RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4442
(655 letters)
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex,
hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8
c.45.1.3 PDB: 1zvr_A*
Length = 528
Score = 259 bits (661), Expect = 1e-78
Identities = 119/299 (39%), Positives = 164/299 (54%), Gaps = 14/299 (4%)
Query: 351 SEWERMKFDEAPVRWRQCSANQNYELCETYPKYVIVPSGIDDGLLKSSADFRSNQRFPVV 410
E+ R WR N+ YELC+TYP ++VP+ I D LK A FRS R PV+
Sbjct: 144 LEYRRQGIPNES--WRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVL 201
Query: 411 VWRHQKNGAVIARSSQPQVGVLGWRKKEDEMLLEQITKAGSGGDESSKRFDRENWNRYDL 470
W H ++ A I R SQP VGV G R KEDE L+ I + + + R +
Sbjct: 202 SWIHPESQATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARP---SVNA 258
Query: 471 IVPKAKKEGIGESQPFRE-----RTLPGKDEIRSGWWKAVDGTSWRAPSNTSWWKAVDGT 525
+ KAK G ++ + +R K + T W ++ T
Sbjct: 259 VANKAKGGGYESEDAYQNAELVFLDIHNIHVMRESLRKLKEIVYPN-IEETHWLSNLEST 317
Query: 526 SWLQNMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQ 585
WL+++ L+L A+ +A +E SV+VH SDGWDRT QL SLA ++LD YYRT++GF+
Sbjct: 318 HWLEHIKLILAGALRIADKVESGKTSVVVHSSDGWDRTAQLTSLAMLMLDGYYRTIRGFE 377
Query: 586 VLVEREWLEFGHKFDDRCG---RNDKSSERSPVFLQWLDCVYQLLTQFPTEFQFNSMFL 641
VLVE+EWL FGH+F R G +N ++RSPVFLQ++DCV+Q+ QFPT F+FN FL
Sbjct: 378 VLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFL 436
Score = 56.8 bits (136), Expect = 1e-08
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 26 NAALFVKLAQHTYANLFGTFLCNSSKDREDKMVTSQTFSVWKFL--NHGSYRNHLYNENN 83
N + + H Y+ LFGTFLCNS + R + + +T S+W ++ + N LY +
Sbjct: 432 NEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYGSYS 491
Score = 41.0 bits (95), Expect = 0.001
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 20/88 (22%)
Query: 119 IPKLNGE----------YYDYVGSTVDGKLCLSNYRLCHQDNNGSNASITFFNIPLGLIE 168
P L GE Y V G L ++NYRL + + + LG+I
Sbjct: 7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFV--LDASLGVIN 64
Query: 169 NVE--------IKEVHWLQIVCKDVTSC 188
VE + + L+ VCKD+ +
Sbjct: 65 RVEKIGGASSRGENSYGLETVCKDIRNL 92
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex,
hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3
PDB: 1m7r_A
Length = 657
Score = 257 bits (658), Expect = 5e-77
Identities = 119/299 (39%), Positives = 162/299 (54%), Gaps = 14/299 (4%)
Query: 351 SEWERMKFDEAPVRWRQCSANQNYELCETYPKYVIVPSGIDDGLLKSSADFRSNQRFPVV 410
E+ R WR N+ YELC+TYP ++VP+ I D LK A FRS R PV+
Sbjct: 216 LEYRRQGIPNES--WRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVL 273
Query: 411 VWRHQKNGAVIARSSQPQVGVLGWRKKEDEMLLEQITKAGSGGDESSKRFDRENWNRYDL 470
W H ++ A I R SQP VGV G R KEDE L+ I + + + R +
Sbjct: 274 SWIHPESQATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARP---SVNA 330
Query: 471 IVPKAKKEGIGESQ-----PFRERTLPGKDEIRSGWWKAVDGTSWRAPSNTSWWKAVDGT 525
+ KAK G + +R K + T W ++ T
Sbjct: 331 VANKAKGGGYESEDAYQNAELVFLDIHNIHVMRESLRKLKEIVYPN-IEETHWLSNLEST 389
