BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4447
(261 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9BTX7|TTPAL_HUMAN Alpha-tocopherol transfer protein-like OS=Homo sapiens GN=TTPAL
PE=2 SV=2
Length = 342
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 9/219 (4%)
Query: 12 FDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEFGAIAPKT-PQGYQVIFH 70
FD + + + Y + R + PE F+ +P L F + P T P+G V+
Sbjct: 90 FDYDRALQLLVNYHSCRRSWPEVFNNL---KPSALKDVLASGFLTVLPHTDPRGCHVVCI 146
Query: 71 RLQQFEPSKYVFQDSVRLLAMSIDACLHVEGT-VPGYIFLFDMAGVRLGHVLRLSVGQLS 129
R ++ PS Y +++R + ++++ + E T V G + L D GV L
Sbjct: 147 RPDRWIPSNYPITENIRAIYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFGPFIAK 206
Query: 130 KFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVYEFV 189
K LQ+G P+R+K +H++N + I ++KPF+K+ + + H D++S++ +
Sbjct: 207 KVIGILQDGFPIRIKAVHVVNEPRIFKGIFAIIKPFLKEKIANRFFLH-GSDLNSLHTNL 265
Query: 190 PPKCIPG--GDLKGDLPDSKTLHNEYVEWMKNLVEFFLQ 226
P +P G G+L D+ T + + + V+ F Q
Sbjct: 266 PRSILPKEYGGTAGEL-DTATWNAVLLASEDDFVKEFCQ 303
>sp|Q5RFR0|TTPAL_PONAB Alpha-tocopherol transfer protein-like OS=Pongo abelii GN=TTPAL
PE=2 SV=1
Length = 342
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 9/219 (4%)
Query: 12 FDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEFGAIAPKT-PQGYQVIFH 70
FD + + + Y + R + PE F+ +P L F + P T P+G V+
Sbjct: 90 FDYDRALQLLVNYHSCRRSWPEVFNNL---KPSALKDVLASGFLTVLPHTDPRGCHVVCI 146
Query: 71 RLQQFEPSKYVFQDSVRLLAMSIDACLHVEGT-VPGYIFLFDMAGVRLGHVLRLSVGQLS 129
R ++ PS Y +++R + ++++ + E T V G + L D GV L
Sbjct: 147 RPDRWIPSNYPITENIRAIYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFGPFIAK 206
Query: 130 KFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVYEFV 189
K LQ+G P+R+K +H++N + I ++KPF+K+ + + H D++S++ +
Sbjct: 207 KVIGILQDGFPIRIKAVHVVNEPRIFKGIFAIIKPFLKEKIANRFFLH-GSDLNSLHTNL 265
Query: 190 PPKCIPG--GDLKGDLPDSKTLHNEYVEWMKNLVEFFLQ 226
P +P G G+L D+ T + + + V+ F Q
Sbjct: 266 PRSILPKEYGGTAGEL-DTATWNAVLLASEDDFVKEFCQ 303
>sp|Q9D3D0|TTPAL_MOUSE Alpha-tocopherol transfer protein-like OS=Mus musculus GN=Ttpal
PE=2 SV=3
Length = 343
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 103/219 (47%), Gaps = 9/219 (4%)
Query: 12 FDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEFGAIAPKT-PQGYQVIFH 70
FD + + + Y R + PE FS RP L F + P T P+G V+
Sbjct: 91 FDYDRALQLLVNYHGCRRSWPEVFSNL---RPSALKDVLNSGFLTVLPHTDPRGCHVLCI 147
Query: 71 RLQQFEPSKYVFQDSVRLLAMSIDACLHVEGT-VPGYIFLFDMAGVRLGHVLRLSVGQLS 129
R ++ PS Y +++R + ++++ + E T V G + L D GV L
Sbjct: 148 RPDRWIPSNYPITENIRAVYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFGPFIAK 207
Query: 130 KFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVYEFV 189
K LQ+G P+R+K +HI+N + I ++KPF+K+ + + H D++S++ +
Sbjct: 208 KVIGILQDGFPIRIKAVHIVNEPRIFKGIFAIIKPFLKEKIANRFFLH-GSDLNSLHTNL 266
Query: 190 PPKCIPG--GDLKGDLPDSKTLHNEYVEWMKNLVEFFLQ 226
P +P G G+L D+ + + + ++ V+ F Q
Sbjct: 267 PRNILPKEYGGTAGEL-DTASWNAVLLASEEDFVKEFCQ 304
>sp|P41034|TTPA_RAT Alpha-tocopherol transfer protein OS=Rattus norvegicus GN=Ttpa PE=1
SV=1
Length = 278
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 87/180 (48%), Gaps = 3/180 (1%)
Query: 12 FDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEFGAIAPKTPQGYQVIFHR 71
FDL+ + ++ Y+ R PE + D++ +L K G + + P G +V+ +R
