RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4445
(279 letters)
>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus
norvegicus [TaxId: 10116]}
Length = 186
Score = 107 bits (269), Expect = 2e-29
Identities = 56/86 (65%), Positives = 71/86 (82%)
Query: 83 LADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFN 142
LADL+ LH +F+ D VNV+ V+ V+++Y+SNP EW Y+KFD+Y+YTRNLVD GN KFN
Sbjct: 8 LADLIRILHELFAGDEVNVEEVQAVLEAYESNPAEWALYAKFDQYRYTRNLVDQGNGKFN 67
Query: 143 LMILCWGEGHGSSVHDHADAHCFMTN 168
LMILCWGEGHGSS+HDH D+HCF+
Sbjct: 68 LMILCWGEGHGSSIHDHTDSHCFLKL 93
Score = 83.9 bits (207), Expect = 3e-20
Identities = 46/88 (52%), Positives = 56/88 (63%), Gaps = 4/88 (4%)
Query: 183 SCTLYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTD 242
YTRNLVD GN KFNLMILCWGEGHGSS+HDH D+HCF+K+L G L ET + WP
Sbjct: 50 DQYRYTRNLVDQGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWP--- 106
Query: 243 EDGEEKPLQVIGKSPLKLNEVCYINGKN 270
D + + + L+ N+ YIN
Sbjct: 107 -DKKSNEMIKKSERTLRENQCAYINDSI 133
>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia
eutropha [TaxId: 106590]}
Length = 192
Score = 77.3 bits (190), Expect = 8e-18
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 187 YTRNLV-DAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDG 245
Y + L+ ++F+++ WG G + +HDH ML G + DG
Sbjct: 55 YQQMLLHCDSAERFSIVSFVWGPGQRTPIHDHTVWGLIG-MLRGAEYSQPFVL-----DG 108
Query: 246 EEKPLQVIGKSPLKLNEVCYINGK 269
+P+ + L+ V ++
Sbjct: 109 SGRPVLHGEPTRLEPGHVEAVSPT 132
Score = 70.8 bits (173), Expect = 2e-15
Identities = 25/184 (13%), Positives = 54/184 (29%), Gaps = 31/184 (16%)
Query: 83 LADLVEELHRI---FSDDHVNVDYVKFVMKSYKSNPMEW--RKYSKFDKYKYTRNLV-DA 136
L + + L + + + ++ + +W +++ Y + L+
Sbjct: 5 LREFITGLSALLDEQPGEARILREGGALLARLVARD-DWLPDAFAQPHPEYYQQMLLHCD 63
Query: 137 GNDKFNLMILCWGEGHGSSVHDHADAHCFMT--NETKKSLYT-----SSLNKVSCTLYTR 189
++F+++ WG G + +HDH + + T
Sbjct: 64 SAERFSIVSFVWGPGQRTPIHDHTVWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEP 123
Query: 190 NLVDAGNDKFNLMILCWGEGHGSSVHDHADA----HCFMKMLDGCLTETRYAWPQTDEDG 245
V+A + G+ H H + + G R + E G
Sbjct: 124 GHVEAVSPTV-------GDIHRVHNAYDDRVSISIHVYGANIGGV---RRSVY---TEAG 170
Query: 246 EEKP 249
E KP
Sbjct: 171 ERKP 174
>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus
thermophilus [TaxId: 274]}
Length = 105
Score = 29.8 bits (66), Expect = 0.12
Identities = 8/79 (10%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Query: 117 EWRKYSKFDKYKYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMTNETKKSLYT 176
+ ++ ++++ K + V +++ + G VH H + + +
Sbjct: 5 DLKRLARYNPEKMAKIPV-FQSERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVR 63
Query: 177 SSLNKVSCTLYTRNLVDAG 195
+ AG
Sbjct: 64 VGEEEALLAPGMAAFAPAG 82
Score = 26.7 bits (58), Expect = 1.4
Identities = 11/79 (13%), Positives = 20/79 (25%), Gaps = 8/79 (10%)
Query: 194 AGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDED--------G 245
+++ + G VH H + L+G + G
Sbjct: 23 FQSERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEEEALLAPGMAAFAPAG 82
Query: 246 EEKPLQVIGKSPLKLNEVC 264
++ SP L V
Sbjct: 83 APHGVRNESASPALLLVVT 101
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal
domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 142
Score = 28.3 bits (63), Expect = 0.51
Identities = 10/78 (12%), Positives = 24/78 (30%)
Query: 35 DIERYSCSNDKTLVSKCTAYDTNNNTDGDLDSYYKFPRSIDNLPQLNCLADLVEELHRIF 94
R + + A +T ++D + FP ++ + + +
Sbjct: 31 LRRRLDELGVEYVFVGSYARNTWLKGSLEIDVFLLFPEEFSKEELRERGLEIGKAVLDSY 90
Query: 95 SDDHVNVDYVKFVMKSYK 112
+ YV V+K +
Sbjct: 91 EIRYAEHPYVHGVVKGVE 108
>d1z4ea1 d.108.1.1 (A:4-153) Transcriptional regulator BH1968
{Bacillus halodurans [TaxId: 86665]}
Length = 150
Score = 28.4 bits (62), Expect = 0.69
Identities = 8/43 (18%), Positives = 12/43 (27%)
Query: 147 CWGEGHGSSVHDHADAHCFMTNETKKSLYTSSLNKVSCTLYTR 189
G+G GS + A L T + Y +
Sbjct: 94 ARGQGIGSQLVCWAIERAKERGCHLIQLTTDKQRPDALRFYEQ 136
>d1u6ma_ d.108.1.1 (A:) Putative acetyltransferase EF0945
{Enterococcus faecalis [TaxId: 1351]}
Length = 189
Score = 26.6 bits (57), Expect = 3.2
Identities = 9/43 (20%), Positives = 13/43 (30%)
Query: 147 CWGEGHGSSVHDHADAHCFMTNETKKSLYTSSLNKVSCTLYTR 189
G G GS + D + + L N + LY
Sbjct: 123 FRGMGIGSKLLDALPEVAKASGKQALGLNVDFDNPGARKLYAS 165
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 26.1 bits (57), Expect = 5.5
Identities = 13/81 (16%), Positives = 22/81 (27%), Gaps = 9/81 (11%)
Query: 64 LDSYYKFPRSIDNLPQLNCLADLVEELHRIFSDDHVNV-DYVKFV--MKSYKSN-PMEWR 119
D++++F R+ FS + + + Y R
Sbjct: 40 GDAFHRFNRADMKAEL----DRRYAAGDATFSHFSYEANELKELERVFREYGETGQGRTR 95
Query: 120 KYSKFDKYKYTRNLVDAGNDK 140
Y D + R V GN
Sbjct: 96 TYV-HDDAEAARTGVAPGNFT 115
>d1gbsa_ d.2.1.5 (A:) Lysozyme {Australian black swan (Cygnus
atratus) [TaxId: 8868]}
Length = 185
Score = 25.1 bits (54), Expect = 9.2
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 83 LADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLV 134
L D ++ + + F +K + +Y + R Y++ D +
Sbjct: 120 LTDFIKRIQKKF-PSWTKDQQLKGGISAYNAGAGNVRSYARMDIGTTHDDYA 170
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.421
Gapped
Lambda K H
0.267 0.0550 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,032,298
Number of extensions: 45996
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 14
Length of query: 279
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,254,276
Effective search space: 244583820
Effective search space used: 244583820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)