Query psy4447
Match_columns 261
No_of_seqs 198 out of 1374
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 17:15:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4447.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4447hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r5l_A Alpha-TTP, protein (alp 100.0 8.3E-54 2.8E-58 367.5 20.6 223 2-229 35-259 (262)
2 3hx3_A Retinaldehyde-binding p 100.0 1.1E-50 3.6E-55 357.1 18.2 211 2-219 94-306 (316)
3 1aua_A Phosphatidylinositol tr 100.0 3.8E-45 1.3E-49 319.2 15.6 200 2-207 54-269 (296)
4 1olm_A SEC14-like protein 2; l 100.0 4.7E-44 1.6E-48 324.8 16.5 198 2-206 37-248 (403)
5 3q8g_A CRAL-TRIO domain-contai 100.0 1.6E-44 5.4E-49 318.0 10.9 202 2-206 63-283 (320)
6 3pg7_A Neurofibromin; SEC lipi 99.3 1.7E-12 5.9E-17 110.1 6.9 137 50-196 9-146 (256)
7 3peg_A Neurofibromin; SEC14 do 99.1 1E-10 3.6E-15 100.6 7.3 127 59-194 36-163 (290)
8 1q02_A Sequestosome 1; helical 60.7 9 0.00031 23.3 3.1 22 1-22 27-48 (52)
9 1z96_A DNA-damage, UBA-domain 60.3 7.4 0.00025 21.8 2.7 18 4-21 22-39 (40)
10 2q3l_A Uncharacterized protein 51.9 37 0.0013 24.4 6.0 79 80-169 30-111 (126)
11 2dna_A Unnamed protein product 50.0 15 0.0005 23.8 3.0 20 4-23 38-57 (67)
12 2bwb_A Ubiquitin-like protein 48.3 12 0.00041 22.1 2.3 19 4-22 26-44 (46)
13 2dah_A Ubiquilin-3; UBA domain 47.7 15 0.00052 22.5 2.8 21 4-24 28-48 (54)
14 1wgl_A TOLL-interacting protei 46.7 12 0.0004 23.5 2.2 22 2-23 27-48 (59)
15 1ify_A HHR23A, UV excision rep 46.4 8.6 0.0003 23.0 1.5 19 4-22 26-44 (49)
16 3sbx_A Putative uncharacterize 44.4 27 0.00093 27.4 4.5 63 125-191 122-189 (189)
17 1v92_A NSFL1 cofactor P47; 3-h 43.9 13 0.00045 21.5 2.0 18 4-21 24-41 (46)
18 1otr_A Protein CUE2; protein-p 43.4 18 0.00061 21.8 2.5 21 3-23 23-43 (49)
19 2knz_A Ubiquilin-4; cytoplasm, 43.1 18 0.00062 21.9 2.6 20 4-23 30-49 (53)
20 1wr1_B Ubiquitin-like protein 42.4 19 0.00063 22.5 2.6 20 4-23 36-55 (58)
21 2g3q_A Protein YBL047C; endocy 41.0 14 0.00048 21.2 1.8 18 4-21 22-39 (43)
22 1wji_A Tudor domain containing 40.9 21 0.00073 22.6 2.7 21 4-24 27-47 (63)
23 1vej_A Riken cDNA 4931431F19; 38.6 23 0.00078 23.3 2.7 21 3-23 47-67 (74)
24 2dal_A Protein KIAA0794; FAS a 37.5 24 0.00083 22.1 2.6 18 4-21 34-51 (62)
25 3qua_A Putative uncharacterize 36.9 43 0.0015 26.4 4.6 63 125-191 131-198 (199)
26 2di0_A Activating signal coint 36.6 31 0.0011 22.5 3.0 23 1-23 30-52 (71)
27 2oo3_A Protein involved in cat 35.2 22 0.00075 29.8 2.7 33 139-171 233-265 (283)
28 2jy5_A Ubiquilin-1; UBA, alter 35.2 25 0.00084 21.2 2.3 18 4-21 31-48 (52)
29 1vg5_A RSGI RUH-014, rhomboid 33.1 21 0.00071 23.4 1.8 19 4-22 47-65 (73)
30 3e21_A HFAF1, FAS-associated f 33.0 24 0.00083 20.7 1.9 16 4-19 25-40 (45)
31 2dam_A ETEA protein; KIAA0887, 32.2 27 0.00094 22.3 2.2 18 4-21 38-55 (67)
32 2dhy_A CUE domain-containing p 31.5 33 0.0011 22.1 2.5 23 2-24 36-58 (67)
33 1oai_A Nuclear RNA export fact 31.4 50 0.0017 20.5 3.3 25 2-26 24-48 (59)
34 2cp8_A NEXT to BRCA1 gene 1 pr 31.4 44 0.0015 20.5 2.9 20 4-23 28-47 (54)
35 2dak_A Ubiquitin carboxyl-term 29.2 36 0.0012 21.3 2.4 21 4-24 27-47 (63)
36 1wiv_A UBP14, ubiquitin-specif 29.0 30 0.001 22.5 2.0 19 4-22 47-65 (73)
37 1veg_A NEDD8 ultimate buster-1 28.8 42 0.0014 22.5 2.8 22 3-24 46-67 (83)
38 2dzl_A Protein FAM100B; UBA-li 28.7 42 0.0014 21.4 2.6 18 4-21 36-53 (66)
39 1sbo_A Putative anti-sigma fac 26.1 1.2E+02 0.0041 20.1 5.1 51 107-163 46-96 (110)
40 2cp9_A EF-TS, EF-TSMT, elongat 26.1 39 0.0013 21.5 2.1 19 6-24 30-48 (64)
41 2jp7_A MRNA export factor MEX6 23.9 46 0.0016 20.6 2.1 22 2-23 23-44 (57)
42 2ka5_A Putative anti-sigma fac 23.6 1.3E+02 0.0045 21.0 5.0 52 106-163 53-104 (125)
43 2a33_A Hypothetical protein; s 23.5 99 0.0034 24.5 4.6 62 125-190 123-189 (215)
44 3kdg_A DNA mismatch repair pro 22.5 1.2E+02 0.0041 23.5 4.9 31 39-70 152-183 (197)
45 3mvn_A UDP-N-acetylmuramate:L- 21.5 1.3E+02 0.0043 22.4 4.7 39 103-152 34-72 (163)
46 3ct6_A PTS-dependent dihydroxy 21.3 1.5E+02 0.005 21.5 4.8 42 104-161 59-100 (131)
47 3e7l_A Transcriptional regulat 21.2 63 0.0022 19.8 2.4 20 2-21 23-42 (63)
48 1umq_A Photosynthetic apparatu 21.2 60 0.0021 21.5 2.4 20 2-21 45-64 (81)
49 1wgn_A UBAP1, ubiquitin associ 20.1 77 0.0026 20.0 2.5 21 3-23 36-56 (63)
50 1hp8_A HU-P8; leukemia, cystei 20.0 1.7E+02 0.0058 18.7 4.2 30 3-32 14-43 (68)
No 1
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=8.3e-54 Score=367.48 Aligned_cols=223 Identities=17% Similarity=0.389 Sum_probs=207.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhhCCccccCCCCCcHHHHHHhhhccccccCC-CCCCCCEEEEEecCCCCCCCC