Sbjct: 61 FDLDLAWRLMKNYYKWRAECPELSA--DLHPRSILGLLKAGYHGVLRSRDPTGSRVLIYR 118
Query: 72 LQQFEPSKYVFQDSVRLLAMSIDACLH-VEGTVPGYIFLFDMAGVRLGHVLRLSVGQLSK 130
+ ++P + D R+ ++ + + VE G +FD+ G ++ H +++ K
Sbjct: 119 ISYWDPKVFTAYDVFRVSLITSELIVQEVETQRNGVKAIFDLEGWQISHAFQITPSVAKK 178
Query: 131 FFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVYEFVP 190
+ + P++++GIH++N + + ++KPF+ + + +H H SS+ + P
Sbjct: 179 IAAVVTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKGRIHLHGNNYKSSLLQHFP 238
>sp|P49638|TTPA_HUMAN Alpha-tocopherol transfer protein OS=Homo sapiens GN=TTPA PE=1 SV=1
Length = 278
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 85/180 (47%), Gaps = 3/180 (1%)
Query: 12 FDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEFGAIAPKTPQGYQVIFHR 71
FDL+ + ++ Y+ R PE + D++ ++ K G + + P G +V+ +R
Sbjct: 61 FDLDLAWRLLKNYYKWRAECPEISA--DLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYR 118
Query: 72 LQQFEPSKYVFQDSVRLLAMSIDACLH-VEGTVPGYIFLFDMAGVRLGHVLRLSVGQLSK 130
+ ++P + D R+ ++ + + VE G +FD+ G + H +++ K
Sbjct: 119 IAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKK 178
Query: 131 FFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVYEFVP 190
L + P++++GIH++N + + ++KPF+ + + +H H S+ + P
Sbjct: 179 IAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP 238
>sp|Q8BWP5|TTPA_MOUSE Alpha-tocopherol transfer protein OS=Mus musculus GN=Ttpa PE=2 SV=1
Length = 278
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 85/180 (47%), Gaps = 3/180 (1%)
Query: 12 FDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEFGAIAPKTPQGYQVIFHR 71
FDL+ + ++ Y+ R PE + D+ +L K G + + G +V+ +R
Sbjct: 61 FDLDLAWRLMKNYYKWRAECPELSA--DLRPRSILGLLKAGYHGVLRSRDSTGSRVLIYR 118
Query: 72 LQQFEPSKYVFQDSVRLLAMSIDACLH-VEGTVPGYIFLFDMAGVRLGHVLRLSVGQLSK 130
+ ++P + D R+ ++ + + VE G +FD+ G ++ H +++ K
Sbjct: 119 IAYWDPKVFTAYDVFRVSLITSELIVQEVETQRNGVKAIFDLEGWQVSHAFQITPSVAKK 178
Query: 131 FFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVYEFVP 190
L + P++++GIH++N + + ++KPF+ + + +H H SS+ + P
Sbjct: 179 IAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKDRIHLHGNNYKSSMLQHFP 238
>sp|A6JUQ6|CLVS2_RAT Clavesin-2 OS=Rattus norvegicus GN=Clvs2 PE=1 SV=1
Length = 327
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 108/253 (42%), Gaps = 22/253 (8%)
Query: 7 HHSCYFDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEFGAIAPKTPQGYQ 66
HH F L A YF R + F P + K G +A G +
Sbjct: 64 HHFEAFRLLAQ------YFEYRQQNLDMFKSFKATDPGIKQALKDGFPGGLANLDHYGRK 117
Query: 67 VIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH-VEGTVPGYIFLFDMAGVRLGHVLRLSV 125
++ ++ S+Y D +R + +S++A + E V G++ + D + +L+
Sbjct: 118 ILVLFAANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTP 177
Query: 126 GQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSV 185
L LQ+ P R GIH +N I + V++PF+K+ + H +++S+
Sbjct: 178 SMLRLAIEGLQDSFPARFGGIHFVNQPWYIHALYTVIRPFLKEKTRKRIFLH-GNNLNSL 236
Query: 186 YEFVPPKCIPGGDLKGDLP--DSKTLHNEYVEWMKNLVEF-FLQDEKYQVDESKRVKN-- 240
++ + P+ +P + G LP D T W + L++ + D +Y VD N
Sbjct: 237 HQLIHPEILP-SEFGGMLPPYDMGT-------WARTLLDHEYDDDSEYNVDSYSMPVNEV 288
Query: 241 -KKSAAKQLEKTQ 252
K+ + K ++++Q
Sbjct: 289 DKELSPKSMKRSQ 301
>sp|Q95KF7|CLVS2_MACFA Clavesin-2 OS=Macaca fascicularis GN=CLVS2 PE=2 SV=2
Length = 327
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 102/247 (41%), Gaps = 23/247 (9%)
