BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4448
(487 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XIO|A Chain A, Structure Of Putative Deoxyribonuclease Tatdn1 Isoform A
Length = 301
Score = 251 bits (640), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 129/265 (48%), Positives = 173/265 (65%), Gaps = 18/265 (6%)
Query: 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLK 60
MK+IDIG NL D M+ G Y QKH+ D+ V+ RA G++K ++TG N++DS +L
Sbjct: 1 MKFIDIGINLTDPMFRGIYRGV-QKHQDDLQDVIGRAVEIGVKKFMITGGNLQDSKDALH 59
Query: 61 LAQSDERLYSTVGCHPTRCSEFE-NDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQY 119
LAQ++ +STVGCHPTRC EFE N+P+ YL+ L + + KVVA GE GLD+DR+Q+
Sbjct: 60 LAQTNGMFFSTVGCHPTRCGEFEKNNPDLYLKELLNLAENNKGKVVAIGECGLDFDRLQF 119
Query: 120 CPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPF 179
CP +TQLKYF KQ +LS KLP+FLHCRN+ ++F++I K + GV+HSFDGT
Sbjct: 120 CPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDITKRNRDRCV-GGVVHSFDGTKE 178
Query: 180 QAVD-------------SLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQ 226
A SLKT+ NLE +KSIP ++L++ETD PWC VK +HAG YIRT
Sbjct: 179 AAAALIDLDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIRTA 238
Query: 227 HEKVKKEQWKPDKMVKSRNEPANIV 251
KK W+ +K RNEP +I+
Sbjct: 239 FPTKKK--WESGHCLKDRNEPCHII 261
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 106/168 (63%), Gaps = 16/168 (9%)
Query: 252 YFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVD---- 307
YF KQ +LS KLP+FLHCRN+ ++F++I K + GV+HSFDGT A
Sbjct: 128 YFEKQFELSEQTKLPMFLHCRNSHAEFLDITKRNRDRCV-GGVVHSFDGTKEAAAALIDL 186
Query: 308 ---------SLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQ 358
SLKT+ NLE +KSIP ++L++ETD PWC VK +HAG YIRT KK
Sbjct: 187 DLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIRTAFPTKKK-- 244
Query: 359 WKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLFFP 406
W+ +K RNEP +I+QILEI++AVR + +L ++ NT+++FFP
Sbjct: 245 WESGHCLKDRNEPCHIIQILEIMSAVRDEDPLELANTLYNNTIKVFFP 292
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
Query: 429 LYSTVGCHPTRCSEFE-NDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQL 487
+STVGCHPTRC EFE N+P+ YL+ L + + KVVA GE GLD+DR+Q+CP +TQL
Sbjct: 67 FFSTVGCHPTRCGEFEKNNPDLYLKELLNLAENNKGKVVAIGECGLDFDRLQFCPKDTQL 126
>pdb|3IPW|A Chain A, Crystal Structure Of Hydrolase Tatd Family Protein From
Entamoeba Histolytica
Length = 325
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/272 (40%), Positives = 158/272 (58%), Gaps = 29/272 (10%)
Query: 2 KYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKL 61
++IDIGANL D Y G Y K+ HE DID VL RA GL II+T + D ++++
