BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4445
(279 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NWZ9|CDO1_DANRE Cysteine dioxygenase type 1 OS=Danio rerio GN=cdo1 PE=2 SV=1
Length = 201
Score = 135 bits (339), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%), Gaps = 3/110 (2%)
Query: 83 LADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFN 142
L DL++ LH+IF D +NV+ V+ +M+SY+SNP +W K++KFD+Y+YTRNLVD GN KFN
Sbjct: 12 LEDLIKTLHQIFQSDSINVEEVQNLMESYQSNPQDWMKFAKFDQYRYTRNLVDEGNGKFN 71
Query: 143 LMILCWGEGHGSSVHDHADAHCF---MTNETKKSLYTSSLNKVSCTLYTR 189
LMILCWGEGHGSS+HDH D+HCF + + K++L+ K+ + R
Sbjct: 72 LMILCWGEGHGSSIHDHTDSHCFLKLLQGQLKETLFDWPDRKLQSGMKPR 121
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 57/81 (70%), Gaps = 3/81 (3%)
Query: 187 YTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDGE 246
YTRNLVD GN KFNLMILCWGEGHGSS+HDH D+HCF+K+L G L ET + WP
Sbjct: 58 YTRNLVDEGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGQLKETLFDWPDRKLQSG 117
Query: 247 EKPLQVIGKSPLKLNEVCYIN 267
KP G+S L+ N+ YIN
Sbjct: 118 MKPR---GQSVLQENQCAYIN 135
>sp|Q3SZU4|CDO1_BOVIN Cysteine dioxygenase type 1 OS=Bos taurus GN=CDO1 PE=2 SV=1
Length = 200
Score = 135 bits (339), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 55/84 (65%), Positives = 72/84 (85%)
Query: 83 LADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFN 142
LADL+ LH++F+ + +NV+ V+ VM++Y+SNP EW Y+KFD+Y+YTRNLVD GN KFN
Sbjct: 12 LADLIRVLHQLFAGEEINVEEVQAVMEAYESNPAEWAVYAKFDQYRYTRNLVDQGNGKFN 71
Query: 143 LMILCWGEGHGSSVHDHADAHCFM 166
LMILCWGEGHGSS+HDH D+HCF+
Sbjct: 72 LMILCWGEGHGSSIHDHTDSHCFL 95
Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 61/83 (73%), Gaps = 8/83 (9%)
Query: 187 YTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDGE 246
YTRNLVD GN KFNLMILCWGEGHGSS+HDH D+HCF+KML G L ET +AWP +
Sbjct: 58 YTRNLVDQGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKMLQGNLKETLFAWP------D 111
Query: 247 EKPLQVIGKSP--LKLNEVCYIN 267
+K ++I KS L+ N+ YIN
Sbjct: 112 KKSNEMIKKSERILRENQCAYIN 134
>sp|P21816|CDO1_RAT Cysteine dioxygenase type 1 OS=Rattus norvegicus GN=Cdo1 PE=1 SV=1
Length = 200
Score = 134 bits (337), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 71/84 (84%)
Query: 83 LADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFN 142
LADL+ LH +F+ D VNV+ V+ V+++Y+SNP EW Y+KFD+Y+YTRNLVD GN KFN
Sbjct: 12 LADLIRILHELFAGDEVNVEEVQAVLEAYESNPAEWALYAKFDQYRYTRNLVDQGNGKFN 71
Query: 143 LMILCWGEGHGSSVHDHADAHCFM 166
LMILCWGEGHGSS+HDH D+HCF+
Sbjct: 72 LMILCWGEGHGSSIHDHTDSHCFL 95
Score = 101 bits (251), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 60/83 (72%), Gaps = 8/83 (9%)
Query: 187 YTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDGE 246
YTRNLVD GN KFNLMILCWGEGHGSS+HDH D+HCF+K+L G L ET + WP +
Sbjct: 58 YTRNLVDQGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWP------D 111
Query: 247 EKPLQVIGKS--PLKLNEVCYIN 267
+K ++I KS L+ N+ YIN
Sbjct: 112 KKSNEMIKKSERTLRENQCAYIN 134
>sp|P60334|CDO1_MOUSE Cysteine dioxygenase type 1 OS=Mus musculus GN=Cdo1 PE=1 SV=1
Length = 200
Score = 134 bits (337), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 71/84 (84%)
Query: 83 LADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFN 142
LADL+ LH +F+ D VNV+ V+ V+++Y+SNP EW Y+KFD+Y+YTRNLVD GN KFN
Sbjct: 12 LADLIRILHELFAGDEVNVEEVQAVLEAYESNPAEWALYAKFDQYRYTRNLVDQGNGKFN 71
