RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4442
         (655 letters)



>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2,
           C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 387

 Score =  292 bits (748), Expect = 1e-93
 Identities = 126/319 (39%), Positives = 172/319 (53%), Gaps = 26/319 (8%)

Query: 351 SEWERMKFDEAPVRWRQCSANQNYELCETYPKYVIVPSGIDDGLLKSSADFRSNQRFPVV 410
            E+ R         WR    N+ YELC+TYP  ++VP+ I D  LK  A FRS  R PV+
Sbjct: 15  LEYRRQGIPN--ESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVL 72

Query: 411 VWRHQKNGAVIARSSQPQVGVLGWRKKEDEMLLEQITKAGSGGDESSKRFDRENWNRYDL 470
            W H ++ A I R SQP VGV G R KEDE  L+ I  + +   +S K F  +     + 
Sbjct: 73  SWIHPESQATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNA---QSHKIFIFDARPSVNA 129

Query: 471 IVPKAKKEGIGESQPFRE-----RTLPGKDEIRSGWWKAVDGTSWRAPSNTSWWKAVDGT 525
           +  KAK  G      ++        +     +R    K  +         T W   ++ T
Sbjct: 130 VANKAKGGGYESEDAYQNAELVFLDIHNIHVMRESLRKLKEIVY-PNIEETHWLSNLEST 188

Query: 526 SWLQNMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQ 585
            WL+++ L+L  A+ +A  +E    SV+VH SDGWDRT QL SLA ++LD YYRT++GF+
Sbjct: 189 HWLEHIKLILAGALRIADKVESGKTSVVVHSSDGWDRTAQLTSLAMLMLDGYYRTIRGFE 248

Query: 586 VLVEREWLEFGHKFDDRCG---RNDKSSERSPVFLQWLDCVYQLLTQFPTEFQFNSMFL- 641
           VLVE+EWL FGH+F  R G   +N   ++RSPVFLQ++DCV+Q+  QFPT F+FN  FL 
Sbjct: 249 VLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLI 308

Query: 642 ----------FPTEFQFNS 650
                     F T F  NS
Sbjct: 309 TILDHLYSCLFGT-FLCNS 326



 Score = 62.3 bits (151), Expect = 5e-11
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 26  NAALFVKLAQHTYANLFGTFLCNSSKDREDKMVTSQTFSVWKFLN--HGSYRNHLYNENN 83
           N    + +  H Y+ LFGTFLCNS + R  + +  +T S+W ++N     + N LY   +
Sbjct: 303 NEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYGSYS 362


>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2,
           N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 125

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 20/89 (22%)

Query: 119 IPKLNGE----------YYDYVGSTVDGKLCLSNYRLCHQDNNGSNASITFFNIPLGLIE 168
            P L GE          Y       V G L ++NYRL  +        +   +  LG+I 
Sbjct: 3   PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFV--LDASLGVIN 60

Query: 169 NVEI--------KEVHWLQIVCKDVTSCK 189
            VE         +  + L+ VCKD+ + +
Sbjct: 61  RVEKIGGASSRGENSYGLETVCKDIRNLR 89


>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36,
           VPS36 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 129

 Score = 31.0 bits (70), Expect = 0.17
 Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 3/40 (7%)

Query: 135 DGKLCLSNYRLCHQDNNGSNASITFFNIPLGLIENVEIKE 174
            G L LS +RL  +D            I L  I  +E + 
Sbjct: 35  AGTLLLSTHRLIWRDQKNHECC---MAILLSQIVFIEEQA 71


>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase
           MsrB {Bacillus subtilis [TaxId: 1423]}
          Length = 143

 Score = 27.6 bits (61), Expect = 3.1
 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 6/78 (7%)

Query: 124 GEYYDY--VGSTVDGKLCLSNYRLCHQDNNGSNASITFFNIPLGLIENVEIKEVHWLQIV 181
            EY+D+   G  VD       +    +  +      +F        E VE K      ++
Sbjct: 31  NEYWDHKEEGLYVDIVSGKPLFTSKDK-FDSQCGWPSFTKPI---EEEVEEKLDTSHGMI 86

Query: 182 CKDVTSCKKGSGLGHVKP 199
             +V S    S LGHV  
Sbjct: 87  RTEVRSRTADSHLGHVFN 104


>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum
           majus) [TaxId: 4151]}
          Length = 63

 Score = 25.7 bits (56), Expect = 4.0
 Identities = 7/52 (13%), Positives = 14/52 (26%), Gaps = 8/52 (15%)

Query: 434 WRKKEDEMLLEQITKAGSGGDESSKRF--------DRENWNRYDLIVPKAKK 477
           W  KE++     +        +               E    Y+++V   K 
Sbjct: 4   WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 55


>d3cdda1 b.106.1.1 (A:181-348) Baseplate protein gpP {Shewanella
           oneidensis [TaxId: 70863]}
          Length = 168

 Score = 26.7 bits (59), Expect = 6.5
 Identities = 8/64 (12%), Positives = 16/64 (25%), Gaps = 14/64 (21%)

Query: 381 PKYVIVPSGIDDGLLKSSADFRSNQRFPVVVWRHQKNGAVIARSSQPQVGVLGWRKKEDE 440
           P  ++               +   +               I +S+  +  V GWR  +  
Sbjct: 69  PLIIVNEEVTTAEGAAKRGQWERQRS--------------IGKSNMAEYTVTGWRIPQTG 114

Query: 441 MLLE 444
            L  
Sbjct: 115 KLWN 118


>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 272

 Score = 26.7 bits (58), Expect = 7.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 538 AVNLAATIELESRSVLVHCSDGWDRTPQLVSLAEILLD 575
           A++   T+    R VL HC  G DRT  +V+L    + 
Sbjct: 139 ALHRVVTLLAAGRPVLTHCFAGKDRTGFVVALVLEAVG 176


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.418 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,496,752
Number of extensions: 118327
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 11
Length of query: 655
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 564
Effective length of database: 1,158,166
Effective search space: 653205624
Effective search space used: 653205624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.6 bits)