RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4445
(279 letters)
>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme
dioxygenases, Fe2+ metalloenzyme, taurine, thioether,
iron, metal- binding; 1.42A {Rattus norvegicus} SCOP:
b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A
Length = 200
Score = 106 bits (266), Expect = 2e-28
Identities = 57/92 (61%), Positives = 73/92 (79%)
Query: 76 NLPQLNCLADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVD 135
L + LADL+ LH +F+ D VNV+ V+ V+++Y+SNP EW Y+KFD+Y+YTRNLVD
Sbjct: 5 ELLKPRTLADLIRILHELFAGDEVNVEEVQAVLEAYESNPAEWALYAKFDQYRYTRNLVD 64
Query: 136 AGNDKFNLMILCWGEGHGSSVHDHADAHCFMT 167
GN KFNLMILCWGEGHGSS+HDH D+HCF+
Sbjct: 65 QGNGKFNLMILCWGEGHGSSIHDHTDSHCFLK 96
Score = 86.0 bits (212), Expect = 2e-20
Identities = 46/84 (54%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 187 YTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDGE 246
YTRNLVD GN KFNLMILCWGEGHGSS+HDH D+HCF+K+L G L ET + WP D +
Sbjct: 58 YTRNLVDQGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWP----DKK 113
Query: 247 EKPLQVIGKSPLKLNEVCYINGKN 270
+ + L+ N+ YIN
Sbjct: 114 SNEMIKKSERTLRENQCAYINDSI 137
>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural
genomics, PSI-2, protein structure initiative; 2.82A
{Bacillus subtilis}
Length = 171
Score = 79.8 bits (196), Expect = 2e-18
Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 81 NCLADLVEELHRIF-SDDHVNVDYVKFVMKSYKSNPMEWRKY-SKFDKYKYTRNLVDAGN 138
+ +L E + IF + +V + +K + + Y + D+Y Y RN + N
Sbjct: 8 HSHMELYECIQDIFGGLKNPSVKDLATSLKQIPNAAKLSQPYIKEPDQYAYGRNAIY-RN 66
Query: 139 DKFNLMILCWGEGHGSSVHDHADAHCFMT 167
++ ++++ ++VHDH +
Sbjct: 67 NELEIIVINIPPNKETTVHDHGQSIGCAM 95
Score = 68.7 bits (167), Expect = 2e-14
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 187 YTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWP 239
Y RN + N++ ++++ ++VHDH + +L+G L + Y
Sbjct: 58 YGRNAIY-RNNELEIIVINIPPNKETTVHDHGQSIGCAMVLEGKLLNSIYRST 109
>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for
structural genomics, JCSG, protein structure INI PSI-2,
oxidoreductase; 1.84A {Ralstonia eutropha} SCOP:
b.82.1.19
Length = 208
Score = 72.0 bits (176), Expect = 2e-15
Identities = 13/98 (13%), Positives = 34/98 (34%), Gaps = 7/98 (7%)
Query: 75 DNLPQLNCLADLVEELHRIF---SDDHVNVDYVKFVMKSYKSNPMEW--RKYSKFDKYKY 129
L L + + L + + + ++ + +W +++ Y
Sbjct: 8 AGRASLAPLREFITGLSALLDEQPGEARILREGGALLARLVARD-DWLPDAFAQPHPEYY 66
Query: 130 TRNLV-DAGNDKFNLMILCWGEGHGSSVHDHADAHCFM 166
+ L+ ++F+++ WG G + +HDH
Sbjct: 67 QQMLLHCDSAERFSIVSFVWGPGQRTPIHDHTVWGLIG 104
Score = 70.1 bits (171), Expect = 1e-14
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 187 YTRNLV-DAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDG 245
Y + L+ ++F+++ WG G + +HDH + ML G + DG
