Query psy4445
Match_columns 279
No_of_seqs 155 out of 371
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 17:13:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4064|consensus 100.0 6.7E-43 1.4E-47 302.0 6.0 143 71-275 2-144 (196)
2 PF05995 CDO_I: Cysteine dioxy 100.0 3.1E-33 6.8E-38 242.5 9.0 145 69-276 4-148 (175)
3 COG5553 Predicted metal-depend 99.3 4.7E-12 1E-16 111.2 9.6 130 78-267 5-142 (191)
4 KOG4064|consensus 98.9 5.8E-09 1.3E-13 91.4 7.1 147 65-242 12-165 (196)
5 PF05995 CDO_I: Cysteine dioxy 98.8 4.1E-09 8.9E-14 91.8 3.4 144 66-241 17-167 (175)
6 PF07847 DUF1637: Protein of u 96.9 0.0013 2.7E-08 59.5 4.9 46 196-241 41-86 (200)
7 KOG4281|consensus 96.0 0.0074 1.6E-07 55.7 4.0 46 196-241 72-117 (236)
8 COG1917 Uncharacterized conser 91.4 0.99 2.2E-05 36.7 7.3 40 195-234 39-78 (131)
9 PF02041 Auxin_BP: Auxin bindi 91.3 0.48 1E-05 42.0 5.6 40 196-236 41-80 (167)
10 PRK13290 ectC L-ectoine syntha 91.2 1 2.2E-05 37.7 7.3 49 185-234 20-69 (125)
11 TIGR02451 anti_sig_ChrR anti-s 90.8 0.46 1E-05 43.0 5.2 35 198-233 126-160 (215)
12 TIGR03404 bicupin_oxalic bicup 85.9 2.5 5.4E-05 41.4 7.1 63 197-270 243-305 (367)
13 PF12973 Cupin_7: ChrR Cupin-l 85.4 1.5 3.2E-05 33.9 4.3 37 198-235 23-59 (91)
14 smart00835 Cupin_1 Cupin. This 82.3 8.4 0.00018 32.0 7.8 39 197-235 28-66 (146)
15 COG5553 Predicted metal-depend 82.0 1 2.2E-05 40.6 2.3 53 114-178 56-112 (191)
16 PF07883 Cupin_2: Cupin domain 81.6 2.4 5.2E-05 30.0 3.8 51 203-269 2-52 (71)
17 TIGR03404 bicupin_oxalic bicup 79.3 11 0.00023 37.0 8.6 80 179-270 44-126 (367)
18 PF00190 Cupin_1: Cupin; Inte 67.3 18 0.00038 30.0 6.0 64 199-267 34-97 (144)
19 COG2140 Thermophilic glucose-6 59.1 25 0.00055 32.5 5.8 56 205-271 86-143 (209)
20 PRK13290 ectC L-ectoine syntha 58.8 68 0.0015 26.8 8.0 38 129-166 22-60 (125)
21 PF07847 DUF1637: Protein of u 55.7 48 0.001 30.2 7.0 42 138-179 41-85 (200)
22 TIGR03037 anthran_nbaC 3-hydro 55.3 49 0.0011 29.3 6.8 35 200-235 28-63 (159)
23 TIGR02451 anti_sig_ChrR anti-s 54.3 28 0.00061 31.5 5.3 54 106-163 96-149 (215)
24 TIGR01479 GMP_PMI mannose-1-ph 54.3 53 0.0011 33.0 7.7 40 194-233 371-410 (468)
25 KOG4281|consensus 50.8 37 0.00081 31.9 5.5 41 138-178 72-115 (236)
26 PRK11171 hypothetical protein; 46.9 1.1E+02 0.0023 28.6 8.1 48 187-234 47-97 (266)
27 cd01786 STE50_RA Ubiquitin-lik 43.1 13 0.00029 30.6 1.2 25 100-124 37-61 (98)
28 TIGR03214 ura-cupin putative a 37.0 1.2E+02 0.0025 28.2 6.7 58 197-270 56-114 (260)
29 PRK13264 3-hydroxyanthranilate 36.2 1.4E+02 0.003 27.1 6.7 36 201-237 35-71 (177)
30 PRK11171 hypothetical protein; 31.7 1.2E+02 0.0027 28.2 5.9 37 196-233 181-218 (266)
31 COG3822 ABC-type sugar transpo 30.1 92 0.002 29.0 4.7 16 145-160 90-105 (225)
32 COG3822 ABC-type sugar transpo 29.2 95 0.0021 28.9 4.6 38 203-240 90-128 (225)
33 PRK09943 DNA-binding transcrip 28.6 2.1E+02 0.0046 24.6 6.5 57 197-270 105-162 (185)
34 TIGR03214 ura-cupin putative a 27.2 1.1E+02 0.0025 28.3 4.9 55 197-268 177-232 (260)
35 PF07385 DUF1498: Protein of u 24.2 74 0.0016 29.9 3.0 35 206-241 94-130 (225)
36 PF01050 MannoseP_isomer: Mann 24.2 4.7E+02 0.01 22.6 8.0 38 197-234 61-98 (151)
37 PF02311 AraC_binding: AraC-li 23.9 2.2E+02 0.0048 21.5 5.2 52 202-270 5-57 (136)
38 COG0662 {ManC} Mannose-6-phosp 22.2 2.1E+02 0.0045 23.4 5.1 39 196-234 33-71 (127)
39 PRK15460 cpsB mannose-1-phosph 21.7 3.8E+02 0.0081 27.5 7.7 37 195-232 381-418 (478)
40 cd01778 RASSF1_RA Ubiquitin-li 20.2 2E+02 0.0043 23.7 4.4 56 79-151 25-82 (96)
41 PF09313 DUF1971: Domain of un 20.0 2.3E+02 0.0049 22.3 4.6 43 218-269 23-65 (82)
No 1
>KOG4064|consensus
Probab=100.00 E-value=6.7e-43 Score=301.97 Aligned_cols=143 Identities=57% Similarity=0.948 Sum_probs=131.2
Q ss_pred CCCcCCCCCcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCccccccccccCcccceEeeecCCCCceeEEEEeecC
Q psy4445 71 PRSIDNLPQLNCLADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFNLMILCWGE 150 (279)
Q Consensus 71 ~~~~~~~~~~~~L~~lV~~L~~~~~sd~vd~~~v~~ll~~y~sn~~dW~~ya~~d~~rYtRNLV~~~ngk~nL~~LcW~p 150 (279)
+++++-.|...+|.+||.+|+++|+++.||+++|+++|++|.|||.+|++||.||.++||||||+.||||||||+|
T Consensus 2 eq~~~~~p~~~sl~dLv~~lh~~F~~~~vnveeV~~lM~sYkSnp~EWr~yAkFD~y~YTRNLVD~GNGKfNLmIL---- 77 (196)
T KOG4064|consen 2 EQTEVLKPRMISLVDLVVQLHEIFQQKLVNVEEVMKLMASYKSNPNEWRRYAKFDMYKYTRNLVDVGNGKFNLMIL---- 77 (196)
T ss_pred CCccccCchhhhHHHHHHHHHHHHHhcccCHHHHHHHHHHhhcCHHHHHHHHhhhHHHHhhhhhhcCCCeEeEEEE----
Confidence 4566666777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCceeeeecccceeecccCcccccccceeeeeecCCCcceeEEEeecCCCccccccCCCcceeeEeecce
Q psy4445 151 GHGSSVHDHADAHCFMTNETKKSLYTSSLNKVSCTLYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGC 230 (279)
Q Consensus 151 Gq~S~IHdH~~ahC~~~g~~~e~~y~~~~nk~s~t~YTRnlV~~i~~~~elvll~W~pGQ~SpIHDH~gshC~~kVL~G~ 230 (279)
||+||.+|.||||.++||+||+|+|.
