Query psy4448
Match_columns 487
No_of_seqs 338 out of 1959
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 17:16:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0084 TatD Mg-dependent DNas 100.0 9E-65 2E-69 499.2 30.0 255 1-406 1-256 (256)
2 PRK10425 DNase TatD; Provision 100.0 1.6E-59 3.4E-64 465.4 29.3 257 3-406 1-258 (258)
3 PRK11449 putative deoxyribonuc 100.0 9.1E-59 2E-63 460.2 31.0 255 1-406 3-258 (258)
4 PRK10812 putative DNAse; Provi 100.0 8.8E-59 1.9E-63 461.9 30.3 256 1-407 1-257 (265)
5 PF01026 TatD_DNase: TatD rela 100.0 2.9E-55 6.3E-60 434.4 24.0 253 4-405 1-255 (255)
6 KOG3020|consensus 100.0 3.7E-53 8E-58 419.8 25.5 275 2-406 17-296 (296)
7 TIGR00010 hydrolase, TatD fami 100.0 2.8E-40 6E-45 323.5 28.6 251 3-406 1-252 (252)
8 cd01310 TatD_DNAse TatD like p 100.0 8.6E-39 1.9E-43 312.4 29.0 250 3-405 1-251 (251)
9 cd00530 PTE Phosphotriesterase 100.0 1.4E-30 3.1E-35 261.9 23.4 234 32-404 36-293 (293)
10 COG1099 Predicted metal-depend 99.9 9.2E-26 2E-30 212.9 20.5 233 2-407 1-254 (254)
11 TIGR03583 EF_0837 probable ami 99.9 1.7E-20 3.7E-25 194.9 21.7 232 3-407 52-313 (365)
12 COG1831 Predicted metal-depend 99.7 1.8E-15 3.9E-20 147.0 20.7 161 1-177 5-198 (285)
13 cd01295 AdeC Adenine deaminase 99.6 1.7E-14 3.6E-19 153.2 21.3 154 3-187 11-175 (422)
14 cd01307 Met_dep_hydrolase_B Me 99.4 1.5E-11 3.4E-16 126.6 22.5 151 3-178 36-197 (338)
15 COG0084 TatD Mg-dependent DNas 99.4 3.2E-13 6.9E-18 133.7 6.0 71 234-306 91-165 (256)
16 KOG3020|consensus 99.3 1.6E-12 3.4E-17 130.1 5.7 92 234-331 114-209 (296)
17 PRK10425 DNase TatD; Provision 99.3 6.8E-12 1.5E-16 124.9 6.6 70 235-305 89-161 (258)
18 PRK11449 putative deoxyribonuc 99.2 1.4E-11 3.1E-16 122.6 5.4 69 235-305 95-166 (258)
19 PRK09237 dihydroorotase; Provi 99.2 4.3E-09 9.3E-14 110.1 23.1 157 3-179 55-217 (380)
20 cd01292 metallo-dependent_hydr 99.1 1E-09 2.2E-14 106.5 14.5 174 3-187 1-195 (275)
21 PRK10812 putative DNAse; Provi 99.1 1.2E-10 2.5E-15 116.5 6.7 69 235-304 92-163 (265)
22 PF01026 TatD_DNase: TatD rela 99.1 6.3E-11 1.4E-15 117.6 2.7 69 235-304 91-163 (255)
23 PRK09875 putative hydrolase; P 99.0 4.4E-08 9.5E-13 99.2 22.6 154 29-187 32-202 (292)
24 PF04909 Amidohydro_2: Amidohy 98.9 4.3E-08 9.3E-13 96.2 16.2 143 4-177 1-175 (273)
25 cd01311 PDC_hydrolase 2-pyrone 98.7 4.8E-06 1E-10 83.0 23.0 149 3-175 2-155 (263)
26 cd01310 TatD_DNAse TatD like p 98.0 1.3E-05 2.7E-10 78.2 6.7 55 245-301 102-156 (251)
27 COG2159 Predicted metal-depend 97.9 0.0026 5.7E-08 64.7 22.9 115 34-163 55-192 (293)
28 TIGR00010 hydrolase, TatD fami 97.9 1.4E-05 3E-10 78.2 6.1 54 246-301 103-156 (252)
29 PRK12394 putative metallo-depe 97.9 0.0044 9.5E-08 65.1 24.1 155 3-177 58-220 (379)
30 cd00530 PTE Phosphotriesterase 97.9 1.3E-05 2.8E-10 80.7 4.5 63 237-300 123-189 (293)
31 PF02126 PTE: Phosphotriestera 97.8 0.00033 7.2E-09 71.7 14.5 146 34-187 44-206 (308)
32 PRK10657 isoaspartyl dipeptida 97.8 0.0038 8.1E-08 65.4 22.1 37 372-408 308-344 (388)
33 cd01294 DHOase Dihydroorotase 97.8 0.0035 7.6E-08 64.6 21.5 121 3-150 6-136 (335)
34 TIGR01975 isoAsp_dipep isoaspa 97.8 0.0033 7.1E-08 66.5 21.3 151 3-177 58-224 (389)
35 cd01317 DHOase_IIa Dihydroorot 97.7 0.016 3.6E-07 60.6 25.5 120 3-150 16-143 (374)
36 TIGR01178 ade adenine deaminas 97.7 0.0064 1.4E-07 67.2 23.3 157 3-187 52-216 (552)
37 COG3618 Predicted metal-depend 97.6 0.0091 2E-07 59.9 20.1 155 1-173 7-169 (279)
38 cd01297 D-aminoacylase D-amino 97.5 0.019 4.2E-07 61.0 23.1 82 88-177 164-253 (415)
39 PRK07213 chlorohydrolase; Prov 97.5 0.047 1E-06 57.2 24.6 34 374-407 293-326 (375)
40 cd01315 L-HYD_ALN L-Hydantoina 97.4 0.041 8.9E-07 58.8 24.1 121 3-150 54-185 (447)
41 PLN02942 dihydropyrimidinase 97.4 0.1 2.3E-06 56.7 27.3 126 3-149 59-189 (486)
42 PLN02795 allantoinase 97.4 0.05 1.1E-06 59.5 24.7 127 3-151 101-236 (505)
43 COG3964 Predicted amidohydrola 97.4 0.0095 2.1E-07 60.1 16.4 143 3-178 59-220 (386)
44 TIGR03178 allantoinase allanto 97.3 0.071 1.5E-06 57.2 23.7 124 3-150 53-184 (443)
45 PRK07369 dihydroorotase; Provi 97.3 0.023 5.1E-07 60.6 19.9 118 3-149 59-184 (418)
46 cd01314 D-HYD D-hydantoinases 97.3 0.037 7.9E-07 59.2 21.4 139 3-161 53-195 (447)
47 cd01308 Isoaspartyl-dipeptidas 97.3 0.091 2E-06 55.0 23.9 28 380-407 315-342 (387)
48 TIGR02967 guan_deamin guanine 97.3 0.025 5.4E-07 59.6 19.7 144 35-188 97-261 (401)
49 PRK06189 allantoinase; Provisi 97.2 0.16 3.4E-06 54.7 25.3 120 3-149 56-186 (451)
50 cd01299 Met_dep_hydrolase_A Me 97.2 0.013 2.9E-07 60.0 16.2 147 33-187 47-214 (342)
51 PRK02382 dihydroorotase; Provi 97.2 0.074 1.6E-06 57.1 22.3 123 3-150 56-184 (443)
52 PRK09228 guanine deaminase; Pr 97.1 0.14 3.1E-06 54.8 23.4 117 35-161 122-246 (433)
53 cd01312 Met_dep_hydrolase_D Me 97.0 0.016 3.5E-07 61.0 15.3 65 123-187 159-252 (381)
54 cd01293 Bact_CD Bacterial cyto 97.0 0.018 4E-07 59.8 15.6 131 33-177 101-245 (398)