Query: 143 LMILCWGEGHGSSVHDHADAHCFM 166
LMILCWGEGHGSS+HDH D+HCF+
Sbjct: 72 LMILCWGEGHGSSIHDHTDSHCFL 95
Score = 101 bits (251), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 60/83 (72%), Gaps = 8/83 (9%)
Query: 187 YTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDGE 246
YTRNLVD GN KFNLMILCWGEGHGSS+HDH D+HCF+K+L G L ET + WP +
Sbjct: 58 YTRNLVDQGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWP------D 111
Query: 247 EKPLQVIGKS--PLKLNEVCYIN 267
+K ++I KS L+ N+ YIN
Sbjct: 112 KKSNEMIKKSERTLRENQCAYIN 134
>sp|Q5RBQ7|CDO1_PONAB Cysteine dioxygenase type 1 OS=Pongo abelii GN=CDO1 PE=2 SV=1
Length = 200
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 72/84 (85%)
Query: 83 LADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFN 142
LADL+ LH++F+ D VNV+ V+ +M++Y+S+P EW Y+KFD+Y+YTRNLVD GN KFN
Sbjct: 12 LADLIRILHQLFAGDEVNVEEVQAIMEAYESDPTEWAMYAKFDQYRYTRNLVDQGNGKFN 71
Query: 143 LMILCWGEGHGSSVHDHADAHCFM 166
LMILCWGEGHGSS+HDH ++HCF+
Sbjct: 72 LMILCWGEGHGSSIHDHTNSHCFL 95
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 61/83 (73%), Gaps = 8/83 (9%)
Query: 187 YTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDGE 246
YTRNLVD GN KFNLMILCWGEGHGSS+HDH ++HCF+KML G L ET +AWP +
Sbjct: 58 YTRNLVDQGNGKFNLMILCWGEGHGSSIHDHTNSHCFLKMLQGNLKETLFAWP------D 111
Query: 247 EKPLQVIGKSP--LKLNEVCYIN 267
+K +++ KS L+ N+ YIN
Sbjct: 112 KKSNEMVKKSERVLRENQCAYIN 134
>sp|Q16878|CDO1_HUMAN Cysteine dioxygenase type 1 OS=Homo sapiens GN=CDO1 PE=1 SV=2
Length = 200
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 72/84 (85%)
Query: 83 LADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFN 142
LADL+ LH++F+ D VNV+ V+ +M++Y+S+P EW Y+KFD+Y+YTRNLVD GN KFN
Sbjct: 12 LADLIRILHQLFAGDEVNVEEVQAIMEAYESDPTEWAMYAKFDQYRYTRNLVDQGNGKFN 71
Query: 143 LMILCWGEGHGSSVHDHADAHCFM 166
LMILCWGEGHGSS+HDH ++HCF+
Sbjct: 72 LMILCWGEGHGSSIHDHTNSHCFL 95
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 61/83 (73%), Gaps = 8/83 (9%)
Query: 187 YTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDGE 246
YTRNLVD GN KFNLMILCWGEGHGSS+HDH ++HCF+KML G L ET +AWP +
Sbjct: 58 YTRNLVDQGNGKFNLMILCWGEGHGSSIHDHTNSHCFLKMLQGNLKETLFAWP------D 111
Query: 247 EKPLQVIGKSP--LKLNEVCYIN 267
+K +++ KS L+ N+ YIN
Sbjct: 112 KKSNEMVKKSERVLRENQCAYIN 134
>sp|Q20893|CDO1_CAEEL Cysteine dioxygenase 1 OS=Caenorhabditis elegans GN=cdo-1 PE=3 SV=2
Length = 190
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 59/84 (70%)
Query: 83 LADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFN 142
LV ++ IF ++VD V +M SYKSN EWR+++ FD KYTRNLVD GN K+N
Sbjct: 4 FVQLVVQIREIFQQKLIDVDEVMKLMASYKSNANEWRRFAIFDMNKYTRNLVDVGNGKYN 63
Query: 143 LMILCWGEGHGSSVHDHADAHCFM 166
LMILCWG G SSVHDH DAHCF+
Sbjct: 64 LMILCWGPGMASSVHDHTDAHCFV 87
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 187 YTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDGE 246
YTRNLVD GN K+NLMILCWG G SSVHDH DAHCF+K+LDG LTET+YAWP+
Sbjct: 50 YTRNLVDVGNGKYNLMILCWGPGMASSVHDHTDAHCFVKILDGELTETKYAWPRK----R 105
Query: 247 EKPLQVIGKSPLKLNEVCYIN 267
PL + +N V Y+N
Sbjct: 106 HVPLDISENKTYGMNGVSYMN 126
>sp|Q60TI7|CDO_CAEBR Cysteine dioxygenase OS=Caenorhabditis briggsae GN=cdo-1 PE=3 SV=1
Length = 190
Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 59/84 (70%)
Query: 83 LADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFN 142