Query: 526 SWLQNMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQ 585
WL+++ L+L A+ +A +E SV+VH SDGWDRT QL SLA ++LD YYRT++GF+
Sbjct: 390 HWLEHIKLILAGALRIADKVESGKTSVVVHSSDGWDRTAQLTSLAMLMLDGYYRTIRGFE 449
Query: 586 VLVEREWLEFGHKFDDRCG---RNDKSSERSPVFLQWLDCVYQLLTQFPTEFQFNSMFL 641
VLVE+EWL FGH+F R G +N ++RSPVFLQ++DCV+Q+ QFPT F+FN FL
Sbjct: 450 VLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFL 508
Score = 58.1 bits (139), Expect = 5e-09
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 26 NAALFVKLAQHTYANLFGTFLCNSSKDREDKMVTSQTFSVWKFLN--HGSYRNHLYNENN 83
N + + H Y+ LFGTFLCNS + R + + +T S+W ++N + N LY +
Sbjct: 504 NEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYGSYS 563
Score = 41.9 bits (97), Expect = 7e-04
Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 20/91 (21%)
Query: 116 EPSIPKLNGE----------YYDYVGSTVDGKLCLSNYRLCHQDNNGSNASITFFNIPLG 165
P L GE Y V G L ++NYRL + + + LG
Sbjct: 76 MEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFV--LDASLG 133
Query: 166 LIENVEIKEVHW--------LQIVCKDVTSC 188
+I VE L+ VCKD+ +
Sbjct: 134 VINRVEKIGGASSRGENSYGLETVCKDIRNL 164
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Length = 512
Score = 233 bits (596), Expect = 2e-69
Identities = 112/296 (37%), Positives = 161/296 (54%), Gaps = 8/296 (2%)
Query: 351 SEWERMKFDEAPVRWRQCSANQNYELCETYPKYVIVPSGIDDGLLKSSADFRSNQRFPVV 410
E++RM W+ AN++Y++CETYP+ + VP ++ S+ FRS RFPV+
Sbjct: 132 EEYKRMGVPN--SHWQLSDANRDYKICETYPRELYVPRIASKPIIVGSSKFRSKGRFPVL 189
Query: 411 VWRHQKNGAVIARSSQPQVGVLGWRKKEDEMLLEQITKAGSGGDESSKRFDRENWNRYDL 470
+ HQ A I R SQP G R EDE LL+ I+KA R N
Sbjct: 190 SYYHQDKEAAICRCSQPLSG-FSARCLEDEHLLQAISKANPVNRYMYVMDTRPKLNAMAN 248
Query: 471 IVPKAKKEGIGESQPFRERTLPGKDEI---RSGWWKAVDGTSWRAPSNTSWWKAVDGTSW 527
E ++ G + I RS K ++ + S ++ ++ + W
Sbjct: 249 RAAGKGYE-NEDNYSNIRFQFVGIENIHVMRSSLQKLLEVNGTKGLSVNDFYSGLESSGW 307
Query: 528 LQNMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQVL 587
L+++ ++ +AV LA I +E+ SVLVHCSDGWDRT Q+ SL +LLD YYRT+KGF VL
Sbjct: 308 LRHIKAVMDAAVFLAKAITVENASVLVHCSDGWDRTSQVCSLGSLLLDSYYRTIKGFMVL 367
Query: 588 VEREWLEFGHKFDDRCG-RNDKSSERSPVFLQWLDCVYQLLTQFPTEFQFNSMFLF 642
+E++W+ FGHKF +RCG + E SPVF Q+L+CV+ L QFP F+F+ FL
Sbjct: 368 IEKDWISFGHKFSERCGQLDGDPKEVSPVFTQFLECVWHLTEQFPQAFEFSEAFLL 423
Score = 55.6 bits (133), Expect = 3e-08
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 26 NAALFVKLAQHTYANLFGTFLCNSSKDREDKMVTSQTFSVWKFLN--HGSYRNHLYNENN 83
+ A +++ +H ++ FG FL N K+RE+ + +T+S+W FL Y N LY+ +
Sbjct: 418 SEAFLLQIHEHIHSCQFGNFLGNCQKEREELKLKEKTYSLWPFLLEDQKKYLNPLYSSES 477
Query: 84 CE 85
Sbjct: 478 HR 479
Score = 40.6 bits (94), Expect = 0.001
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 9/67 (13%)
Query: 127 YDYVGSTVDGKLCLSNYRLCHQDNNGSNASITFFNIPLGLIENVE----IKEVHWLQIVC 182
+ ++ G L L+ L D++ I I +VE L I C
Sbjct: 18 FSTSNKSLTGTLYLTATHLLFIDSHQK-----ETWILHHHIASVEKLALTTSGCPLVIQC 72