T Consensus 78 ------------------------------------------------------CWGeGhgSSvHDHtdsHCF~KmL~G~ 103 (196)
T KOG4064|consen 78 ------------------------------------------------------CWGEGHGSSVHDHTDSHCFVKMLDGE 103 (196)
T ss_pred ------------------------------------------------------EecCCCCccccccccchhHHHHhcCc
Confidence 78888888888888899999999999
Q ss_pred EEEEeecCCCCCCCCCCCcceeecceeecCCCeeEEcCCCCCccC
Q psy4445 231 LTETRYAWPQTDEDGEEKPLQVIGKSPLKLNEVCYINGKNSSCKG 275 (279)
Q Consensus 231 l~E~rY~~p~~~~~g~~~pL~~~~~~~l~~geVtYIsD~iG~~k~ 275 (279)
|+|++|+||+.+ ...+..++++++..++|+||||+||+|.+
T Consensus 104 L~Et~yawPd~k----s~e~v~isE~~~~~N~vaYiND~lGLHRv 144 (196)
T KOG4064|consen 104 LTETKYAWPDRK----SHEPVDISEKTYGMNGVAYINDELGLHRV 144 (196)
T ss_pred chhhcccCCCcc----cCccccccceeeeccceEEecccccceec
Confidence 999999999764 45667788899999999999999999975
No 2
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=100.00 E-value=3.1e-33 Score=242.48 Aligned_cols=145 Identities=34% Similarity=0.663 Sum_probs=121.9
Q ss_pred ccCCCcCCCCCcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCccccccccccCcccceEeeecCCCCceeEEEEee
Q psy4445 69 KFPRSIDNLPQLNCLADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFNLMILCW 148 (279)
Q Consensus 69 ~~~~~~~~~~~~~~L~~lV~~L~~~~~sd~vd~~~v~~ll~~y~sn~~dW~~ya~~d~~rYtRNLV~~~ngk~nL~~LcW 148 (279)
.++.+++..+++.+|.+||++|++.+++++.+++.++.|++.|.+++.+|++|++|++.+|+||||+. +++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~li~~L~~~~~~~~~~v~~i~~l~~~~~~~~~~w~~~~~~d~~~Y~r~ll~~-~~~~e------ 76 (175)
T PF05995_consen 4 SLITPIKISPSPSSLADLIADLRQIFDQEPDDVEEIAALLRSLASDPSDWLKYARFDPDRYTRNLLYR-DERFE------ 76 (175)
T ss_dssp HHHHHHHTT-SSSSHHHHHHHHHHHTSSSSHHHHHHHHHHHHSCSSCHHHGGGC--SSSSSEEEEEEG-GCT-E------
T ss_pred cccccCccccCCcCHHHHHHHHHHhhcccccCHHHHHHHHHHHhcChHHHHHhhcccCCCCeEEEEec-CCCeE------
Confidence 45667788899999999999999999999999999999999999999999999999999999999954 44455
Q ss_pred cCCCCCccccCCCCceeeeecccceeecccCcccccccceeeeeecCCCcceeEEEeecCCCccccccCCCcceeeEeec
Q psy4445 149 GEGHGSSVHDHADAHCFMTNETKKSLYTSSLNKVSCTLYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLD 228 (279)
Q Consensus 149 ~pGq~S~IHdH~~ahC~~~g~~~e~~y~~~~nk~s~t~YTRnlV~~i~~~~elvll~W~pGQ~SpIHDH~gshC~~kVL~ 228 (279)
|++|||.|||.||||||+++||+++||+
T Consensus 77 ----------------------------------------------------l~ll~W~pGq~S~IHDH~~s~g~~~vl~ 104 (175)
T PF05995_consen 77 ----------------------------------------------------LWLLCWPPGQRSPIHDHGGSWGWVKVLS 104 (175)
T ss_dssp ----------------------------------------------------EEEEEE-TT-B--EEE-TTSEEEEEEEE
T ss_pred ----------------------------------------------------EEEEEeCCCCcCCCCCCCCceEEEEEec
Confidence 4555999999999999999999999999
Q ss_pred ceEEEEeecCCCCCCCCCCCcceeecceeecCCCeeEEcCCCCCccCC
Q psy4445 229 GCLTETRYAWPQTDEDGEEKPLQVIGKSPLKLNEVCYINGKNSSCKGG 276 (279)
Q Consensus 229 G~l~E~rY~~p~~~~~g~~~pL~~~~~~~l~~geVtYIsD~iG~~k~~ 276 (279)
|+++|++|.++.++ ..++...+...+.+++++|++|.+|+|+.+
T Consensus 105 G~l~e~~y~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~ 148 (175)
T PF05995_consen 105 GELEETRYRRPDDG----GAPLELVGRERLLPGGVTYIFDPHGIHRVE 148 (175)
T ss_dssp SEEEEEEEEESTSS----S-EEEECEEEEEETTTEEEEBTTTBEEEEE
T ss_pred ceEEEEEeccCCcc----cCcccccCceEecCCCeEEecCCCCeEEec
Confidence 99999999999873 467888888899999999999999999974
No 3
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=99.34 E-value=4.7e-12 Score=111.21 Aligned_cols=130 Identities=17% Similarity=0.212 Sum_probs=97.2
Q ss_pred CCcCcHHHHHHHHHHHhcCCC--CC-HHHHHHHHHHhhcCcccccc--ccccCcccceEeeecCCCCceeEEEEeecCCC
Q psy4445 78 PQLNCLADLVEELHRIFSDDH--VN-VDYVKFVMKSYKSNPMEWRK--YSKFDKYKYTRNLVDAGNDKFNLMILCWGEGH 152 (279)
Q Consensus 78 ~~~~~L~~lV~~L~~~~~sd~--vd-~~~v~~ll~~y~sn~~dW~~--ya~~d~~rYtRNLV~~~ngk~nL~~LcW~pGq 152 (279)
.+...|..|+.+|+.++++-. .. +++++.+|.+|+.+ ..|.+ ++.+||++||..|++.+.