Query: 7 HHSCYFDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEFGAIAPKTPQGYQ 66
HH F L A YF R + F P + K G +A G +
Sbjct: 64 HHFEAFRLLAQ------YFEYRQQNLDMFKSFKATDPGIKQALKDGFPGGLANLDHYGRK 117
Query: 67 VIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH-VEGTVPGYIFLFDMAGVRLGHVLRLSV 125
++ ++ S+Y D +R + +S++A + E V G++ + D + +L+
Sbjct: 118 ILVLFAANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTP 177
Query: 126 GQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSV 185
L LQ+ P R GIH +N I + V++PF+K+ + H +++S+
Sbjct: 178 SMLRLAIEGLQDSFPARFGGIHFVNQPWYIHALYTVIRPFLKEKTRKRIFLH-GNNLNSL 236
Query: 186 YEFVPPKCIPGGDLKGDLP--DSKTLHNEYVEWMKNLVEFFLQDEKYQVDESKRVKNKKS 243
++ + P+ +P + G LP D T W + L+ D +Y D V +
Sbjct: 237 HQLIHPEILP-SEFGGMLPPYDMGT-------WARTLL-----DHEYDDDSEYNVDSYSM 283
Query: 244 AAKQLEK 250
K++EK
Sbjct: 284 PVKEVEK 290
>sp|Q5SYC1|CLVS2_HUMAN Clavesin-2 OS=Homo sapiens GN=CLVS2 PE=2 SV=1
Length = 327
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 102/247 (41%), Gaps = 23/247 (9%)
Query: 7 HHSCYFDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEFGAIAPKTPQGYQ 66
HH F L A YF R + F P + K G +A G +
Sbjct: 64 HHFEAFRLLAQ------YFEYRQQNLDMFKSFKATDPGIKQALKDGFPGGLANLDHYGRK 117
Query: 67 VIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH-VEGTVPGYIFLFDMAGVRLGHVLRLSV 125
++ ++ S+Y D +R + +S++A + E V G++ + D + +L+
Sbjct: 118 ILVLFAANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTP 177
Query: 126 GQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSV 185
L LQ+ P R GIH +N I + V++PF+K+ + H +++S+
Sbjct: 178 SMLRLAIEGLQDSFPARFGGIHFVNQPWYIHALYTVIRPFLKEKTRKRIFLH-GNNLNSL 236
Query: 186 YEFVPPKCIPGGDLKGDLP--DSKTLHNEYVEWMKNLVEFFLQDEKYQVDESKRVKNKKS 243
++ + P+ +P + G LP D T W + L+ D +Y D V +
Sbjct: 237 HQLIHPEILP-SEFGGMLPPYDMGT-------WARTLL-----DHEYDDDSEYNVDSYSM 283
Query: 244 AAKQLEK 250
K++EK
Sbjct: 284 PVKEVEK 290
>sp|Q8BG92|CLVS2_MOUSE Clavesin-2 OS=Mus musculus GN=Clvs2 PE=2 SV=1
Length = 327
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 109/253 (43%), Gaps = 22/253 (8%)
Query: 7 HHSCYFDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEFGAIAPKTPQGYQ 66
HH F L A YF R + F P + K G +A G +
Sbjct: 64 HHFEAFRLLAQ------YFEYRQQNLDMFKSFKATDPGIKQALKDGFPGGLANLDHYGRK 117
Query: 67 VIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH-VEGTVPGYIFLFDMAGVRLGHVLRLSV 125
++ ++ S+Y D +R + +S++A + E V G++ + D + +L+
Sbjct: 118 ILVLFAANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTP 177
Query: 126 GQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSV 185
L LQ+ P R GIH +N I + V++PF+K+ + H +++S+
Sbjct: 178 NMLRLAIEGLQDSFPARFGGIHFVNQPWYIHALYTVIRPFLKEKTRKRIFLH-GNNLNSL 236
Query: 186 YEFVPPKCIPGGDLKGDLP--DSKTLHNEYVEWMKNLVEF-FLQDEKYQVDESK---RVK 239
++ + P+ +P + G LP D T W + L++ + D +Y VD +
Sbjct: 237 HQLIHPEILP-SEFGGMLPPYDMGT-------WARTLLDHEYDDDSEYNVDSYNMPVKDV 288
Query: 240 NKKSAAKQLEKTQ 252
+K+ + K ++++Q
Sbjct: 289 DKELSPKSMKRSQ 301
>sp|Q5SPP0|CLVS2_DANRE Clavesin-2 OS=Danio rerio GN=clvs2 PE=2 SV=1
Length = 329
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 81/182 (44%), Gaps = 3/182 (1%)
Query: 24 YFTTRTNTPEFFSKRDINRPELLAQSKVVEFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQ 83
YF R + F P + K G ++ G +++ ++ S+Y F