Query: 183 KDVTSCK 189
K+ +
Sbjct: 73 KNFRTVH 79
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.2 bits (148), Expect = 9e-10
Identities = 87/518 (16%), Positives = 152/518 (29%), Gaps = 191/518 (36%)
Query: 204 RSHFTVTLMEPSDRRGGGTEHELSSV--------SY--RNVQSVKTVPYPPCSYRDTSKA 253
+ F L EP++ G + E ++ Y V+ P +
Sbjct: 34 QEQFNKILPEPTE--GFAADDEPTTPAELVGKFLGYVSSLVE-----PSKVGQFDQVLNL 86
Query: 254 EWTTFKQDCTTRILQGEGSKRGKNEPYPRV--LYRDTFQSEGHVQKRVTTYLILRMLVQG 311
T F+ L+G N+ + L ++ + ++ + Y+ R++ +
Sbjct: 87 CLTEFENC----YLEG-------NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 312 TFKRGTRS--------KEVRLYLVY--QGPFQCVRLTYRSVLPTGTRSTSEWERMKFDEA 361
F + + S +L ++ QG +T ++ F+E
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQG------------------NTDDY----FEE- 172
Query: 362 PVRWRQCSANQNYELCETYPKYV---IVPSG-IDDGLLKSSADFRS--NQRFPVVVWRHQ 415
+R +L +TY V I S L++++ D Q ++ W
Sbjct: 173 -LR----------DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 416 KNGA------VIARSSQPQVG------------VLGWRKKEDEMLLEQITKAGSGGDE-- 455
+ + S P +G +LG+ E L K +G +
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE----LRSYLKGATGHSQGL 277
Query: 456 -------SSKRFDRENWNRYDLIVPKAKKE--GIG-ESQ-PFRERTLPG---KDEIRSGW 501
+ +W + + V KA IG + +LP +D + +
Sbjct: 278 VTAVAIAETD-----SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN- 331
Query: 502 WKAVDGT-----SWRAPSNTSWWKAVDGTSWLQNMHL-----LLVSAVNLAATIELESRS 551
+G S + V+ T N HL + +S VN
Sbjct: 332 ----EGVPSPMLSISNLTQEQVQDYVNKT----NSHLPAGKQVEISLVN--------GAK 375
Query: 552 VLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQVLVEREWLEFGHKFDDRCGRNDKS-- 609
LV S G PQ SL L+ R K D+S
Sbjct: 376 NLV-VS-G---PPQ--SLY--GLNLTLRKAK-------------------APSGLDQSRI 407
Query: 610 --SERSPVFLQWLDCVYQLLTQFPTEFQFNSMFLFPTE 645
SER F + L P F+S L P
Sbjct: 408 PFSERKLKF------SNRFL---PVASPFHSHLLVPAS 436
Score = 53.1 bits (127), Expect = 2e-07
Identities = 120/637 (18%), Positives = 187/637 (29%), Gaps = 244/637 (38%)
Query: 69 LNHGSYRNHLYNENNCERVSMLKVLGTMPGIMLYP---LRE--------PVYEHKSLVEP 117
L+HGS +L +P + L+E P + EP
Sbjct: 11 LSHGSL-----------EHVLL-----VPTASFFIASQLQEQFNKILPEPTEGFAADDEP 54
Query: 118 -SIPKLNGEYYDYVGSTVDGKLCLSNYRLCHQDNNGS-----NASITFFNIPLGLIENVE 171
+ +L G++ YV S V+ G N +T F L N
Sbjct: 55 TTPAELVGKFLGYVSSLVE------------PSKVGQFDQVLNLCLTEFENCY-LEGN-- 99
Query: 172 IKEVHWL--QIVCKDVTSCKKGSGLGHVKPRYSSRSHFTVTLMEPSD-------RRG--- 219
++H L +++ ++ T+ K L +K ++R + S+ G
Sbjct: 100 --DIHALAAKLLQENDTTLVKTKEL--IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 220 -----GG---TEH---ELSSVSYRNVQSVKTVPYPPCSYRDTSKAEWTTFKQDCTTRI-- 266
GG T+ EL + Y +T Y D
Sbjct: 156 LVAIFGGQGNTDDYFEELRDL-Y------QT--YHV-------------LVGDLIKFSAE 193
Query: 267 -LQGEGSKRGKNEPYPRVLYRDTFQSEGHVQKRVTT----YLI-------LRMLVQ---- 310
L E + ++ T YL+ L ++Q
Sbjct: 194 TLSELIRTTLDAEKV----FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY 249