Q psy4447 2 TLILIHHSCYFDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEFGAIAP-KTPQGYQVIFHRLQQFEPSKY 80 (261)
Q Consensus 2 ~L~rFLra~~~dv~~A~~~l~~~~~~R~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~-~D~~G~~V~~~~~~~~d~~~~ 80 (261)
+|+||||||+||+++|.++|++|++||+++|+++.+.++ +++.+.++.|++. +++ +|++||||+++++|++|++.+
T Consensus 35 ~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~~--~~~~~~~~~g~~~-~l~g~D~~GrpV~i~~~~~~d~~~~ 111 (262)
T 1r5l_A 35 FLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHP--RSIIGLLKAGYHG-VLRSRDPTGSKVLIYRIAHWDPKVF 111 (262)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCCG--GGTHHHHHTTCEE-ECSSCCTTCCEEEEEEGGGCCTTTS
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCCh--HHHHHHHHcCCcc-CCCCcCCCCCEEEEEeccccCcccC
Confidence 799999999999999999999999999999887776655 4577888899887 777 999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhccCC-CcCcEEEEEeCCCCCcccccccCHHHHHHHHHHhhccccceeeeeEEEeCchHHHHHH
Q psy4447 81 VFQDSVRLLAMSIDACLHVEG-TVPGYIFLFDMAGVRLGHVLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIM 159 (261)
Q Consensus 81 ~~~~~~r~~~~~~e~~~~~~~-~~~g~v~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~f~~~~ 159 (261)
+..+++|+.++++|.++.+++ ++.|+++|+|++|+|++|+.+++++.+|.++.++|++||+|++++||||+|++|+++|
T Consensus 112 ~~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~ 191 (262)
T 1r5l_A 112 TAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVF 191 (262)
T ss_dssp CHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHH
Confidence 999999999999999887654 4789999999999999999888899999999999999999999999999999999999
Q ss_pred HHhhhcchHHhhcceeeCCCCChhhhhhhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhHHHHHhhcc
Q psy4447 160 FVVKPFMKKDLLSLVHFHPEGDISSVYEFVPPKCIPGGDLKGDLPDSKTLHNEYVEWMKNLVEFFLQDEK 229 (261)
Q Consensus 160 ~~vk~fl~~~~~~ki~~~~~~~~~~L~~~i~~~~LP~~~yGG~~~~~~~~~~~w~~~l~~~~~~~~~~~~ 229 (261)
+++||||+++|++||+|+++++.++|.++|| ++||+ +|||++++++++++.|.+.+.++++||.+.+.
T Consensus 192 ~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~-~yGG~~~~~~~~~~~w~~~l~~~~~~~~~~~~ 259 (262)
T 1r5l_A 192 SMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPL-EYGGEEFSMEDICQEWTNFIMKSEDYLSSISE 259 (262)
T ss_dssp HHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCG-GGTCSSCCHHHHHHHHHHHHHHTHHHHHHTCC
T ss_pred HHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcH-hhCCCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999997666799999999 99999 99999999999999999999999999998653
No 2
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=1.1e-50 Score=357.12 Aligned_cols=211 Identities=19% Similarity=0.360 Sum_probs=195.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhhCCccccCCCCCcHHHHHHhhhccccccCC-CCCCCCEEEEEecCCCCCCCC
Q psy4447 2 TLILIHHSCYFDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEFGAIAP-KTPQGYQVIFHRLQQFEPSKY 80 (261)
Q Consensus 2 ~L~rFLra~~~dv~~A~~~l~~~~~~R~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~-~D~~G~~V~~~~~~~~d~~~~ 80 (261)
+|+||||||+||+++|.++|++|++||+++|++|.+.++ +++++.++.|++. +++ +|++||||+++++|++|++++
T Consensus 94 ~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~~~~~~~~--~~i~~~l~~g~~~-~l~g~Dk~GrpVii~r~g~~d~~~~ 170 (316)
T 3hx3_A 94 FFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSP--EAVRCTIEAGYPG-VLSSRDKYGRVVMLFNIENWQSQEI 170 (316)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGGGTTTCCH--HHHHHHHHTTSSE-ECSSCCTTSCEEEEEECTTCCTTTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCchhhcCCCH--HHHHHHHHcCCcc-ccCCCCCCCCEEEEEecccCCCCCC
Confidence 799999999999999999999999999999988877654 6788889999988 886 999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhccCC-CcCcEEEEEeCCCCCcccccccCHHHHHHHHHHhhccccceeeeeEEEeCchHHHHHH
Q psy4447 81 VFQDSVRLLAMSIDACLHVEG-TVPGYIFLFDMAGVRLGHVLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIM 159 (261)
Q Consensus 81 ~~~~~~r~~~~~~e~~~~~~~-~~~g~v~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~f~~~~ 159 (261)
+.++++|++++++|.++.+++ ++.|+++|+|++|+|++|+++++++.+|+++.++|++||+|++++||||+|++|+++|
T Consensus 171 ~~~~~~r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~ 250 (316)
T 3hx3_A 171 TFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTY 250 (316)
T ss_dssp CHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHH
Confidence 999999999999999887544 5899999999999999999888999999999999999999999999999999999999
Q ss_pred HHhhhcchHHhhcceeeCCCCChhhhhhhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q psy4447 160 FVVKPFMKKDLLSLVHFHPEGDISSVYEFVPPKCIPGGDLKGDLPDSKTLHNEYVEWMKN 219 (261)
Q Consensus 160 ~~vk~fl~~~~~~ki~~~~~~~~~~L~~~i~~~~LP~~~yGG~~~~~~~~~~~w~~~l~~ 219 (261)
+++||||+++|++||+|++++ .++|.++||+++||+ +|||++++.+ ++.|.+.+..
