RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4447
(261 letters)
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with
vitamin E deficiency, transport protein; HET: MSE VIV;
1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A*
1oip_A*
Length = 262
Score = 170 bits (433), Expect = 2e-52
Identities = 39/224 (17%), Positives = 96/224 (42%), Gaps = 5/224 (2%)
Query: 8 HSCYFDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEFGAIAPKTPQGYQV 67
+ FDL+ + ++ Y+ R PE + ++ K G + + P G +V
Sbjct: 41 RARDFDLDLAWRLLKNYYKWRAECPEISADLH--PRSIIGLLKAGYHGVLRSRDPTGSKV 98
Query: 68 IFHRLQQFEPSKYVFQDSVRLLAMSIDACLHVEGT-VPGYIFLFDMAGVRLGHVLRLSVG 126
+ +R+ ++P + D R+ ++ + + T G +FD+ G + H +++
Sbjct: 99 LIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPS 158
Query: 127 QLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVY 186
K L + P++++GIH++N + + ++KPF+ + + +H H S+
Sbjct: 159 VAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLL 218
Query: 187 EFVPPKCIPGGDLKGDLPDSKTLHNEYVEWMKNLVEFFLQDEKY 230
+ P +P + G+ + + E+ ++ ++ +
Sbjct: 219 QH-FPDILP-LEYGGEEFSMEDICQEWTNFIMKSEDYLSSISES 260
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein,
11-CIS-retinal, bothnia dystrophy, acetylation,
cytoplasm, disease mutation; HET: RET; 1.69A {Homo
sapiens} PDB: 3hy5_A*
Length = 316
Score = 162 bits (413), Expect = 7e-49
Identities = 43/226 (19%), Positives = 84/226 (37%), Gaps = 12/226 (5%)
Query: 8 HSCYFDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEFGAIAPKTPQGYQV 67
+ F++ + + Y R PE F + + G ++ + G V
Sbjct: 100 RARKFNVGRAYELLRGYVNFRLQYPELFDSLSP--EAVRCTIEAGYPGVLSSRDKYGRVV 157
Query: 68 IFHRLQQFEPSKYVFQDSVRLLAMSIDACLHVEGT-VPGYIFLFDMAGVRLGHVLRLSVG 126
+ ++ ++ + F + ++ ++ L E T + G+ + + G + L
Sbjct: 158 MLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTS 217
Query: 127 QLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVY 186
L K LQ+ P K IH ++ VVKPF+K LL V H + D+S Y
Sbjct: 218 DLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGD-DLSGFY 276
Query: 187 EFVPPKCIPGGDLKGDLPDSKTLHNEYVEWMKNLV--EFFLQDEKY 230
+ + +P D G LP + + L + ++ +
Sbjct: 277 QEIDENILP-SDFGGTLPKY-----DGKAVAEQLFGPQAQAENTAF 316
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
biosynthesis, oxidized vitamin E, lipid-binding,
transport, transcription regulation; HET: VTQ; 1.95A
{Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
1o6u_A* 1olm_E*
Length = 403
Score = 71.9 bits (176), Expect = 1e-14
Identities = 29/196 (14%), Positives = 63/196 (32%), Gaps = 9/196 (4%)
Query: 51 VVEFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLHVEGTVPGYIFLF 110
G + K + + + + ++ LL + V ++
Sbjct: 100 YDIIGPLDAKG------LLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIY 153
Query: 111 DMAGVRLGHVLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDL 170
D G+ L H+ + +V +F +E P LK + ++ L ++KPF+ +D
Sbjct: 154 DCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDT 213
Query: 171 LSLVHFHPEGDISSVYEFVPPKCIP---GGDLKGDLPDSKTLHNEYVEWMKNLVEFFLQD 227
+ + + + P +P GG + + K +
Sbjct: 214 RKKIMVLGANWKEVLLKHISPDQVPVEYGGTMTDPDGNPKCKSKINYGGDIPRKYYVRDQ 273
Query: 228 EKYQVDESKRVKNKKS 243
K Q + S ++ S
Sbjct: 274 VKQQYEHSVQISRGSS 289
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 2e-05
Identities = 48/296 (16%), Positives = 92/296 (31%), Gaps = 96/296 (32%)
Query: 22 EVYFTTRT---NTPEFFSKRDINRPELLAQSKVVEFGAIAPKTPQGYQVIFHRLQQFEPS 78
+Y R N + F+K +++R + + + L + P+
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-------------------LLELRPA 150
Query: 79 KYVFQD-------SVRLLAMSIDACL--HVEGTVPGYIFLFDMAGVR-----LGHVLRLS 124
K V D + +A +D CL V+ + IF ++ L + +L
Sbjct: 151 KNVLIDGVLGSGKTW--VA--LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 125 VGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSL--V-------H 175