Sbjct: 66 YQQMLLHCDSAERFSIVSFVWGPGQRTPIHDHTVW-GLIGMLRGAEYSQPFVL-----DG 119
Query: 246 EEKPLQVIGKSPLKLNEVCYIN 267
+P+ + L+ V ++
Sbjct: 120 SGRPVLHGEPTRLEPGHVEAVS 141
>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme
iron, cysteine catabolism, oxidoreductase; 2.70A
{Pseudomonas aeruginosa}
Length = 211
Score = 69.3 bits (169), Expect = 2e-14
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 187 YTRNLV-DAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDG 245
Y + L+ +F+++ WG G + VHDH + ML G YA+
Sbjct: 60 YQQYLLHVDSRQRFSVVSFVWGPGQITPVHDH-RVWGLIGMLRGAEYSQPYAFDAGG--- 115
Query: 246 EEKPLQVIGKSPLKLNEVCYIN 267
+P + L+ EV ++
Sbjct: 116 --RPHPSGARRRLEPGEVEALS 135
Score = 63.2 bits (153), Expect = 4e-12
Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 8/97 (8%)
Query: 77 LPQLNCLADLVEELHRIF---SDDHVNVDYVKFVMKSYKSNPMEW--RKYSKFDKYKYTR 131
+ +L+ L + EL + D+ + ++ +W ++ D +Y +
Sbjct: 4 ILRLDRLRQFIGELATLLDSRPDESTLLAQAHPLLAELVHQD-DWLPEDCARPDPQRYQQ 62
Query: 132 NLV-DAGNDKFNLMILCWGEGHGSSVHDHADAHCFMT 167
L+ +F+++ WG G + VHDH +
Sbjct: 63 YLLHVDSRQRFSVVSFVWGPGQITPVHDH-RVWGLIG 98
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.34
Identities = 20/146 (13%), Positives = 41/146 (28%), Gaps = 41/146 (28%)
Query: 20 DKTLVNKAEAREFCG--DI---ERYSCSNDKTL-------VSKCTAYDTNNNTDGDLDSY 67
+LV K I + N+ L + +D+++ LD Y
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 68 -YKF-PRSIDNLPQLNCLADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEW------- 118
Y + N+ + + +F D F+ + + + W
Sbjct: 473 FYSHIGHHLKNIEH----PERMTLFRMVFLDFR-------FLEQKIRHDSTAWNASGSIL 521
Query: 119 ------RKYSKF---DKYKYTRNLVD 135
+ Y + + KY R +
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNA 547
Score = 28.7 bits (63), Expect = 3.0
Identities = 29/215 (13%), Positives = 52/215 (24%), Gaps = 84/215 (39%)
Query: 69 KFPRSID--NLPQLNCLADLVEEL----HRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYS 122
K I NL N ++E L ++I + D+ + K +
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH----SSNIKLRIHSIQAEL 234
Query: 123 K--FDKYKYTRNLVDAGNDKFNLMIL--CWGEGHGSSVHDHADAHCFMTNETKKSLYTSS 178
+ Y L+ +L + + + C K L T
Sbjct: 235 RRLLKSKPYENCLL----------VLLNVQN----AKAWNAFNLSC-------KILLT-- 271
Query: 179 LNKVSCTLYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADA----HCFMKMLDGCLTET 234
TR V D A H + LT
Sbjct: 272 ---------TRF---------------------KQVTDFLSAATTTHISLDHHSMTLTP- 300
Query: 235 RYAWPQTDE--------DGEEKPLQVIGKSPLKLN 261
+ ++ P +V+ +P +L+
Sbjct: 301 ----DEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming
nucleotide, nucleotidyltransfera superfamily; HET: CTP;
1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7
d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A*
1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A*
2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A
2zh4_A ...