Sbjct: 27 QFIDIGANLTDDNYFGNYHGKHY-HEEDIDVVLQRAERNGLSHIIITSGCLNDFKKAIEI 85
Query: 62 AQ-----SDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDR 116
++ +L +T+G HPTR +E + EGYL L + ++ KVVA GE GLDY+R
Sbjct: 86 INKYQNLTNIKLVTTIGVHPTRTNELK--QEGYLDELLLLCEKNIDKVVAIGEIGLDYER 143
Query: 117 VQYCPVETQLKYFRKQLDLSVTHK----LPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIH 172
+Q+ ETQL +R LS+ H+ LP F HCR + SD ++ KE KGV+H
Sbjct: 144 LQFSDKETQLSGYRT---LSILHQKYPYLPFFFHCRKSWSDLCQLNKELGYN-GCKGVVH 199
Query: 173 SFDGTPFQ-------------AVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAG 219
FDGT + +SL++ E L +K IP +RL +ETDCP+C +K + AG
Sbjct: 200 CFDGTEEEMNQILNEGWDIGVTGNSLQSIELLNVMKQIPIERLHIETDCPYCGIKKTSAG 259
Query: 220 FAYIRTQHEKVKKEQWKPDKMVKSRNEPANIV 251
F Y++ + VK E+++ +K V+ RNEP+NI+
Sbjct: 260 FKYLKEKDFGVKVEKYQRNKYVQRRNEPSNII 291
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 96/165 (58%), Gaps = 18/165 (10%)
Query: 259 LSVTHK----LPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQ---------- 304
LS+ H+ LP F HCR + SD ++ KE KGV+H FDGT +
Sbjct: 159 LSILHQKYPYLPFFFHCRKSWSDLCQLNKELGYN-GCKGVVHCFDGTEEEMNQILNEGWD 217
Query: 305 ---AVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKP 361
+SL++ E L +K IP +RL +ETDCP+C +K + AGF Y++ + VK E+++
Sbjct: 218 IGVTGNSLQSIELLNVMKQIPIERLHIETDCPYCGIKKTSAGFKYLKEKDFGVKVEKYQR 277
Query: 362 DKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLFFP 406
+K V+ RNEP+NI+ I I+++++ + + ++ N++ ++FP
Sbjct: 278 NKYVQRRNEPSNIIDIAIIMSSIKHISLFEFVNKVYSNSMNMYFP 322
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 428 RLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQL 487
+L +T+G HPTR +E + EGYL L + ++ KVVA GE GLDY+R+Q+ ETQL
Sbjct: 96 KLVTTIGVHPTRTNELK--QEGYLDELLLLCEKNIDKVVAIGEIGLDYERLQFSDKETQL 153
>pdb|3E2V|A Chain A, Crystal Structure Of An Uncharacterized Amidohydrolase
From Saccharomyces Cerevisiae
pdb|3E2V|B Chain B, Crystal Structure Of An Uncharacterized Amidohydrolase
From Saccharomyces Cerevisiae
Length = 401
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 116/352 (32%), Positives = 162/352 (46%), Gaps = 103/352 (29%)
Query: 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLK 60
+KY DIG NL D M+ G Y+ K Q H D +L RA ++ +VTG+++ +S S+++
Sbjct: 12 LKYYDIGLNLTDPMFHGIYNGK-QYHPADYVKLLERAAQRHVKNALVTGSSIAESQSAIE 70
Query: 61 LAQSDE-----RLYSTVGCHPTRCSEFENDPEG---------------YLQSL-DKIIK- 98
L S + +LY T+G HP +EF + +G Y +SL K+I
Sbjct: 71 LVSSVKDLSPLKLYHTIGVHPCCVNEFADASQGDKASASIDNPSMDEAYNESLYAKVISN 130
Query: 99 ----EGGKKVV----------------AFGEFGLDYDRVQYCPVETQLKYFRKQLDLS-V 137
+G K + + GE GLDYDR Y E Q +F +QL +S +
Sbjct: 131 PSFAQGKLKELYDLMNQQAKPHDTSFRSIGEIGLDYDRFHYSSKEMQKVFFEEQLKISCL 190