T Consensus 5 l~l~rl~~f~~e~~diln~~~dEst~l~ev~~ll~~l~~~-~~wl~~~~~~pdp~tgt~~LLh~d~-------------- 69 (191)
T COG5553 5 LPLSRLSLFYREIMDILNAAADESTPLEEVKALLGDLTNR-FHWLGGLVHEPDPDTGTELLLHADP-------------- 69 (191)
T ss_pred cchhHHHHHHHHHHHHHhhccCcCcchHHHHHHHHHHhhh-hhhhhhhhcCCCCCccceEEEEEcc--------------
Confidence 344588899999999997532 22 89999999999975 67886 889999999999997643
Q ss_pred CCccccCCCCceeeeecccceeecccCcccccccceeeeeecCCCcceeEEEeecCCCccccccCCCcceeeEeecceEE
Q psy4445 153 GSSVHDHADAHCFMTNETKKSLYTSSLNKVSCTLYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLT 232 (279)
Q Consensus 153 ~S~IHdH~~ahC~~~g~~~e~~y~~~~nk~s~t~YTRnlV~~i~~~~elvll~W~pGQ~SpIHDH~gshC~~kVL~G~l~ 232 (279)
.+.+.|..++|+||+.+|||+|.. |++++||.|..+
T Consensus 70 -------------------------------------------~gfltV~~~t~~PG~~~p~HnH~~-wglVgil~G~E~ 105 (191)
T COG5553 70 -------------------------------------------QGFLTVYHITLSPGVQYPPHNHLM-WGLVGILWGGET 105 (191)
T ss_pred -------------------------------------------cccEEEEEEEeCCCcccCCcccch-heeeeeeecccc
Confidence 233566678999999999999997 999999999999
Q ss_pred EEeecCCCCCCC---CCCCcceeecceeecCCCeeEEc
Q psy4445 233 ETRYAWPQTDED---GEEKPLQVIGKSPLKLNEVCYIN 267 (279)
Q Consensus 233 E~rY~~p~~~~~---g~~~pL~~~~~~~l~~geVtYIs 267 (279)
-+.|.....+.+ +..+ ...-++..|.+|+|--++
T Consensus 106 n~~y~~~~~~~~~P~~qdk-~~apgeV~lSpgdihsv~ 142 (191)
T COG5553 106 NFIYPLAGEEVDEPERQDK-FAAPGEVHLSPGDIHSVA 142 (191)
T ss_pred cceecccCCCCCCcchhhh-hcCcceEeeCCCCeeeec
Confidence 888887654221 1111 222234447777776665
No 4
>KOG4064|consensus
Probab=98.86 E-value=5.8e-09 Score=91.43 Aligned_cols=147 Identities=24% Similarity=0.288 Sum_probs=93.9
Q ss_pred ccccccCCCcCCCCCcCcH-HHHHHHHHHHhcCCCCCHHHHHHH-HHHhhcCccccccccccCcccceEeeecCCCCcee
Q psy4445 65 DSYYKFPRSIDNLPQLNCL-ADLVEELHRIFSDDHVNVDYVKFV-MKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFN 142 (279)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~L-~~lV~~L~~~~~sd~vd~~~v~~l-l~~y~sn~~dW~~ya~~d~~rYtRNLV~~~ngk~n 142 (279)
+|+..|...|.++-+..-. -|.|..|+..++|++..+...... |-.|..|.-| ...-.=||. -
T Consensus 12 ~sl~dLv~~lh~~F~~~~vnveeV~~lM~sYkSnp~EWr~yAkFD~y~YTRNLVD--------~GNGKfNLm-------I 76 (196)
T KOG4064|consen 12 ISLVDLVVQLHEIFQQKLVNVEEVMKLMASYKSNPNEWRRYAKFDMYKYTRNLVD--------VGNGKFNLM-------I 76 (196)
T ss_pred hhHHHHHHHHHHHHHhcccCHHHHHHHHHHhhcCHHHHHHHHhhhHHHHhhhhhh--------cCCCeEeEE-------E
Confidence 3444454444443332222 277888888888887776544433 4556655333 233445665 3
Q ss_pred EEEEeecCCCCCccccCCCCceeee---ecccceeecccCcccccccceeeeeecCCCcceeEEEeecCCCccccccCCC
Q psy4445 143 LMILCWGEGHGSSVHDHADAHCFMT---NETKKSLYTSSLNKVSCTLYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHAD 219 (279)
Q Consensus 143 L~~LcW~pGq~S~IHdH~~ahC~~~---g~~~e~~y~~~~nk~s~t~YTRnlV~~i~~~~elvll~W~pGQ~SpIHDH~g 219 (279)
|-|= ||++|+||||.++||+|| |+++|..|+||.++.. ..|. +.+ -..+..+.+.|-|..|
T Consensus 77 LCWG---eGhgSSvHDHtdsHCF~KmL~G~L~Et~yawPd~ks~------e~v~-isE------~~~~~N~vaYiND~lG 140 (196)
T KOG4064|consen 77 LCWG---EGHGSSVHDHTDSHCFVKMLDGELTETKYAWPDRKSH------EPVD-ISE------KTYGMNGVAYINDELG 140 (196)
T ss_pred EEec---CCCCccccccccchhHHHHhcCcchhhcccCCCcccC------cccc-ccc------eeeeccceEEeccccc
Confidence 5556 999999999999999997 9999999999975321 1111 111 1334556666666666
Q ss_pred cceeeEee--cceEEEEeecCCCCC
Q psy4445 220 AHCFMKML--DGCLTETRYAWPQTD 242 (279)
Q Consensus 220 shC~~kVL--~G~l~E~rY~~p~~~ 242 (279)
.|-+.++- .|++..++|.+|-+.
T Consensus 141 LHRvEN~SHs~~aVSLHLY~PPfdT 165 (196)
T KOG4064|consen 141 LHRVENLSHSNGAVSLHLYIPPFDT 165 (196)
T ss_pred ceeccccccCCCceEEEEecCCcch
Confidence 65554443 579999999999764
No 5
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=98.77 E-value=4.1e-09 Score=91.85 Aligned_cols=144 Identities=15% Similarity=0.220 Sum_probs=75.5
Q ss_pred cccccCCCcCCCCCcCcH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCccccccccccCcccceEeeecCCCCceeEE
Q psy4445 66 SYYKFPRSIDNLPQLNCL-ADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFNLM 144 (279)
Q Consensus 66 ~~~~~~~~~~~~~~~~~L-~~lV~~L~~~~~sd~vd~~~v~~ll~~y~sn~~dW~~ya~~d~~rYtRNLV~~~ngk~nL~ 144 (279)
+|.+|+..|..++..... -+.|++|.+.+..+. ..+.++. .-++....+..-....+|.--|+
T Consensus 17 ~~~~li~~L~~~~~~~~~~v~~i~~l~~~~~~~~---~~w~~~~---~~d~~~Y~r~ll~~~~~~el~ll---------- 80 (175)
T PF05995_consen 17 SLADLIADLRQIFDQEPDDVEEIAALLRSLASDP---SDWLKYA---RFDPDRYTRNLLYRDERFELWLL---------- 80 (175)
T ss_dssp SHHHHHHHHHHHTSSSSHHHHHHHHHHHHSCSSC---HHHGGGC-----SSSSSEEEEEEGGCT-EEEEE----------
T ss_pred CHHHHHHHHHHhhcccccCHHHHHHHHHHHhcCh---HHHHHhh---cccCCCCeEEEEecCCCeEEEEE----------
Confidence 344444455444433222 245555656666543 3333221 11333333333344456765554
Q ss_pred EEeecCCCCCccccCCCCceeee---ecccceeecccCccccc-ccceeeeeecCCCcceeEEEeecCCCccccccCCCc
Q psy4445 145 ILCWGEGHGSSVHDHADAHCFMT---NETKKSLYTSSLNKVSC-TLYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADA 220 (279)
Q Consensus 145 ~LcW~pGq~S~IHdH~~ahC~~~---g~~~e~~y~~~~nk~s~-t~YTRnlV~~i~~~~elvll~W~pGQ~SpIHDH~gs 220 (279)
||.|||.||||||+++||||+ |+++|.+|.++.....+ ....+..+ .+|..+.+.+..+-
T Consensus 81 --~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~--------------~~~g~~~~~~~~~i 144 (175)
T PF05995_consen 81 --CWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERL--------------LPGGVTYIFDPHGI 144 (175)
T ss_dssp --EE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEE--------------ETTTEEEEBTTTBE
T ss_pred --EeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEe--------------cCCCeEEecCCCCe
Confidence 999999999999999999996 99999999988651111 11112211 23445555555555
Q ss_pred ceeeEee--cceEEEEeecCCCC
Q psy4445 221 HCFMKML--DGCLTETRYAWPQT 241 (279)
Q Consensus 221 hC~~kVL--~G~l~E~rY~~p~~ 241 (279)
|-+.+.. +.+++.+.|.+|-.