T Consensus 251 ~ivkpfl~~kt~~KI~~~~~~-~~~L~~~I~~~~LP~-eyGG~~~~~d--~~~~~~~l~~ 306 (316)
T 3hx3_A 251 NVVKPFLKSKLLERVFVHGDD-LSGFYQEIDENILPS-DFGGTLPKYD--GKAVAEQLFG 306 (316)
T ss_dssp HHHGGGCCHHHHTTEEEEETC-CHHHHHHSCGGGSBG-GGTSSBCCCC--HHHHHHHHC-
T ss_pred HHHHHhCCHHhhhheEEeCCC-HHHHHhhCCHhhCcH-hhCCCCCCcC--hhHHHHHHcC
Confidence 999999999999999999643 689999999999999 9999998666 6888887754
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=3.8e-45 Score=319.18 Aligned_cols=200 Identities=14% Similarity=0.168 Sum_probs=172.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhhC--CccccCCCCCcHHHHHHhhhccccccCC-CCCCCCEEEEEecCCCCCC
Q psy4447 2 TLILIHHSCYFDLEASKSCIEVYFTTRTNT--PEFFSKRDINRPELLAQSKVVEFGAIAP-KTPQGYQVIFHRLQQFEPS 78 (261)
Q Consensus 2 ~L~rFLra~~~dv~~A~~~l~~~~~~R~~~--~~~~~~~~~~~~~~~~~l~~g~~~~~l~-~D~~G~~V~~~~~~~~d~~ 78 (261)
+|+||||||+||+++|.++|++|++||+++ ++++.+.++... +.+...+.. +++ +|++||||+++++|++|++
T Consensus 54 ~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~---~~~~~~~~~-~~~g~Dk~GrpV~i~~~g~~d~~ 129 (296)
T 1aua_A 54 TLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEK---PLIAKFYPQ-YYHKTDKDGRPVYFEELGAVNLH 129 (296)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTH---HHHGGGSCC-EEEEECTTSCEEEEECGGGCCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcH---HHHHHhCCc-eecccCCCCCEEEEEeeccCChH
Confidence 799999999999999999999999999998 677766554221 222333333 344 9999999999999999875
Q ss_pred C----CCHHHHHHHHHHHHHHHhcc--------CC-CcCcEEEEEeCCCCCcccccccCHHHHHHHHHHhhccccceeee
Q psy4447 79 K----YVFQDSVRLLAMSIDACLHV--------EG-TVPGYIFLFDMAGVRLGHVLRLSVGQLSKFFLYLQEGLPVRLKG 145 (261)
Q Consensus 79 ~----~~~~~~~r~~~~~~e~~~~~--------~~-~~~g~v~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yP~rl~~ 145 (261)
+ .+.+++++++++.+|.++.. .+ +++++++|+|++|+|++|+.++ ++.+|.++.++|++||+|+++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~-~~~~k~~~~~~q~~YPerl~~ 208 (296)
T 1aua_A 130 EMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSV-MSYVREASYISQNYYPERMGK 208 (296)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHH-HHHHHHHHHHHHHHSTTCEEE
T ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHHH-HHHHHHHHHHHHHhHHHhhCe
Confidence 4 58899999999999987542 22 4889999999999999998765 788999999999999999999
Q ss_pred eEEEeCchHHHHHHHHhhhcchHHhhcceeeCCCCChhhhhhhcCCCCCCCCCCCCCCCChH
Q psy4447 146 IHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVYEFVPPKCIPGGDLKGDLPDSK 207 (261)
Q Consensus 146 i~iiN~P~~f~~~~~~vk~fl~~~~~~ki~~~~~~~~~~L~~~i~~~~LP~~~yGG~~~~~~ 207 (261)
+||||+|++|+++|+++||||+++|++||+|+++++.++|.++||+++||+ +|||+++..+
T Consensus 209 i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~-~yGG~~~~~~ 269 (296)
T 1aua_A 209 FYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPV-KFGGKSEVDE 269 (296)
T ss_dssp EEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSBG-GGTSCBCCCG
T ss_pred EEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhCcH-HhCCCCCCCC
Confidence 999999999999999999999999999999997666789999999999999 9999996543
No 4
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=4.7e-44 Score=324.79 Aligned_cols=198 Identities=17% Similarity=0.245 Sum_probs=174.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhhC--CccccCCCCCcHHHHHHhhhccccccCCCCCCCCEEEEEecCCCCCC-
Q psy4447 2 TLILIHHSCYFDLEASKSCIEVYFTTRTNT--PEFFSKRDINRPELLAQSKVVEFGAIAPKTPQGYQVIFHRLQQFEPS- 78 (261)
Q Consensus 2 ~L~rFLra~~~dv~~A~~~l~~~~~~R~~~--~~~~~~~~~~~~~~~~~l~~g~~~~~l~~D~~G~~V~~~~~~~~d~~- 78 (261)
+|+||||||+||+++|.++|+++++||+++ ++++... ..+.+++.+..|.. |+|++||||+++++|++|++
T Consensus 37 ~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~--~~~~~~~~~~~~~~----g~Dk~GrpV~~~~~g~~d~~~ 110 (403)
T 1olm_A 37 FLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQ--PPEVIQQYLSGGMC----GYDLDGCPVWYDIIGPLDAKG 110 (403)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGSC--CCHHHHHHCCBEEE----EECTTSCEEEEEECTTCCHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccC--CHHHHHHhCCceee----ccCCCcCEEEEEecCCCChHH
Confidence 799999999999999999999999999998 3555522 22456666554433 38999999999999999987
Q ss_pred ---CCCHHHHHHHHHHHHHHHhccC-------C-CcCcEEEEEeCCCCCcccccccCHHHHHHHHHHhhccccceeeeeE
Q psy4447 79 ---KYVFQDSVRLLAMSIDACLHVE-------G-TVPGYIFLFDMAGVRLGHVLRLSVGQLSKFFLYLQEGLPVRLKGIH 147 (261)
Q Consensus 79 ---~~~~~~~~r~~~~~~e~~~~~~-------~-~~~g~v~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yP~rl~~i~ 147 (261)
..+.++++|++++++|.++++. + .+.|+++|+|++|+|++|+++..++.+|.++.++|++||+|++++|
T Consensus 111 l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~ 190 (403)
T 1olm_A 111 LLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLF 190 (403)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEE
Confidence 4799999999999999987642 2 3789999999999999998766678899999999999999999999
Q ss_pred EEeCchHHHHHHHHhhhcchHHhhcceeeCCCCChhhhhhhcCCCCCCCCCCCCCCCCh
Q psy4447 148 ILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVYEFVPPKCIPGGDLKGDLPDS 206 (261)
Q Consensus 148 iiN~P~~f~~~~~~vk~fl~~~~~~ki~~~~~~~~~~L~~~i~~~~LP~~~yGG~~~~~ 206 (261)
|||+|++|+++|+++||||+++|++||+|+++++.++|.++||+++||+ +|||+++..
T Consensus 191 iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~LP~-~yGG~~~~~ 248 (403)
T 1olm_A 191 VVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPV-EYGGTMTDP 248 (403)
T ss_dssp EESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSBG-GGTSSBCCT
T ss_pred EEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhCch-hhCCCcCCC
Confidence 9999999999999999999999999999997666689999999999999 999998653
No 5
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=1.6e-44 Score=317.98 Aligned_cols=202 Identities=16% Similarity=0.166 Sum_probs=169.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhhCC--ccccCCCCCc----HHHHHHhhhccccccCCCCCCCCEEEEEecCCC
Q psy4447 2 TLILIHHSCYFDLEASKSCIEVYFTTRTNTP--EFFSKRDINR----PELLAQSKVVEFGAIAPKTPQGYQVIFHRLQQF 75 (261)
Q Consensus 2 ~L~rFLra~~~dv~~A~~~l~~~~~~R~~~~--~~~~~~~~~~----~~~~~~l~~g~~~~~l~~D~~G~~V~~~~~~~~ 75 (261)
+|+||||||+|||++|.++|+++++||++++ +++.+.++.. ++...+.+.+..+ +.|+|++||||+++++|++
T Consensus 63 ~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e~~~~~~~~~~~-~~g~Dk~GRpV~i~r~g~~ 141 (320)
T 3q8g_A 63 TLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQY-YHHVDKDGRPLYFAELGGI 141 (320)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHHHHHHHHTTSCEE-EEEECTTCCEEEEEECTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchhHHHHHHHhCCce-ecCCCCCcCEEEEEecccc
Confidence 7999999999999999999999999999986 4544332210 0122233333333 3349999999999999999
Q ss_pred CCCC----CCHHHHHHHHHHHHHHHhcc--------CC-CcCcEEEEEeCCCCCcccccccCHHHHHHHHHHhhccccce
Q psy4447 76 EPSK----YVFQDSVRLLAMSIDACLHV--------EG-TVPGYIFLFDMAGVRLGHVLRLSVGQLSKFFLYLQEGLPVR 142 (261)
Q Consensus 76 d~~~----~~~~~~~r~~~~~~e~~~~~--------~~-~~~g~v~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yP~r 142 (261)
|+++ .+.+++++++++.+|.++.. .+ .++++++|+|++|+|++|+.++ ++.+|.++.++|++||+|
T Consensus 142 d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~-~~~~k~~~~~lq~~YPer 220 (320)
T 3q8g_A 142 NLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHV-LSYIKDVADISQNYYPER 220 (320)
T ss_dssp CHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHT-HHHHHHHHHHHHHHSTTC
T ss_pred CHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHH-HHHHHHHHHHHHhhCchh
Confidence 9875 37889999999999987531 22 2788999999999999998764 788999999999999999
Q ss_pred eeeeEEEeCchHHHHHHHHhhhcchHHhhcceeeCCCCChhhhhhhcCCCCCCCCCCCCCCCCh
Q psy4447 143 LKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVYEFVPPKCIPGGDLKGDLPDS 206 (261)
Q Consensus 143 l~~i~iiN~P~~f~~~~~~vk~fl~~~~~~ki~~~~~~~~~~L~~~i~~~~LP~~~yGG~~~~~ 206 (261)
++++||||+|++|+++|+++||||+++|++||+|+++++.++|.++||+++||+ +|||+++..