Query: 138 THKL---PLFLHCRNAKSDFIEIMKEYAPKLP-------------------------RKG 169
KL PLFLH R+A DF++I++ + RK
Sbjct: 191 NDKLSSYPLFLHMRSACDDFVQILERFVVGFTDEKDTFQLQKLGASSSSGFYKFHPDRKL 250
Query: 170 VIHSFDGTP-------------FQAVD--SLKTKENLETVKSIPEDRLLLETDCPWCEVK 214
V+HSF G+ F V+ SL+T+ENL VK IP +RLLLETD PWCE+K
Sbjct: 251 VVHSFTGSAIDLQKLLNLSPNIFIGVNGCSLRTEENLAVVKQIPTERLLLETDAPWCEIK 310
Query: 215 PSHAGFAYIRTQHE---------KVKKEQWKPDK-------MVKSRNEPANI 250
+HA F Y+ E K K+ DK MVK RNEP N+
Sbjct: 311 RTHASFQYLAKYQEVRDFEYPAFKSVKKNKLADKLNAEELYMVKGRNEPCNM 362
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 101/214 (47%), Gaps = 60/214 (28%)
Query: 251 VYFRKQLDLS-VTHKL---PLFLHCRNAKSDFIEIMKEYAPKLP---------------- 290
V+F +QL +S + KL PLFLH R+A DF++I++ +
Sbjct: 179 VFFEEQLKISCLNDKLSSYPLFLHMRSACDDFVQILERFVVGFTDEKDTFQLQKLGASSS 238
Query: 291 ---------RKGVIHSFDGTP-------------FQAVD--SLKTKENLETVKSIPEDRL 326
RK V+HSF G+ F V+ SL+T+ENL VK IP +RL
Sbjct: 239 SGFYKFHPDRKLVVHSFTGSAIDLQKLLNLSPNIFIGVNGCSLRTEENLAVVKQIPTERL 298
Query: 327 LLETDCPWCEVKPSHAGFAYIRTQHE---------KVKKEQWKPDK-------MVKSRNE 370
LLETD PWCE+K +HA F Y+ E K K+ DK MVK RNE
Sbjct: 299 LLETDAPWCEIKRTHASFQYLAKYQEVRDFEYPAFKSVKKNKLADKLNAEELYMVKGRNE 358
Query: 371 PANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
P N+ Q+ +V+ V+ V+ L + T ++F
Sbjct: 359 PCNMEQVAIVVSEVKDVDLATLIDTTWKTTCKIF 392
>pdb|1XWY|A Chain A, Crystal Structure Of Tatd Deoxyribonuclease From
Escherichia Coli K12 At 2.0 A Resolution
Length = 264
Score = 101 bits (252), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 114/226 (50%), Gaps = 36/226 (15%)
Query: 2 KYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKL 61
+ DIG NL + + D D V+ A++AG+ +++TGTN+ +S + KL
Sbjct: 4 RMFDIGVNLTSSQFA-----------KDRDDVVACAFDAGVNGLLITGTNLRESQQAQKL 52
Query: 62 AQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGK-KVVAFGEFGLDYDRVQYC 120
A+ +ST G HP S+++ E + II+ + +VVA GE GLD++R
Sbjct: 53 ARQYSSCWSTAGVHPHDSSQWQAATE------EAIIELAAQPEVVAIGECGLDFNRNFST 106
Query: 121 PVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGT--P 178
P E Q + F QL ++ +P+F+HCR+A F+ +++ + KLP V+H F GT
Sbjct: 107 P-EEQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLP-GAVLHCFTGTREE 164
Query: 179 FQA--------------VDSLKTKENLETVKSIPEDRLLLETDCPW 210
QA D + E E + IP ++LL+ETD P+
Sbjct: 165 MQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPY 210
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 73/171 (42%), Gaps = 43/171 (25%)
Query: 253 FRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGT--PFQA----- 305
F QL ++ +P+F+HCR+A F+ +++ + KLP V+H F GT QA