Query: 311 -GTFKR-GTRSKEVRLYLVYQGPFQCVRLTYRSVLPTGTRSTSEWERMKFDEAPVR---- 364
T K G E+R YL +G + +V T S WE F + +
Sbjct: 250 VVTAKLLGFTPGELRSYL--KGATGHSQGLVTAVAIAETDS---WES--FFVSVRKAITV 302
Query: 365 -----WRQCSANQNYELCETYPKYVIVPSGIDD----------------GL----LKSSA 399
R C E YP + PS ++D L ++
Sbjct: 303 LFFIGVR-C---Y-----EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 400 DFRSNQRFPVVVWRHQK------NGA---VIARSSQPQ--VG-VLGWRKKEDEMLLEQIT 447
+ ++N P ++ NGA V+ S PQ G L RK
Sbjct: 354 N-KTNSHLP----AGKQVEISLVNGAKNLVV--SGPPQSLYGLNLTLRKA---------- 396
Query: 448 KAGSGGDES----SKR---FDRENWNRYDLIVPKAKKEGIGESQPFRERTL-PGKDEIRS 499
KA SG D+S S+R F NR+ L V + PF L P D I
Sbjct: 397 KAPSGLDQSRIPFSERKLKFS----NRF-LPV----------ASPFHSHLLVPASDLINK 441
Query: 500 GWWKAVDGTSWRAPS------NTSWWKAVDGTSWLQNMHLLLVSAVNLAATIELESRSVL 553
K + S+ A +T DG+ L+ + + + I +
Sbjct: 442 DLVK--NNVSFNAKDIQIPVYDT-----FDGSD-LRVLSGSISE--RIVDCI-IRLP--- 487
Query: 554 VHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQVLVER 590
V W+ T Q + + P G VL R
Sbjct: 488 VK----WETTTQFKATHILDFGP--GGASGLGVLTHR 518
Score = 35.4 bits (81), Expect = 0.076
Identities = 43/288 (14%), Positives = 74/288 (25%), Gaps = 119/288 (41%)
Query: 9 CSNVVRHRLTQALVVMVNAALFVKLAQHTYANLFGTFLCNSSKD---------------- 52
SN+ + ++ Q V N+ L + +L N +K+
Sbjct: 341 ISNLTQEQV-QDYVNKTNSHL--PAGKQVEISLV-----NGAKNLVVSGPPQSLYGLNLT 392
Query: 53 -REDKMVTS--QT---FS------VWKFLN-----HGSYRNHLYNENNCERVSMLKVLGT 95
R+ K + Q+ FS +FL H L
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL---------------LV--PA 435
Query: 96 MPGIMLYPLREPV-YEHKSLVEPSIPKLNGEYYDYVGSTVDGKLCLSNYRLCHQDNNGSN 154
I ++ V + K + IP V T DG L +
Sbjct: 436 SDLINKDLVKNNVSFNAKDI---QIP---------VYDTFDGS------DLRVLSGS--- 474
Query: 155 ASITFFNIPLGLIENVEIKEVHWLQIVCKDVTSCKKGSGLGHVKPRYSSRSHFTVTLMEP 214
I +++ + V W T H+ +
Sbjct: 475 -------ISERIVDCIIRLPVKWETTTQFKAT---------HI-----------LDF--- 504
Query: 215 SDRRGGGTEHELSSVSYRNVQ--SVKTVPYPPCSYRDTSKAEWTTFKQ 260
G G L +++RN V+ + D + + FKQ
Sbjct: 505 ----GPGGASGLGVLTHRNKDGTGVRVI---VAGTLDINPDDDYGFKQ 545
Score = 32.7 bits (74), Expect = 0.47
Identities = 61/346 (17%), Positives = 96/346 (27%), Gaps = 139/346 (40%)
Query: 2 SAPVSKPCSNVVRHRLTQALVVMVNAALFVKLAQHTYANLF----GTFLCNSSKDREDKM 57
S P+S P + Q + + + KL T L G S+ +
Sbjct: 233 SIPISCPLIG-----VIQ----LAHYVVTAKLLGFTPGELRSYLKGATGH--SQG----L 277
Query: 58 VTSQTFSV---WK-FLNHGSYRNHLYNENNCERVSMLKVL---G-----TMPGIMLYPLR 105
VT+ + W+ F + VL G P L P
Sbjct: 278 VTAVAIAETDSWESFFVSV--------------RKAITVLFFIGVRCYEAYPNTSLPP-- 321
Query: 106 EPVYEHKSLVEPSIPKLNGEYYDYVGSTVDGK----LCLSNYRLCH------QDN----N 151
S++E S+ N E G L +SN + N
Sbjct: 322 -------SILEDSLE--NNE----------GVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 152 GSNASITFFNIPL-----GLIENVEIKEVHWLQIVCKDVTSCKKGSGL--GHV-----KP 199
G I+ N G ++ L + + K SGL + K
