BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4445
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B5H|A Chain A, 1.5 A Resolution Crystal Structure Of Recombinant R.
Norvegicus Cysteine Dioxygenase
pdb|2GH2|A Chain A, 1.5 A Resolution R. Norvegicus Cysteine Dioxygenase
Structure Crystallized In The Presence Of Cysteine
pdb|3ELN|A Chain A, A Putative Fe2+-Bound Persulfenate Intermediate In
Cysteine Dioxygenase
Length = 200
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 71/84 (84%)
Query: 83 LADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFN 142
LADL+ LH +F+ D VNV+ V+ V+++Y+SNP EW Y+KFD+Y+YTRNLVD GN KFN
Sbjct: 12 LADLIRILHELFAGDEVNVEEVQAVLEAYESNPAEWALYAKFDQYRYTRNLVDQGNGKFN 71
Query: 143 LMILCWGEGHGSSVHDHADAHCFM 166
LMILCWGEGHGSS+HDH D+HCF+
Sbjct: 72 LMILCWGEGHGSSIHDHTDSHCFL 95
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 60/83 (72%), Gaps = 8/83 (9%)
Query: 187 YTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDGE 246
YTRNLVD GN KFNLMILCWGEGHGSS+HDH D+HCF+K+L G L ET + WP +
Sbjct: 58 YTRNLVDQGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWP------D 111
Query: 247 EKPLQVIGKS--PLKLNEVCYIN 267
+K ++I KS L+ N+ YIN
Sbjct: 112 KKSNEMIKKSERTLRENQCAYIN 134
>pdb|2IC1|A Chain A, Crystal Structure Of Human Cysteine Dioxygenase In Complex
With Substrate Cysteine
Length = 205
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 72/84 (85%)
Query: 83 LADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFN 142
LADL+ LH++F+ D VNV+ V+ +M++Y+S+P EW Y+KFD+Y+YTRNLVD GN KFN
Sbjct: 17 LADLIRILHQLFAGDEVNVEEVQAIMEAYESDPTEWAMYAKFDQYRYTRNLVDQGNGKFN 76
Query: 143 LMILCWGEGHGSSVHDHADAHCFM 166
LMILCWGEGHGSS+HDH ++HCF+
Sbjct: 77 LMILCWGEGHGSSIHDHTNSHCFL 100
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 61/83 (73%), Gaps = 8/83 (9%)
Query: 187 YTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDGE 246
YTRNLVD GN KFNLMILCWGEGHGSS+HDH ++HCF+KML G L ET +AWP +
Sbjct: 63 YTRNLVDQGNGKFNLMILCWGEGHGSSIHDHTNSHCFLKMLQGNLKETLFAWP------D 116
Query: 247 EKPLQVIGKSP--LKLNEVCYIN 267
+K +++ KS L+ N+ YIN
Sbjct: 117 KKSNEMVKKSERVLRENQCAYIN 139
>pdb|2ATF|A Chain A, X-Ray Structure Of Cysteine Dioxygenase Type I From Mus
Musculus Mm.241056
pdb|2Q4S|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cysteine Dioxygenase Type I From Mus Musculus Mm.241056
Length = 200
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 55/84 (65%), Positives = 70/84 (83%)
Query: 83 LADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFN 142
LADL+ LH +F+ D VNV+ V+ V+++Y+SNP EW Y+KFD+Y+YTRNLVD GN KFN
Sbjct: 12 LADLIRILHELFAGDEVNVEEVQAVLEAYESNPAEWALYAKFDQYRYTRNLVDQGNGKFN 71
Query: 143 LMILCWGEGHGSSVHDHADAHCFM 166
L ILCWGEGHGSS+HDH D+HCF+
Sbjct: 72 LXILCWGEGHGSSIHDHTDSHCFL 95
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 58/83 (69%), Gaps = 8/83 (9%)
Query: 187 YTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDGE 246
YTRNLVD GN KFNL ILCWGEGHGSS+HDH D+HCF+K+L G L ET + WP +
Sbjct: 58 YTRNLVDQGNGKFNLXILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWP------D 111
Query: 247 EKPLQVIGKS--PLKLNEVCYIN 267
+K + I KS L+ N+ YIN
Sbjct: 112 KKSNEXIKKSERTLRENQCAYIN 134
>pdb|3NRR|A Chain A, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
pdb|3NRR|B Chain B, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
