BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4447
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 85/180 (47%), Gaps = 3/180 (1%)
Query: 12 FDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEFGAIAPKTPQGYQVIFHR 71
FDL+ + ++ Y+ R PE + D++ ++ K G + + P G +V+ +R
Sbjct: 61 FDLDLAWRLLKNYYKWRAECPEISA--DLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYR 118
Query: 72 LQQFEPSKYVFQDSVRLLAMSIDACLH-VEGTVPGYIFLFDMAGVRLGHVLRLSVGQLSK 130
+ ++P + D R+ ++ + + VE G +FD+ G + H +++ K
Sbjct: 119 IAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKK 178
Query: 131 FFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVYEFVP 190
L + P++++GIH++N + + ++KPF+ + + +H H S+ + P
Sbjct: 179 IAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP 238
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 84/180 (46%), Gaps = 3/180 (1%)
Query: 12 FDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEFGAIAPKTPQGYQVIFHR 71
FDL+ + ++ Y+ R PE + D++ ++ K G + + P G +V+ +R
Sbjct: 45 FDLDLAWRLLKNYYKWRAECPEISA--DLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYR 102
Query: 72 LQQFEPSKYVFQDSVRLLAMSIDACLH-VEGTVPGYIFLFDMAGVRLGHVLRLSVGQLSK 130
+ ++P + D R+ ++ + + VE G +FD+ G + H +++ K
Sbjct: 103 IAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKK 162
Query: 131 FFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVYEFVP 190
L + P++++GIH++N + + +KPF+ + + +H H S+ + P
Sbjct: 163 IAAVLTDSFPLKVRGIHLINEPVIFHAVFSXIKPFLTEKIKERIHXHGNNYKQSLLQHFP 222
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 7/195 (3%)
Query: 12 FDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEF-GAIAPKTPQGYQVIFH 70
F++ + + Y R PE F D PE + + + G ++ + G V+
Sbjct: 104 FNVGRAYELLRGYVNFRLQYPELF---DSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLF 160
Query: 71 RLQQFEPSKYVFQDSVRLLAMSIDACLHVEGT-VPGYIFLFDMAGVRLGHVLRLSVGQLS 129
++ ++ + F + ++ ++ L E T + G+ + + G + L L
Sbjct: 161 NIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLR 220
Query: 130 KFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVYEFV 189
K LQ+ P R K IH ++ VVKPF+K LL V H + D+S Y+ +
Sbjct: 221 KMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGD-DLSGFYQEI 279
Query: 190 PPKCIPGGDLKGDLP 204
+P D G LP
Sbjct: 280 DENILP-SDFGGTLP 293
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 78/195 (40%), Gaps = 7/195 (3%)
Query: 12 FDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEF-GAIAPKTPQGYQVIFH 70
F++ + + Y R PE F D PE + + + G ++ + G V
Sbjct: 104 FNVGRAYELLRGYVNFRLQYPELF---DSLSPEAVRCTIEAGYPGVLSSRDKYGRVVXLF 160
Query: 71 RLQQFEPSKYVFQDSVRLLAMSIDACLHVEGT-VPGYIFLFDMAGVRLGHVLRLSVGQLS 129
++ ++ + F + ++ ++ L E T + G+ + + G L L
Sbjct: 161 NIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTXQQAASLRTSDLR 220
Query: 130 KFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVYEFV 189
K LQ+ P K IH ++ VVKPF+K LL V H + D+S Y+ +
Sbjct: 221 KXVDXLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGD-DLSGFYQEI 279
Query: 190 PPKCIPGGDLKGDLP 204
+P D G LP
Sbjct: 280 DENILP-SDFGGTLP 293
>pdb|1QRJ|B Chain B, Solution Structure Of Htlv-I Capsid Protein
Length = 199
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 53 EFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH 98
E AP +PQ Q I +QQF+P+ QD ++ L S+ A LH
Sbjct: 11 EVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLH 56