Sbjct: 75 YFEYRQQNLDMFKNLKATDPGIKQALKDGFPGVLSNLDRYGRKILVLFAANWDQSRYTFV 134
Query: 84 DSVRLLAMSIDACLH-VEGTVPGYIFLFDMAGVRLGHVLRLSVGQLSKFFLYLQEGLPVR 142
D +R + +S++A + E V G++ + D + +L+ L LQ+ P R
Sbjct: 135 DILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRLAIEGLQDSFPAR 194
Query: 143 LKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVYEFVPPKCIPGGDLKGD 202
GIH +N I + V++PF+K + H +++S+++ + P+ +P +L G
Sbjct: 195 FGGIHFVNQPWYIHALYTVIRPFLKDKTRKRIFMH-GNNLNSLHQLILPEILP-SELGGM 252
Query: 203 LP 204
LP
Sbjct: 253 LP 254
>sp|P12271|RLBP1_HUMAN Retinaldehyde-binding protein 1 OS=Homo sapiens GN=RLBP1 PE=1 SV=2
Length = 317
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 7/195 (3%)
Query: 12 FDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEF-GAIAPKTPQGYQVIFH 70
F++ + + Y R PE F D PE + + + G ++ + G V+
Sbjct: 105 FNVGRAYELLRGYVNFRLQYPELF---DSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLF 161
Query: 71 RLQQFEPSKYVFQDSVRLLAMSIDACLHVEGT-VPGYIFLFDMAGVRLGHVLRLSVGQLS 129
++ ++ + F + ++ ++ L E T + G+ + + G + L L
Sbjct: 162 NIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLR 221
Query: 130 KFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVYEFV 189
K LQ+ P R K IH ++ VVKPF+K LL V H + D+S Y+ +
Sbjct: 222 KMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGD-DLSGFYQEI 280
Query: 190 PPKCIPGGDLKGDLP 204
+P D G LP
Sbjct: 281 DENILP-SDFGGTLP 294
>sp|P10123|RLBP1_BOVIN Retinaldehyde-binding protein 1 OS=Bos taurus GN=RLBP1 PE=1 SV=4
Length = 317
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 7/183 (3%)
Query: 24 YFTTRTNTPEFFSKRDINRPELLAQSKVVEF-GAIAPKTPQGYQVIFHRLQQFEPSKYVF 82
Y R PE F D PE + + + G ++ + G V+ ++ ++ + F
Sbjct: 117 YVNFRLQYPELF---DSLSPEAVRCTVEAGYPGVLSTRDKYGRVVMLFNIENWDSEEITF 173
Query: 83 QDSVRLLAMSIDACLHVEGT-VPGYIFLFDMAGVRLGHVLRLSVGQLSKFFLYLQEGLPV 141
+ ++ + ++ L E T + G+ + + G + L L K LQ+ P
Sbjct: 174 DEILQAYCVILEKLLENEETQINGFCIIENFKGFTMQQAAGLRPSDLRKMVDMLQDSFPA 233
Query: 142 RLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVYEFVPPKCIPGGDLKG 201
R K IH + VVKPF+K LL V H E D+SS Y+ +P D G
Sbjct: 234 RFKAIHFIYQPWYFTTTYNVVKPFLKSKLLQRVFVHGE-DLSSFYQEFDEDILP-SDFGG 291
Query: 202 DLP 204
LP
Sbjct: 292 TLP 294
>sp|Q5M7E1|CLVS1_XENLA Clavesin-1 OS=Xenopus laevis GN=clvs1 PE=2 SV=1
Length = 332
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 70/151 (46%), Gaps = 3/151 (1%)
Query: 55 GAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH-VEGTVPGYIFLFDMA 113
G + + G +++ ++ S+ F D +R + +S++ + E + G+I + D +
Sbjct: 106 GVLENRDHYGRKILLLFAANWDQSRNSFVDILRAILLSLEVLIEDQELQINGFILIIDWS 165
Query: 114 GVRLGHVLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSL 173
+L+ L LQ+ P R G+H +N I + ++KPF+K
Sbjct: 166 NFSFKQASKLTPSILRLAIEGLQDSFPARFGGVHFVNQPWYIHALYTIIKPFLKDKTRKR 225
Query: 174 VHFHPEGDISSVYEFVPPKCIPGGDLKGDLP 204
+ H +++S+++ + P C+P + G LP
Sbjct: 226 IFLH-GNNLNSLHQLIHPDCLP-SEFGGTLP 254
>sp|Q5RCA6|CLVS1_PONAB Clavesin-1 OS=Pongo abelii GN=CLVS1 PE=2 SV=1
Length = 354
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 84/197 (42%), Gaps = 8/197 (4%)
Query: 55 GAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH-VEGTVPGYIFLFDMA 113
G + + G +++ ++ S+ F D +R + +S++ + E + G+I + D +
Sbjct: 128 GVLENRDHYGRKILLLFAANWDQSRNSFTDILRAILLSLEVLIEDPELQINGFILIIDWS 187
