RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4447
(261 letters)
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain.
Length = 152
Score = 83.1 bits (206), Expect = 7e-20
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 62 PQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH--VEGTVPGYIFLFDMAGVRLGH 119
+G V++ R + +P K ++ VR L + ++ L EG + G + DM G+ L +
Sbjct: 11 KEGRPVLYLRPGRHDPKKSSLEELVRFLVLVLERALLLLPEGQIEGITVIIDMKGLSLSN 70
Query: 120 VLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPE 179
+ + + L K LQ+ P RL I I+N + + I ++KPF+ +HFH
Sbjct: 71 MDKWPISFLKKILKILQDNYPERLGKILIVNAPWIFNVIWKLIKPFLDPKTREKIHFHKN 130
Query: 180 GDISSVYEFVPPKCIP---GGD 198
++ + +++PP+ +P GG
Sbjct: 131 SNLEELLKYIPPEQLPKEYGGT 152
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain. Found in
secretory proteins, such as S. cerevisiae
phosphatidylinositol transfer protein (Sec14p), and in
lipid regulated proteins such as RhoGAPs, RhoGEFs and
neurofibromin (NF1). SEC14 domain of Dbl is known to
associate with G protein beta/gamma subunits.
Length = 157
Score = 72.0 bits (177), Expect = 1e-15
Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 4/144 (2%)
Query: 54 FGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSV-RLLAMSID-ACLHVEGTVPGYIFLFD 111
G + + +G V+ R + SK + + + R L +++ + V G++ + D
Sbjct: 10 VGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIID 69
Query: 112 MAGVRLGHVLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLL 171
+ G+ L H L L K LQ+ P RLK ++I+N + +VKPF+ +
Sbjct: 70 LKGLSLSH-LLPDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTR 128
Query: 172 SLVHFHPEGDISSVYEFVPPKCIP 195
+ F D + +++ + +P
Sbjct: 129 KKIVFL-GSDKEELLKYIDKEQLP 151
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S. cerevisiae
phosphatidylinositol transfer protein (Sec14p). Domain
in homologues of a S. cerevisiae phosphatidylinositol
transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and
the RasGAP, neurofibromin (NF1). Lipid-binding domain.
The SEC14 domain of Dbl is known to associate with G
protein beta/gamma subunits.
Length = 158
Score = 46.9 bits (112), Expect = 1e-06
Identities = 30/145 (20%), Positives = 61/145 (42%), Gaps = 9/145 (6%)
Query: 62 PQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH---VEGTVPGYIFLFDMAGVRLG 118
G V+ R +F+ ++ +R L ++ L G + G+ +FD+ G+ +
Sbjct: 17 KDGRPVLIERAGRFDLKSVTLEELLRYLVYVLEKILQEEKKTGGIEGFTVIFDLKGLSMS 76
Query: 119 HVLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHP 178
+ + L K LQ+ P RL ++I+N + ++KPF+ + + F
Sbjct: 77 NPD---LSVLRKILKILQDHYPERLGKVYIINPPWFFRVLWKIIKPFLDEKTREKIRFVG 133
Query: 179 EGDISSVYEFVPPKCIP---GGDLK 200
+ E++ + +P GG L
Sbjct: 134 NDSKEELLEYIDKEQLPEELGGTLD 158
>gnl|CDD|211904 TIGR04108, HutX, putative heme utilization carrier protein HutX.
Members of this protein family are HutX, found paired
with HutW in some heme utilization loci although not
shown directly to be necessary for heme utilization.
This protein is homologous to the heme carrier protein
HemS, while its partner HutW is homologous to (but does
not complement) HemN, the radical SAM enzyme
oxygen-independent coproporphyrinogen III oxidase
involved in heme biosynthesis.
Length = 153
Score = 28.4 bits (64), Expect = 2.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 154 LIDKIMFVVKPFMKKDLLSLVHFHPEGD 181
I V +PFM K+ S+ F+ EG+
Sbjct: 100 NCAAIALVSRPFMGKETHSVQFFNAEGE 127
>gnl|CDD|177395 PHA02565, 49, recombination endonuclease VII; Provisional.
Length = 157
Score = 28.6 bits (64), Expect = 2.5
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 212 EYVEWMKNLVEFFLQD-------EKYQVDESKRVKNKKSAAKQLE 249
+Y+EW++NL+ + D ++ D+ KR E
Sbjct: 83 DYIEWLENLLVYLKSDYSDNNIHPQFVPDKVKRFSRLTKEEMIAE 127
>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain. This family
includes divergent members of the CRAL-TRIO domain
family. This family includes ECM25 that contains a
divergent CRAL-TRIO domain identified by Gallego and
colleagues.
Length = 149
Score = 28.1 bits (63), Expect = 3.4
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 105 GYIFLFDMAGVRLGHVLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKP 164
G++ + D GV + S L K + L P LK ++I++ + K + +
Sbjct: 50 GFVVVIDHTGVT---RNKPSWSWLKKLYKLLPRAFPKNLKAVYIVHPSTFLKKFLKTLGR 106
Query: 165 FM--KKDLLSLVHFHPEGDISSVYEFVP----PKCIPG 196
KK V + +S + E++ P + G
Sbjct: 107 LFSSKKLFKKKVIYVS--SLSELSEYIDPTQLPLELGG 142
>gnl|CDD|226923 COG4550, COG4550, Predicted membrane protein [Function unknown].
Length = 120
Score = 27.1 bits (60), Expect = 4.9
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 205 DSKTLHNEYVEWMKNL--VEFFLQDEKYQVDESKRVKNKKSAAKQLEKTQVSLQKLE 259
D + +K V+FF Q E Q++ +++VK K K+L+K V+LQ +
Sbjct: 6 DILKQADNLANKIKETEEVKFFQQAEA-QINANQKVKTKVDEIKKLQKEAVNLQHYD 61
>gnl|CDD|222364 pfam13759, 2OG-FeII_Oxy_5, Putative 2OG-Fe(II) oxygenase. This
family has structural similarity to the 2OG-Fe(II)
oxygenase superfamily.
Length = 101
Score = 26.8 bits (60), Expect = 5.5
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 175 HFHPEGDISSVY 186
H HP +S VY
Sbjct: 16 HNHPNSWLSGVY 27
>gnl|CDD|189554 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase.
Some members of this family probably do not have lipid
kinase activity and are protein kinases, .
Length = 233
Score = 27.3 bits (61), Expect = 7.4
Identities = 10/60 (16%), Positives = 15/60 (25%), Gaps = 3/60 (5%)
Query: 187 EFVPPKCIPGGD---LKGDLPDSKTLHNEYVEWMKNLVEFFLQDEKYQVDESKRVKNKKS 243
IP G L +P+S TL +M + + R
Sbjct: 37 RLAAYLVIPLGPGSGLIEWVPNSTTLAEIPRTYMVKKGIPLFNYSRKVLVFESRTALFPK 96
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.413
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,322,007
Number of extensions: 1287467
Number of successful extensions: 1032
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1029
Number of HSP's successfully gapped: 17
Length of query: 261
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 166
Effective length of database: 6,723,972
Effective search space: 1116179352
Effective search space used: 1116179352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)