Q+ + + IH + + + KP+ + LL L V
Sbjct: 207 Y-QIDPNWTSRSDHSSNIKLRIHSIQAE---LRRLLKSKPY-ENCLLVLLNVQNAKAWNA 261
Query: 176 FHPEGDIS----------SVYEFVPP---KCIPGGDLKGDL--PDSKTLHNEYVEWMK-- 218
F ++S V +F+ I L + K+L +Y++ +
Sbjct: 262 F----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQ 316
Query: 219 --------------NLVEFFLQDEKYQVDESKRVKNKKSAAKQLEKT-QVSLQKLE 259
+++ ++D D K V K L + SL LE
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK-----LTTIIESSLNVLE 367
Score = 40.2 bits (93), Expect = 5e-04
Identities = 40/252 (15%), Positives = 73/252 (28%), Gaps = 77/252 (30%)
Query: 11 YFDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEFGAIAPKTPQGYQVIFH 70
F+L SC ++ TTR + L+ + + H
Sbjct: 261 AFNL----SC-KILLTTR----------FKQVTDFLSAATTTHI------------SLDH 293
Query: 71 RLQQFEPSKYVFQDSVRLLAMSID---ACLHVE--GTVPGYIFLF-----DMAGV----- 115
P + LL +D L E T P + + D
Sbjct: 294 HSMTLTPDE-----VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 116 -----RLGHVLRLSVGQLS-----KFFLYL---QEGLPVRLKGIHILNTRPLIDKIMFVV 162
+L ++ S+ L K F L + + ++ + +M VV
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 163 KPFMKKDLLSLVHFHPEGDISSVYEFVPPKCIPGGDLKGDLPDSKTLHNEYVEWMKNLVE 222
K SLV P+ S+ +LK L + LH +++V+
Sbjct: 409 NKLHKY---SLVEKQPKESTISIPSIYL-------ELKVKLENEYALH-------RSIVD 451
Query: 223 FFLQDEKYQVDE 234
+ + + D+
Sbjct: 452 HYNIPKTFDSDD 463
Score = 31.7 bits (71), Expect = 0.23
Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 36/125 (28%)
Query: 147 HILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVYEFVPPKCIPGGDLKGDLP-- 204
HI+ ++ + + + + K E V +FV L+ +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSK---------QE---EMVQKFV------EEVLRINYKFL 94
Query: 205 ------------DSKTLHNEYVEWMKNLVEFFLQDEKYQVDESKRVKNKKSAAKQLEKTQ 252
++ E + + N + F KY V + + A +L +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF---AKYNVSRLQPYLKLRQALLELRPAK 151
Query: 253 -VSLQ 256
V +
Sbjct: 152 NVLID 156
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif,
signaling protein, directed evoluti SEC14, phospholipid
transporter, lipid; HET: PEE; 1.80A {Saccharomyces
cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Length = 320
Score = 39.8 bits (93), Expect = 4e-04
Identities = 30/191 (15%), Positives = 70/191 (36%), Gaps = 17/191 (8%)
Query: 32 PEFFSKRDIN-RPELLAQSKVVEFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLA 90
P+++ D + RP E G I K ++ + + + + ++
Sbjct: 120 PQYYHHVDKDGRPLY-----FAELGGINLKK------MYKITTEKQMLRNLVKEYELFAT 168
Query: 91 MSIDACLHVEGT-VPGYIFLFDMAGVRLGHVLRLSVGQLSKFFLYLQEGLPVRLKGIHIL 149
+ AC G + + D+ G+ L + + + + Q P R+ +I+
Sbjct: 169 YRVPACSRRAGYLIETSCTVLDLKGISLSNAYHV-LSYIKDVADISQNYYPERMGKFYII 227
Query: 150 NTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVYEFVPPKCIP---GGDLKGDLPDS 206
++ + +VKPF+ +S + + + +P + +P GG P+
Sbjct: 228 HSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKYGGTSVLHNPND 287
Query: 207 KTLHNEYVEWM 217
K +++ W
Sbjct: 288 KFYYSDIGPWR 298
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding
protein, peripheral golgi membrane protein, phospholipid
exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae}
SCOP: a.5.3.1 c.13.1.1
Length = 296
Score = 39.3 bits (92), Expect = 6e-04
Identities = 32/198 (16%), Positives = 67/198 (33%), Gaps = 15/198 (7%)
Query: 24 YFTTRTNTPEFFSKRDIN-RPELLAQSKVVEFGAIAPKTPQGYQVIFHRLQQFEPSKYVF 82
P+++ K D + RP + V + T + + + ++E
Sbjct: 97 KPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNL-VWEYE-----S 150
Query: 83 QDSVRLLAMSIDACLHVEGTVPGYIFLFDMAGVRLGHVLRLSVGQLSKFFLYLQEGLPVR 142
RL A S A VE + + D+ G+ + + + + + Q P R
Sbjct: 151 VVQYRLPACSRAAGHLVETSC----TIMDLKGISISSAYSV-MSYVREASYISQNYYPER 205