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQS--------LYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 200 RYSSRSHF-TVT------LMEPSDRRGGGTEHELSSVSYRNV----QSVKTVP-YPPCSY 247
++S+R F V L+ P+ ++ + NV + ++ +P Y
Sbjct: 415 KFSNR--FLPVASPFHSHLLVPA------SDLINKDLVKNNVSFNAKDIQ-IPVYDTFDG 465
Query: 248 RD-----------------TSKAEWTTFKQDCTTRILQ-GEGSKRG 275
D +W T Q T IL G G G
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG 511
Score = 30.0 bits (67), Expect = 3.5
Identities = 42/225 (18%), Positives = 74/225 (32%), Gaps = 81/225 (36%)
Query: 400 DFRSNQRFPVV--VW----RHQKNGAVIARSSQPQVGVLGWRKKEDEMLLEQI-----TK 448
D VW H K+ G+ +L+ +
Sbjct: 1634 DLYKT--SKAAQDVWNRADNHFKD-------------TYGFS------ILDIVINNPVNL 1672
Query: 449 AGSGGDESSKRFDRENWNRYDLIVPKAKKEGIGESQPFRERTLPGKDEIRSGWWKAVDGT 508
G E KR REN Y ++ + +G ++ E+ +E + +
Sbjct: 1673 TIHFGGEKGKRI-REN---YSAMIFETIVDGKLKT----EKIFKEINEHSTSY------- 1717
Query: 509 SWRAPSNTSWWKAVDGTSWLQNMHLLLVSAVNLAATIELESRSVLV-------HCSDG-- 559
++R+ + T + Q L L+ AA +L+S+ ++ H S G
Sbjct: 1718 TFRSEKGL-----LSATQFTQ-PALTLME---KAAFEDLKSKGLIPADATFAGH-SLGEY 1767
Query: 560 --WDRTPQLVSLAEIL-LDPYYRTVK--G--FQVLVEREWLEFGH 597
L SLA+++ ++ V G QV V R+ E G
Sbjct: 1768 AA------LASLADVMSIESLVEVVFYRGMTMQVAVPRD--ELGR 1804
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 5e-07
Identities = 79/523 (15%), Positives = 149/523 (28%), Gaps = 199/523 (38%)
Query: 73 SYRNHLYNEN------NCERVSMLKVLGTMPGIMLYPLREPVYEHKSLVEPSIPKLNGEY 126
R+ LYN+N N R+ L L LR K+++ ++G
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQ----ALLELR----PAKNVL------IDG-- 157
Query: 127 YDYVGSTVDGKLCL-----SNYRL-CHQDNNGSNASITFFNIPLGLIENVEIKEVHWLQI 180
+GS GK + +Y++ C D + WL
Sbjct: 158 --VLGS---GKTWVALDVCLSYKVQCKMDFK-----------------------IFWL-- 187
Query: 181 VCKDVTSCKKGSGL--------GHVKPRYSSRSHFTVTLMEPSDRRGGGTEHELSSVSY- 231
++ +C + + P ++SRS + + L S Y
Sbjct: 188 ---NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 232 ------RNVQSVKTVPYPPCSYRDTSKAEWTTFKQDC----TTR------ILQGEGSKRG 275
NVQ+ K W F C TTR L +
Sbjct: 245 NCLLVLLNVQNAKA---------------WNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 276 KNEPYPRVLYRDTFQSEGHVQKRVTTYLILRMLVQGTFKRGTRSKEVRLYLVYQGPFQCV 335
+ + L D + + L+L+ L R +++ ++ P +
Sbjct: 290 SLDHHSMTLTPD--EVKS---------LLLKYL-------DCRPQDLPREVLTTNPRRL- 330
Query: 336 RLTYRSVLPTGTR---STSE-WERMKFDE------------APVRWRQCSANQNYELCET 379
S++ R +T + W+ + D+ P +R+ ++
Sbjct: 331 -----SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-----FDRLSV 380
Query: 380 YPKYVIVPSG----------------IDDGLLKSSADFRSNQRFPVVVWRHQKNGAVIAR 423
+P +P+ + + L K S + + + + I
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--PS-----IYL 433
Query: 424 SSQPQVGVLGWRKKEDEM---LLEQ--ITKAGSGGDESSKRFDRENWNR--YDLIVPKAK 476
+ ++ + E + +++ I K D D+ ++ + L
Sbjct: 434 ELKVKL------ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL----KN 483
Query: 477 KEGIGESQPFRE-----RTLPGKDEIRSGWWKAVDGTSWRAPS 514
E FR R L K IR D T+W A