55 PRK08323 phenylhydantoinase; V 97.0 0.23 4.9E-06 53.3 23.9 128 3-149 51-182 (459)
56 cd01302 Cyclic_amidohydrolases 97.0 0.0099 2.2E-07 61.5 12.7 153 3-185 7-167 (337)
57 PRK08044 allantoinase; Provisi 96.9 0.24 5.2E-06 53.4 23.7 124 3-150 55-190 (449)
58 PRK13404 dihydropyrimidinase; 96.9 0.28 6E-06 53.3 24.3 129 3-150 56-189 (477)
59 COG1735 Php Predicted metal-de 96.9 0.1 2.2E-06 53.0 18.4 125 37-173 57-200 (316)
60 PRK09060 dihydroorotase; Valid 96.8 0.63 1.4E-05 50.1 25.6 53 3-64 58-116 (444)
61 PRK09236 dihydroorotase; Revie 96.8 1.1 2.3E-05 48.2 27.7 33 374-407 336-368 (444)
62 PRK08203 hydroxydechloroatrazi 96.7 0.2 4.2E-06 53.8 20.6 63 126-188 213-286 (451)
63 TIGR02033 D-hydantoinase D-hyd 96.6 0.32 6.8E-06 52.0 21.7 128 3-148 53-184 (454)
64 PRK08417 dihydroorotase; Provi 96.6 0.34 7.3E-06 51.1 21.5 115 3-150 32-153 (386)
65 PRK09061 D-glutamate deacylase 96.6 0.024 5.2E-07 62.1 12.9 76 88-175 166-255 (509)
66 PRK09059 dihydroorotase; Valid 96.6 1.5 3.2E-05 47.1 26.5 121 3-151 62-190 (429)
67 PRK10027 cryptic adenine deami 96.4 0.73 1.6E-05 51.5 23.3 128 3-154 86-222 (588)
68 PRK07583 cytosine deaminase-li 96.4 0.054 1.2E-06 58.0 14.0 126 32-177 126-268 (438)
69 PRK13206 ureC urease subunit a 96.4 0.35 7.5E-06 53.5 19.8 158 3-211 137-309 (573)
70 TIGR00856 pyrC_dimer dihydroor 96.3 0.67 1.5E-05 48.2 21.2 120 4-150 8-138 (341)
71 PRK06846 putative deaminase; V 96.3 0.11 2.5E-06 55.0 15.7 86 91-186 179-274 (410)
72 cd01309 Met_dep_hydrolase_C Me 96.3 0.49 1.1E-05 49.4 19.9 26 383-408 296-321 (359)
73 PRK08204 hypothetical protein; 96.3 0.11 2.4E-06 55.6 15.4 61 127-187 201-265 (449)
74 cd01298 ATZ_TRZ_like TRZ/ATZ f 96.3 0.1 2.3E-06 54.5 15.0 62 126-187 193-265 (411)
75 cd00375 Urease_alpha Urease al 96.3 0.028 6E-07 61.8 10.7 108 3-150 131-251 (567)
76 TIGR01792 urease_alph urease, 96.3 0.026 5.7E-07 62.2 10.6 157 3-211 130-302 (567)
77 PRK06380 metal-dependent hydro 96.2 0.3 6.4E-06 51.8 18.4 61 127-187 186-257 (418)
78 PRK07228 N-ethylammeline chlor 96.2 0.12 2.7E-06 55.1 15.6 62 126-187 198-270 (445)
79 cd00854 NagA N-acetylglucosami 96.2 0.22 4.8E-06 52.3 16.9 35 373-407 310-344 (374)
80 cd01303 GDEase Guanine deamina 96.2 0.27 5.8E-06 52.6 17.6 143 35-187 118-282 (429)
81 PRK08393 N-ethylammeline chlor 96.1 0.12 2.6E-06 55.1 14.6 62 126-187 188-260 (424)
82 cd01305 archeal_chlorohydrolas 96.1 0.11 2.3E-06 51.6 13.1 55 129-187 127-185 (263)
83 PRK13985 ureB urease subunit b 96.0 0.038 8.3E-07 60.6 10.4 154 3-211 131-303 (568)
84 PRK07203 putative chlorohydrol 95.9 0.36 7.8E-06 51.7 16.9 61 127-187 205-276 (442)
85 TIGR00857 pyrC_multi dihydroor 95.8 0.14 3.1E-06 54.4 13.6 121 3-149 41-169 (411)
86 PRK07627 dihydroorotase; Provi 95.7 3.6 7.7E-05 44.1 26.3 122 3-150 57-184 (425)
87 PRK13207 ureC urease subunit a 95.7 0.12 2.7E-06 57.0 12.7 108 3-150 131-251 (568)
88 PRK06038 N-ethylammeline chlor 95.7 0.26 5.6E-06 52.7 15.0 62 126-187 189-261 (430)
89 PRK05451 dihydroorotase; Provi 95.7 0.31 6.7E-06 50.7 15.1 118 3-149 10-140 (345)
90 PRK09045 N-ethylammeline chlor 95.6 0.8 1.7E-05 49.0 18.3 62 126-187 201-273 (443)
91 PRK06687 chlorohydrolase; Vali 95.6 0.74 1.6E-05 48.9 17.9 62 126-187 195-267 (419)
92 PRK00912 ribonuclease P protei 95.6 0.34 7.5E-06 47.5 14.2 36 1-48 1-36 (237)
93 PRK13309 ureC urease subunit a 95.5 0.28 6E-06 54.4 14.7 157 3-211 135-307 (572)
94 PRK13308 ureC urease subunit a 95.5 0.3 6.5E-06 53.9 14.6 157 3-211 135-303 (569)
95 COG1099 Predicted metal-depend 95.4 0.023 4.9E-07 55.2 4.8 48 235-284 100-152 (254)
96 COG0402 SsnA Cytosine deaminas 95.3 0.22 4.7E-06 53.1 12.7 80 125-207 196-286 (421)
97 PRK09357 pyrC dihydroorotase; 95.1 0.33 7.1E-06 51.6 13.5 120 3-150 55-182 (423)
98 PRK05985 cytosine deaminase; P 95.1 0.33 7.2E-06 51.0 13.3 126 34-175 104-245 (391)
99 COG1001 AdeC Adenine deaminase 95.1 2 4.3E-05 47.4 19.1 128 3-154 79-216 (584)
100 TIGR01224 hutI imidazoloneprop 95.0 4.3 9.4E-05 42.2 21.2 57 127-187 197-254 (377)
101 TIGR03314 Se_ssnA putative sel 94.8 1.3 2.8E-05 47.6 17.1 62 127-188 204-276 (441)
102 PRK07328 histidinol-phosphatas 94.7 1.7 3.6E-05 43.5 16.3 38 1-48 1-38 (269)
103 PRK07575 dihydroorotase; Provi 94.6 7.7 0.00017 41.6 24.0 145 244-407 205-362 (438)
104 PRK15493 5-methylthioadenosine 94.6 1.7 3.7E-05 46.6 17.2 61 127-187 197-268 (435)
105 PRK09248 putative hydrolase; V 94.5 4.9 0.00011 39.5 19.0 39 2-50 3-41 (246)
106 PRK09230 cytosine deaminase; P 94.4 2.6 5.6E-05 45.1 17.9 62 125-187 193-268 (426)
107 TIGR01430 aden_deam adenosine 94.3 7 0.00015 40.0 22.0 58 126-187 171-232 (324)
108 PLN02599 dihydroorotase 94.1 8.9 0.00019 40.4 21.5 118 4-149 29-158 (364)
109 PRK06886 hypothetical protein; 94.1 0.9 1.9E-05 47.1 13.2 131 34-177 75-218 (329)
110 TIGR03583 EF_0837 probable ami 93.8 0.078 1.7E-06 55.2 4.9 46 253-302 168-213 (365)
111 PRK07572 cytosine deaminase; V 93.7 0.77 1.7E-05 49.0 12.4 132 33-177 103-247 (426)