Query: 143 LKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVYEFVPPKCIP---GGDL 199
+ +I+N + KPF+ +S + + + +P + +P GG
Sbjct: 206 MGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGGKS 265
Query: 200 KGDLPDSKTLHNEYVEWM 217
+ D ++ W
Sbjct: 266 EVDESKGGLYLSDIGPWR 283
>1g03_A HTLV-I capsid protein; beta hairpin loop, helix core, viral
protein; NMR {Human t-lymphotropic virus 1} SCOP:
a.73.1.1
Length = 134
Score = 32.9 bits (74), Expect = 0.038
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 53 EFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH 98
E AP +PQ Q I +QQF+P+ QD ++ L S+ A LH
Sbjct: 26 EVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLH 71
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding
protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A*
3p7z_A* 2d4q_A*
Length = 256
Score = 29.9 bits (67), Expect = 0.63
Identities = 20/157 (12%), Positives = 51/157 (32%), Gaps = 13/157 (8%)
Query: 58 APKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLHVEGTVPGYIFLFDMAGVRL 117
A + G + ++ ++F+ + + + +++ Y + D+
Sbjct: 16 AGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKP-----YEIVVDLTHTGP 70
Query: 118 GHVLRLSVGQLSKFFLYLQEGLPVRLKGIHILN-TRPLIDKIMFVVKPFMKKDLLSLVHF 176
+ R LSK+F+ + ++I N + + + + + F
Sbjct: 71 SN--RFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVF 128
Query: 177 HPEGDISSVYEFVPPK--CIPGGDLKGDLPDSKTLHN 211
+ E + + +P L + D K HN
Sbjct: 129 I--DCPGKLAEHIEHEQQKLPAATLALE-EDLKVFHN 162
>2wau_A VAR2CSA, erythrocyte membrane protein 1 (pfemp1); chondroitin
sulphate A, membrane protein DBL, malaria; 3.00A
{Plasmodium falciparum}
Length = 302
Score = 29.8 bits (67), Expect = 0.89
Identities = 5/41 (12%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 211 NEYVEWMKNL-VEFFLQDEKYQVDESKRVKNKKSAAKQLEK 250
Y ++ E+ + +Y ++ + KK + + +
Sbjct: 224 KNYSNFILIKKKEYQSLNSQYDMNYKETKAEKKESPEYFKD 264
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 1.3
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 22/72 (30%)
Query: 204 PDSKTLHNEYV-EW----MKNLVEFFLQDEKYQVDESKRVKNKKSAAK-----------Q 247
D T E + +W K L E D + + ++ A K Q
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQE---LDAA---SKVMEQEWREKAKKDLEEWNQRQSEQ 130
Query: 248 LEKTQVSLQKLE 259
+EK +++ + +
Sbjct: 131 VEKNKINNRIAD 142
>2hqv_A AGR_C_4470P; NESG, ATR92, Q7CX01_AGRT5, structural genomics, PSI-2,
protein structure initiative; 2.00A {Agrobacterium
tumefaciens str} SCOP: e.62.1.2
Length = 195
Score = 28.4 bits (63), Expect = 1.9
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 122 RLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGD 181
L G S + + P+ G HI I FV + F + S+ + G
Sbjct: 101 HLPEGTESHGWFNIHGDSPI---GGHIKKDN--CAAITFVDRGFHGRRSCSVWFMNAAGG 155
Query: 182 -ISSVY 186
+ ++
Sbjct: 156 AMFKIF 161
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold,
structural genomics, joint center for structural
genomics, JCSG; 1.70A {Thermotoga maritima} SCOP:
c.23.16.1
Length = 239
Score = 28.2 bits (63), Expect = 2.0
Identities = 7/55 (12%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 176 FHPEGDISSVYEFVP--PKCI--PGGDLKGDLPDSKTLHNEYVEWMKNLVEFFLQ 226
FH E ++ ++ + D + L ++ +++L+E ++
Sbjct: 184 FHIEVGARTMKRWIEAYKDELEKKKIDPRLLLETAEREEKVLKGLLRSLLERMVE 238
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Length = 170
Score = 28.0 bits (62), Expect = 2.3
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 10/49 (20%)
Query: 68 IFHRLQQFEPSKYVFQDSVRLLAMSIDACLHVEGTVPGYIFLF-DMAGV 115
L + E D VRLLA ++ +G V Y+ + + G+
Sbjct: 13 KLQTLTKQEDE---LFDVVRLLAQALVG----QGKV--YLDAYGEFEGL 52
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain,
phosphatidylethanolamin binding, lipid binding, lipid