Query: 114 GVRLGHVLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSL 173
+L+ L LQ+ P R G+H +N I + ++KPF+K
Sbjct: 188 NFSFKQASKLTPSILKLAIEGLQDSFPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKR 247
Query: 174 VHFHPEGDISSVYEFVPPKCIPGGDLKGDLPDSKTLHNEYVEWMKNLVEFFLQDEKYQVD 233
+ H +++S+++ + P+ +P + G LP + W + L+ DE
Sbjct: 248 IFLH-GNNLNSLHQLIHPEFLP-SEFGGTLPPY-----DMGTWARTLLGPDYSDENDYTH 300
Query: 234 ESKRVKNKKSAAKQLEK 250
S + K + LE+
Sbjct: 301 TSYNAMHVKHTSSNLER 317
>sp|Q8IUQ0|CLVS1_HUMAN Clavesin-1 OS=Homo sapiens GN=CLVS1 PE=1 SV=1
Length = 354
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 84/197 (42%), Gaps = 8/197 (4%)
Query: 55 GAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH-VEGTVPGYIFLFDMA 113
G + + G +++ ++ S+ F D +R + +S++ + E + G+I + D +
Sbjct: 128 GVLENRDHYGRKILLLFAANWDQSRNSFTDILRAILLSLEVLIEDPELQINGFILIIDWS 187
Query: 114 GVRLGHVLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSL 173
+L+ L LQ+ P R G+H +N I + ++KPF+K
Sbjct: 188 NFSFKQASKLTPSILKLAIEGLQDSFPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKR 247
Query: 174 VHFHPEGDISSVYEFVPPKCIPGGDLKGDLPDSKTLHNEYVEWMKNLVEFFLQDEKYQVD 233
+ H +++S+++ + P+ +P + G LP + W + L+ DE
Sbjct: 248 IFLH-GNNLNSLHQLIHPEFLP-SEFGGTLPPY-----DMGTWARTLLGPDYSDENDYTH 300
Query: 234 ESKRVKNKKSAAKQLEK 250
S + K + LE+
Sbjct: 301 TSYNAMHVKHTSSNLER 317
>sp|Q9D4C9|CLVS1_MOUSE Clavesin-1 OS=Mus musculus GN=Clvs1 PE=2 SV=1
Length = 354
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 83/197 (42%), Gaps = 8/197 (4%)
Query: 55 GAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH-VEGTVPGYIFLFDMA 113
G + + G +++ ++ S+ F D +R + +S++ + E + G+I + D +
Sbjct: 128 GVLENRDHYGRKILLLFAANWDQSRNSFTDILRAILLSLEVLIEDPELQINGFILIIDWS 187
Query: 114 GVRLGHVLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSL 173
+L+ L LQ+ P R G+H +N I + ++KPF+K
Sbjct: 188 NFSFKQASKLTPSILKLAIEGLQDSFPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKR 247
Query: 174 VHFHPEGDISSVYEFVPPKCIPGGDLKGDLPDSKTLHNEYVEWMKNLVEFFLQDEKYQVD 233
+ H +++S+++ + P+ +P + G LP + W + L+ DE
Sbjct: 248 IFLH-GNNLNSLHQLIHPEFLP-SEFGGTLPPY-----DMGTWARTLLGPDYSDENDYTH 300
Query: 234 ESKRVKNKKSAAKQLEK 250
S + K LE+
Sbjct: 301 TSYNAMHVKHTCSNLER 317
>sp|Q9Z275|RLBP1_MOUSE Retinaldehyde-binding protein 1 OS=Mus musculus GN=Rlbp1 PE=2 SV=3
Length = 317
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 5/194 (2%)
Query: 12 FDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEFGAIAPKTPQGYQVIFHR 71
FD+ + ++ Y R PE F ++ L + G ++ + G V+
Sbjct: 105 FDVGRAYELLKGYVNFRLQYPELFDS--LSMEALRCTIEAGYPGVLSSRDKYGRVVMLFN 162
Query: 72 LQQFEPSKYVFQDSVRLLAMSIDACLHVEGT-VPGYIFLFDMAGVRLGHVLRLSVGQLSK 130
++ + + F + ++ ++ L E T + G+ + + G + L L K
Sbjct: 163 IENWHCEEVTFDEILQAYCFILEKLLENEETQINGFCIVENFKGFTMQQAAGLRPSDLKK 222
Query: 131 FFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVYEFVP 190
LQ+ P R K IH ++ VVKPF+K LL V H + D+ ++ +
Sbjct: 223 MVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKNKLLQRVFVHGD-DLDGFFQEID 281
Query: 191 PKCIPGGDLKGDLP 204
+P D G LP
Sbjct: 282 ENILP-ADFGGTLP 294
>sp|A6JFQ6|CLVS1_RAT Clavesin-1 OS=Rattus norvegicus GN=Clvs1 PE=1 SV=1
Length = 354
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 70/151 (46%), Gaps = 3/151 (1%)
Query: 55 GAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH-VEGTVPGYIFLFDMA 113