112 PRK12393 amidohydrolase; Provi 93.6 5.1 0.00011 43.2 18.5 62 126-187 217-289 (457)
113 cd01316 CAD_DHOase The eukaryo 93.5 11 0.00023 39.3 21.5 144 3-175 8-158 (344)
114 cd01320 ADA Adenosine deaminas 93.5 9.8 0.00021 38.8 22.0 58 126-187 172-233 (325)
115 TIGR02318 phosphono_phnM phosp 93.5 8.7 0.00019 40.5 19.6 23 385-407 318-340 (376)
116 PRK11170 nagA N-acetylglucosam 93.3 2.8 6E-05 44.4 15.5 38 370-407 309-346 (382)
117 cd01296 Imidazolone-5PH Imidaz 92.9 13 0.00028 38.5 21.7 58 126-187 192-250 (371)
118 cd01313 Met_dep_hydrolase_E Me 92.9 4.2 9.1E-05 43.3 16.4 61 126-187 206-277 (418)
119 cd01307 Met_dep_hydrolase_B Me 92.8 0.14 3E-06 52.8 4.8 124 253-407 151-297 (338)
120 PLN02303 urease 92.6 1 2.2E-05 51.8 11.6 163 3-211 400-572 (837)
121 TIGR00221 nagA N-acetylglucosa 92.6 1.1 2.3E-05 47.5 11.2 184 3-211 58-280 (380)
122 COG0044 PyrC Dihydroorotase an 92.5 1.3 2.9E-05 47.5 12.0 119 3-150 55-181 (430)
123 PRK08418 chlorohydrolase; Prov 91.7 3.1 6.7E-05 44.2 13.5 60 126-187 189-275 (408)
124 KOG2584|consensus 91.6 0.97 2.1E-05 48.0 9.1 50 235-284 217-268 (522)
125 PRK09229 N-formimino-L-glutama 91.2 8.4 0.00018 41.5 16.5 61 126-187 215-286 (456)
126 PRK08392 hypothetical protein; 90.8 13 0.00029 35.7 16.0 34 4-48 1-34 (215)
127 PRK14085 imidazolonepropionase 90.6 24 0.00053 36.9 19.0 25 383-407 320-344 (382)
128 PRK08609 hypothetical protein; 90.1 6.6 0.00014 43.8 14.7 198 3-283 335-567 (570)
129 cd01318 DHOase_IIb Dihydroorot 89.9 9.6 0.00021 39.9 15.0 53 3-64 8-66 (361)
130 PRK09358 adenosine deaminase; 89.2 29 0.00063 35.7 22.3 86 90-187 152-242 (340)
131 cd01304 FMDH_A Formylmethanofu 88.9 3.2 6.8E-05 45.9 10.8 53 125-177 207-275 (541)
132 TIGR02022 hutF formiminoglutam 88.5 23 0.00049 38.2 17.1 59 128-187 217-286 (455)
133 PRK15446 phosphonate metabolis 87.2 43 0.00093 35.3 20.6 32 377-408 314-345 (383)
134 TIGR01212 radical SAM protein, 82.7 43 0.00093 34.2 14.9 144 51-209 92-265 (302)
135 PRK09432 metF 5,10-methylenete 81.7 5.3 0.00011 40.8 7.8 102 28-144 97-208 (296)
136 PRK05588 histidinol-phosphatas 81.6 30 0.00064 34.2 12.9 33 3-45 1-33 (255)
137 cd00408 DHDPS-like Dihydrodipi 79.4 67 0.0015 32.0 14.8 139 29-187 19-172 (281)
138 PRK03620 5-dehydro-4-deoxygluc 79.0 43 0.00094 34.1 13.5 137 30-187 30-179 (303)
139 PRK08123 histidinol-phosphatas 79.0 4.9 0.00011 40.2 6.5 39 1-48 1-39 (270)
140 TIGR00677 fadh2_euk methylenet 79.0 15 0.00032 37.3 9.9 102 28-144 74-193 (281)
141 PRK07945 hypothetical protein; 78.3 76 0.0016 33.0 15.2 61 3-74 97-171 (335)
142 cd06533 Glyco_transf_WecG_TagA 77.9 60 0.0013 30.2 13.2 96 29-147 34-131 (171)
143 COG4464 CapC Capsular polysacc 77.3 2.3 5.1E-05 41.3 3.3 39 3-50 1-42 (254)
144 TIGR03249 KdgD 5-dehydro-4-deo 77.2 69 0.0015 32.4 14.3 136 29-187 27-177 (296)
145 PF02811 PHP: PHP domain; Int 76.3 7.6 0.00017 35.1 6.4 52 4-64 1-53 (175)
146 PRK13125 trpA tryptophan synth 76.3 82 0.0018 31.0 15.8 42 255-301 120-163 (244)
147 TIGR00433 bioB biotin syntheta 75.7 90 0.002 31.2 15.4 53 126-182 97-149 (296)
148 cd00537 MTHFR Methylenetetrahy 75.0 14 0.00031 36.9 8.5 102 28-144 73-192 (274)
149 TIGR01430 aden_deam adenosine 73.7 78 0.0017 32.3 13.8 138 38-211 121-276 (324)
150 smart00481 POLIIIAc DNA polyme 73.5 13 0.00028 28.6 6.2 52 5-65 1-53 (67)
151 COG0804 UreC Urea amidohydrola 73.4 18 0.00038 38.6 8.7 154 4-211 132-303 (568)
152 cd00951 KDGDH 5-dehydro-4-deox 73.0 89 0.0019 31.5 13.8 136 29-187 22-172 (289)
153 TIGR00676 fadh2 5,10-methylene 72.7 26 0.00056 35.2 9.7 49 29-77 74-135 (272)
154 PRK02308 uvsE putative UV dama 72.5 30 0.00066 35.4 10.3 27 123-149 126-156 (303)
155 PRK11148 cyclic 3',5'-adenosin 72.5 1.1E+02 0.0023 30.5 14.4 124 29-162 41-194 (275)
156 PF04909 Amidohydro_2: Amidohy 72.2 16 0.00036 35.2 8.0 130 69-212 99-237 (273)
157 PRK09237 dihydroorotase; Provi 72.1 4.8 0.00011 42.1 4.5 119 253-407 170-316 (380)
158 PRK09856 fructoselysine 3-epim 71.6 94 0.002 30.5 13.5 136 28-163 13-173 (275)
159 TIGR03314 Se_ssnA putative sel 71.1 91 0.002 33.4 14.1 151 29-209 137-313 (441)
160 TIGR03249 KdgD 5-dehydro-4-deo 69.7 50 0.0011 33.5 11.1 54 103-161 42-95 (296)
161 PF00701 DHDPS: Dihydrodipicol 68.8 1.1E+02 0.0025 30.5 13.5 135 30-186 24-175 (289)
162 cd00950 DHDPS Dihydrodipicolin 68.7 45 0.00097 33.4 10.5 104 29-148 22-134 (284)
163 PRK03170 dihydrodipicolinate s 68.4 1.2E+02 0.0027 30.4 13.6 138 29-186 23-175 (292)
164 PRK07998 gatY putative fructos 68.2 46 0.001 33.8 10.4 96 127-267 29-131 (283)
165 cd01309 Met_dep_hydrolase_C Me 67.9 22 0.00049 37.0 8.4 54 129-187 182-237 (359)
166 PF02679 ComA: (2R)-phospho-3- 66.9 70 0.0015 31.9 11.0 110 38-163 10-124 (244)
167 PF07969 Amidohydro_3: Amidohy 66.5 23 0.00049 36.9 8.2 136 34-187 136-284 (404)
168 PRK01211 dihydroorotase; Provi 65.9 16 0.00036 38.9 7.0 62 3-75 48-115 (409)
169 COG0613 Predicted metal-depend 65.7 8 0.00017 38.7 4.3 36 1-47 1-36 (258)
170 TIGR01496 DHPS dihydropteroate 65.5 1.5E+02 0.0033 29.5 15.3 29 122-150 56-85 (257)