T Consensus 221 l~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~-~yGG~~~~~ 283 (320)
T 3q8g_A 221 MGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPV-KYGGTSVLH 283 (320)
T ss_dssp EEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSCGGGSBG-GGTSCBCCS
T ss_pred hceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCChhhCCh-hhCCCCCCC
Confidence 999999999999999999999999999999999998666789999999999999 999999643
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.32 E-value=1.7e-12 Score=110.05 Aligned_cols=137 Identities=10% Similarity=0.070 Sum_probs=109.8
Q ss_pred hhccccccCCCCCCCCEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHhccCCCcCcEEEEEeCCCCCcccccccCHHHHH
Q psy4447 50 KVVEFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLHVEGTVPGYIFLFDMAGVRLGHVLRLSVGQLS 129 (261)
Q Consensus 50 ~~g~~~~~l~~D~~G~~V~~~~~~~~d~~~~~~~~~~r~~~~~~e~~~~~~~~~~g~v~I~D~~g~s~~~~~~~~~~~~k 129 (261)
+.+.++ .-|.|++|+||+++.+.++++...+.+.++.+++.+++... -..+.+|+|++|++..+. .+.+.++
T Consensus 9 ~~~ify-~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~~-----~~~y~lV~d~T~~~~~n~--p~~~wl~ 80 (256)
T 3pg7_A 9 TLSIFY-QAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY-----AKPYEIVVDLTHTGPSNR--FKTDFLS 80 (256)
T ss_dssp HHTSEE-EEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT-----TSCEEEEEECTTCCGGGC--CCHHHHH
T ss_pred HcCCEE-EcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEECCCCCcccC--CcHHHHH
Confidence 344554 44589999999999999998877777766666655555332 257999999999998754 4667899
Q ss_pred HHHHHhhccccceeeeeEEEeCchHHHHHHHHh-hhcchHHhhcceeeCCCCChhhhhhhcCCCCCCC
Q psy4447 130 KFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVV-KPFMKKDLLSLVHFHPEGDISSVYEFVPPKCIPG 196 (261)
Q Consensus 130 ~~~~~~q~~yP~rl~~i~iiN~P~~f~~~~~~v-k~fl~~~~~~ki~~~~~~~~~~L~~~i~~~~LP~ 196 (261)
.+..++...|...++++||+|++++|...+..+ ++|.+.+..+|++++++ .++|.++|+.++|.-
T Consensus 81 ~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L~L 146 (256)
T 3pg7_A 81 KWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQKL 146 (256)
T ss_dssp HTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGCCC
T ss_pred HHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC--HHHHHhhcCHHHcCC
Confidence 999999999999999999999999999776654 66666688889999987 899999998887754
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.11 E-value=1e-10 Score=100.57 Aligned_cols=127 Identities=9% Similarity=0.104 Sum_probs=96.2
Q ss_pred CCCCCCCEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHhccCCCcCcEEEEEeCCCCCcccccccCHHHHHHHHHHhhcc
Q psy4447 59 PKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLHVEGTVPGYIFLFDMAGVRLGHVLRLSVGQLSKFFLYLQEG 138 (261)
Q Consensus 59 ~~D~~G~~V~~~~~~~~d~~~~~~~~~~r~~~~~~e~~~~~~~~~~g~v~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~ 138 (261)
|.|++|+||+++.+++++....+.+.++-+++.+++... -..+++|+|++|++..+- .+.+.++.+..++...
T Consensus 36 g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl~~~~-----~~~y~lV~D~T~~~~~n~--p~~~~l~~~~~llp~~ 108 (290)
T 3peg_A 36 GTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY-----AKPYEIVVDLTHTGPSNR--FKTDFLSKWFVVFPGF 108 (290)
T ss_dssp EECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT-----TSCEEEEEECTTCCGGGC--CCHHHHGGGGTSSCHH
T ss_pred ccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHHHHHhc-----CCCeEEEEEcCCCCccCC--ChHHHHHHHHHHCCHH
Confidence 489999999999999999877777766666555554322 257999999999998653 4677899999999999
Q ss_pred ccceeeeeEEEeCchHHHHHH-HHhhhcchHHhhcceeeCCCCChhhhhhhcCCCCC
Q psy4447 139 LPVRLKGIHILNTRPLIDKIM-FVVKPFMKKDLLSLVHFHPEGDISSVYEFVPPKCI 194 (261)
Q Consensus 139 yP~rl~~i~iiN~P~~f~~~~-~~vk~fl~~~~~~ki~~~~~~~~~~L~~~i~~~~L 194 (261)
|+..++++|++|+|.+|...+ ...+++.+.+..+|+.++++ ...|..+++++++
T Consensus 109 ~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~--~~~L~~~i~~~~~ 163 (290)
T 3peg_A 109 AYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 163 (290)
T ss_dssp HHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS--SCC----------
T ss_pred HHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC--HHHHHhhCCHHHh
Confidence 999999999999999999855 46688888888899998876 6668899887744
No 8
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=60.75 E-value=9 Score=23.33 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=19.5
Q ss_pred CHHHHHHHhCCCCHHHHHHHHH
Q psy4447 1 ETLILIHHSCYFDLEASKSCIE 22 (261)
Q Consensus 1 ~~L~rFLra~~~dv~~A~~~l~ 22 (261)
.+|-|.|.+.++|+.+|.+.|.