Sbjct: 114 FVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLP-GAVLHCFTGTREEMQACVAHG 172
Query: 306 ---------VDSLKTKENLETVKSIPEDRLLLETDCPWC---EVKPSHAGFAYIRTQHEK 353
D + E E + IP ++LL+ETD P+ ++ P
Sbjct: 173 IYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTP-------------- 218
Query: 354 VKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
KP RNEPA++ IL+ +A RG + L N LF
Sbjct: 219 ------KPS---SRRNEPAHLPHILQRIAHWRGEDAAWLAATTDANVKTLF 260
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 430 YSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGK-KVVAFGEFGLDYDRVQYCPVETQ 486
+ST G HP S+++ E + II+ + +VVA GE GLD++R P E +
Sbjct: 60 WSTAGVHPHDSSQWQAATE------EAIIELAAQPEVVAIGECGLDFNRNFSTPEEQE 111
>pdb|1J6O|A Chain A, Crystal Structure Of Tatd-related Deoxyribonuclease
(tm0667) From Thermotoga Maritima At 1.8 A Resolution
Length = 268
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 30/206 (14%)
Query: 29 DIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDPEG 88
D + V++ +E ++ G N+EDS SL L+++ +R++ +VG HP E PE
Sbjct: 28 DRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTSDRIFCSVGVHPHDAKEV---PED 84
Query: 89 YLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCR 148
+++ L+K K+ +KVVA GE GLD+ R P E Q + F +Q++L+ LPL +H R
Sbjct: 85 FIEHLEKFAKD--EKVVAIGETGLDFFR-NISPAEVQKRVFVEQIELAGKLNLPLVVHIR 141
Query: 149 NAKSDFIEIMKEYAPKLP-RKGVIHSFD------------------GTPFQAVDSLKTKE 189
+A S+ EI++ LP ++GVIH+F G P V K +
Sbjct: 142 DAYSEAYEILR--TESLPEKRGVIHAFSSDYEWAKKFIDLGFLLGIGGP---VTYPKNEA 196
Query: 190 NLETVKSIPEDRLLLETDCPWCEVKP 215
E VK + + ++LETDCP+ +P
Sbjct: 197 LREVVKRVGLEYIVLETDCPFLPPQP 222
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 48/172 (27%)
Query: 253 FRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLP-RKGVIHSFD------------ 299
F +Q++L+ LPL +H R+A S+ EI++ LP ++GVIH+F
Sbjct: 122 FVEQIELAGKLNLPLVVHIRDAYSEAYEILR--TESLPEKRGVIHAFSSDYEWAKKFIDL 179
Query: 300 ------GTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEK 353
G P V K + E VK + + ++LETDCP+ +P
Sbjct: 180 GFLLGIGGP---VTYPKNEALREVVKRVGLEYIVLETDCPFLPPQPFRG----------- 225
Query: 354 VKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLFF 405
RNEP + ++E ++ V GV K+ +N R+F
Sbjct: 226 -------------KRNEPKYLKYVVETISQVLGVPEAKVDEATTENARRIFL 264
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 427 ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQ 486
+R++ +VG HP E PE +++ L+K K+ +KVVA GE GLD+ R P E Q
Sbjct: 65 DRIFCSVGVHPHDAKEV---PEDFIEHLEKFAKD--EKVVAIGETGLDFFR-NISPAEVQ 118
>pdb|2GZX|A Chain A, Crystal Structure Of The Tatd Deoxyribonuclease Mw0446
From Staphylococcus Aureus. Northeast Structural
Genomics Consortium Target Zr237.