171 PRK00369 pyrC dihydroorotase; 65.4 18 0.00038 38.5 7.1 62 3-75 49-116 (392)
172 PRK09875 putative hydrolase; P 65.2 11 0.00023 38.6 5.1 136 243-405 131-292 (292)
173 COG1387 HIS2 Histidinol phosph 65.1 1.5E+02 0.0031 29.2 14.8 186 2-208 1-227 (237)
174 TIGR00696 wecB_tagA_cpsF bacte 64.9 62 0.0013 30.5 9.9 93 30-145 37-130 (177)
175 PRK13404 dihydropyrimidinase; 64.7 1.1E+02 0.0023 33.4 13.1 107 34-161 141-254 (477)
176 PF13594 Amidohydro_5: Amidohy 63.9 6.9 0.00015 30.4 2.8 10 3-12 36-45 (68)
177 TIGR00629 uvde UV damage endon 63.3 65 0.0014 33.3 10.4 102 125-269 92-217 (312)
178 PRK00979 tetrahydromethanopter 62.3 91 0.002 32.1 11.2 134 121-330 50-196 (308)
179 PRK04250 dihydroorotase; Provi 61.4 15 0.00032 39.1 5.6 62 3-75 49-116 (398)
180 smart00518 AP2Ec AP endonuclea 61.2 92 0.002 30.6 11.0 60 88-147 45-105 (273)
181 KOG4245|consensus 61.2 27 0.00059 33.7 6.6 74 62-149 60-133 (297)
182 TIGR00674 dapA dihydrodipicoli 60.7 79 0.0017 31.8 10.5 104 29-148 20-132 (285)
183 PTZ00124 adenosine deaminase; 60.3 53 0.0012 34.5 9.4 72 128-206 207-285 (362)
184 PRK01060 endonuclease IV; Prov 60.0 1.2E+02 0.0025 30.0 11.5 106 1-148 1-111 (281)
185 cd08562 GDPD_EcUgpQ_like Glyce 59.5 1.6E+02 0.0035 28.0 12.3 58 127-187 87-151 (229)
186 COG0685 MetF 5,10-methylenetet 59.5 45 0.00098 34.0 8.5 54 28-81 92-157 (291)
187 COG0329 DapA Dihydrodipicolina 59.4 2.1E+02 0.0046 29.2 14.3 139 29-187 26-179 (299)
188 COG2108 Uncharacterized conser 59.0 1.2E+02 0.0026 31.6 11.2 160 5-199 110-274 (353)
189 PF01244 Peptidase_M19: Membra 58.7 78 0.0017 32.7 10.2 107 261-405 191-319 (320)
190 PRK02925 glucuronate isomerase 58.5 6.1 0.00013 42.8 2.0 37 246-282 266-310 (466)
191 PF03808 Glyco_tran_WecB: Glyc 57.5 1E+02 0.0022 28.6 10.0 99 29-149 36-135 (172)
192 PF02614 UxaC: Glucuronate iso 57.2 2.4 5.3E-05 46.0 -1.2 35 248-282 273-310 (462)
193 PRK07203 putative chlorohydrol 56.7 2.7E+02 0.0059 29.6 15.3 149 29-209 138-314 (442)
194 PRK08645 bifunctional homocyst 55.6 53 0.0011 37.0 9.0 17 33-49 401-417 (612)
195 cd01300 YtcJ_like YtcJ_like me 54.6 31 0.00066 37.2 6.8 62 126-187 294-361 (479)
196 PRK03692 putative UDP-N-acetyl 54.6 2.3E+02 0.005 28.1 12.7 95 30-147 94-189 (243)
197 PRK09356 imidazolonepropionase 54.3 2.4E+02 0.0052 29.4 13.3 58 126-187 221-279 (406)
198 PRK07094 biotin synthase; Prov 54.1 2.5E+02 0.0055 28.5 15.2 46 128-177 104-150 (323)
199 COG1574 Predicted metal-depend 54.0 51 0.0011 36.6 8.3 66 123-188 317-388 (535)
200 COG2159 Predicted metal-depend 53.7 2.6E+02 0.0056 28.4 14.6 158 32-212 88-258 (293)
201 TIGR03178 allantoinase allanto 53.6 1.1E+02 0.0024 32.7 10.7 34 374-407 337-370 (443)
202 COG0191 Fba Fructose/tagatose 53.5 58 0.0013 33.2 7.9 78 56-150 7-85 (286)
203 cd00952 CHBPH_aldolase Trans-o 53.3 1.7E+02 0.0036 30.0 11.5 104 29-148 30-143 (309)
204 cd01292 metallo-dependent_hydr 52.8 16 0.00034 34.9 3.7 114 249-402 131-274 (275)
205 cd08582 GDPD_like_2 Glyceropho 52.5 2.2E+02 0.0048 27.3 12.3 59 126-187 86-150 (233)
206 PRK12331 oxaloacetate decarbox 52.3 2.4E+02 0.0052 30.6 13.0 42 28-69 26-77 (448)
207 PRK06151 N-ethylammeline chlor 52.1 48 0.001 36.1 7.8 62 126-187 220-301 (488)
208 PF04273 DUF442: Putative phos 51.5 12 0.00027 32.4 2.5 41 109-152 55-98 (110)
209 PRK06801 hypothetical protein; 51.5 1.6E+02 0.0034 30.1 10.8 62 126-187 28-96 (286)
210 TIGR03121 one_C_dehyd_A formyl 51.0 2.2E+02 0.0047 31.9 12.5 80 315-408 366-451 (556)
211 cd08556 GDPD Glycerophosphodie 51.0 1.9E+02 0.0042 26.2 11.5 30 254-283 150-179 (189)
212 TIGR00683 nanA N-acetylneurami 50.6 2.8E+02 0.0061 28.0 13.8 137 29-187 22-177 (290)
213 COG1456 CdhE CO dehydrogenase/ 50.6 50 0.0011 34.7 7.0 35 253-287 194-228 (467)
214 COG1904 UxaC Glucuronate isome 50.6 14 0.0003 39.5 3.1 58 1-65 25-90 (463)
215 TIGR02313 HpaI-NOT-DapA 2,4-di 49.8 2.9E+02 0.0063 27.9 13.1 139 29-187 22-177 (294)
216 PRK04147 N-acetylneuraminate l 49.6 2.9E+02 0.0062 27.8 14.5 138 29-186 25-178 (293)
217 PRK09997 hydroxypyruvate isome 49.6 2.6E+02 0.0056 27.3 14.5 133 28-163 15-170 (258)
218 COG5016 Pyruvate/oxaloacetate 49.2 1.3E+02 0.0029 32.3 9.9 104 30-150 100-209 (472)
219 PLN02591 tryptophan synthase 49.1 2.8E+02 0.0062 27.6 12.5 74 29-114 94-168 (250)
220 PRK09532 DNA polymerase III su 49.0 42 0.0009 39.6 7.0 64 1-74 1-65 (874)
221 cd00951 KDGDH 5-dehydro-4-deox 48.9 2.3E+02 0.0049 28.6 11.6 54 103-161 37-90 (289)
222 COG0191 Fba Fructose/tagatose 48.9 1.5E+02 0.0031 30.4 9.9 96 126-267 28-132 (286)
223 PRK09228 guanine deaminase; Pr 48.8 3.1E+02 0.0067 29.3 13.2 62 133-210 253-324 (433)
224 PF03851 UvdE: UV-endonuclease 48.8 53 0.0012 33.3 6.9 16 254-269 193-208 (275)
225 PRK07709 fructose-bisphosphate 48.3 3.1E+02 0.0068 27.9 12.7 117 28-150 88-213 (285)
226 TIGR00542 hxl6Piso_put hexulos 48.2 2.8E+02 0.0061 27.3 13.0 126 54-186 17-170 (279)
