RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4447
(261 letters)
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 185
Score = 102 bits (254), Expect = 2e-27
Identities = 29/171 (16%), Positives = 75/171 (43%), Gaps = 3/171 (1%)
Query: 60 KTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLHVEGT-VPGYIFLFDMAGVRLG 118
+ P G +V+ +R+ ++P + D R+ ++ + + T G +FD+ G +
Sbjct: 17 RDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFS 76
Query: 119 HVLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHP 178
H +++ K L + P++++GIH++N + + ++KPF+ + + +H H
Sbjct: 77 HAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHG 136
Query: 179 EGDISSVYEFVPPKCIPGGDLKGDLPDSKTLHNEYVEWMKNLVEFFLQDEK 229
+ P +P + G+ + + E+ ++ ++ +
Sbjct: 137 -NNYKQSLLQHFPDILP-LEYGGEEFSMEDICQEWTNFIMKSEDYLSSISE 185
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF),
middle domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 199
Score = 70.1 bits (171), Expect = 2e-15
Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 15/160 (9%)
Query: 63 QGYQVIFHRLQQFEPSK------------YVFQDSVRLLAMSIDACLHVEGTVPGYIFLF 110
G V + + + ++ LL + V ++
Sbjct: 19 DGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIY 78
Query: 111 DMAGVRLGHVLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKDL 170
D G+ L H+ + +V +F +E P LK + ++ L ++KPF+ +D
Sbjct: 79 DCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDT 138
Query: 171 LSLVHFHPEGDISSVYEFVPPKCIP---GGDLKGDLPDSK 207
+ + + + P +P GG + + K
Sbjct: 139 RKKIMVLGANWKEVLLKHISPDQVPVEYGGTMTDPDGNPK 178
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of
phosphatidylinositol transfer protein sec14p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 203
Score = 60.9 bits (147), Expect = 6e-12
Identities = 26/170 (15%), Positives = 54/170 (31%), Gaps = 17/170 (10%)
Query: 63 QGYQVIFHRLQQFEPS------------KYVFQDSVRLLAMSIDACLHVEGT-VPGYIFL 109
G V F L K + + ++ + AC G V +
Sbjct: 21 DGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTI 80
Query: 110 FDMAGVRLGHVLRLSVGQLSKFFLYLQEGLPVRLKGIHILNTRPLIDKIMFVVKPFMKKD 169
D+ G+ + + + + + Q P R+ +I+N + KPF+
Sbjct: 81 MDLKGISISSAYSV-MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPV 139
Query: 170 LLSLVHFHPEGDISSVYEFVPPKCIP---GGDLKGDLPDSKTLHNEYVEW 216
+S + + + +P + +P GG + D ++ W
Sbjct: 140 TVSKIFILGSSYQKELLKQIPAENLPVKFGGKSEVDESKGGLYLSDIGPW 189
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 32.0 bits (73), Expect = 0.008
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 8 HSCYFDLEASKSCIEVYFTTRTNTPEFFSKRD 39
+ FDL+ + ++ Y+ R PE +
Sbjct: 33 RARDFDLDLAWRLLKNYYKWRAECPEISADLH 64
>d1g03a_ a.73.1.1 (A:) HTLV-I capsid protein {Human T-cell
leukemia virus type 1 [TaxId: 11908]}
Length = 134
Score = 33.1 bits (75), Expect = 0.012
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 53 EFGAIAPKTPQGYQVIFHRLQQFEPSKYVFQDSVRLLAMSIDACLH 98
E AP +PQ Q I +QQF+P+ QD ++ L S+ A LH
Sbjct: 26 EVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLH 71
>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 164
Score = 26.2 bits (57), Expect = 3.5
Identities = 10/82 (12%), Positives = 22/82 (26%), Gaps = 9/82 (10%)
Query: 2 TLILIHHSCYFDLEASKSCIEVYFTTRTNTPEFFSKRDINRPELLAQSKVVEFGAIAPKT 61
++ + S +++ + T F + + L + V +
Sbjct: 81 FPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQ 140
Query: 62 ---------PQGYQVIFHRLQQ 74
PQG + L Q
Sbjct: 141 FNITRLIMRPQGVGAALYLLNQ 162
>d1yqfa1 d.25.1.1 (A:14-195) Hypothetical protein Lmaj011689
{Leishmania major [TaxId: 5664]}
Length = 182
Score = 25.6 bits (56), Expect = 4.8
Identities = 3/15 (20%), Positives = 7/15 (46%)
Query: 210 HNEYVEWMKNLVEFF 224
+Y W+ + +F
Sbjct: 167 QQDYEAWLTTMNKFA 181
>d2hqva1 e.62.1.2 (A:11-186) Hypothetical protein AGR_C_4470p
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 25.2 bits (55), Expect = 6.7
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 145 GIHILNTRPLIDKIMFVVKPFMKKDLLSLVHFHPEGDI 182
G HI I FV + F + S+ + G
Sbjct: 111 GGHIKKDN--CAAITFVDRGFHGRRSCSVWFMNAAGGA 146
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 25.3 bits (54), Expect = 8.5
Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 154 LIDKIMFVVKPFMKKDLLSLVHFHPEGDISSVYEFVPPKCIPGGDLKGDLPDSKTLHNEY 213
++D+ V + F +L L + + +S ++ + G PD +
Sbjct: 250 VVDEEQDVERHFSLGELRELFSLNEK-TLSDTHDRFRCRRCVNGRQVRPPPDDSDCTCDL 308
Query: 214 VEWMKNLVEFFLQDE 228
W + L+D
Sbjct: 309 SNWHHCADKRGLRDP 323
>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 288
Score = 25.2 bits (54), Expect = 8.5
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 25/96 (26%)
Query: 156 DKIMFVVKPFMKKDLLSLVHFHPEGDISSVYEFVPPKCIPGGDLKGDLPDSKTLH-NEYV 214
KI F+ K + V +HPE + YE+ I H V
Sbjct: 193 GKIEFISTMEGYKYPVYGVQWHPE---KAPYEWKNLDGIS--------------HAPNAV 235
Query: 215 EWMKNLVEFFLQDEKYQVDESKRVKNKKSAAKQLEK 250
+ L EFF V+E+++ + + + EK
Sbjct: 236 KTAFYLAEFF-------VNEARKNNHHFKSESEEEK 264
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.413
Gapped
Lambda K H
0.267 0.0631 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 968,391
Number of extensions: 45844
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 13
Length of query: 261
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 177
Effective length of database: 1,254,276
Effective search space: 222006852
Effective search space used: 222006852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.0 bits)