T Consensus 27 GWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 27 GWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp SHHHHHHHHTTTCHHHHHHHHT
T ss_pred cHHHHHHHHccCCHHHHHHHhh
Confidence 3788999999999999998774
No 9
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=60.32 E-value=7.4 Score=21.82 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=13.2
Q ss_pred HHHHHhCCCCHHHHHHHH
Q psy4447 4 ILIHHSCYFDLEASKSCI 21 (261)
Q Consensus 4 ~rFLra~~~dv~~A~~~l 21 (261)
.+-|+++++|++.|...|
T Consensus 22 ~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 22 AQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 466788888888887654
No 10
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=51.90 E-value=37 Score=24.38 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHHHhccCCCcCcEEEEEe---CCCCCcccccccCHHHHHHHHHHhhccccceeeeeEEEeCchHHH
Q psy4447 80 YVFQDSVRLLAMSIDACLHVEGTVPGYIFLFD---MAGVRLGHVLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLID 156 (261)
Q Consensus 80 ~~~~~~~r~~~~~~e~~~~~~~~~~g~v~I~D---~~g~s~~~~~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~f~ 156 (261)
++.+|+.. +.=.++..+.+.+. ..+.+++| +.|+++.- +-.-++.--.|. ..+.++-||-.+.|..
T Consensus 30 lt~~d~~~-l~~~l~~~l~~~~~-~~i~ll~~~~~f~G~~~~a--------~~~d~k~~~~h~-~~~~RiAvV~d~~W~~ 98 (126)
T 2q3l_A 30 LTHEDYEQ-MTPLLESALAGIKT-PEIVALIDITELDGLSLHA--------AWDDLKLGLKHG-KEFKRVAIIGQGELQE 98 (126)
T ss_dssp ECHHHHHH-HHHHHHHHTTTCCS-SCEEEEEEEEEEEEECHHH--------HHHHHHHHHHHG-GGEEEEEEECCSHHHH
T ss_pred ECHHHHHH-HHHHHHHHHHhCCC-ceEEEEEEecCCCCCCHHH--------HHHHHHhhhhHH-hcCCEEEEEcChHHHH
Confidence 56677776 55566666654433 11445554 55555332 222222222333 6789999999999999
Q ss_pred HHHHHhhhcchHH
Q psy4447 157 KIMFVVKPFMKKD 169 (261)
Q Consensus 157 ~~~~~vk~fl~~~ 169 (261)
.+-++.++|++..
T Consensus 99 ~~~~~~~~~~~~e 111 (126)
T 2q3l_A 99 WATRVANWFTPGE 111 (126)
T ss_dssp HHHHHHHHHCSSE
T ss_pred HHHHHHhhccCCc
Confidence 9999999997764
No 11
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=50.05 E-value=15 Score=23.77 Aligned_cols=20 Identities=10% Similarity=-0.115 Sum_probs=17.6
Q ss_pred HHHHHhCCCCHHHHHHHHHH
Q psy4447 4 ILIHHSCYFDLEASKSCIEV 23 (261)
Q Consensus 4 ~rFLra~~~dv~~A~~~l~~ 23 (261)
++=|+++++|+++|.+.|-+
T Consensus 38 ~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 38 LQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHh
Confidence 67899999999999998765
No 12
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=48.34 E-value=12 Score=22.11 Aligned_cols=19 Identities=0% Similarity=-0.092 Sum_probs=15.8
Q ss_pred HHHHHhCCCCHHHHHHHHH
Q psy4447 4 ILIHHSCYFDLEASKSCIE 22 (261)
Q Consensus 4 ~rFLra~~~dv~~A~~~l~ 22 (261)
++=|+++++|+++|.+.|-
T Consensus 26 ~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 26 VAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHH
Confidence 5678999999999988763
No 13
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=47.72 E-value=15 Score=22.49 Aligned_cols=21 Identities=10% Similarity=-0.062 Sum_probs=17.4
Q ss_pred HHHHHhCCCCHHHHHHHHHHH
Q psy4447 4 ILIHHSCYFDLEASKSCIEVY 24 (261)
Q Consensus 4 ~rFLra~~~dv~~A~~~l~~~ 24 (261)
++-|+++++|+++|.+.|-..
T Consensus 28 ~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 28 LQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhC
Confidence 577899999999999887653
No 14
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=46.67 E-value=12 Score=23.49 Aligned_cols=22 Identities=5% Similarity=-0.068 Sum_probs=18.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHH
Q psy4447 2 TLILIHHSCYFDLEASKSCIEV 23 (261)
Q Consensus 2 ~L~rFLra~~~dv~~A~~~l~~ 23 (261)
.+..-|+++++|++.|...|-+
T Consensus 27 ~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 27 VIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHc
Confidence 3567799999999999998854
No 15
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=46.41 E-value=8.6 Score=23.00 Aligned_cols=19 Identities=5% Similarity=0.081 Sum_probs=13.3
Q ss_pred HHHHHhCCCCHHHHHHHHH
Q psy4447 4 ILIHHSCYFDLEASKSCIE 22 (261)
Q Consensus 4 ~rFLra~~~dv~~A~~~l~ 22 (261)
.+=|+++++|+++|.+.|-
T Consensus 26 ~~AL~~~~~n~e~A~e~L~ 44 (49)
T 1ify_A 26 VAALRASYNNPHRAVEYLL 44 (49)
T ss_dssp HHHHHTTTSCSHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHH
Confidence 3457778888888877654
No 16
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=44.43 E-value=27 Score=27.35 Aligned_cols=63 Identities=11% Similarity=0.162 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhccccceeeeeEEEeCchHHHHHHHHhh-----hcchHHhhcceeeCCCCChhhhhhhcCC
Q psy4447 125 VGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVK-----PFMKKDLLSLVHFHPEGDISSVYEFVPP 191 (261)
Q Consensus 125 ~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~f~~~~~~vk-----~fl~~~~~~ki~~~~~~~~~~L~~~i~~ 191 (261)
+.-+-.++...|-..- -+-|.++|..-+++-+..+++ .|++++-.+.+.+..+ .+++.+++.|
T Consensus 122 LdElfe~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~--~ee~~~~l~~ 189 (189)
T 3sbx_A 122 LDELLDVWTEGYLGMH--DKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVDN--LDDALQACAP 189 (189)
T ss_dssp HHHHHHHHHHHHTTSC--CCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEESS--HHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccc--CCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeCC--HHHHHHHhcC
Confidence 3445555555564432 357899999777777776553 4888999999999987 8888887754
No 17
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=43.91 E-value=13 Score=21.53 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=14.7
Q ss_pred HHHHHhCCCCHHHHHHHH
Q psy4447 4 ILIHHSCYFDLEASKSCI 21 (261)
Q Consensus 4 ~rFLra~~~dv~~A~~~l 21 (261)
..||.+++||++.|...+
T Consensus 24 ~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 24 RFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 578999999999997644
No 18
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=43.40 E-value=18 Score=21.75 Aligned_cols=21 Identities=14% Similarity=-0.020 Sum_probs=17.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHH
Q psy4447 3 LILIHHSCYFDLEASKSCIEV 23 (261)
Q Consensus 3 L~rFLra~~~dv~~A~~~l~~ 23 (261)
+..-|+++++|+++|...|-+
T Consensus 23 ik~~L~~~~Gd~d~Ai~~LL~ 43 (49)
T 1otr_A 23 LQVHLLENNNDLDLTIGLLLK 43 (49)
T ss_dssp HHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHh
Confidence 456799999999999998755
No 19
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=43.09 E-value=18 Score=21.94 Aligned_cols=20 Identities=10% Similarity=-0.127 Sum_probs=15.0
Q ss_pred HHHHHhCCCCHHHHHHHHHH
Q psy4447 4 ILIHHSCYFDLEASKSCIEV 23 (261)
Q Consensus 4 ~rFLra~~~dv~~A~~~l~~ 23 (261)
++=|+++++|+++|.+.|-.