227 PRK08185 hypothetical protein; 48.1 1.3E+02 0.0029 30.6 9.6 96 126-267 23-125 (283)
228 cd01306 PhnM PhnM is believed 47.8 1.9E+02 0.0041 30.0 10.9 34 374-407 260-293 (325)
229 TIGR00510 lipA lipoate synthas 47.8 3E+02 0.0065 28.2 12.3 58 153-219 195-253 (302)
230 PRK09195 gatY tagatose-bisphos 47.0 1.5E+02 0.0033 30.2 9.9 61 127-187 29-96 (284)
231 PRK13111 trpA tryptophan synth 46.5 2.8E+02 0.0062 27.7 11.7 112 68-203 16-147 (258)
232 PF00701 DHDPS: Dihydrodipicol 45.5 2.5E+02 0.0055 28.0 11.4 27 247-273 110-136 (289)
233 TIGR01856 hisJ_fam histidinol 45.1 3.1E+02 0.0068 26.9 12.0 119 4-140 1-155 (253)
234 cd00958 DhnA Class I fructose- 44.9 2.6E+02 0.0056 26.9 11.0 140 27-187 20-177 (235)
235 cd00019 AP2Ec AP endonuclease 44.7 3.2E+02 0.0069 26.9 12.3 39 124-162 120-166 (279)
236 PLN02522 ATP citrate (pro-S)-l 44.6 2.9E+02 0.0062 31.4 12.4 43 241-283 391-438 (608)
237 TIGR03234 OH-pyruv-isom hydrox 44.6 3E+02 0.0065 26.6 15.1 131 28-162 14-168 (254)
238 TIGR02967 guan_deamin guanine 44.6 3.8E+02 0.0082 28.0 13.0 34 251-284 186-220 (401)
239 PRK13111 trpA tryptophan synth 44.2 3.3E+02 0.0071 27.2 11.7 38 29-66 105-142 (258)
240 PRK15493 5-methylthioadenosine 43.8 4.3E+02 0.0094 28.2 15.8 51 143-209 250-306 (435)
241 COG2355 Zn-dependent dipeptida 43.6 2.4E+02 0.0052 29.2 10.7 111 257-405 176-308 (313)
242 PRK12738 kbaY tagatose-bisphos 43.1 1.9E+02 0.0042 29.4 10.0 62 126-187 28-96 (286)
243 PF00962 A_deaminase: Adenosin 43.1 3E+02 0.0066 27.8 11.7 88 88-187 148-240 (331)
244 cd01295 AdeC Adenine deaminase 42.6 29 0.00064 36.9 4.2 119 251-407 121-255 (422)
245 PF03102 NeuB: NeuB family; I 42.6 50 0.0011 32.8 5.5 45 131-177 104-152 (241)
246 TIGR01108 oadA oxaloacetate de 42.5 5E+02 0.011 29.2 14.0 40 28-67 21-70 (582)
247 COG0329 DapA Dihydrodipicolina 42.4 1E+02 0.0023 31.4 8.0 41 245-285 111-154 (299)
248 PRK12394 putative metallo-depe 42.2 40 0.00087 35.3 5.1 123 250-407 172-321 (379)
249 TIGR00674 dapA dihydrodipicoli 42.0 3.7E+02 0.008 26.9 12.0 54 103-161 35-89 (285)
250 PRK14461 ribosomal RNA large s 41.7 77 0.0017 33.6 7.0 50 138-187 227-295 (371)
251 PRK07374 dnaE DNA polymerase I 41.4 65 0.0014 39.2 7.1 63 1-73 1-64 (1170)
252 cd00953 KDG_aldolase KDG (2-ke 41.2 3.8E+02 0.0083 26.8 15.1 137 28-187 20-171 (279)
253 COG3964 Predicted amidohydrola 41.1 42 0.00091 34.6 4.7 41 373-413 284-326 (386)
254 cd00443 ADA_AMPD Adenosine/AMP 41.0 1.3E+02 0.0027 30.7 8.4 101 92-206 124-229 (305)
255 cd04726 KGPDC_HPS 3-Keto-L-gul 40.8 1.7E+02 0.0037 27.2 8.8 62 104-177 26-89 (202)
256 TIGR03239 GarL 2-dehydro-3-deo 40.7 1.7E+02 0.0038 29.0 9.1 42 242-284 181-222 (249)
257 TIGR01858 tag_bisphos_ald clas 40.7 2.3E+02 0.0051 28.8 10.1 95 127-267 27-129 (282)
258 cd01301 rDP_like renal dipepti 40.7 3.2E+02 0.0068 28.1 11.2 111 252-403 179-309 (309)
259 COG1456 CdhE CO dehydrogenase/ 40.7 2.3E+02 0.0051 29.9 10.0 178 46-282 139-325 (467)
260 PRK09045 N-ethylammeline chlor 40.6 4.7E+02 0.01 27.8 13.1 36 250-285 201-236 (443)
261 PRK06920 dnaE DNA polymerase I 40.5 2.5E+02 0.0054 34.2 11.8 56 1-65 1-57 (1107)
262 PRK10128 2-keto-3-deoxy-L-rham 40.4 1.2E+02 0.0027 30.4 8.1 43 240-283 186-228 (267)
263 CHL00200 trpA tryptophan synth 40.4 4E+02 0.0086 26.8 12.4 75 29-114 107-181 (263)
264 PRK07135 dnaE DNA polymerase I 40.3 71 0.0015 38.1 7.1 56 1-65 1-57 (973)
265 PRK05835 fructose-bisphosphate 39.8 2.2E+02 0.0048 29.3 9.9 97 126-268 27-132 (307)
266 PTZ00066 pyruvate kinase; Prov 39.8 1.6E+02 0.0035 32.6 9.3 105 27-147 209-315 (513)
267 TIGR01859 fruc_bis_ald_ fructo 39.5 1.8E+02 0.0039 29.5 9.1 31 253-283 189-221 (282)
268 cd04724 Tryptophan_synthase_al 39.4 3.8E+02 0.0082 26.3 11.6 102 85-204 12-135 (242)
269 PRK07315 fructose-bisphosphate 39.2 2.1E+02 0.0045 29.2 9.6 96 126-267 28-133 (293)
270 PTZ00372 endonuclease 4-like p 38.9 5.3E+02 0.011 27.8 15.3 28 28-55 141-168 (413)
271 PRK10558 alpha-dehydro-beta-de 38.8 1.3E+02 0.0028 30.0 7.9 42 242-284 188-229 (256)
272 cd01300 YtcJ_like YtcJ_like me 38.7 2.9E+02 0.0064 29.6 11.3 36 250-285 294-331 (479)
273 PF01791 DeoC: DeoC/LacD famil 38.5 87 0.0019 30.5 6.5 108 29-148 20-133 (236)
274 cd00945 Aldolase_Class_I Class 38.1 3.1E+02 0.0067 24.9 14.0 142 28-187 13-168 (201)
275 PRK06826 dnaE DNA polymerase I 37.9 88 0.0019 38.1 7.5 56 1-65 3-59 (1151)
276 TIGR01521 FruBisAldo_II_B fruc 37.5 2.6E+02 0.0057 29.4 10.0 62 126-187 26-95 (347)
277 PLN02765 pyruvate kinase 37.2 2.6E+02 0.0056 31.1 10.4 103 27-145 206-311 (526)
278 PRK12737 gatY tagatose-bisphos 37.0 2.7E+02 0.0059 28.3 9.9 61 127-187 29-96 (284)
279 PRK05835 fructose-bisphosphate 36.5 5E+02 0.011 26.8 15.4 160 4-187 75-247 (307)
280 PLN02540 methylenetetrahydrofo 36.5 1.9E+02 0.0042 32.4 9.4 106 28-144 73-201 (565)
281 PRK03620 5-dehydro-4-deoxygluc 36.5 4.7E+02 0.01 26.5 12.6 40 121-161 58-97 (303)
282 COG0276 HemH Protoheme ferro-l 36.2 5.2E+02 0.011 26.9 18.7 151 26-187 100-278 (320)
