RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4445
(279 letters)
>gnl|CDD|218847 pfam05995, CDO_I, Cysteine dioxygenase type I. Cysteine
dioxygenase type I (EC:1.13.11.20) converts cysteine to
cysteinesulphinic acid and is the rate-limiting step in
sulphate production.
Length = 170
Score = 112 bits (282), Expect = 9e-31
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 74 IDNLPQLNCLADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNL 133
+ + + LADLV +L + F +V V +++ Y S+P EW KY +FD+ YTRN
Sbjct: 4 STGVLKPSTLADLVAQLLQAFRQAEADVPEVAKLLERYISDPTEWGKYVRFDQTGYTRNR 63
Query: 134 VDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMT 167
+ AGN ++ L +L W G G+ VHDH +H +
Sbjct: 64 I-AGNGEYELWLLSWPPGQGTGVHDHGGSHGALK 96
Score = 97.2 bits (242), Expect = 7e-25
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 185 TLYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDED 244
T YTRN + AGN ++ L +L W G G+ VHDH +H +K+L+G L ET +AWP
Sbjct: 57 TGYTRNRI-AGNGEYELWLLSWPPGQGTGVHDHGGSHGALKVLEGELKETIFAWP----- 110
Query: 245 GEEKPLQVIGKSPLKLNE-VCYINGK 269
+ VI + +L+E YI K
Sbjct: 111 RKRSVEMVIKSNSRRLDEGTQYIFDK 136
>gnl|CDD|112775 pfam03976, PPK2, Polyphosphate kinase 2 (PPK2). Inorganic
polyphosphate (polyP) plays a role in metabolism and
regulation and has been proposed to serve as a energy
source in a pre-ATP world. In prokaryotes, the synthesis
and utilisation of polyP are catalyzed by PPK1, PPK2 and
polyphosphatases. Proteins with a single PPK2 domain
catalyze polyP-dependent phosphorylation of ADP to ATP,
whereas proteins containing 2 fused PPK2 domains
phosphorylate AMP to ADP. The structure of PPK2 from
Pseudomonas aeruginosa has revealed a a 3-layer
alpha/beta/alpha sandwich fold with an alpha-helical lid
similar to the structures of microbial thymidylate
kinases.
Length = 229
Score = 30.0 bits (68), Expect = 1.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 108 MKSYKSNPMEWRKYSKFDKY 127
+K +K +PM+ R K+D Y
Sbjct: 161 LKQWKLSPMDLRSRDKWDDY 180
>gnl|CDD|182910 PRK11026, ftsX, cell division ABC transporter subunit FtsX;
Provisional.
Length = 309
Score = 29.9 bits (68), Expect = 1.4
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 223 FMKMLDGCLTETRYAWPQTDEDGEEKPLQ------VIGKSPLKLNEVCYINGKNSS 272
+ +G + RYAW D + KPL VI S L L VCY+ KN +
Sbjct: 2 IRQFTNGFNEQVRYAWRGALADLKRKPLATLLTVMVIAIS-LTLPSVCYLVWKNVN 56
>gnl|CDD|203472 pfam06522, B12D, NADH-ubiquinone reductase complex 1 MLRQ subunit.
The MLRQ subunit of mitochondrial NADH-ubiquinone
reductase complex I is nuclear and is found in plants,
insects, fungi and higher metazoans. It appears to act
within the membrane and, in mammals, is highly expressed
in muscle and neural tissue, indicative of a role in ATP
generation.
Length = 73
Score = 27.6 bits (62), Expect = 1.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 112 KSNPMEWRKYSKFDKYKYTRNLVD 135
K+NP W KY+ +YK+ R D
Sbjct: 39 KNNPEPWEKYAPHKQYKFYRVNPD 62
>gnl|CDD|217245 pfam02828, L27, L27 domain. The L27 domain is found in receptor
targeting proteins Lin-2 and Lin-7.
Length = 51
Score = 26.8 bits (60), Expect = 1.8
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 72 RSIDNLPQLNCLADLVE---ELHRIFSDDHV 99
R+++ L +L L + E EL ++ H+
Sbjct: 4 RALELLEELQSLLEASEDLAELRKVLQSPHL 34
>gnl|CDD|179648 PRK03776, PRK03776, phosphoglycerol transferase I; Provisional.
Length = 762
Score = 29.7 bits (67), Expect = 2.3
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 61 DGDLDSYYKFP-RSIDNLPQLNCLADLVEELHRIFSDD 97
D D +YYK P ++I N P+LN + E L R + D+
Sbjct: 143 DPDFAAYYKEPAKTIPN-PKLNLVYIYGESLERTYFDN 179
>gnl|CDD|225207 COG2326, COG2326, Uncharacterized conserved protein [Function
unknown].
Length = 270
Score = 28.5 bits (64), Expect = 3.9
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 108 MKSYKSNPMEWRKYSKFDKY 127
+K +K +PM+ ++D Y
Sbjct: 204 LKQWKLSPMDLESRDRWDDY 223
>gnl|CDD|237845 PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase;
Provisional.
Length = 334
Score = 27.8 bits (63), Expect = 6.1
Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 166 MTNETKKSLYTSSLNKVSCT 185
M NETKK L L KVS T
Sbjct: 216 MVNETKKILGDPDL-KVSAT 234
>gnl|CDD|238159 cd00256, VATPase_H, VATPase_H, regulatory vacuolar ATP synthase
subunit H (Vma13p); activation component of the
peripheral V1 complex of V-ATPase, a heteromultimeric
enzyme which uses ATP to actively transport protons
into organelles and extracellular compartments. The
topology is that of a superhelical spiral, in part the
geometry is similar to superhelices composed of
armadillo repeat motifs, as found in importins for
example.
Length = 429
Score = 27.8 bits (62), Expect = 7.4
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 14/74 (18%)
Query: 92 RIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFNLMILCWGEG 151
R + D+ + D +KF+ + K+ + S FD+YK + + +G L W
Sbjct: 288 RKYDDEDL-TDDLKFLTEELKN---SVQDLSSFDEYK---SELRSG-------RLHWSPV 333
Query: 152 HGSSVHDHADAHCF 165
H S +A
Sbjct: 334 HKSEKFWRENADRL 347
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.421
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,226,567
Number of extensions: 1172253
Number of successful extensions: 796
Number of sequences better than 10.0: 1
Number of HSP's gapped: 794
Number of HSP's successfully gapped: 16
Length of query: 279
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 183
Effective length of database: 6,679,618
Effective search space: 1222370094
Effective search space used: 1222370094
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)