G + + G +++ ++ S+ F D +R + +S++ + E + G+I + D +
Sbjct: 128 GVLENRDHYGRKILLLFAANWDQSRNSFTDILRAILLSLEVLIEDPELQINGFILIIDWS 187
Query: 114 GVRLGHVLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSL 173
+L+ L LQ+ P R G+H +N I + ++KPF+K
Sbjct: 188 NFSFKQASKLTPSILKLAIEGLQDSFPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKR 247
Query: 174 VHFHPEGDISSVYEFVPPKCIPGGDLKGDLP 204
+ H +++S+++ + P+ +P + G LP
Sbjct: 248 IFLH-GNNLNSLHQLIHPEFLP-SEFGGTLP 276
>sp|Q9UDX3|S14L4_HUMAN SEC14-like protein 4 OS=Homo sapiens GN=SEC14L4 PE=2 SV=1
Length = 406
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 83/206 (40%), Gaps = 25/206 (12%)
Query: 12 FDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEF---GAIAPKTPQGYQVI 68
FDL+ S+ + + EF ++D++ +V++ G + +G V
Sbjct: 47 FDLQKSEDMLRRHM-------EFRKQQDLDNIVTWQPPEVIQLYDSGGLCGYDYEGCPVY 99
Query: 69 FHRLQQFEPSKYVF----QDSVRLLAMSIDACLH--------VEGTVPGYIFLFDMAGVR 116
F+ + +P + QD +R + LH + + + +FDM G+
Sbjct: 100 FNIIGSLDPKGLLLSASKQDMIRKRIKVCELLLHECELQTQKLGRKIEMALMVFDMEGLS 159
Query: 117 LGHVLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHF 176
L H+ + +V +FF L+ P LK + ++ L +VK FM ++ +
Sbjct: 160 LKHLWKPAVEVYQQFFSILEANYPETLKNLIVIRAPKLFPVAFNLVKSFMSEETRRKIVI 219
Query: 177 HPEGDISSVYEFVPPKCIP---GGDL 199
+ + +F+ P +P GG +
Sbjct: 220 LGDNWKQELTKFISPDQLPVEFGGTM 245
>sp|P14078|POL_HTL1C Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 1 (isolate
Caribbea HS-35 subtype A) GN=gag-pro-pol PE=3 SV=3
Length = 1462
Score = 34.7 bits (78), Expect = 0.64, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 53 EFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH 98
E AP +PQ Q I +QQF+P+ QD ++ L S+ A LH
Sbjct: 156 EVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLH 201
>sp|P03362|POL_HTL1A Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 1 (strain
Japan ATK-1 subtype A) GN=gag-pro-pol PE=1 SV=3
Length = 1462
Score = 34.7 bits (78), Expect = 0.65, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 53 EFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH 98
E AP +PQ Q I +QQF+P+ QD ++ L S+ A LH
Sbjct: 156 EVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLH 201
>sp|P0C211|POL_HTL1L Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 1 (isolate
Melanesia mel5 subtype C) GN=gag-pro-pol PE=3 SV=2
Length = 1462
Score = 34.7 bits (78), Expect = 0.68, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 53 EFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH 98
E AP +PQ Q I +QQF+P+ QD ++ L S+ A LH
Sbjct: 156 EVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLH 201
>sp|Q8R0F9|S14L4_MOUSE SEC14-like protein 4 OS=Mus musculus GN=Sec14l4 PE=2 SV=1
Length = 403
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 79/198 (39%), Gaps = 20/198 (10%)
Query: 12 FDLEASKSCIE--VYFTTRTNTPEFFSKRDINRPELLAQSKVVEFGAIAPKTPQGYQVIF 69
FDL+ S+ + V F + N + + PE++ ++ + G ++ +G V F
Sbjct: 47 FDLKKSEDMLRKHVEFRNQQNLDQILT---WQAPEVI---QLYDSGGLSGYDYEGCPVWF 100
Query: 70 HRLQQFEPSKYVF----QDSVRLLAMSIDACLH--------VEGTVPGYIFLFDMAGVRL 117
+ +P QD +R + LH + + + +FDM G+ L
Sbjct: 101 DIIGTMDPKGLFMSASKQDMIRKRIKVCEMLLHECELQSQKLGRKIERMVMVFDMEGLSL 160
Query: 118 GHVLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFH 177
H+ + +V +FF L+ P +K + I+ L +VK FM ++ +