283 TIGR01859 fruc_bis_ald_ fructo 35.7 2.7E+02 0.0059 28.2 9.8 60 128-187 28-96 (282)
284 PRK12857 fructose-1,6-bisphosp 35.5 2.8E+02 0.0062 28.2 9.8 61 127-187 29-96 (284)
285 PF00809 Pterin_bind: Pterin b 35.3 4.1E+02 0.0088 25.4 12.0 56 90-149 22-81 (210)
286 PRK08610 fructose-bisphosphate 35.3 2.7E+02 0.0059 28.4 9.6 96 126-267 28-134 (286)
287 PF00809 Pterin_bind: Pterin b 35.3 35 0.00075 32.9 3.1 112 31-150 82-207 (210)
288 PRK13209 L-xylulose 5-phosphat 35.0 4.5E+02 0.0097 25.8 16.0 133 28-162 21-178 (283)
289 TIGR01244 conserved hypothetic 34.8 46 0.00099 29.7 3.6 26 123-151 72-97 (135)
290 PF02126 PTE: Phosphotriestera 34.6 64 0.0014 33.2 5.0 136 246-405 137-308 (308)
291 cd00408 DHDPS-like Dihydrodipi 34.5 4.7E+02 0.01 25.9 12.1 39 121-160 48-87 (281)
292 PRK06189 allantoinase; Provisi 34.3 6.1E+02 0.013 27.1 13.4 40 121-162 213-253 (451)
293 cd01320 ADA Adenosine deaminas 33.8 5.1E+02 0.011 26.1 14.5 56 140-211 210-277 (325)
294 PRK13209 L-xylulose 5-phosphat 33.7 4.7E+02 0.01 25.7 13.1 57 88-145 57-117 (283)
295 PTZ00393 protein tyrosine phos 33.7 69 0.0015 31.9 4.8 42 242-283 148-189 (241)
296 COG1228 HutI Imidazolonepropio 33.2 5.8E+02 0.013 27.3 12.2 51 130-186 223-273 (406)
297 PRK14041 oxaloacetate decarbox 32.9 6.9E+02 0.015 27.4 13.5 161 28-276 25-208 (467)
298 cd01298 ATZ_TRZ_like TRZ/ATZ f 32.8 4.6E+02 0.01 27.0 11.3 29 250-278 193-221 (411)
299 PRK08195 4-hyroxy-2-oxovalerat 32.1 5.4E+02 0.012 26.7 11.5 95 28-145 25-133 (337)
300 cd01311 PDC_hydrolase 2-pyrone 32.0 2E+02 0.0042 28.4 8.0 17 196-212 209-225 (263)
301 TIGR01244 conserved hypothetic 31.9 61 0.0013 28.9 3.9 27 246-275 71-97 (135)
302 PRK14042 pyruvate carboxylase 31.4 5.3E+02 0.012 29.2 11.9 168 24-276 22-209 (596)
303 PLN02461 Probable pyruvate kin 31.4 3.7E+02 0.0081 29.8 10.5 104 28-147 194-299 (511)
304 KOG0564|consensus 31.1 2.2E+02 0.0048 31.3 8.4 117 4-144 78-213 (590)
305 TIGR03569 NeuB_NnaB N-acetylne 31.0 2E+02 0.0044 29.9 8.1 23 32-54 20-42 (329)
306 PF08444 Gly_acyl_tr_C: Aralky 30.9 88 0.0019 26.3 4.3 57 107-163 19-75 (89)
307 PF00290 Trp_syntA: Tryptophan 30.7 5.1E+02 0.011 26.0 10.6 38 29-66 103-140 (259)
308 cd07939 DRE_TIM_NifV Streptomy 30.6 5.3E+02 0.012 25.4 15.6 103 29-150 21-133 (259)
309 cd00127 DSPc Dual specificity 30.5 91 0.002 27.0 4.8 37 245-281 62-98 (139)
310 cd03465 URO-D_like The URO-D _ 30.5 1.4E+02 0.003 30.3 6.7 57 125-186 206-263 (330)
311 PRK00448 polC DNA polymerase I 30.5 1.2E+02 0.0025 37.9 7.0 55 2-65 333-388 (1437)
312 PRK07998 gatY putative fructos 30.1 6E+02 0.013 25.8 14.0 21 167-187 200-221 (283)
313 cd01293 Bact_CD Bacterial cyto 30.1 69 0.0015 33.0 4.5 50 249-299 187-243 (398)
314 TIGR03239 GarL 2-dehydro-3-deo 30.1 4.3E+02 0.0094 26.2 10.0 113 32-150 75-213 (249)
315 PF07611 DUF1574: Protein of u 29.8 97 0.0021 32.5 5.4 44 119-162 244-287 (345)
316 PRK07709 fructose-bisphosphate 29.7 3.9E+02 0.0085 27.2 9.7 96 126-267 28-134 (285)
317 PTZ00300 pyruvate kinase; Prov 29.7 3E+02 0.0065 30.0 9.3 104 28-147 148-252 (454)
318 PF01979 Amidohydro_1: Amidohy 29.5 31 0.00068 34.4 1.8 21 387-407 295-315 (333)
319 PRK06739 pyruvate kinase; Vali 29.2 4.1E+02 0.0088 28.0 9.9 104 28-147 166-271 (352)
320 cd06394 PBP1_iGluR_Kainate_KA1 29.1 4.8E+02 0.01 26.9 10.5 56 127-185 148-203 (333)
321 cd00947 TBP_aldolase_IIB Tagat 29.1 3.8E+02 0.0083 27.1 9.5 61 127-187 24-91 (276)
322 PRK06806 fructose-bisphosphate 28.9 4.3E+02 0.0092 26.8 9.8 21 247-267 111-131 (281)
323 cd01305 archeal_chlorohydrolas 28.9 1.3E+02 0.0029 29.4 6.1 57 138-210 162-224 (263)
324 COG1751 Uncharacterized conser 28.9 1.4E+02 0.0031 27.7 5.6 43 23-65 9-51 (186)
325 COG1831 Predicted metal-depend 28.5 84 0.0018 31.8 4.5 131 248-407 142-283 (285)
326 COG1242 Predicted Fe-S oxidore 28.4 5.7E+02 0.012 26.3 10.2 121 52-184 99-232 (312)
327 PF07611 DUF1574: Protein of u 28.4 1.1E+02 0.0024 32.0 5.6 47 239-285 240-286 (345)
328 TIGR00538 hemN oxygen-independ 28.3 6.1E+02 0.013 27.3 11.5 73 30-115 83-172 (455)
329 PF05563 SpvD: Salmonella plas 28.3 23 0.00049 32.2 0.4 20 466-485 155-174 (216)
330 PF12085 DUF3562: Protein of u 28.0 1.3E+02 0.0029 23.8 4.6 32 372-403 4-35 (66)
331 COG0159 TrpA Tryptophan syntha 27.9 6.5E+02 0.014 25.5 11.2 77 28-115 109-185 (265)
332 COG1574 Predicted metal-depend 27.9 1.1E+02 0.0024 34.0 5.8 54 247-300 317-372 (535)
333 cd00954 NAL N-Acetylneuraminic 27.9 6.3E+02 0.014 25.3 15.2 139 29-187 22-177 (288)
334 cd01321 ADGF Adenosine deamina 27.6 2.7E+02 0.0059 29.0 8.4 71 126-204 178-259 (345)
335 PRK08610 fructose-bisphosphate 27.5 6.7E+02 0.015 25.5 12.3 38 28-66 88-131 (286)
336 PRK08204 hypothetical protein; 27.4 6.7E+02 0.015 26.5 11.7 51 251-301 201-255 (449)
337 cd00127 DSPc Dual specificity 27.4 1.2E+02 0.0026 26.2 5.0 33 123-155 64-96 (139)
338 COG3280 TreY Maltooligosyl tre 27.4 19 0.00041 41.1 -0.2 28 446-473 310-341 (889)
339 PRK15250 virulence protein Spv 27.2 23 0.00049 32.2 0.3 20 466-485 155-174 (216)