T Consensus 30 ~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 30 LQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 45688888888888877643
No 20
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=42.41 E-value=19 Score=22.48 Aligned_cols=20 Identities=0% Similarity=-0.124 Sum_probs=16.9
Q ss_pred HHHHHhCCCCHHHHHHHHHH
Q psy4447 4 ILIHHSCYFDLEASKSCIEV 23 (261)
Q Consensus 4 ~rFLra~~~dv~~A~~~l~~ 23 (261)
++=|+++++|+++|.+.|-.
T Consensus 36 ~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 36 VAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHh
Confidence 57799999999999987754
No 21
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=40.98 E-value=14 Score=21.17 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=11.8
Q ss_pred HHHHHhCCCCHHHHHHHH
Q psy4447 4 ILIHHSCYFDLEASKSCI 21 (261)
Q Consensus 4 ~rFLra~~~dv~~A~~~l 21 (261)
.+=|+++++|+++|.+.|
T Consensus 22 ~~AL~~~~~n~e~A~~~L 39 (43)
T 2g3q_A 22 HNALEKCNWDLEAATNFL 39 (43)
T ss_dssp HHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHhCcCHHHHHHHH
Confidence 345677777777776655
No 22
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=40.87 E-value=21 Score=22.56 Aligned_cols=21 Identities=14% Similarity=-0.096 Sum_probs=15.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHH
Q psy4447 4 ILIHHSCYFDLEASKSCIEVY 24 (261)
Q Consensus 4 ~rFLra~~~dv~~A~~~l~~~ 24 (261)
.+=|+++++|+++|.+.|-..
T Consensus 27 ~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 27 RQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHC
Confidence 456888888888888777554
No 23
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=38.62 E-value=23 Score=23.28 Aligned_cols=21 Identities=10% Similarity=-0.134 Sum_probs=17.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHH
Q psy4447 3 LILIHHSCYFDLEASKSCIEV 23 (261)
Q Consensus 3 L~rFLra~~~dv~~A~~~l~~ 23 (261)
.++=|++.++|+++|.+.|-.
T Consensus 47 ~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 47 NLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHh
Confidence 367799999999999987743
No 24
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.55 E-value=24 Score=22.13 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=15.2
Q ss_pred HHHHHhCCCCHHHHHHHH
Q psy4447 4 ILIHHSCYFDLEASKSCI 21 (261)
Q Consensus 4 ~rFLra~~~dv~~A~~~l 21 (261)
..||.+++||++.|...+
T Consensus 34 ~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 34 KHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp HHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 578999999999998644
No 25
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=36.90 E-value=43 Score=26.41 Aligned_cols=63 Identities=10% Similarity=0.146 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhccccceeeeeEEEeCchHHHHHHHHhh-----hcchHHhhcceeeCCCCChhhhhhhcCC
Q psy4447 125 VGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVK-----PFMKKDLLSLVHFHPEGDISSVYEFVPP 191 (261)
Q Consensus 125 ~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~f~~~~~~vk-----~fl~~~~~~ki~~~~~~~~~~L~~~i~~ 191 (261)
+.-+-.++...|-.+. -+-|.++|..-+++-++++++ .|++++-.+.+.+..+ .+++.+++.+
T Consensus 131 ldEl~e~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~--~~e~~~~l~~ 198 (199)
T 3qua_A 131 LEEFFEAWTAGYLGMH--DKPLILLDPFGHYDGLLTWLRGLVPTGYVSQRAMDSLVVVDN--VEAALEACAP 198 (199)
T ss_dssp HHHHHHHHHHHHTTSC--CCCEEEECTTSTTHHHHHHHHHTTTTTSSCHHHHHTSEEESS--HHHHHHHHSC
T ss_pred HHHHHHHHHHHHhccC--CCCEEEEcCCccchHHHHHHHHHHHCCCCCHHHCCeEEEeCC--HHHHHHHHhc
Confidence 4445556666665542 357999998777777777654 4778888899999877 8888887754
No 26
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=36.56 E-value=31 Score=22.46 Aligned_cols=23 Identities=13% Similarity=0.008 Sum_probs=19.6
Q ss_pred CHHHHHHHhCCCCHHHHHHHHHH
Q psy4447 1 ETLILIHHSCYFDLEASKSCIEV 23 (261)
Q Consensus 1 ~~L~rFLra~~~dv~~A~~~l~~ 23 (261)
+|+.+.|..++.|+|.+...|-.
T Consensus 30 gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 30 GFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHc
Confidence 37889999999999999987744
No 27
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=35.20 E-value=22 Score=29.84 Aligned_cols=33 Identities=12% Similarity=0.005 Sum_probs=26.9
Q ss_pred ccceeeeeEEEeCchHHHHHHHHhhhcchHHhh
Q psy4447 139 LPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLL 171 (261)
Q Consensus 139 yP~rl~~i~iiN~P~~f~~~~~~vk~fl~~~~~ 171 (261)
....=.+++|||+||-+....+-+-|+|.+.+.
T Consensus 233 ~gm~gsGm~viNpP~~l~~~~~~~l~~l~~~l~ 265 (283)
T 2oo3_A 233 EGMTGCGLWIINPPYTFPSEIKLVLETLTTYFN 265 (283)
T ss_dssp CSCCEEEEEEESCCTTHHHHHHHHHHHHHHHSS
T ss_pred CCcCceeEEEECCchhHHHHHHHHHHHHHHHhC
Confidence 445556899999999999999888888877654
No 28
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=35.15 E-value=25 Score=21.24 Aligned_cols=18 Identities=11% Similarity=-0.029 Sum_probs=12.7
Q ss_pred HHHHHhCCCCHHHHHHHH
Q psy4447 4 ILIHHSCYFDLEASKSCI 21 (261)
Q Consensus 4 ~rFLra~~~dv~~A~~~l 21 (261)
++=|+++++|+++|.+.|
T Consensus 31 ~~AL~~t~gn~e~A~e~L 48 (52)
T 2jy5_A 31 LQALIATGGDINAAIERL 48 (52)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHH
Confidence 455777777887777665
No 29
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=33.08 E-value=21 Score=23.42 Aligned_cols=19 Identities=11% Similarity=-0.034 Sum_probs=13.1
Q ss_pred HHHHHhCCCCHHHHHHHHH
Q psy4447 4 ILIHHSCYFDLEASKSCIE 22 (261)
Q Consensus 4 ~rFLra~~~dv~~A~~~l~ 22 (261)
.+=|+++++|+++|.+.|-
T Consensus 47 ~~AL~~~~~nve~Ave~Ll 65 (73)
T 1vg5_A 47 EVALAAADDDLTVAVEILM 65 (73)
T ss_dssp HHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHH
Confidence 4457777778887776553
No 30
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=32.98 E-value=24 Score=20.74 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=14.0
Q ss_pred HHHHHhCCCCHHHHHH
Q psy4447 4 ILIHHSCYFDLEASKS 19 (261)
Q Consensus 4 ~rFLra~~~dv~~A~~ 19 (261)
..||.+++||++.|..