LV ++ IF V+VD V +M SYKS+ EWR+++ FD KYTRNLVD GN K+N
Sbjct: 4 FVQLVVQIREIFEHKMVDVDEVMKLMGSYKSDINEWRRFAIFDMNKYTRNLVDIGNGKYN 63
Query: 143 LMILCWGEGHGSSVHDHADAHCFM 166
LMILCWG G SSVHDH DAHCF+
Sbjct: 64 LMILCWGPGMASSVHDHTDAHCFV 87
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 57/81 (70%), Gaps = 4/81 (4%)
Query: 187 YTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDGE 246
YTRNLVD GN K+NLMILCWG G SSVHDH DAHCF+K+LDG LTET+Y WP+ +
Sbjct: 50 YTRNLVDIGNGKYNLMILCWGPGMASSVHDHTDAHCFVKILDGELTETKYDWPKK----K 105
Query: 247 EKPLQVIGKSPLKLNEVCYIN 267
PL+ I LN V Y+N
Sbjct: 106 HTPLETIENKTYGLNGVSYMN 126
>sp|Q5RLY7|CDO_AJECG Cysteine dioxygenase OS=Ajellomyces capsulata (strain G186AR / H82
/ ATCC MYA-2454 / RMSCC 2432) GN=CDO1 PE=2 SV=2
Length = 213
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 187 YTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTD--ED 244
YTRNLVD GN K NL+IL W G GS++HDHA+AHC MK+L G L ET Y WP++D +
Sbjct: 72 YTRNLVDEGNGKCNLLILVWSPGKGSAIHDHANAHCVMKVLKGSLRETLYGWPESDKVQK 131
Query: 245 GEEKPLQVIGKSPLKLNEVCYINGK 269
GE PL V K +V Y++ K
Sbjct: 132 GEPSPLTVTRDKVYKEGQVTYMSDK 156
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 63/102 (61%), Gaps = 10/102 (9%)
Query: 73 SIDNLPQLNCLADLVEELHRIF-------SDDHVNVDYVKFVMKSYKSNPMEWRKYSKFD 125
S D P L+ LV++++++ SDD +D ++ +M+ Y SN EW +Y+ D
Sbjct: 10 SPDPTP-LDAFHCLVQDINKVLGPSSGLDSDDVDPMD-IQKLMEDYTSNESEWERYAFGD 67
Query: 126 KYK-YTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFM 166
+ YTRNLVD GN K NL+IL W G GS++HDHA+AHC M
Sbjct: 68 AGRAYTRNLVDEGNGKCNLLILVWSPGKGSAIHDHANAHCVM 109
>sp|Q9U8F1|CDO_SCHJA Cysteine dioxygenase OS=Schistosoma japonicum GN=CDO PE=2 SV=1
Length = 212
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 60/90 (66%)
Query: 77 LPQLNCLADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDA 136
L ++ L DL++ + IF+ +NV+ + ++ ++ + EW+KY F+K YTRNL+D
Sbjct: 15 LKTVSTLNDLIKTIRIIFNQKEINVNEIHKILNDFQCDFTEWQKYIYFNKTHYTRNLIDE 74
Query: 137 GNDKFNLMILCWGEGHGSSVHDHADAHCFM 166
GN ++NL +LCW E G+ +HDH+ AHCF+
Sbjct: 75 GNGRYNLFLLCWSEDQGTRIHDHSGAHCFV 104
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 185 TLYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQ--TD 242
T YTRNL+D GN ++NL +LCW E G+ +HDH+ AHCF+K++ GC+ ET + WP+ T
Sbjct: 65 THYTRNLIDEGNGRYNLFLLCWSEDQGTRIHDHSGAHCFVKLIKGCIKETIFEWPKYFTV 124
Query: 243 EDGE------EKPLQVIGKSPLKLNEVCYINGK 269
E + PL V S ++ +V Y++ K
Sbjct: 125 EKSNYSINQIDLPLTVKSVSEMRPGDVTYMHDK 157
>sp|A9A3L9|RLMN_NITMS Ribosomal RNA large subunit methyltransferase N OS=Nitrosopumilus
maritimus (strain SCM1) GN=rlmN PE=3 SV=1
Length = 351
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 11/45 (24%)
Query: 64 LDSYYKFPRSIDNLPQL--NCLADLVE---------ELHRIFSDD 97
L YYKFP+ I+++PQL + E E+HR+ SDD
Sbjct: 31 LPLYYKFPKDINDIPQLPKKLREEFTEAGYTIGSAKEIHRVVSDD 75
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,708,937
Number of Sequences: 539616
Number of extensions: 4990121
Number of successful extensions: 9941
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9918
Number of HSP's gapped (non-prelim): 26
length of query: 279
length of database: 191,569,459
effective HSP length: 116
effective length of query: 163
effective length of database: 128,974,003
effective search space: 21022762489
effective search space used: 21022762489
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)