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQK--IRH------DSTAWNASG 518
Score = 40.2 bits (93), Expect = 0.003
Identities = 44/294 (14%), Positives = 77/294 (26%), Gaps = 91/294 (30%)
Query: 371 NQNYE-LCETYPKYVIVPSGIDDGLLKSSAD--FRSNQRF-PVVVWRHQ-----KNGAVI 421
NY+ L PS + + D + NQ F V R Q + +
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTR-MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 422 ARSSQPQVGVLGWRKKEDEMLLEQITKAGSGGDESSKRFDRENWNRYDLIVPKAKKEGIG 481
R + V + G + GSG K W + + +
Sbjct: 147 LRPA-KNVLIDG-------V-------LGSG-----K-----TW----VALDVCLSYKVQ 177
Query: 482 ESQPF-------RERTLPGKD---------EIRSGWWKAVDGTSWRAPSNTSWWKAVDGT 525
F + P +I W D +S +A
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS-NIKLRIHSIQAELRR 236
Query: 526 SWLQNMH---LLLVSAVNLAATIE---LESRSVLVHCSDGWDRTPQLVSLAEILLDPYYR 579
+ LL++ V A L + +L+ T + + + L
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCK-ILL--------TTRFKQVTDFLSAATTT 287
Query: 580 TVKGFQVLVEREWLEFGHKFDDRCGRNDKSSERSPVFLQWLDCVYQLLTQFPTE 633
+ ++ + D+ + L++LDC Q L P E
Sbjct: 288 -----HISLDHHSMTLTP---------DEVKS---LLLKYLDCRPQDL---PRE 321
>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel
beta sheet with flanking helices, structural genomics,
PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5
PDB: 2oz5_A*
Length = 296
Score = 31.1 bits (69), Expect = 1.2
Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 10/92 (10%)
Query: 548 ESRSVLVHCSDGWDRTPQL---------VSLAEILLDPYYRTVKGFQVLVEREWLEFGHK 598
R VL HC G DRT + + I+ D Y R+ L R +
Sbjct: 172 AGRPVLTHCFAGKDRTGFVVALVLEAVGLDRDVIVAD-YLRSNDSVPQLRARISEMIQQR 230
Query: 599 FDDRCGRNDKSSERSPVFLQWLDCVYQLLTQF 630
FD + ++ + L + L
Sbjct: 231 FDTELAPEVVTFTKARLSDGVLGVRAEYLAAA 262
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint
center for structural genomics, JCSG; HET: MSE; 1.40A
{Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Length = 157
Score = 29.5 bits (66), Expect = 1.8
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 541 LAATIELESRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQVLVEREWLEFGHKFD 600
AA + + + VLVHC + R L Y+ +G + + + +
Sbjct: 89 FAAMDQHKGKDVLVHCLANY-RASAFAYL--------YQLKQGQNPNMAQTMTPWNDELA 139
Query: 601 DR 602
Sbjct: 140 IY 141
>1z70_X C-alpha-formyglycine-generating enzyme; formylglycine, multiple
sulfatase deficiency, cysteine sulfe oxidoreductase;
HET: OCS NAG CXS; 1.15A {Homo sapiens} SCOP: d.169.1.7
PDB: 1y1f_X* 1y1e_X* 1y1h_X* 1y1i_X* 1y1g_X* 1y1j_X*
2aii_X* 2aij_X* 2aft_X* 2aik_X* 2hi8_X* 2hib_X* 2afy_X*
Length = 311
Score = 29.8 bits (67), Expect = 3.0
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 15/62 (24%)
Query: 482 ESQPFRERTLPGKDEIRSGWWKAVDGTSWRAPS---------------NTSWWKAVDGTS 526
+ +T + + WW V G +WR P + SW AV +
Sbjct: 88 GMLSEQVKTNIQQAVAAAPWWLPVKGANWRHPEGPDSTILHRPDHPVLHVSWNDAVAYCT 147
Query: 527 WL 528
W
Sbjct: 148 WA 149
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 28.5 bits (64), Expect = 3.8