pdb|2GZX|B Chain B, Crystal Structure Of The Tatd Deoxyribonuclease Mw0446
From Staphylococcus Aureus. Northeast Structural
Genomics Consortium Target Zr237
Length = 265
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 27/211 (12%)
Query: 23 NQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCSEF 82
+++++ D+ V+ RA AG+++ V G N + KL + LY +G HP +F
Sbjct: 11 DEQYDDDLSEVITRAREAGVDRXFVVGFNKSTIERAXKLIDEYDFLYGIIGWHPVDAIDF 70
Query: 83 ENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLP 142
+ +++SL + KV+ GE GLDY P + Q + FRKQ+ L+ KLP
Sbjct: 71 TEEHLEWIESLAQ-----HPKVIGIGEXGLDY-HWDKSPADVQKEVFRKQIALAKRLKLP 124
Query: 143 LFLHCRNAKSDFIEI-MKEYAPKLPRKGVIHSFDGTPFQAVDSLKTKENL---------- 191
+ +H R A D I+I ++E+A ++ G+ HSF G+P + D + K N
Sbjct: 125 IIIHNREATQDCIDILLEEHAEEV--GGIXHSFSGSP-EIADIVTNKLNFYISLGGPVTF 181
Query: 192 -------ETVKSIPEDRLLLETDCPWCEVKP 215
E K + +RLL+ETD P+ P
Sbjct: 182 KNAKQPKEVAKHVSXERLLVETDAPYLSPHP 212
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 45/170 (26%)
Query: 253 FRKQLDLSVTHKLPLFLHCRNAKSDFIEI-MKEYAPKLPRKGVIHSFDGTPFQAVDSLKT 311
FRKQ+ L+ KLP+ +H R A D I+I ++E+A ++ G+ HSF G+P + D +
Sbjct: 111 FRKQIALAKRLKLPIIIHNREATQDCIDILLEEHAEEV--GGIXHSFSGSP-EIADIVTN 167
Query: 312 KENL-----------------ETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKV 354
K N E K + +RLL+ETD P+ P
Sbjct: 168 KLNFYISLGGPVTFKNAKQPKEVAKHVSXERLLVETDAPYLSPHPYRG------------ 215
Query: 355 KKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
RNEPA + + E +A ++G+ E++ +N +LF
Sbjct: 216 ------------KRNEPARVTLVAEQIAELKGLSYEEVCEQTTKNAEKLF 253
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 425 EIERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDY 475
E + LY +G HP +F + +++SL + KV+ GE GLDY
Sbjct: 52 EYDFLYGIIGWHPVDAIDFTEEHLEWIESLAQ-----HPKVIGIGEXGLDY 97
>pdb|3RCM|A Chain A, Crystal Structure Of Efi Target 500140:tatd Family
Hydrolase From Pseudomonas Putida
Length = 287
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 108/229 (47%), Gaps = 38/229 (16%)
Query: 2 KYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKL 61
+ IDIG NL ++ + ++ ++ RA AG+ + ++TGT++ S +L+L
Sbjct: 2 QLIDIGVNLTNSSFHDQQAA-----------IVERALEAGVTQXLLTGTSLAVSEQALEL 50
Query: 62 AQ----SDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRV 117
Q S L++T G HP ++ D E + L ++ E +V A GE GLD++R
Sbjct: 51 CQQLDASGAHLFATAGVHPHDAKAWDTDSE---RQLRLLLSE--PRVRAVGECGLDFNR- 104
Query: 118 QYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDG- 176
+ P Q K QL L+ +LP+FLH R+A + I+K+Y L V+H F G
Sbjct: 105 DFSPRPLQEKALEAQLTLAAQLRLPVFLHERDASERLLAILKDYRDHLT-GAVVHCFTGE 163
Query: 177 --TPFQAVD-------------SLKTKENLETVKSIPEDRLLLETDCPW 210
F +D + V +IPE RL LE+D P+
Sbjct: 164 REALFAYLDLDLHIGITGWICDERRGTHLHPLVGNIPEGRLXLESDAPY 212
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 60/147 (40%), Gaps = 37/147 (25%)
Query: 256 QLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDG---TPFQAVD----- 307
QL L+ +LP+FLH R+A + I+K+Y L V+H F G F +D
Sbjct: 119 QLTLAAQLRLPVFLHERDASERLLAILKDYRDHLT-GAVVHCFTGEREALFAYLDLDLHI 177
Query: 308 --------SLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQW 359
+ V +IPE RL LE+D P+ +
Sbjct: 178 GITGWICDERRGTHLHPLVGNIPEGRLXLESDAPY-------------------LLPRSL 218