T Consensus 145 H~v~n~s~~~~avSLHvYspPl~ 167 (175)
T PF05995_consen 145 HRVENPSGDEPAVSLHVYSPPLE 167 (175)
T ss_dssp EEEEES-SSS-EEEEEEEES--S
T ss_pred EEeccCCCCCCEEEEEEcCCChh
Confidence 6554433 56999999998854
No 6
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=96.92 E-value=0.0013 Score=59.53 Aligned_cols=46 Identities=28% Similarity=0.595 Sum_probs=44.1
Q ss_pred CCcceeEEEeecCCCccccccCCCcceeeEeecceEEEEeecCCCC
Q psy4445 196 NDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQT 241 (279)
Q Consensus 196 ~~~~elvll~W~pGQ~SpIHDH~gshC~~kVL~G~l~E~rY~~p~~ 241 (279)
++.|+|-+++-.||..=|.|||++.+.++|||.|++.-..|+|-+.
T Consensus 41 ~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~ 86 (200)
T PF07847_consen 41 DEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDE 86 (200)
T ss_pred CCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEcccccc
Confidence 7899999999999999999999999999999999999999999763
No 7
>KOG4281|consensus
Probab=95.98 E-value=0.0074 Score=55.73 Aligned_cols=46 Identities=26% Similarity=0.559 Sum_probs=43.9
Q ss_pred CCcceeEEEeecCCCccccccCCCcceeeEeecceEEEEeecCCCC
Q psy4445 196 NDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQT 241 (279)
Q Consensus 196 ~~~~elvll~W~pGQ~SpIHDH~gshC~~kVL~G~l~E~rY~~p~~ 241 (279)
.++|+|-++|-.|++.=|.|||++.+.+.|+|=|+|....|+|.+.
T Consensus 72 cD~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksyDw~eP 117 (236)
T KOG4281|consen 72 CDRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSYDWVEP 117 (236)
T ss_pred cCceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeeccccCC
Confidence 6899999999999999999999999999999999999999999743
No 8
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=91.36 E-value=0.99 Score=36.69 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=33.1
Q ss_pred CCCcceeEEEeecCCCccccccCCCcceeeEeecceEEEE
Q psy4445 195 GNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTET 234 (279)
Q Consensus 195 i~~~~elvll~W~pGQ~SpIHDH~gshC~~kVL~G~l~E~ 234 (279)
....+.++.++..||+.++.|.|+..-=.+.||+|+++-+
T Consensus 39 ~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~ 78 (131)
T COG1917 39 EGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQ 78 (131)
T ss_pred CCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEE
Confidence 3677888999999999999999993235788999987754
No 9
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=91.27 E-value=0.48 Score=42.05 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=26.5
Q ss_pred CCcceeEEEeecCCCccccccCCCcceeeEeecceEEEEee
Q psy4445 196 NDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRY 236 (279)
Q Consensus 196 ~~~~elvll~W~pGQ~SpIHDH~gshC~~kVL~G~l~E~rY 236 (279)
-..+||++=...||+.||||.|.. .=++-||+|+=+.-.+
T Consensus 41 mkevEVwlQTfAPG~~TPiHRHsC-EEVFvVLkG~GTl~l~ 80 (167)
T PF02041_consen 41 MKEVEVWLQTFAPGSATPIHRHSC-EEVFVVLKGSGTLYLA 80 (167)
T ss_dssp -SSEEEEEEEE-TT-B--EEEESS--EEEEEEE--EEEEE-
T ss_pred ceeeeEEeeeecCCCCCCCccccc-cEEEEEEecceEEEEe
Confidence 456899999999999999999998 5567799997766665
No 10
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=91.19 E-value=1 Score=37.67 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=39.0
Q ss_pred ccceeeeee-cCCCcceeEEEeecCCCccccccCCCcceeeEeecceEEEE
Q psy4445 185 TLYTRNLVD-AGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTET 234 (279)
Q Consensus 185 t~YTRnlV~-~i~~~~elvll~W~pGQ~SpIHDH~gshC~~kVL~G~l~E~ 234 (279)
..-+|.++. .++..|+++.++-.||+.++.|-|.... ++.||+|+++-+
T Consensus 20 ~~~~krll~~~~~~~~~~~~~~l~pG~~~~~h~h~~~E-~~yVL~G~~~~~ 69 (125)
T PRK13290 20 NWTSRRLLLKDDGMGFSFHETTIYAGTETHLHYKNHLE-AVYCIEGEGEVE 69 (125)
T ss_pred CceEEEEEEecCCCCEEEEEEEECCCCcccceeCCCEE-EEEEEeCEEEEE
Confidence 345666764 5567889998999999999999987654 889999988764
No 11
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=90.76 E-value=0.46 Score=43.00 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=30.7
Q ss_pred cceeEEEeecCCCccccccCCCcceeeEeecceEEE
Q psy4445 198 KFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTE 233 (279)
Q Consensus 198 ~~elvll~W~pGQ~SpIHDH~gshC~~kVL~G~l~E 233 (279)
.-.+-++.|.||+.-|.|.|.|.. +.-||+|++..
T Consensus 126 ~~~v~Ll~i~pG~~~p~H~H~G~E-~tlVLeG~f~d 160 (215)
T TIGR02451 126 NARVRLLYIEAGQSIPQHTHKGFE-LTLVLHGAFSD 160 (215)
T ss_pred CcEEEEEEECCCCccCCCcCCCcE-EEEEEEEEEEc
Confidence 456779999999999999999988 77999999753
No 12
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=85.94 E-value=2.5 Score=41.37 Aligned_cols=63 Identities=16% Similarity=0.164 Sum_probs=49.1
Q ss_pred CcceeEEEeecCCCccccccCCCcceeeEeecceEEEEeecCCCCCCCCCCCcceeecceeecCCCeeEEcCCC
Q psy4445 197 DKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDGEEKPLQVIGKSPLKLNEVCYINGKN 270 (279)
Q Consensus 197 ~~~elvll~W~pGQ~SpIHDH~gshC~~kVL~G~l~E~rY~~p~~~~~g~~~pL~~~~~~~l~~geVtYIsD~i 270 (279)
..+++..+.=.||..++.|-|.+++=|+.||+|+.+-+.+...... ....+.+|++.||-...
T Consensus 243 ~~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~-----------~~~~l~~GD~~~iP~g~ 305 (367)
T TIGR03404 243 KTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNA-----------RTFDYQAGDVGYVPRNM 305 (367)
T ss_pred ceEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcE-----------EEEEECCCCEEEECCCC
Confidence 3577788888999999999999999999999999887766543221 23458888888886643
No 13
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=85.35 E-value=1.5 Score=33.90 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=30.3
Q ss_pred cceeEEEeecCCCccccccCCCcceeeEeecceEEEEe
Q psy4445 198 KFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETR 235 (279)
Q Consensus 198 ~~elvll~W~pGQ~SpIHDH~gshC~~kVL~G~l~E~r 235 (279)
...+.++-|.||...|.|.|.+ .=.+-||+|++....
