.+..-+...-.. +.+|||+|.+|-|... -++||=|+.
T Consensus 355 ~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSV-gVaLaILc~ 400 (451)
T PF04179_consen 355 DLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSV-GVALAILCK 400 (451)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHH-HHHHHHHHH
Confidence 4555665555544433224 8999999999999743 333444443
No 48
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=24.51 E-value=65 Score=26.29 Aligned_cols=47 Identities=15% Similarity=0.259 Sum_probs=35.6
Q ss_pred CchhhhhcccCCchHHHHHHHHHHHHHHHHHhhhc--CcEEEEEcCCCC
Q psy4442 514 SNTSWWKAVDGTSWLQNMHLLLVSAVNLAATIELE--SRSVLVHCSDGW 560 (655)
Q Consensus 514 ~~~~wls~Le~s~WL~~V~~lL~~a~~ia~~l~~~--g~sVLVhcsdGw 560 (655)
++..|.-..++..+-......-+.|+..|..+..+ +..|+||-.||+
T Consensus 7 ~~~~W~v~~eg~~ra~~~~~Tk~eAi~~Ar~~a~~~~~~el~Ih~~dG~ 55 (62)
T PF09954_consen 7 EDGGWAVKKEGAKRASKTFDTKAEAIEAARELAKNQGGGELIIHGRDGK 55 (62)
T ss_pred CCCCceEEeCCCcccccccCcHHHHHHHHHHHHHhCCCcEEEEECCCCe
Confidence 45678888888777777767777777777777544 688999999997
No 49
>KOG1718|consensus
Probab=24.33 E-value=1.8e+02 Score=29.59 Aligned_cols=60 Identities=28% Similarity=0.493 Sum_probs=45.1
Q ss_pred HHHHHHHhhhcCcEEEEEcCCCCCcchhHHHHHHHHh----------------CccccchhhH-HHHHHhHhhhcCCC
Q psy4442 538 AVNLAATIELESRSVLVHCSDGWDRTPQLVSLAEILL----------------DPYYRTVKGF-QVLVEREWLEFGHK 598 (655)
Q Consensus 538 a~~ia~~l~~~g~sVLVhcsdGwDrT~qisSLaqLll----------------DPyYRTi~GF-~~LIeKEWlsfGH~ 598 (655)
+..-.+.++..|--+||||--|-.|++-+| ||=||- -|.-|-=.|| +.||..|.--||--
T Consensus 83 vAD~I~~v~~~gG~TLvHC~AGVSRSAsLC-lAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~~ 159 (198)
T KOG1718|consen 83 VADKIHSVIMRGGKTLVHCVAGVSRSASLC-LAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGNA 159 (198)
T ss_pred HHHHHHHHHhcCCcEEEEEccccchhHHHH-HHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCCC
Confidence 444455566788899999999999999888 776653 3555666787 45999998888853
No 50
>KOG1720|consensus
Probab=23.64 E-value=1.2e+02 Score=31.69 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=23.3
Q ss_pred HHHHHHHhhhcCcEEEEEcCCCCCcchhHHH
Q psy4442 538 AVNLAATIELESRSVLVHCSDGWDRTPQLVS 568 (655)
Q Consensus 538 a~~ia~~l~~~g~sVLVhcsdGwDrT~qisS 568 (655)
-++|++.... |.-|.|||.-|-.||.-+.+
T Consensus 137 fv~i~e~~~~-~g~iaVHCkaGlGRTG~liA 166 (225)
T KOG1720|consen 137 FVKIVENAEK-GGKIAVHCKAGLGRTGTLIA 166 (225)
T ss_pred HHHHHHHHHh-cCeEEEEeccCCCchhHHHH
Confidence 4455666654 89999999999999996654
No 51
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=22.64 E-value=1e+02 Score=35.96 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=18.8
Q ss_pred EEEEcCCCCCcchhHHHHHHHHhC
Q psy4442 552 VLVHCSDGWDRTPQLVSLAEILLD 575 (655)
Q Consensus 552 VLVhcsdGwDrT~qisSLaqLllD 575 (655)
.+||||.|-.||..+++... |.|
T Consensus 469 PVVHCSAGVGRTGTFIAi~l-lk~ 491 (535)
T PRK15375 469 PMIHCLGGVGRTGTMAAALV-LKD 491 (535)
T ss_pred ceEEcCCCCchHHHHHHHHH-Hhc
Confidence 37999999999999998854 443
Done!