340 cd00019 AP2Ec AP endonuclease 27.1 4.9E+02 0.011 25.5 9.9 59 88-148 45-107 (279)
341 PTZ00170 D-ribulose-5-phosphat 26.9 2.8E+02 0.0062 27.0 7.9 48 29-77 76-124 (228)
342 COG4806 RhaA L-rhamnose isomer 26.5 1.4E+02 0.003 30.6 5.5 38 196-266 91-128 (419)
343 COG5014 Predicted Fe-S oxidore 26.5 1.3E+02 0.0029 28.6 5.1 37 294-334 93-129 (228)
344 PRK08393 N-ethylammeline chlor 26.4 7.9E+02 0.017 26.0 15.7 62 133-210 228-299 (424)
345 PRK13399 fructose-1,6-bisphosp 26.3 7.8E+02 0.017 25.9 15.1 54 129-187 214-269 (347)
346 PRK11613 folP dihydropteroate 26.2 7E+02 0.015 25.3 15.1 60 87-150 38-100 (282)
347 cd01294 DHOase Dihydroorotase 26.1 1.6E+02 0.0034 30.2 6.3 29 385-415 276-304 (335)
348 cd08563 GDPD_TtGDE_like Glycer 26.1 5.8E+02 0.013 24.3 11.8 31 254-284 190-220 (230)
349 TIGR01405 polC_Gram_pos DNA po 26.1 1.8E+02 0.0039 35.7 7.5 55 2-65 103-158 (1213)
350 PRK09197 fructose-bisphosphate 25.4 4.7E+02 0.01 27.5 9.5 24 245-268 140-163 (350)
351 COG1938 Archaeal enzymes of AT 25.3 2.3E+02 0.0049 28.3 6.8 92 272-407 131-231 (244)
352 TIGR03586 PseI pseudaminic aci 25.3 3.3E+02 0.0071 28.4 8.3 15 31-45 20-34 (327)
353 cd01312 Met_dep_hydrolase_D Me 25.2 98 0.0021 32.6 4.6 36 248-283 160-195 (381)
354 TIGR00167 cbbA ketose-bisphosp 25.1 5.3E+02 0.011 26.3 9.7 22 246-267 113-134 (288)
355 PRK10558 alpha-dehydro-beta-de 24.9 3.7E+02 0.0081 26.7 8.5 114 32-149 82-219 (256)
356 cd05126 Mth938 Mth938 domain. 24.9 1.9E+02 0.0042 25.3 5.7 68 90-172 48-116 (117)
357 cd03308 CmuA_CmuC_like CmuA_Cm 24.7 2.8E+02 0.0061 29.2 8.0 58 126-186 254-311 (378)
358 PRK08203 hydroxydechloroatrazi 24.5 8.7E+02 0.019 25.8 14.4 35 250-284 213-247 (451)
359 cd03309 CmuC_like CmuC_like. P 24.3 3.2E+02 0.007 28.2 8.1 56 126-186 197-255 (321)
360 PRK07213 chlorohydrolase; Prov 24.3 2.2E+02 0.0047 29.7 7.0 61 126-188 178-249 (375)
361 PF01261 AP_endonuc_2: Xylose 24.2 5.4E+02 0.012 23.3 10.0 102 129-298 29-163 (213)
362 PRK09856 fructoselysine 3-epim 24.1 6.7E+02 0.015 24.4 14.4 96 49-147 9-111 (275)
363 PRK08446 coproporphyrinogen II 24.0 7.4E+02 0.016 25.6 10.9 51 29-79 32-96 (350)
364 PRK00035 hemH ferrochelatase; 23.9 7.9E+02 0.017 25.1 15.4 26 27-52 104-129 (333)
365 TIGR00587 nfo apurinic endonuc 23.8 4.5E+02 0.0097 26.1 8.9 28 27-54 10-37 (274)
366 TIGR01431 adm_rel adenosine de 23.7 3.8E+02 0.0082 29.4 8.9 89 102-205 288-386 (479)
367 cd00959 DeoC 2-deoxyribose-5-p 23.7 6.3E+02 0.014 23.9 11.2 105 27-145 16-121 (203)
368 TIGR03234 OH-pyruv-isom hydrox 23.5 6.7E+02 0.015 24.1 13.1 36 251-286 123-168 (254)
369 PRK13210 putative L-xylulose 5 23.5 7E+02 0.015 24.3 14.8 126 54-186 17-170 (284)
370 PF00762 Ferrochelatase: Ferro 23.3 8.2E+02 0.018 25.1 14.3 139 27-175 99-264 (316)
371 COG0816 Predicted endonuclease 23.2 5.5E+02 0.012 23.4 8.4 69 89-161 41-110 (141)
372 PTZ00242 protein tyrosine phos 23.2 1.1E+02 0.0024 28.3 4.1 40 242-281 72-115 (166)
373 PRK05826 pyruvate kinase; Prov 23.1 4.3E+02 0.0093 28.9 9.1 103 28-147 174-279 (465)
374 TIGR02033 D-hydantoinase D-hyd 23.0 8E+02 0.017 25.9 11.2 34 374-407 345-378 (454)
375 PRK09282 pyruvate carboxylase 22.8 1.1E+03 0.024 26.5 13.9 41 28-68 26-76 (592)
376 PRK00957 methionine synthase; 22.7 7.9E+02 0.017 24.7 13.0 90 139-263 189-304 (305)
377 cd00952 CHBPH_aldolase Trans-o 22.6 4.8E+02 0.01 26.6 9.0 40 121-161 59-99 (309)
378 PLN02727 NAD kinase 22.5 77 0.0017 37.4 3.4 81 177-277 270-354 (986)
379 PRK13399 fructose-1,6-bisphosp 22.3 6.6E+02 0.014 26.4 9.9 62 126-187 28-97 (347)
380 PLN02762 pyruvate kinase compl 22.2 5.8E+02 0.013 28.3 9.9 105 28-147 204-310 (509)
381 COG5495 Uncharacterized conser 22.1 1.4E+02 0.0029 29.9 4.5 48 137-187 86-139 (289)
382 TIGR00262 trpA tryptophan synt 22.0 7.8E+02 0.017 24.4 12.5 114 68-206 14-148 (256)
383 TIGR00161 conserved hypothetic 22.0 7.6E+02 0.016 24.2 10.5 75 248-333 91-179 (238)
384 COG3453 Uncharacterized protei 22.0 46 0.001 29.6 1.2 42 108-152 55-99 (130)
385 cd01317 DHOase_IIa Dihydroorot 22.0 2.6E+02 0.0057 29.0 7.1 35 373-407 291-325 (374)
386 cd01303 GDEase Guanine deamina 21.9 9.6E+02 0.021 25.4 12.1 35 251-285 208-243 (429)
387 PRK07084 fructose-bisphosphate 21.9 6.5E+02 0.014 26.2 9.6 61 127-187 35-107 (321)
388 PF13456 RVT_3: Reverse transc 21.9 60 0.0013 25.4 1.8 22 189-210 11-32 (87)
389 PRK05672 dnaE2 error-prone DNA 21.8 2.4E+02 0.0052 34.1 7.4 55 2-65 4-59 (1046)
390 PRK05926 hypothetical protein; 21.7 60 0.0013 34.3 2.2 26 430-456 74-103 (370)
391 COG2089 SpsE Sialic acid synth 21.6 2E+02 0.0043 30.1 5.7 46 129-176 136-185 (347)
392 PF03190 Thioredox_DsbH: Prote 21.6 40 0.00087 31.5 0.8 31 254-284 27-57 (163)
393 COG5309 Exo-beta-1,3-glucanase 21.6 4.9E+02 0.011 26.6 8.3 45 103-147 232-280 (305)
394 KOG4549|consensus 21.5 2.5E+02 0.0055 25.4 5.6 60 2-64 19-84 (144)
395 TIGR00683 nanA N-acetylneurami 21.3 8.4E+02 0.018 24.5 11.7 53 104-161 39-92 (290)