>pdb|1G03|A Chain A, Nmr Structure Of N-Terminal Domain Of Htlv-I Ca1-134
Length = 134
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 53 EFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH 98
E AP +PQ Q I +QQF+P+ QD ++ L S+ A LH
Sbjct: 26 EVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLH 71
>pdb|3P3L|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Wildtype) From Streptomyces Thioluteus
pdb|3P3L|B Chain B, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Wildtype) From Streptomyces Thioluteus
Length = 406
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 103 VPGYIFLFDMAGVRLGHVLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVV 162
+ G+ L DM G G V V F L RL+G L T P + + V
Sbjct: 65 ISGFRGLVDMVGTPEGPVRDFMV----DFLQSLDGADHRRLRG---LATHPFTPRRITAV 117
Query: 163 KPFMKKDLLSLVHFHPEGDISSVYEFVPP 191
+PF++ + L+ P+GD V F P
Sbjct: 118 QPFVRSTVEQLIDKLPQGDFDFVQHFAHP 146
>pdb|3P3O|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Ntermii) From Streptomyces Thioluteus
pdb|3P3X|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Nterm- Aurh-I) From Streptomyces Thioluteus
pdb|3P3X|B Chain B, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Nterm- Aurh-I) From Streptomyces Thioluteus
pdb|3P3Z|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh From Streptomyces Thioluteus In Complex With
Ancymidol
Length = 416
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 103 VPGYIFLFDMAGVRLGHVLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVV 162
+ G+ L DM G G V V F L RL+G L T P + + V
Sbjct: 75 ISGFRGLVDMVGTPEGPVRDFMV----DFLQSLDGADHRRLRG---LATHPFTPRRITAV 127
Query: 163 KPFMKKDLLSLVHFHPEGDISSVYEFVPP 191
+PF++ + L+ P+GD V F P
Sbjct: 128 QPFVRSTVEQLIDKLPQGDFDFVQHFPHP 156
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 122 RLSVGQLSKF--FLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPF-MKKDLLSLVHFHP 178
RL++ +L + +L +G P L L+ ID ++ + PF + K L+ HP
Sbjct: 73 RLALHELKNLTQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHP 132
Query: 179 EGDISSVYEFVPPKCIPGGDLKGD 202
EF PPK + DL G+
Sbjct: 133 ASGRVYNIEFNPPKTVGIDDLTGE 156
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 11/56 (19%)
Query: 141 VRLKGIHILNTRPLID-----KIMFVVKPF-MKKDLL--SLVHFHPEGDISSVYEF 188
VRL +HI + L+D + + VV P+ ++ DLL SLVH HPE +I SV F
Sbjct: 513 VRLVSLHI---QALVDAGVPARDIAVVSPYNLQVDLLRQSLVHRHPELEIKSVDGF 565
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 11/56 (19%)
Query: 141 VRLKGIHILNTRPLID-----KIMFVVKPF-MKKDLL--SLVHFHPEGDISSVYEF 188
VRL +HI + L+D + + VV P+ ++ DLL SLVH HPE +I SV F
Sbjct: 513 VRLVSLHI---QALVDAGVPARDIAVVSPYNLQVDLLRQSLVHRHPELEIKSVDGF 565
>pdb|1V8B|A Chain A, Crystal Structure Of A Hydrolase
pdb|1V8B|B Chain B, Crystal Structure Of A Hydrolase
pdb|1V8B|C Chain C, Crystal Structure Of A Hydrolase
pdb|1V8B|D Chain D, Crystal Structure Of A Hydrolase
Length = 479
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 115 VRLGHVLRLS----VGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMF 160
++L H+L++ VG + F +Q KGIHI N +P +D+I
Sbjct: 326 IKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQVDRITL 375
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,725,046
Number of Sequences: 62578
Number of extensions: 316069
Number of successful extensions: 657
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 18
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)