T Consensus 23 g~~~~L~r~~pG~~~p~H~H~g-~ee~~VLeG~~~d~~ 59 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRHPG-GEEILVLEGELSDGD 59 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEESS--EEEEEEECEEEETT
T ss_pred cCEEEEEEECCCCCcCccCCCC-cEEEEEEEEEEEECC
Confidence 5688899999999999999998 566789999988643
No 14
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=82.25 E-value=8.4 Score=32.04 Aligned_cols=39 Identities=13% Similarity=-0.025 Sum_probs=33.6
Q ss_pred CcceeEEEeecCCCccccccCCCcceeeEeecceEEEEe
Q psy4445 197 DKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETR 235 (279)
Q Consensus 197 ~~~elvll~W~pGQ~SpIHDH~gshC~~kVL~G~l~E~r 235 (279)
..+.+..+.=.||+.++.|-|.++.-++.|++|+++-..
T Consensus 28 ~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~ 66 (146)
T smart00835 28 LGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGV 66 (146)
T ss_pred CceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEE
Confidence 467788888899999999999877899999999987753
No 15
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=82.02 E-value=1 Score=40.57 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=34.9
Q ss_pred Ccccccccc-ccCcccceEeeecCCCCceeEEEEeecCCCCCccccCCCCceee---eecccceeeccc
Q psy4445 114 NPMEWRKYS-KFDKYKYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFM---TNETKKSLYTSS 178 (279)
Q Consensus 114 n~~dW~~ya-~~d~~rYtRNLV~~~ngk~nL~~LcW~pGq~S~IHdH~~ahC~~---~g~~~e~~y~~~ 178 (279)
++..-+.|. +.|+..+ +.+..++|.||+.+|||||.. |..+ +|+=+-++|...
T Consensus 56 dp~tgt~~LLh~d~~gf-----------ltV~~~t~~PG~~~p~HnH~~-wglVgil~G~E~n~~y~~~ 112 (191)
T COG5553 56 DPDTGTELLLHADPQGF-----------LTVYHITLSPGVQYPPHNHLM-WGLVGILWGGETNFIYPLA 112 (191)
T ss_pred CCCccceEEEEEccccc-----------EEEEEEEeCCCcccCCcccch-heeeeeeecccccceeccc
Confidence 344344444 7777531 345678999999999999985 4333 477666777543
No 16
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=81.65 E-value=2.4 Score=30.01 Aligned_cols=51 Identities=24% Similarity=0.265 Sum_probs=38.2
Q ss_pred EEeecCCCccccccCCCcceeeEeecceEEEEeecCCCCCCCCCCCcceeecceeecCCCeeEEcCC
Q psy4445 203 ILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDGEEKPLQVIGKSPLKLNEVCYINGK 269 (279)
Q Consensus 203 ll~W~pGQ~SpIHDH~gshC~~kVL~G~l~E~rY~~p~~~~~g~~~pL~~~~~~~l~~geVtYIsD~ 269 (279)
++...||...|-|.|....=++.||+|+++-. .. + ....+++|++.||...
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~---~------------~~~~l~~Gd~~~i~~~ 52 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VD---G------------ERVELKPGDAIYIPPG 52 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEE-ET---T------------EEEEEETTEEEEEETT
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ec---c------------EEeEccCCEEEEECCC
Confidence 45678999999999999757889999998765 22 1 1356777887777654
No 17
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=79.33 E-value=11 Score=37.01 Aligned_cols=80 Identities=13% Similarity=0.053 Sum_probs=54.9
Q ss_pred Ccccccccceeeeeec---CCCcceeEEEeecCCCccccccCCCcceeeEeecceEEEEeecCCCCCCCCCCCcceeecc
Q psy4445 179 LNKVSCTLYTRNLVDA---GNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDGEEKPLQVIGK 255 (279)
Q Consensus 179 ~nk~s~t~YTRnlV~~---i~~~~elvll~W~pGQ~SpIHDH~gshC~~kVL~G~l~E~rY~~p~~~~~g~~~pL~~~~~ 255 (279)
.+.....++.|..... +....+++.+.-.||...+.|-|.++. |+.|++|++.-+..... + + ...
T Consensus 44 ~~~~~~gG~~~~~~~~~lP~l~~ls~~~~~l~pG~~~~~HwH~~~E-~~yVl~G~~~v~~~d~~-g------~----~~~ 111 (367)
T TIGR03404 44 HNRLENGGWAREVTVRDLPISTAIAGVNMRLEPGAIRELHWHKEAE-WAYVLYGSCRITAVDEN-G------R----NYI 111 (367)
T ss_pred cCccccCceEEEeChhhccCcccccceEEEEcCCCCCCcccCCCce-EEEEEeeEEEEEEEcCC-C------c----EEE
Confidence 3455556666666542 234578888899999999999999887 99999999987665421 1 1 111
Q ss_pred eeecCCCeeEEcCCC
Q psy4445 256 SPLKLNEVCYINGKN 270 (279)
Q Consensus 256 ~~l~~geVtYIsD~i 270 (279)
..+.+|++-|+.-.+
T Consensus 112 ~~L~~GD~~~fP~g~ 126 (367)
T TIGR03404 112 DDVGAGDLWYFPPGI 126 (367)
T ss_pred eEECCCCEEEECCCC
Confidence 257788888876543
No 18
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=67.28 E-value=18 Score=30.01 Aligned_cols=64 Identities=16% Similarity=0.021 Sum_probs=41.2
Q ss_pred ceeEEEeecCCCccccccCCCcceeeEeecceEEEEeecCCCCCCCCCCCcceeecceeecCCCeeEEc
Q psy4445 199 FNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDGEEKPLQVIGKSPLKLNEVCYIN 267 (279)
Q Consensus 199 ~elvll~W~pGQ~SpIHDH~gshC~~kVL~G~l~E~rY~~p~~~~~g~~~pL~~~~~~~l~~geVtYIs 267 (279)
+.+.++.=.||...+.|-| .++.++.|++|+.+.......... +......... .+++|+|-+|-
T Consensus 34 ~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~---~~~~~~~~~v-~l~~Gdv~~vP 97 (144)
T PF00190_consen 34 VAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQ---EEFRDFSQKV-RLKAGDVFVVP 97 (144)
T ss_dssp EEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSS---SEEEEEEEEE-EEETTEEEEE-
T ss_pred eEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCcc---ccceeeecee-eeecccceeec
Confidence 3444555589999999999 999999999999987666543210 0001111111 47777777653
No 19
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=59.05 E-value=25 Score=32.52 Aligned_cols=56 Identities=14% Similarity=0.066 Sum_probs=44.7
Q ss_pred eecCCCccccccCCCcce--eeEeecceEEEEeecCCCCCCCCCCCcceeecceeecCCCeeEEcCCCC
Q psy4445 205 CWGEGHGSSVHDHADAHC--FMKMLDGCLTETRYAWPQTDEDGEEKPLQVIGKSPLKLNEVCYINGKNS 271 (279)
Q Consensus 205 ~W~pGQ~SpIHDH~gshC--~~kVL~G~l~E~rY~~p~~~~~g~~~pL~~~~~~~l~~geVtYIsD~iG 271 (279)
.=.||+.+..|-|+++.- |..||+|+-.-..+... . . ..+-.+++|+|.||-...|
T Consensus 86 ~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~-G------~----~~v~~~~~Gd~iyVPp~~g 143 (209)
T COG2140 86 FKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPE-G------E----ARVIAVRAGDVIYVPPGYG 143 (209)
T ss_pred EecCCcccccccCCCCCcccEEEEEeccEEEEEEcCC-C------c----EEEEEecCCcEEEeCCCcc
Confidence 347999999999999999 99999998877777754 2 1 2344578899999988766
No 20
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=58.82 E-value=68 Score=26.78 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=27.3
Q ss_pred ceEeeecC-CCCceeEEEEeecCCCCCccccCCCCceee
Q psy4445 129 YTRNLVDA-GNDKFNLMILCWGEGHGSSVHDHADAHCFM 166 (279)
Q Consensus 129 YtRNLV~~-~ngk~nL~~LcW~pGq~S~IHdH~~ahC~~ 166 (279)
=+|.|+.. ++..|.++..+-.||+..+.|-|+....++
T Consensus 22 ~~krll~~~~~~~~~~~~~~l~pG~~~~~h~h~~~E~~y 60 (125)
T PRK13290 22 TSRRLLLKDDGMGFSFHETTIYAGTETHLHYKNHLEAVY 60 (125)
T ss_pred eEEEEEEecCCCCEEEEEEEECCCCcccceeCCCEEEEE
Confidence 45666643 456677777889999999999987555444
No 21
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=55.66 E-value=48 Score=30.20 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=37.2
Q ss_pred CCceeEEEEeecCCCCCccccCCCCceeee---ecccceeecccC
Q psy4445 138 NDKFNLMILCWGEGHGSSVHDHADAHCFMT---NETKKSLYTSSL 179 (279)
Q Consensus 138 ngk~nL~~LcW~pGq~S~IHdH~~ahC~~~---g~~~e~~y~~~~ 179 (279)
+..|.+-+.|-.||..=|.|||.+-+-++| |.+.=.-|+|-.