T Consensus 25 ~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 25 ITLLEQNNWDLVAAIN 40 (45)
T ss_dssp HHHHHHTTTCHHHHHT
T ss_pred HHHHHHcCCcHHHHHH
Confidence 4689999999999975
No 31
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.17 E-value=27 Score=22.30 Aligned_cols=18 Identities=11% Similarity=-0.003 Sum_probs=15.0
Q ss_pred HHHHHhCCCCHHHHHHHH
Q psy4447 4 ILIHHSCYFDLEASKSCI 21 (261)
Q Consensus 4 ~rFLra~~~dv~~A~~~l 21 (261)
..||..++||++.|...+
T Consensus 38 ~~~Le~~~WnLe~Av~~f 55 (67)
T 2dam_A 38 RHTLEQHNWNIEAAVQDR 55 (67)
T ss_dssp HHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 578999999999997744
No 32
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.51 E-value=33 Score=22.06 Aligned_cols=23 Identities=4% Similarity=-0.078 Sum_probs=18.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHH
Q psy4447 2 TLILIHHSCYFDLEASKSCIEVY 24 (261)
Q Consensus 2 ~L~rFLra~~~dv~~A~~~l~~~ 24 (261)
.+..-|+++++|++.|.+.|-+.
T Consensus 36 vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 36 IIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhc
Confidence 35667999999999999887553
No 33
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=31.38 E-value=50 Score=20.50 Aligned_cols=25 Identities=8% Similarity=-0.101 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH
Q psy4447 2 TLILIHHSCYFDLEASKSCIEVYFT 26 (261)
Q Consensus 2 ~L~rFLra~~~dv~~A~~~l~~~~~ 26 (261)
|=.++|..++||.++|.+.+....+
T Consensus 24 ~s~~cL~~~~Wd~~~A~~~F~~l~~ 48 (59)
T 1oai_A 24 WSQKCLQDNNWDYTRSAQAFTHLKA 48 (59)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4468999999999999998876543
No 34
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=31.37 E-value=44 Score=20.46 Aligned_cols=20 Identities=0% Similarity=0.018 Sum_probs=16.3
Q ss_pred HHHHHhCCCCHHHHHHHHHH
Q psy4447 4 ILIHHSCYFDLEASKSCIEV 23 (261)
Q Consensus 4 ~rFLra~~~dv~~A~~~l~~ 23 (261)
.+-|+..++|+++|...|-+
T Consensus 28 ~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 28 LRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp HHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHh
Confidence 46789999999999887754
No 35
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.23 E-value=36 Score=21.33 Aligned_cols=21 Identities=14% Similarity=-0.029 Sum_probs=14.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHH
Q psy4447 4 ILIHHSCYFDLEASKSCIEVY 24 (261)
Q Consensus 4 ~rFLra~~~dv~~A~~~l~~~ 24 (261)
.+=|+++++|+++|.+.|-.+
T Consensus 27 ~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 27 LKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp HHHHHHTTSCSHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhC
Confidence 345777777888777766654
No 36
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=29.04 E-value=30 Score=22.54 Aligned_cols=19 Identities=11% Similarity=-0.068 Sum_probs=13.3
Q ss_pred HHHHHhCCCCHHHHHHHHH
Q psy4447 4 ILIHHSCYFDLEASKSCIE 22 (261)
Q Consensus 4 ~rFLra~~~dv~~A~~~l~ 22 (261)
.+=||++++|+++|.+-|-
T Consensus 47 ~~AL~~t~~nve~Ave~L~ 65 (73)
T 1wiv_A 47 RKALKASGGDIEKATDWVF 65 (73)
T ss_dssp HHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHH
Confidence 3557777788888777654
No 37
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=28.80 E-value=42 Score=22.54 Aligned_cols=22 Identities=0% Similarity=-0.220 Sum_probs=16.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH
Q psy4447 3 LILIHHSCYFDLEASKSCIEVY 24 (261)
Q Consensus 3 L~rFLra~~~dv~~A~~~l~~~ 24 (261)
..+=|+++++|+++|.+.|-.+
T Consensus 46 A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 46 AEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHhC
Confidence 3466888888998888877654
No 38
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.74 E-value=42 Score=21.38 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=15.2
Q ss_pred HHHHHhCCCCHHHHHHHH
Q psy4447 4 ILIHHSCYFDLEASKSCI 21 (261)
Q Consensus 4 ~rFLra~~~dv~~A~~~l 21 (261)
..||.+.+||++.|...+
T Consensus 36 ~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 36 KQLLQAAHWQFETALSTF 53 (66)
T ss_dssp HHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 468999999999998754
No 39
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=26.12 E-value=1.2e+02 Score=20.13 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=31.1
Q ss_pred EEEEeCCCCCcccccccCHHHHHHHHHHhhccccceeeeeEEEeCchHHHHHHHHhh
Q psy4447 107 IFLFDMAGVRLGHVLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVK 163 (261)
Q Consensus 107 v~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~f~~~~~~vk 163 (261)
.+|+|+++++.-. .+.+..+..+.+. ...+=..+.++|++.-+..++....
T Consensus 46 ~vvlDls~v~~iD-----ssgl~~L~~~~~~-~~~~g~~l~l~~~~~~v~~~l~~~g 96 (110)
T 1sbo_A 46 KIVLDLSSVSYMD-----SAGLGTLVVILKD-AKINGKEFILSSLKESISRILKLTH 96 (110)
T ss_dssp EEEEECTTCCCBC-----HHHHHHHHHHHHH-HHHTTCEEEEESCCHHHHHHHHHTT
T ss_pred EEEEECCCCcEEc-----cHHHHHHHHHHHH-HHHcCCEEEEEeCCHHHHHHHHHhC
Confidence 5699999998643 3333333333332 2233467889999887776666543
No 40
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=26.06 E-value=39 Score=21.47 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=15.8
Q ss_pred HHHhCCCCHHHHHHHHHHH
Q psy4447 6 IHHSCYFDLEASKSCIEVY 24 (261)
Q Consensus 6 FLra~~~dv~~A~~~l~~~ 24 (261)
=|..+++|+++|...|++-
T Consensus 30 AL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 30 ALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHTSCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHH
Confidence 3678899999999988764
No 41
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=23.95 E-value=46 Score=20.57 Aligned_cols=22 Identities=5% Similarity=0.157 Sum_probs=19.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHH
Q psy4447 2 TLILIHHSCYFDLEASKSCIEV 23 (261)
Q Consensus 2 ~L~rFLra~~~dv~~A~~~l~~ 23 (261)
|=.++|...+||.++|...+..
T Consensus 23 ~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 23 YTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 4468899999999999998877
No 42
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=23.61 E-value=1.3e+02 Score=21.00 Aligned_cols=52 Identities=6% Similarity=0.060 Sum_probs=32.6
Q ss_pred EEEEEeCCCCCcccccccCHHHHHHHHHHhhccccceeeeeEEEeCchHHHHHHHHhh
Q psy4447 106 YIFLFDMAGVRLGHVLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVK 163 (261)
Q Consensus 106 ~v~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~f~~~~~~vk 163 (261)
-.+|+|++++++-. .+.+..+..+.+. .-.+=..+.++|++.-...++.+..