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 535 LVSAVNLAATIELESRSVLVHCSDGWDRTPQLV 567
+ V + +V VHC+ G+ RT ++
Sbjct: 75 IDRFVQIVDEANARGEAVGVHCALGFGRTGTML 107
>2q17_A Formylglycine generating enzyme; FGE, sulfatase, unknown function;
2.10A {Streptomyces coelicolor}
Length = 346
Score = 29.2 bits (65), Expect = 4.5
Identities = 11/70 (15%), Positives = 15/70 (21%), Gaps = 15/70 (21%)
Query: 474 KAKKEGIGESQPFRERTLPGKDEIRSGWWKAVDGTSWRAPS---------------NTSW 518
+ + + WW V G WR P + SW
Sbjct: 119 RFGSSAVFHLVVAAPDADVLGSAAGAPWWINVRGAHWRRPEGARSDITGRPNHPVVHVSW 178
Query: 519 WKAVDGTSWL 528
A W
Sbjct: 179 NDATAYARWA 188
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity
phosphatase, carbohydrate BIND hydrolase; 2.40A
{Arabidopsis thaliana}
Length = 294
Score = 28.6 bits (63), Expect = 5.9
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 529 QNMHLLLVSAVN-LAATIELESRSVLVHCSDGWDRTPQLV 567
++ + L + V L ++ VH + G R P +
Sbjct: 85 FDLRMRLPAVVGTLYKAVKRNGGVTYVHSTAGMGRAPAVA 124
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 28.9 bits (65), Expect = 6.0
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 202 SSRSH--FTVTLMEPSDRRGGGTEHELSS 228
SSRSH FT+ L + E SS
Sbjct: 265 SSRSHAVFTIMLKQIHHDLETDDTTERSS 293
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 27.9 bits (62), Expect = 6.8
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 539 VNLAATIELESRSVLVHCSDGWDRTPQLVSLAEIL 573
+ + + E LVHC G RT +++ IL
Sbjct: 79 LTIMKWLLSEKEGNLVHCVGGIGRTGTILASYLIL 113
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 28.3 bits (64), Expect = 7.5
Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 202 SSRSH--FTVTLMEPSDRRGGGTEHELSS 228
SSRSH F +TL GT E
Sbjct: 216 SSRSHAVFKITLTHTLYDVKSGTSGEKVG 244
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 28.3 bits (64), Expect = 7.7
Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 202 SSRSH--FTVTLMEPSDRRGGGTEHELSS 228
SSRSH F + + E S
Sbjct: 214 SSRSHAVFNIIFTQKRHDAETNITTEKVS 242
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A
{Arabidopsis thaliana}
Length = 76
Score = 26.3 bits (58), Expect = 9.3
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 10/42 (23%)
Query: 271 GSKRGKNEPYPRVLYRDTFQS---EGHVQKR-------VTTY 302
G K K PYPR YR + + HV++ +TTY
Sbjct: 24 GQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTY 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.418
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,964,226
Number of extensions: 579095
Number of successful extensions: 1155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1138
Number of HSP's successfully gapped: 39
Length of query: 655
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 555
Effective length of database: 3,909,693
Effective search space: 2169879615
Effective search space used: 2169879615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.7 bits)