bindi protein; HET: PEV; 2.52A {Homo sapiens}
Length = 290
Score = 28.5 bits (63), Expect = 2.4
Identities = 17/163 (10%), Positives = 52/163 (31%), Gaps = 10/163 (6%)
Query: 33 EFFSKRDINRPELLAQSKVVEFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMS 92
EF ++ ++ E K + A + G + ++ ++F+ + + + ++
Sbjct: 10 EFMTRHQVHEKEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLT 69
Query: 93 IDACLHVEGTVPGYIFLFDMAGVRLGHVLRLSVGQLSKFFLYLQEGLPVRLKGIHILN-T 151
+ Y + D+ + + LSK+F+ + ++I N
Sbjct: 70 LKPYYAKP-----YEIVVDLTHTGPSNRFKTDF--LSKWFVVFPGFAYDNVSAVYIYNCN 122
Query: 152 RPLIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVYEFVPPKCI 194
+ + + + + F + E + +
Sbjct: 123 SWVREYTKYHERLLTGLKGSKRLVFID--CPGKLAEHIEHEQQ 163
>3qv0_A Mitochondrial acidic protein MAM33; A BOWL like structure,
mitochondrial oxidative phosphorylati protein binding;
2.10A {Saccharomyces cerevisiae}
Length = 227
Score = 26.9 bits (59), Expect = 5.5
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 210 HNEYVEWMKNLVEFF 224
+NEY+ W++ + +FF
Sbjct: 212 NNEYISWLEKMKKFF 226
>3f6y_A ADP-ribosyl cyclase 1; calcium loaded structure, active site
closure, inhibitory conformation, alternative splicing,
diabetes mellitus; 1.45A {Homo sapiens} PDB: 2o3s_A*
3dzh_A* 2i67_A* 2pgj_A* 3dzf_A* 2i66_A* 3dzg_A* 3dzi_A*
3dzk_A* 3i9m_A* 3i9n_A* 2o3t_A* 2o3q_A* 2i65_A* 2o3u_A*
2pgl_A* 2o3r_A* 2hct_A* 3dzj_A* 3raj_A ...
Length = 262
Score = 26.9 bits (59), Expect = 6.3
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 61 TPQGYQVIFHRLQQFEP-SKYVFQDSVRLLAMSI----DACLHVEGTVPGYIF 108
T + YQ + Q P +K + ++ LA +E T+ GY+
Sbjct: 64 TEEDYQPLMKLGTQTVPCNKILLWSRIKDLAHQFTQVQRDMFTLEDTLLGYLA 116
>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein
structure initiative, STRU genomics of pathogenic
protozoa consortium, SGPP; 2.30A {Leishmania major}
SCOP: d.25.1.1
Length = 203
Score = 26.9 bits (59), Expect = 6.7
Identities = 3/15 (20%), Positives = 7/15 (46%)
Query: 210 HNEYVEWMKNLVEFF 224
+Y W+ + +F
Sbjct: 188 QQDYEAWLTTMNKFA 202
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei}
Length = 182
Score = 26.4 bits (58), Expect = 7.9
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 210 HNEYVEWMKNLVEFF 224
+Y EW+ ++ +F
Sbjct: 167 QADYEEWLSSINKFV 181
>2ovi_A Hypothetical protein CHUX; SETS of 9 antiparallel beta sheet core
flanked by 2 SETS of 3 helices and another 2 SETS of
helices; 2.05A {Escherichia coli O157}
Length = 164
Score = 26.0 bits (57), Expect = 9.2
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 145 GIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGD-ISSVY 186
HI I + + FM D S++ F+ EG + ++
Sbjct: 96 SGHIKAEN--CTHIALIERKFMGMDTASILFFNKEGSAMLKIF 136
>2ph0_A Uncharacterized protein; Q6D2T7, ERWCT, NESG, EWR41, structural
genomics, PSI-2, protein structure initiative; 1.85A
{Pectobacterium carotovorum}
Length = 174
Score = 26.1 bits (57), Expect = 9.8
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 145 GIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGD-ISSVY 186
HI T I F+ + FM D S+V F+ G + ++
Sbjct: 97 SGHIRATS--CQHIAFIERKFMGMDTASVVFFNANGAAMFKIF 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.413
Gapped
Lambda K H
0.267 0.0598 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,958,879
Number of extensions: 234480
Number of successful extensions: 474
Number of sequences better than 10.0: 1
Number of HSP's gapped: 463
Number of HSP's successfully gapped: 29
Length of query: 261
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 169
Effective length of database: 4,133,061
Effective search space: 698487309
Effective search space used: 698487309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.6 bits)