Query: 360 KPDKMVKSRNEPANIVQILEIVAAVRG 386
+P K RNEPA + ++L VA RG
Sbjct: 219 RP-KPKSGRNEPAFLPEVLREVALHRG 244
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 429 LYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDR 477
L++T G HP ++ D E + L ++ E +V A GE GLD++R
Sbjct: 61 LFATAGVHPHDAKAWDTDSE---RQLRLLLSE--PRVRAVGECGLDFNR 104
>pdb|1ZZM|A Chain A, Crystal Structure Of Yjjv, Tatd Homolog From Escherichia
Coli K12, At 1.8 A Resolution
Length = 259
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 91/198 (45%), Gaps = 25/198 (12%)
Query: 29 DIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDPEG 88
D + L RA AG+ KIIV T E+ L LA++ + LY+ +G HP E +
Sbjct: 20 DEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPLYAALGLHP---GMLEKHSDV 76
Query: 89 YLQSLDKIIKEGGKKVVAFGEFGLDY--DRVQYCPVETQLKYFRKQLDLSVTHKLPLFLH 146
L+ L + ++ KVVA GE GLD D Q+ E Q +QL L+ + LP+ LH
Sbjct: 77 SLEQLQQALERRPAKVVAVGEIGLDLFGDDPQF---ERQQWLLDEQLKLAKRYDLPVILH 133
Query: 147 CRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQA---------------VDSLKTKENL 191
R +K + LPR GV+H F G+ QA + + +
Sbjct: 134 SRRTHDKLAMHLKRH--DLPRTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPRASKTR 191
Query: 192 ETVKSIPEDRLLLETDCP 209
+ + +P LLLETD P
Sbjct: 192 DVIAKLPLASLLLETDAP 209
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 255 KQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQA--------- 305
+QL L+ + LP+ LH R +K + LPR GV+H F G+ QA
Sbjct: 118 EQLKLAKRYDLPVILHSRRTHDKLAMHLKRH--DLPRTGVVHGFSGSLQQAERFVQLGYK 175
Query: 306 ------VDSLKTKENLETVKSIPEDRLLLETDCP 333
+ + + + + +P LLLETD P
Sbjct: 176 IGVGGTITYPRASKTRDVIAKLPLASLLLETDAP 209
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 429 LYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLD 474
LY+ +G HP E + L+ L + ++ KVVA GE GLD
Sbjct: 59 LYAALGLHP---GMLEKHSDVSLEQLQQALERRPAKVVAVGEIGLD 101
>pdb|1YIX|A Chain A, Crystal Structure Of Ycfh, Tatd Homolog From Escherichia
Coli K12, At 1.9 A Resolution
pdb|1YIX|B Chain B, Crystal Structure Of Ycfh, Tatd Homolog From Escherichia
Coli K12, At 1.9 A Resolution
Length = 265
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 31/209 (14%)
Query: 29 DIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDPEG 88
D+D VL +A ++ + T + + L + + + G HP +NDP
Sbjct: 21 DVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERDNVVFSCGVHPLN----QNDPYD 76
Query: 89 YLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKY---FRKQLDLSVTHKLPLFL 145
++ L ++ E G VVA GE GLDY Y P ET+++ F + + P+ +
Sbjct: 77 -VEDLRRLAAEEG--VVALGETGLDY---YYTP-ETKVRQQESFIHHIQIGRELNKPVIV 129
Query: 146 HCRNAKSDFIEIMKEYAPKLPRKGVIHSFDG--------------TPFQAVDSLKTKENL 191
H R+A++D + I++E GV+H F F + + + E L
Sbjct: 130 HTRDARADTLAILRE-EKVTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNAEQL 188
Query: 192 -ETVKSIPEDRLLLETDCPWCEVKPSHAG 219
+ + +P DRLL+ETD P+ P H G
Sbjct: 189 RDAARYVPLDRLLVETDSPYLAPVP-HRG 216
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 40/154 (25%)
Query: 266 PLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDG--------------TPFQAVDSLKT 311
P+ +H R+A++D + I++E GV+H F F + + +
Sbjct: 126 PVIVHTRDARADTLAILRE-EKVTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRN 184