T Consensus 53 ~~vvlDls~V~~iD-----SsGl~~L~~~~~~-~~~~g~~l~l~~~~~~v~~~l~~~g 104 (125)
T 2ka5_A 53 NKIFLVLSDVESID-----SFSLGVIVNILKS-ISSSGGFFALVSPNEKVERVLSLTN 104 (125)
T ss_dssp CEEEEECTTCSCCC-----HHHHHHHHHHHHH-HHHHTCEEEEECCCHHHHHHHHHTT
T ss_pred CEEEEECCCCCEEc-----HHHHHHHHHHHHH-HHHcCCEEEEEeCCHHHHHHHHHcC
Confidence 46899999998643 2333333333332 2233467899999988877776653
No 43
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=23.46 E-value=99 Score=24.54 Aligned_cols=62 Identities=13% Similarity=0.252 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhccccceeeeeEEEeCchHHHHHHHHh-----hhcchHHhhcceeeCCCCChhhhhhhcC
Q psy4447 125 VGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVV-----KPFMKKDLLSLVHFHPEGDISSVYEFVP 190 (261)
Q Consensus 125 ~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~f~~~~~~v-----k~fl~~~~~~ki~~~~~~~~~~L~~~i~ 190 (261)
+.-+-.++...|-.. .-+-|.++|..-+++-++.++ ..|++++..+.+.+..+ .+++.+.+.
T Consensus 123 LdElfE~lt~~qlg~--~~kPvvll~~~g~w~~l~~~l~~~~~~Gfi~~~~~~~~~~~d~--~ee~~~~l~ 189 (215)
T 2a33_A 123 LEELLEVITWAQLGI--HDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPT--AKELVKKLE 189 (215)
T ss_dssp HHHHHHHHHHHHTTS--CCCCEEEECGGGTTHHHHHHHHHHHHHTSSCHHHHTTEEEESS--HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CCCCeEEecCcchhHHHHHHHHHHHHcCCCCHHHCCeEEEeCC--HHHHHHHHH
Confidence 344555555655543 246688999876667777754 45778888999888877 788877764
No 44
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=22.54 E-value=1.2e+02 Score=23.51 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=21.8
Q ss_pred CCCcHHHHHHhhhccccccCC-CCCCCCEEEEE
Q psy4447 39 DINRPELLAQSKVVEFGAIAP-KTPQGYQVIFH 70 (261)
Q Consensus 39 ~~~~~~~~~~l~~g~~~~~l~-~D~~G~~V~~~ 70 (261)
..+.+++..+++.-.-+ -.| ..++|||+++.
T Consensus 152 ~Ls~~Em~~Ll~~L~~~-~~p~~CpHGRPt~~~ 183 (197)
T 3kdg_A 152 HLRNDEIKALLDDLRST-SDPFTCPHGRPIIIH 183 (197)
T ss_dssp CCCHHHHHHHHHHHHHS-SCTTBCTTSCBCEEE
T ss_pred CCCHHHHHHHHHHHHcC-CCCCcCCCCCcEEEE
Confidence 35567777777655445 566 79999998773
No 45
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=21.48 E-value=1.3e+02 Score=22.35 Aligned_cols=39 Identities=15% Similarity=0.069 Sum_probs=28.7
Q ss_pred cCcEEEEEeCCCCCcccccccCHHHHHHHHHHhhccccceeeeeEEEeCc
Q psy4447 103 VPGYIFLFDMAGVRLGHVLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTR 152 (261)
Q Consensus 103 ~~g~v~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P 152 (261)
..|.++|.|.. | +|..++.++..+++.||. +++++|-.|
T Consensus 34 ~~g~~vi~Dya-----H----nP~si~a~l~al~~~~~~--~riivvf~~ 72 (163)
T 3mvn_A 34 VNNITVYDDFA-----H----HPTAITATIDALRAKVGQ--QRILAVLEP 72 (163)
T ss_dssp ETTEEEEEECC-----C----SHHHHHHHHHHHHHHHTT--SCEEEEECC
T ss_pred CCCcEEEEcCC-----C----CHHHHHHHHHHHHHhcCC--CcEEEEECC
Confidence 45788999943 2 578889999999988886 356666554
No 46
>3ct6_A PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DHAM; mixed alpha beta structure, glycerol metabolism; 1.10A {Lactococcus lactis} SCOP: c.54.1.2 PDB: 3cr3_C*
Probab=21.34 E-value=1.5e+02 Score=21.45 Aligned_cols=42 Identities=12% Similarity=0.164 Sum_probs=25.2
Q ss_pred CcEEEEEeCCCCCcccccccCHHHHHHHHHHhhccccceeeeeEEEeCchHHHHHHHH
Q psy4447 104 PGYIFLFDMAGVRLGHVLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFV 161 (261)
Q Consensus 104 ~g~v~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yP~rl~~i~iiN~P~~f~~~~~~ 161 (261)
+|++++.|+ |-+..+. ...+. +.+ | ++.++|.|.+..++-..
T Consensus 59 dgVlvltDL-Ggsp~N~--------~~al~-~~~--~----~v~viNlPmvega~~aa 100 (131)
T 3ct6_A 59 DNLLTFFDL-GSARMNL--------DLVSE-MTD--K----ELTIFNVPLIEGAYTAS 100 (131)
T ss_dssp SEEEEEESS-GGGHHHH--------HHHHH-TCS--S----EEEECCSCHHHHHHHHH
T ss_pred CCEEEEEeC-CCChHHH--------HHHHH-hcC--C----CEEEEEhhHHHHHHHHH
Confidence 799999999 5443221 11111 111 2 78888999996666543
No 47
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=21.22 E-value=63 Score=19.84 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCCHHHHHHHH
Q psy4447 2 TLILIHHSCYFDLEASKSCI 21 (261)
Q Consensus 2 ~L~rFLra~~~dv~~A~~~l 21 (261)
++.+-|..+++|+.+|.+.|
T Consensus 23 ~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 23 FIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHH
Confidence 56788999999999999877
No 48
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=21.19 E-value=60 Score=21.51 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=17.1
Q ss_pred HHHHHHHhCCCCHHHHHHHH
Q psy4447 2 TLILIHHSCYFDLEASKSCI 21 (261)
Q Consensus 2 ~L~rFLra~~~dv~~A~~~l 21 (261)
++.+-|..+++|+.+|.+.|
T Consensus 45 ~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 45 HIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHh
Confidence 56778999999999998876
No 49
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.08 E-value=77 Score=19.98 Aligned_cols=21 Identities=5% Similarity=-0.096 Sum_probs=15.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHH
Q psy4447 3 LILIHHSCYFDLEASKSCIEV 23 (261)
Q Consensus 3 L~rFLra~~~dv~~A~~~l~~ 23 (261)
-.+=|++++.|+|+|.+-|=.
T Consensus 36 A~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 36 VLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHh
Confidence 356688888999988875533
No 50
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=20.01 E-value=1.7e+02 Score=18.75 Aligned_cols=30 Identities=7% Similarity=0.016 Sum_probs=26.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHhhCC
Q psy4447 3 LILIHHSCYFDLEASKSCIEVYFTTRTNTP 32 (261)
Q Consensus 3 L~rFLra~~~dv~~A~~~l~~~~~~R~~~~ 32 (261)
+...|..++||..+....|+.+.+.++++.
T Consensus 14 iQ~CL~~N~yd~skCq~~id~L~eCc~~~~ 43 (68)
T 1hp8_A 14 IQKCLQANSYMESKCQAVIQELRKCCAQYP 43 (68)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHc
Confidence 456799999999999999999999999874
Done!