Length = 515
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 16/80 (20%)
Query: 163 HCFMTNETKKSLYTSSLNKVSCTLYTRNLVDAGNDKFNLM---ILCW------GEGHGSS 213
HCF Y S NK+SC ++ R+ FN+ IL G G G
Sbjct: 398 HCFF------QFYVSD-NKLSCMMHQRSCDLGLGVPFNIASYSILTAMVAQVCGLGLGEF 450
Query: 214 VHDHADAHCFMKMLDGCLTE 233
VH+ ADAH ++ +D T+
Sbjct: 451 VHNLADAHIYVDHVDAVTTQ 470
>pdb|3I3R|A Chain A, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3I3R|B Chain B, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3K2H|A Chain A, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3K2H|B Chain B, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3KJR|A Chain A, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
pdb|3KJR|B Chain B, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
Length = 511
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 16/81 (19%)
Query: 163 HCFMTNETKKSLYTSSLNKVSCTLYTRNLVDAGNDKFNLM---ILCW------GEGHGSS 213
HCF Y S NK+SC ++ R+ FN+ IL G G G
Sbjct: 394 HCFF------QFYVSD-NKLSCMMHQRSCDLGLGVPFNIASYSILTAMVAQVCGLGLGEF 446
Query: 214 VHDHADAHCFMKMLDGCLTET 234
VH+ ADAH ++ +D T+
Sbjct: 447 VHNLADAHIYVDHVDAVTTQI 467
>pdb|2H0V|A Chain A, Crystal Structure Of A Putative Quercetin 2,3-dioxygenase
(yxag, Bsu39980) From Bacillus Subtilis At 2.60 A
Resolution
pdb|2H0V|B Chain B, Crystal Structure Of A Putative Quercetin 2,3-dioxygenase
(yxag, Bsu39980) From Bacillus Subtilis At 2.60 A
Resolution
Length = 338
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 196 NDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTET 234
D F +++L G+G +H H D H + +LDG L T
Sbjct: 44 GDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELT 82
>pdb|1Z27|A Chain A, Crystal Structure Of Native Pvs25, An Ookinete Protein
From Plasmodium Vivax.
pdb|1Z3G|A Chain A, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
pdb|1Z3G|B Chain B, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
Length = 186
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 2 KEVTRESCGDTGKCLQNNDKTLVNKAEAREFCGDIERYSCSNDKTLVSKC 51
KE ++CG+ G+C++N D VN + CG IE Y+ D ++ C
Sbjct: 49 KETLGKACGEFGQCIENPDPAQVNMYK----CGCIEGYTLKEDTCVLDVC 94
>pdb|1Y3T|A Chain A, Crystal Structure Of Yxag, A Dioxygenase From Bacillus
Subtilis
pdb|1Y3T|B Chain B, Crystal Structure Of Yxag, A Dioxygenase From Bacillus
Subtilis
Length = 337
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 196 NDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTET 234
D F +++L G+G +H H D H + +LDG L T
Sbjct: 43 GDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELT 81
>pdb|1Z1Y|A Chain A, Crystal Structure Of Methylated Pvs25, An Ookinete
Protein From Plasmodium Vivax
pdb|1Z1Y|B Chain B, Crystal Structure Of Methylated Pvs25, An Ookinete
Protein From Plasmodium Vivax
Length = 186
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 3 EVTRESCGDTGKCLQNNDKTLVNKAEAREFCGDIERYSCSNDKTLVSKC 51
E +CG+ G+C++N D VN CG IE Y+ D ++ C
Sbjct: 50 ETLGXACGEFGQCIENPDPAQVNMY----XCGCIEGYTLXEDTCVLDVC 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,415,888
Number of Sequences: 62578
Number of extensions: 416326
Number of successful extensions: 814
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 801
Number of HSP's gapped (non-prelim): 18
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)