T Consensus 41 ~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~ 85 (200)
T PF07847_consen 41 DEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVD 85 (200)
T ss_pred CCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccc
Confidence 568999999999999999999999999887 888888887764
No 22
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=55.31 E-value=49 Score=29.32 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=29.1
Q ss_pred eeEEEee-cCCCccccccCCCcceeeEeecceEEEEe
Q psy4445 200 NLMILCW-GEGHGSSVHDHADAHCFMKMLDGCLTETR 235 (279)
Q Consensus 200 elvll~W-~pGQ~SpIHDH~gshC~~kVL~G~l~E~r 235 (279)
++.++.+ +||+++.-|.|. +-=|..+|+|++....
T Consensus 28 ~~~v~~vgGpn~R~d~H~~~-tdE~FyqleG~~~l~v 63 (159)
T TIGR03037 28 EFMVTVVGGPNARTDFHDDP-GEEFFYQLKGEMYLKV 63 (159)
T ss_pred cEEEEEeCCCCCCcccccCC-CceEEEEEcceEEEEE
Confidence 5666677 999999999998 4889999999987753
No 23
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=54.31 E-value=28 Score=31.50 Aligned_cols=54 Identities=19% Similarity=0.360 Sum_probs=35.4
Q ss_pred HHHHHhhcCccccccccccCcccceEeeecCCCCceeEEEEeecCCCCCccccCCCCc
Q psy4445 106 FVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAH 163 (279)
Q Consensus 106 ~ll~~y~sn~~dW~~ya~~d~~rYtRNLV~~~ngk~nL~~LcW~pGq~S~IHdH~~ah 163 (279)
..|++|......|+... + .-.+-.+..++++-.+-++.|.||+.-|.|.|.|..
T Consensus 96 ~~l~~~~~~~~~W~~~~---~-gv~~~~L~~~~~~~~v~Ll~i~pG~~~p~H~H~G~E 149 (215)
T TIGR02451 96 EVLRDYVGGPWRWRGPG---G-RVSRVTLPIDDGNARVRLLYIEAGQSIPQHTHKGFE 149 (215)
T ss_pred HHHHHhhcCCCCccCCC---C-CeEEEeccCCCCCcEEEEEEECCCCccCCCcCCCcE
Confidence 44555544224687644 1 223445554343457789999999999999999987
No 24
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=54.29 E-value=53 Score=32.99 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=30.7
Q ss_pred cCCCcceeEEEeecCCCccccccCCCcceeeEeecceEEE
Q psy4445 194 AGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTE 233 (279)
Q Consensus 194 ~i~~~~elvll~W~pGQ~SpIHDH~gshC~~kVL~G~l~E 233 (279)
...+++.+..+.-.||+..+.|-|....=.+.||+|+++-
T Consensus 371 ~~~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v 410 (468)
T TIGR01479 371 DQGDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARV 410 (468)
T ss_pred ecCCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEE
Confidence 3478999999999999988876665444444799998874
No 25
>KOG4281|consensus
Probab=50.80 E-value=37 Score=31.91 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=36.9
Q ss_pred CCceeEEEEeecCCCCCccccCCCCceeee---ecccceeeccc
Q psy4445 138 NDKFNLMILCWGEGHGSSVHDHADAHCFMT---NETKKSLYTSS 178 (279)
Q Consensus 138 ngk~nL~~LcW~pGq~S~IHdH~~ahC~~~---g~~~e~~y~~~ 178 (279)
-++|.+=+.|-.|+..=|.|||.+-+-..| |+|.=.-|+|.
T Consensus 72 cD~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksyDw~ 115 (236)
T KOG4281|consen 72 CDRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSYDWV 115 (236)
T ss_pred cCceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeecccc
Confidence 468999999999999999999999777777 89988889887
No 26
>PRK11171 hypothetical protein; Provisional
Probab=46.93 E-value=1.1e+02 Score=28.55 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=34.4
Q ss_pred ceeeeee--cCCCcceeEEEeecCCCccccccCC-CcceeeEeecceEEEE
Q psy4445 187 YTRNLVD--AGNDKFNLMILCWGEGHGSSVHDHA-DAHCFMKMLDGCLTET 234 (279)
Q Consensus 187 YTRnlV~--~i~~~~elvll~W~pGQ~SpIHDH~-gshC~~kVL~G~l~E~ 234 (279)
+.+..+. .....++++++.-.||+.+..|-|. +..=++.||+|+++-+
T Consensus 47 ~~~~~L~~~~~~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~ 97 (266)
T PRK11171 47 TRAWVLARPGLGATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLT 97 (266)
T ss_pred eEEEEEeCCCCCCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEE
Confidence 4444443 2367899999999999887776654 4455677999998764
No 27
>cd01786 STE50_RA Ubiquitin-like domain of STE50_RA. STE50_RA The fungal adaptor protein STE50 is an essential component of three MAPK-mediated signalling pathways, which control the mating response, invasive/filamentous growth and osmotolerance (HOG pathway), respectively. STE50 functions in cell signalling between the activated G protein and STE11. The domain architecture of STE50 includes an amino-terminal SAM (sterile alpha motif) domain in addition to the carboxy-terminal ubiquitin-like RA (RAS-associated) domain. While the SAM domain interacts with STE11, the RA domain interacts with CDC42 and RAS. Modulation of signal transduction by STE50 specifically affects the pheromone-response pathway in yeast.