Sbjct: 161 RHLWKPAVEVYQQFFAILEANYPETVKNLIIIRAPKLFPVAFNLVKSFMGEETQKKIVIL 220
Query: 178 PEGDISSVYEFVPPKCIP 195
+ +FV P +P
Sbjct: 221 GGNWKQELVKFVSPDQLP 238
>sp|P0C210|PRO_HTL1L Gag-Pro polyprotein OS=Human T-cell leukemia virus 1 (isolate
Melanesia mel5 subtype C) GN=gag-pro PE=1 SV=2
Length = 651
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 53 EFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH 98
E AP +PQ Q I +QQF+P+ QD ++ L S+ A LH
Sbjct: 156 EVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLH 201
>sp|P14074|PRO_HTL1C Gag-Pro polyprotein OS=Human T-cell leukemia virus 1 (isolate
Caribbea HS-35 subtype A) GN=gag-pro PE=3 SV=3
Length = 651
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 53 EFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH 98
E AP +PQ Q I +QQF+P+ QD ++ L S+ A LH
Sbjct: 156 EVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLH 201
>sp|P10274|PRO_HTL1A Gag-Pro polyprotein OS=Human T-cell leukemia virus 1 (strain Japan
ATK-1 subtype A) GN=gag-pro PE=1 SV=3
Length = 651
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 53 EFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH 98
E AP +PQ Q I +QQF+P+ QD ++ L S+ A LH
Sbjct: 156 EVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLH 201
>sp|P0C209|GAG_HTL1L Gag polyprotein OS=Human T-cell leukemia virus 1 (isolate Melanesia
mel5 subtype C) GN=gag PE=3 SV=2
Length = 429
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 53 EFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH 98
E AP +PQ Q I +QQF+P+ QD ++ L S+ A LH
Sbjct: 156 EVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLH 201
>sp|P14077|GAG_HTL1M Gag polyprotein OS=Human T-cell leukemia virus 1 (strain Japan MT-2
subtype A) GN=gag PE=1 SV=3
Length = 429
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 53 EFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH 98
E AP +PQ Q I +QQF+P+ QD ++ L S+ A LH
Sbjct: 156 EVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLH 201
>sp|Q0R5R2|POL_HTL32 Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 3 (strain
2026ND) GN=gag-pro-pol PE=3 SV=3
Length = 1440
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 53 EFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH 98
E + AP +PQ Q I +QQF+P+ D ++ L S+ A LH
Sbjct: 149 EVSSSAPGSPQFMQTIRLAVQQFDPTAKDLHDLLQYLCSSLVASLH 194
>sp|P14076|GAG_HTL1C Gag polyprotein OS=Human T-cell leukemia virus 1 (isolate Caribbea
HS-35 subtype A) GN=gag PE=3 SV=3
Length = 429
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 53 EFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH 98
E AP +PQ Q I +QQF+P+ QD ++ L S+ A LH
Sbjct: 156 EVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLH 201
>sp|P03345|GAG_HTL1A Gag polyprotein OS=Human T-cell leukemia virus 1 (strain Japan
ATK-1 subtype A) GN=gag PE=1 SV=3
Length = 429
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 53 EFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH 98
E AP +PQ Q I +QQF+P+ QD ++ L S+ A LH
Sbjct: 156 EVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLH 201
>sp|Q9UDX4|S14L3_HUMAN SEC14-like protein 3 OS=Homo sapiens GN=SEC14L3 PE=2 SV=1
Length = 400
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 16/170 (9%)
Query: 12 FDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEFGAIAPKTPQGYQVIFHR 71