Length = 437
Score = 30.0 bits (67), Expect = 1.0
Identities = 9/61 (14%), Positives = 21/61 (34%)
Query: 52 TAYDTNNNTDGDLDSYYKFPRSIDNLPQLNCLADLVEELHRIFSDDHVNVDYVKFVMKSY 111
A +T ++D + FP ++ + + + + YV V+K
Sbjct: 48 YARNTWLKGSLEIDVFLLFPEEFSKEELRERGLEIGKAVLDSYEIRYAEHPYVHGVVKGV 107
Query: 112 K 112
+
Sbjct: 108 E 108
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 1.3
Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 42/113 (37%)
Query: 27 AEARE-FCGDIERYSCS-NDKTLVSKCTAYDTNNNTDGDLDSYYKFPRSIDNLPQLNCLA 84
A + D+ + + S N K + + YDT + +D R + +
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDI--QIPVYDTFDGSD---------LRVLSG----SISE 477
Query: 85 DLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAG 137
+V+ I P++W ++F +++D G
Sbjct: 478 RIVDC---IIRL------------------PVKWETTTQFK----ATHILDFG 505
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural
genomics, PSI, structure initiative; 1.95A
{Streptococcus pyogenes} SCOP: c.61.1.1
Length = 211
Score = 28.9 bits (65), Expect = 1.3
Identities = 8/63 (12%), Positives = 25/63 (39%), Gaps = 15/63 (23%)
Query: 67 YYKFPRSIDNLPQLNC-------LADLVEELHR--IFSDDHVNVDYVKFVMKSYKSNPME 117
Y+ P++ N + +L+ ++D +++ +K +K + +
Sbjct: 155 TYELPKASQNFKEAGIKLITLSNYTELIAVAKLQGYITNDGLHL------LKKFKEDQVN 208
Query: 118 WRK 120
W++
Sbjct: 209 WQQ 211
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich,
oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus
japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A*
1gqg_A*
Length = 350
Score = 29.0 bits (64), Expect = 1.7
Identities = 9/85 (10%), Positives = 22/85 (25%)
Query: 148 WGEGHGSSVHDHADAHCFMTNETKKSLYTSSLNKVSCTLYTRNLVDAGNDKFNLMILCWG 207
W G + D + K L + ++ T N + + +
Sbjct: 200 WHTGANALASTAGDPYFIANGWGPKYLNSQYGYQIVAPFVTATQAQDTNYTLSTISMSTT 259
Query: 208 EGHGSSVHDHADAHCFMKMLDGCLT 232
+ C ++ +G +
Sbjct: 260 PSTVTVPTWSFPGACAFQVQEGRVV 284
>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid
biosynthesis, diaminopimelate biosynthesis, lysine
biosynthesis; HET: SO4; 1.95A {Mycobacterium
tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A
Length = 344
Score = 28.2 bits (64), Expect = 3.2
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 166 MTNETKKSLYTSSLNKVSCT 185
+ E++K L L VS T
Sbjct: 227 LRFESRKILGIPDL-LVSGT 245
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics,
structural genomics consortium; HET: SAH; 1.70A {Homo
sapiens} SCOP: c.66.1.15
Length = 263
Score = 27.7 bits (61), Expect = 4.5
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 53 AYDTNNNTDGDLDSYYKFPRSIDNLPQLNCLADLVEELHRIFSDDHVNVD 102
Y + L +YY F S ++ L +E LH+ F + D
Sbjct: 10 EYQKHFLPRDYLATYYSFDGSPSPEAEM--LKFNLECLHKTFGPGGLQGD 57
>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural
genomics; 2.70A {Thermus thermophilus}
Length = 331
Score = 26.7 bits (60), Expect = 8.5
Identities = 5/20 (25%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 166 MTNETKKSLYTSSLNKVSCT 185
+ ET K ++ ++S T
Sbjct: 210 VVWETHKIFGDDTI-RISAT 228
>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding,
oxidoreductase-oxidoreductase I complex; HET: 25A L14;
1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A*
2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A*
3q1l_A
Length = 366
Score = 26.7 bits (60), Expect = 8.6
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 166 MTNETKKSLYTSSLNKVSCT 185
MT ETKK + S+ VS T
Sbjct: 224 MTKETKKIMEDDSI-AVSAT 242
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.421
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,110,320
Number of extensions: 226458
Number of successful extensions: 495
Number of sequences better than 10.0: 1
Number of HSP's gapped: 492
Number of HSP's successfully gapped: 20
Length of query: 279
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 187
Effective length of database: 4,133,061
Effective search space: 772882407
Effective search space used: 772882407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)