Probab=43.06 E-value=13 Score=30.61 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHhhcCcccccccccc
Q psy4445 100 NVDYVKFVMKSYKSNPMEWRKYSKF 124 (279)
Q Consensus 100 d~~~v~~ll~~y~sn~~dW~~ya~~ 124 (279)
=..-+...|+.|..|.+||+.|+.+
T Consensus 37 C~kVL~~Alkry~I~~~dW~~Y~L~ 61 (98)
T cd01786 37 CEKILKNAMKRHNLNDQDWRQYVLV 61 (98)
T ss_pred HHHHHHHHHHHcCCChhhhhheEEE
Confidence 3678899999999999999999976
No 28
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=36.99 E-value=1.2e+02 Score=28.25 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=40.6
Q ss_pred CcceeEEEeecCCCcccc-ccCCCcceeeEeecceEEEEeecCCCCCCCCCCCcceeecceeecCCCeeEEcCCC
Q psy4445 197 DKFNLMILCWGEGHGSSV-HDHADAHCFMKMLDGCLTETRYAWPQTDEDGEEKPLQVIGKSPLKLNEVCYINGKN 270 (279)
Q Consensus 197 ~~~elvll~W~pGQ~SpI-HDH~gshC~~kVL~G~l~E~rY~~p~~~~~g~~~pL~~~~~~~l~~geVtYIsD~i 270 (279)
..|++.++.-.||..++- |.|.+..-++.||+|+++-+. . + ....|.+|+..|+....
T Consensus 56 ~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~-~---g------------~~~~L~~Gd~~y~pa~~ 114 (260)
T TIGR03214 56 ATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTA-E---G------------ETHELREGGYAYLPPGS 114 (260)
T ss_pred CcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEE-C---C------------EEEEECCCCEEEECCCC
Confidence 689999999999887654 446776789999999987641 1 1 12356677777776544
No 29
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=36.18 E-value=1.4e+02 Score=27.07 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=28.6
Q ss_pred eEEEee-cCCCccccccCCCcceeeEeecceEEEEeec
Q psy4445 201 LMILCW-GEGHGSSVHDHADAHCFMKMLDGCLTETRYA 237 (279)
Q Consensus 201 lvll~W-~pGQ~SpIHDH~gshC~~kVL~G~l~E~rY~ 237 (279)
..+++. +||+.+.-|.|.+ -=|..+|+|.++...-+
T Consensus 35 ~~VmvvgGpn~r~d~H~~~t-dE~FyqleG~~~l~v~d 71 (177)
T PRK13264 35 FIVMVVGGPNARTDFHYDPG-EEFFYQLEGDMYLKVQE 71 (177)
T ss_pred EEEEEEccCCcccccccCCC-ceEEEEECCeEEEEEEc
Confidence 344456 9999999999987 77899999998765543
No 30
>PRK11171 hypothetical protein; Provisional
Probab=31.67 E-value=1.2e+02 Score=28.15 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=28.6
Q ss_pred CCcceeEEEeecCCCccccc-cCCCcceeeEeecceEEE
Q psy4445 196 NDKFNLMILCWGEGHGSSVH-DHADAHCFMKMLDGCLTE 233 (279)
Q Consensus 196 ~~~~elvll~W~pGQ~SpIH-DH~gshC~~kVL~G~l~E 233 (279)
...++++.+.-.||...+.| -|... =.+-||+|+++.
T Consensus 181 ~~~~~~~~~~l~PG~~~~~~~~~~~e-e~i~Vl~G~~~~ 218 (266)
T PRK11171 181 RFDMHVNIVTFEPGASIPFVETHVME-HGLYVLEGKGVY 218 (266)
T ss_pred CCCcEEEEEEECCCCEEccCcCCCce-EEEEEEeCEEEE
Confidence 34469999999999999995 45554 456799998875
No 31
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=30.11 E-value=92 Score=29.02 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=13.2
Q ss_pred EEeecCCCCCccccCC
Q psy4445 145 ILCWGEGHGSSVHDHA 160 (279)
Q Consensus 145 ~LcW~pGq~S~IHdH~ 160 (279)
+|.=+|||.||+|-|.
T Consensus 90 iM~vr~gQvtPmHrH~ 105 (225)
T COG3822 90 IMHVRPGQVTPMHRHW 105 (225)
T ss_pred eEEeccCCcCcccccc
Confidence 3444899999999997
No 32
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=29.24 E-value=95 Score=28.93 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=25.1
Q ss_pred EEeecCCCccccccCCC-cceeeEeecceEEEEeecCCC
Q psy4445 203 ILCWGEGHGSSVHDHAD-AHCFMKMLDGCLTETRYAWPQ 240 (279)
Q Consensus 203 ll~W~pGQ~SpIHDH~g-shC~~kVL~G~l~E~rY~~p~ 240 (279)
+|.=.|||.||.|.|.- ..-++.==.|.|..+.|....
T Consensus 90 iM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~ 128 (225)
T COG3822 90 IMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDL 128 (225)
T ss_pred eEEeccCCcCcccccccchhhhhhcCCceEEEEEecccc
Confidence 34458999999999981 112222225688888888763
No 33
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=28.60 E-value=2.1e+02 Score=24.58 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=38.4
Q ss_pred CcceeEEEeecCCCccc-cccCCCcceeeEeecceEEEEeecCCCCCCCCCCCcceeecceeecCCCeeEEcCCC
Q psy4445 197 DKFNLMILCWGEGHGSS-VHDHADAHCFMKMLDGCLTETRYAWPQTDEDGEEKPLQVIGKSPLKLNEVCYINGKN 270 (279)
Q Consensus 197 ~~~elvll~W~pGQ~Sp-IHDH~gshC~~kVL~G~l~E~rY~~p~~~~~g~~~pL~~~~~~~l~~geVtYIsD~i 270 (279)
..+++++..-.||+.++ -|-|.+ .=++.||+|+++-+. . + ....+.+|+..|++...
T Consensus 105 ~~~~~~~~~~~pg~~~~~~~~h~~-~E~~~Vl~G~~~~~~---~-~------------~~~~l~~Gd~~~~~~~~ 162 (185)
T PRK09943 105 RTLAMIFETYQPGTTTGERIKHQG-EEIGTVLEGEIVLTI---N-G------------QDYHLVAGQSYAINTGI 162 (185)
T ss_pred CeeEEEEEEccCCCCcccccccCC-cEEEEEEEeEEEEEE---C-C------------EEEEecCCCEEEEcCCC
Confidence 45666666778999754 566776 566789999988543 1 1 13457788888887653
No 34
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=27.19 E-value=1.1e+02 Score=28.31 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=37.1
Q ss_pred CcceeEEEeecCCCcccc-ccCCCcceeeEeecceEEEEeecCCCCCCCCCCCcceeecceeecCCCeeEEcC
Q psy4445 197 DKFNLMILCWGEGHGSSV-HDHADAHCFMKMLDGCLTETRYAWPQTDEDGEEKPLQVIGKSPLKLNEVCYING 268 (279)
Q Consensus 197 ~~~elvll~W~pGQ~SpI-HDH~gshC~~kVL~G~l~E~rY~~p~~~~~g~~~pL~~~~~~~l~~geVtYIsD 268 (279)
..+.+-++.-.||..+|. |-|...|-. .||+|+-.-.. .. ....+.+|++.||-.