FDL+ S++ + Y R T + D PE++ + G + G V +
Sbjct: 47 FDLQKSEALLRKYMEFR-KTMDIDHILDWQPPEVIQKYMP---GGLCGYDRDGCPVWYDI 102
Query: 72 LQQFEPSKYVF----QDSVRLLAMSIDACLH--------VEGTVPGYIFLFDMAGVRLGH 119
+ +P +F QD ++ + LH + + + +FD G+ L H
Sbjct: 103 IGPLDPKGLLFSVTKQDLLKTKMRDCERILHECDLQTERLGKKIETIVMIFDCEGLGLKH 162
Query: 120 VLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKD 169
+ V +FF L+E P LK + I+ L ++KPF+ +D
Sbjct: 163 FWKPLVEVYQEFFGLLEENYPETLKFMLIVKATKLFPVGYNLMKPFLSED 212
>sp|Q4U0X6|POL_HTL3P Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 3 (strain
Pyl43) GN=gag-pro-pol PE=3 SV=4
Length = 1440
Score = 32.7 bits (73), Expect = 3.0, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 53 EFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH 98
E + AP +PQ Q + +QQF+P+ D ++ L S+ A LH
Sbjct: 149 EVSSSAPGSPQFMQTVRLAVQQFDPTAKDLHDLLQYLCSSLVASLH 194
>sp|Q9Z1J8|S14L3_RAT SEC14-like protein 3 OS=Rattus norvegicus GN=Sec14l3 PE=1 SV=1
Length = 400
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 16/170 (9%)
Query: 12 FDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEFGAIAPKTPQGYQVIFHR 71
FDL+ S++ + Y R T + D PE++ + G + G V +
Sbjct: 47 FDLQKSEAMLRKYMEFR-KTMDIDHILDWQPPEVIQKYMP---GGLCGYDRDGCPVWYDI 102
Query: 72 LQQFEPSKYVF----QDSVRLLAMSIDACLH--------VEGTVPGYIFLFDMAGVRLGH 119
+ +P +F QD ++ + LH + + + +FD G+ L H
Sbjct: 103 IGPLDPKGLLFSVTKQDLLKTKMRDCERILHECDLQTERLGRKIETIVMIFDCEGLGLKH 162
Query: 120 VLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKD 169
+ V +FF L+E P LK + I+ L ++KPF+ +D
Sbjct: 163 FWKPLVEVYQEFFGLLEENYPETLKFMLIVKATKLFPVGYNLMKPFLSED 212
>sp|Q0R5R3|PRO_HTL32 Gag-Pro polyprotein OS=Human T-cell leukemia virus 3 (strain
2026ND) GN=gag-pro PE=3 SV=3
Length = 584
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 53 EFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH 98
E + AP +PQ Q I +QQF+P+ D ++ L S+ A LH
Sbjct: 149 EVSSSAPGSPQFMQTIRLAVQQFDPTAKDLHDLLQYLCSSLVASLH 194
>sp|Q0R5R4|GAG_HTL32 Gag polyprotein OS=Human T-cell leukemia virus 3 (strain 2026ND)
GN=gag PE=3 SV=3
Length = 422
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 53 EFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH 98
E + AP +PQ Q I +QQF+P+ D ++ L S+ A LH
Sbjct: 149 EVSSSAPGSPQFMQTIRLAVQQFDPTAKDLHDLLQYLCSSLVASLH 194
>sp|Q09SZ9|PRO_HTL3P Gag-Pro polyprotein OS=Human T-cell leukemia virus 3 (strain Pyl43)
GN=gag-pro PE=3 SV=3
Length = 584
Score = 31.2 bits (69), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 53 EFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH 98
E + AP +PQ Q + +QQF+P+ D ++ L S+ A LH
Sbjct: 149 EVSSSAPGSPQFMQTVRLAVQQFDPTAKDLHDLLQYLCSSLVASLH 194
>sp|Q09T00|GAG_HTL3P Gag polyprotein OS=Human T-cell leukemia virus 3 (strain Pyl43)
GN=gag PE=3 SV=3
Length = 422
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 53 EFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH 98
E + AP +PQ Q + +QQF+P+ D ++ L S+ A LH
Sbjct: 149 EVSSSAPGSPQFMQTVRLAVQQFDPTAKDLHDLLQYLCSSLVASLH 194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,875,006
Number of Sequences: 539616
Number of extensions: 3987269
Number of successful extensions: 9570
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9527
Number of HSP's gapped (non-prelim): 44
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)