Query: 312 KENL-ETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNE 370
E L + + +P DRLL+ETD P+ P H G N+
Sbjct: 185 AEQLRDAARYVPLDRLLVETDSPYLAPVP-HRG-----------------------KENQ 220
Query: 371 PANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
PA + + E +A ++GV E+L + N RLF
Sbjct: 221 PAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLF 254
>pdb|2Y1H|A Chain A, Crystal Structure Of The Human Tatd-Domain Protein 3
(Tatdn3)
pdb|2Y1H|B Chain B, Crystal Structure Of The Human Tatd-Domain Protein 3
(Tatdn3)
Length = 272
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 42/163 (25%)
Query: 255 KQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDS------ 308
+Q+ L+ LP+ +H R+A I +++E + K ++H+FDG P A++
Sbjct: 130 RQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAE---KVLLHAFDGRPSVAMEGVRAGYF 186
Query: 309 -------LKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKP 361
+++ + + VK +P + LETD P P
Sbjct: 187 FSIPPSIIRSGQKQKLVKQLPLTSICLETDSPA------------------------LGP 222
Query: 362 DKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
+K V RNEP NI E +A V+G+ E++ + QN L+LF
Sbjct: 223 EKQV--RNEPWNISISAEYIAQVKGISVEEVIEVTTQNALKLF 263
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 28/174 (16%)
Query: 60 KLAQSDER----LYSTVGCHPTRCSEFENDPEGYLQSLD---KIIKEGGKKVVAFGEFGL 112
K+ Q ER + +G HP + E+ L+ LD II+ +++A GE GL
Sbjct: 49 KIMQLSERYNGFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGL 108
Query: 113 DYDRVQYCPV----ETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRK 168
D+ ++ E Q + +Q+ L+ LP+ +H R+A I +++E + K
Sbjct: 109 DFSP-RFAGTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAE---K 164
Query: 169 GVIHSFDGTPFQAVDS-------------LKTKENLETVKSIPEDRLLLETDCP 209
++H+FDG P A++ +++ + + VK +P + LETD P
Sbjct: 165 VLLHAFDGRPSVAMEGVRAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSP 218
>pdb|3GG7|A Chain A, Crystal Structure Of An Uncharacterized Metalloprotein
From Deinococcus Radiodurans
Length = 254
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 57 SSLKLAQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDR 116
+L LA +++ +G HP SE D L D+ + E + V GE GLD
Sbjct: 42 GTLALAAGRPHVWTALGFHPEVVSERAAD----LPWFDRYLPE--TRFV--GEVGLDGSP 93
Query: 117 VQYCPVETQLKYFRKQLDLSVTHKLPLF-LHCRNAKSDFIEIMKEYAPKLPRKG--VIHS 173
Q F+ L H + +H R A+S+ + ++ PR G ++H
Sbjct: 94 SLRGTWTQQFAVFQHILRRCEDHGGRILSIHSRRAESEVLNCLEAN----PRSGTPILHW 149
Query: 174 FDG--TPFQAVDSL-----------KTKENLETVKSIPEDRLLLETDCPWCEV 213
+ G T + SL +T++ ++S+P DR+L ETD P+ E+
Sbjct: 150 YSGSVTELRRAISLGCWFSVGPTMVRTQKGAALIRSMPRDRVLTETDGPFLEL 202
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 19/86 (22%)
Query: 267 LFLHCRNAKSDFIEIMKEYAPKLPRKG--VIHSFDG--TPFQAVDSL-----------KT 311
L +H R A+S+ + ++ PR G ++H + G T + SL +T
Sbjct: 121 LSIHSRRAESEVLNCLEAN----PRSGTPILHWYSGSVTELRRAISLGCWFSVGPTMVRT 176
Query: 312 KENLETVKSIPEDRLLLETDCPWCEV 337
++ ++S+P DR+L ETD P+ E+
Sbjct: 177 QKGAALIRSMPRDRVLTETDGPFLEL 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,331,667
Number of Sequences: 62578
Number of extensions: 667798
Number of successful extensions: 1525
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1430
Number of HSP's gapped (non-prelim): 42
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)