T Consensus 177 ~~~~~~~~~~~PG~~~~~~~~H~~eh~~-yiL~G~G~~~~---~g-------------~~~~V~~GD~i~i~~ 232 (260)
T TIGR03214 177 FDMNVHILSFEPGASHPYIETHVMEHGL-YVLEGKGVYNL---DN-------------NWVPVEAGDYIWMGA 232 (260)
T ss_pred CCcEEEEEEECCCcccCCcccccceeEE-EEEeceEEEEE---CC-------------EEEEecCCCEEEECC
Confidence 367777899999999995 666655665 79999754321 11 134566777777754
No 35
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=24.20 E-value=74 Score=29.86 Aligned_cols=35 Identities=20% Similarity=0.092 Sum_probs=20.1
Q ss_pred ecCCCccccccCCCcceeeEeec--ceEEEEeecCCCC
Q psy4445 206 WGEGHGSSVHDHADAHCFMKMLD--GCLTETRYAWPQT 241 (279)
Q Consensus 206 W~pGQ~SpIHDH~gshC~~kVL~--G~l~E~rY~~p~~ 241 (279)
=.+||.||.|-|.. ---=-+=+ |.|..+.|...++
T Consensus 94 ~~~~Q~tP~H~H~~-K~EDIINRGGG~L~i~l~~s~~~ 130 (225)
T PF07385_consen 94 VREGQVTPMHFHWK-KMEDIINRGGGNLVIELYNSDPD 130 (225)
T ss_dssp E-BT-EEEEEEESS---EEEEEEEES-EEEEEEEB--T
T ss_pred ccCCCcCCcccCcc-hhhheeecCCceEEEEEEeccCC
Confidence 38999999999975 22111333 5898999987654
No 36
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=24.16 E-value=4.7e+02 Score=22.60 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=20.4
Q ss_pred CcceeEEEeecCCCccccccCCCcceeeEeecceEEEE
Q psy4445 197 DKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTET 234 (279)
Q Consensus 197 ~~~elvll~W~pGQ~SpIHDH~gshC~~kVL~G~l~E~ 234 (279)
+.|.+-.|.=.||+..+.|-|.--.=...|++|+..-+
T Consensus 61 ~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~ 98 (151)
T PF01050_consen 61 EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVT 98 (151)
T ss_pred CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEE
Confidence 34444445556666666666653333334677755443
No 37
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=23.87 E-value=2.2e+02 Score=21.45 Aligned_cols=52 Identities=17% Similarity=0.010 Sum_probs=29.7
Q ss_pred EEEeec-CCCccccccCCCcceeeEeecceEEEEeecCCCCCCCCCCCcceeecceeecCCCeeEEcCCC
Q psy4445 202 MILCWG-EGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDGEEKPLQVIGKSPLKLNEVCYINGKN 270 (279)
Q Consensus 202 vll~W~-pGQ~SpIHDH~gshC~~kVL~G~l~E~rY~~p~~~~~g~~~pL~~~~~~~l~~geVtYIsD~i 270 (279)
...-|. ++...+.|.|.. .-++-|++|+.+-. .. .+.-.+++|++-.|++..
T Consensus 5 ~~~~~~~~~~~~~~h~h~~-~~i~~v~~G~~~~~---~~-------------~~~~~l~~g~~~li~p~~ 57 (136)
T PF02311_consen 5 YGISQRSPNFEFPPHWHDF-YEIIYVLSGEGTLH---ID-------------GQEYPLKPGDLFLIPPGQ 57 (136)
T ss_dssp EEEETTSTT-SEEEETT-S-EEEEEEEEE-EEEE---ET-------------TEEEEE-TT-EEEE-TTS
T ss_pred EEEEecCCCCccCCEECCC-EEEEEEeCCEEEEE---EC-------------CEEEEEECCEEEEecCCc
Confidence 344566 677788899995 88999999986641 11 123456666666666543
No 38
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=22.20 E-value=2.1e+02 Score=23.40 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=28.3
Q ss_pred CCcceeEEEeecCCCccccccCCCcceeeEeecceEEEE
Q psy4445 196 NDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTET 234 (279)
Q Consensus 196 ~~~~elvll~W~pGQ~SpIHDH~gshC~~kVL~G~l~E~ 234 (279)
.+.|++..+.=.||...+.|-|...-=..-||+|+.+-+
T Consensus 33 ~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~ 71 (127)
T COG0662 33 GDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVT 71 (127)
T ss_pred CCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEE
Confidence 467788777778888866665555556778999987653
No 39
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=21.68 E-value=3.8e+02 Score=27.50 Aligned_cols=37 Identities=22% Similarity=0.408 Sum_probs=27.5
Q ss_pred CCCcceeEEEeecCCCccccccCC-CcceeeEeecceEE
Q psy4445 195 GNDKFNLMILCWGEGHGSSVHDHA-DAHCFMKMLDGCLT 232 (279)
Q Consensus 195 i~~~~elvll~W~pGQ~SpIHDH~-gshC~~kVL~G~l~ 232 (279)
...+|++..+.=.||+.++.|-|. ++.+|+ |++|+++
T Consensus 381 ~g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~-VlsG~~~ 418 (478)
T PRK15460 381 AGDRYQVKRITVKPGEGLSVQMHHHRAEHWV-VVAGTAK 418 (478)
T ss_pred CCCcEEEEEEEECCCCcCCcCCCCCCceEEE-EEeeEEE
Confidence 367899999999999977555442 336666 9999877
No 40
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=20.19 E-value=2e+02 Score=23.72 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=33.9
Q ss_pred CcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCccccccc--cccCcccceEeeecCCCCceeEEEEeecCC
Q psy4445 79 QLNCLADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKY--SKFDKYKYTRNLVDAGNDKFNLMILCWGEG 151 (279)
Q Consensus 79 ~~~~L~~lV~~L~~~~~sd~vd~~~v~~ll~~y~sn~~dW~~y--a~~d~~rYtRNLV~~~ngk~nL~~LcW~pG 151 (279)
+.++-.+.|+.|-+.|.= ..||.+.+=| .+-..++|.|.|-+ ++..=++.|.|.|.
T Consensus 25 S~tTt~eVI~~LL~KF~v---------------~~nP~kFALYe~~h~~ge~~~rkL~d--~E~PL~~rL~~gp~ 82 (96)
T cd01778 25 SKTTVREVIEALLKKFLV---------------VDNPRKFALFEREHRTGQVYLRKLSD--DECPLYLRLLAGPS 82 (96)
T ss_pred cCCcHHHHHHHHHHhhee---------------ccCCcceEEEEEEecCCcEEEEECCC--CCCCeEeeEeeCCC
Confidence 344555666666555540 1344444444 13345568899885 57788889999884
No 41
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=20.04 E-value=2.3e+02 Score=22.32 Aligned_cols=43 Identities=12% Similarity=0.004 Sum_probs=27.0
Q ss_pred CCcceeeEeecceEEEEeecCCCCCCCCCCCcceeecceeecCCCeeEEcCC
Q psy4445 218 ADAHCFMKMLDGCLTETRYAWPQTDEDGEEKPLQVIGKSPLKLNEVCYINGK 269 (279)
Q Consensus 218 ~gshC~~kVL~G~l~E~rY~~p~~~~~g~~~pL~~~~~~~l~~geVtYIsD~ 269 (279)
.|.|..+.||+|+|+=..+....+ .+.....+.+|+...|.+.
T Consensus 23 ~GtWg~l~Vl~G~L~f~~~~~~~~---------~~~~~~~~~~~~~~~i~Pq 65 (82)
T PF09313_consen 23 AGTWGKLRVLEGELKFYGLDEEGE---------EPEEEVFIPAGQPPVIEPQ 65 (82)
T ss_dssp TTEEEEEEEEESEEEEEEESSTT----------SESEEEEEETTEEEEE-TT
T ss_pred CCeEEEEEEEeeEEEEEEECCCCC---------ceeEEEEeCCCCCceeCCC
Confidence 467999999999998766654221 2233445566766666554
Done!