396 smart00195 DSPc Dual specifici 21.3 1.5E+02 0.0034 25.7 4.5 59 120-186 58-116 (138)
397 COG3572 GshA Gamma-glutamylcys 21.2 3E+02 0.0064 29.5 7.0 44 66-116 131-175 (456)
398 PRK06806 fructose-bisphosphate 21.1 3.9E+02 0.0085 27.1 7.8 27 258-284 194-222 (281)
399 cd07393 MPP_DR1119 Deinococcus 21.1 7.4E+02 0.016 23.8 16.3 40 123-162 145-193 (232)
400 PF01116 F_bP_aldolase: Fructo 20.8 3E+02 0.0065 28.0 6.9 95 127-267 28-130 (287)
401 PRK03170 dihydrodipicolinate s 20.8 8.5E+02 0.018 24.3 11.7 40 121-161 52-92 (292)
402 TIGR02313 HpaI-NOT-DapA 2,4-di 20.5 8.8E+02 0.019 24.4 11.6 40 121-161 51-91 (294)
403 PF02007 MtrH: Tetrahydrometha 20.4 1.7E+02 0.0036 30.0 4.9 47 233-279 33-79 (296)
404 COG4294 Uve UV damage repair e 20.4 6.4E+02 0.014 26.1 8.9 102 129-276 118-244 (347)
405 COG4981 Enoyl reductase domain 20.4 8E+02 0.017 27.6 10.2 131 47-206 96-254 (717)
406 PRK13753 dihydropteroate synth 20.3 9.2E+02 0.02 24.5 15.1 26 249-274 187-213 (279)
407 PF13541 ChlI: Subunit ChlI of 20.2 69 0.0015 28.3 1.9 14 102-115 80-93 (121)
408 PRK06256 biotin synthase; Vali 20.0 9.3E+02 0.02 24.5 11.0 46 129-178 128-174 (336)
409 PRK03892 ribonuclease P protei 20.0 8.3E+02 0.018 23.9 13.3 111 38-160 56-193 (216)
No 1
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=100.00 E-value=9e-65 Score=499.22 Aligned_cols=255 Identities=37% Similarity=0.560 Sum_probs=231.1
Q ss_pred CcEEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCCHHhHHHHHHHHhcCCCeEEEeecCCCCCC
Q psy4448 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCS 80 (487)
Q Consensus 1 m~~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~la~~~~~v~~avGiHP~~~~ 80 (487)
||+||+||||++..| ..|.++|+++|+++||..++++|++++++..+++++++||++|+++|+||++
T Consensus 1 ~~liDtH~HL~~~~~-----------~~d~~~vi~~a~~~gv~~~~~~g~~~~~~~~~~~la~~y~~v~~~~G~HP~~-- 67 (256)
T COG0084 1 MMLIDTHCHLDFEEF-----------DEDRDEVIARAREAGVKKMVVVGTDLEDFKRALELAEKYPNVYAAVGVHPLD-- 67 (256)
T ss_pred CccEEeeeCCCchhh-----------cCCHHHHHHHHHHcCCcEEEEeecCHHHHHHHHHHHHhCCCeEEEEeeCCCc--
Confidence 899999999998777 6899999999999999999999999999999999999999999999999999
Q ss_pred CcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHH
Q psy4448 81 EFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKE 160 (487)
Q Consensus 81 ~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~ 160 (487)
... ..++.++.|.+++..+ ++++|||||||||++.....++.|+++|++||+||+++++||+||+|+|+++++++|++
T Consensus 68 ~~~-~~~~~~~~l~~~~~~~-~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~iL~~ 145 (256)
T COG0084 68 ADE-HSEEDLEELEQLAEHH-PKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAHEDTLEILKE 145 (256)
T ss_pred ccc-ccHHHHHHHHHHHhcC-CCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccccHHHHHHHHHh
Confidence 221 1356688899988742 68999999999999843336889999999999999999999999999999999999999
Q ss_pred hCCCCCCcEEEEecCCCHHHHHHHHcCccchhHhhhcCCCceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccc
Q psy4448 161 YAPKLPRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKM 240 (487)
Q Consensus 161 ~~~~~~~~~v~H~FsG~~~~a~~~l~~~~g~e~v~~iP~driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (487)
+.. +.++|+|||||+.++|++++++
T Consensus 146 ~~~--~~~gi~HcFsGs~e~a~~~~d~----------------------------------------------------- 170 (256)
T COG0084 146 EGA--PVGGVLHCFSGSAEEARKLLDL----------------------------------------------------- 170 (256)
T ss_pred cCC--CCCEEEEccCCCHHHHHHHHHc-----------------------------------------------------
Confidence 874 2489999999999999999998
Q ss_pred cCCCChhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHHhCCCCCCCcEEEEeeCCcccccccccchhh-HHHhh
Q psy4448 241 VKSRNEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKTKEN-LETVK 319 (487)
Q Consensus 241 ~~~~n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~~~~~~~~~k~~~~-~e~v~ 319 (487)
|+|+||||. +++++++. +++++
T Consensus 171 ----------------------------------------------------G~yisisG~-----itfk~a~~~~ev~~ 193 (256)
T COG0084 171 ----------------------------------------------------GFYISISGI-----VTFKNAEKLREVAR 193 (256)
T ss_pred ----------------------------------------------------CeEEEECce-----eecCCcHHHHHHHH
Confidence 469999995 78887554 59999
Q ss_pred hCCCCceEeccCCCCCCCCCCCcchhhHhhhhhhhhhhccCCccCCCCCCccccHHHHHHHHHHhhCCCHHHHHHHHHHH
Q psy4448 320 SIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQN 399 (487)
Q Consensus 320 ~iPldrlLlETD~P~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~P~~l~~v~~~iA~ikg~~~~~va~~~~~N 399 (487)
.||+||||+|||+||++|.|. +|++|+|+++..|++.||++||++.++|+++|++|
T Consensus 194 ~iPldrLL~ETDsPyl~P~p~------------------------rGkrNeP~~v~~v~~~iAelk~~~~eeva~~t~~N 249 (256)
T COG0084 194 ELPLDRLLLETDAPYLAPVPY------------------------RGKRNEPAYVRHVAEKLAELKGISAEEVAEITTEN 249 (256)
T ss_pred hCCHhHeEeccCCCCCCCcCC------------------------CCCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999988874 58999999999999999999999999999999999
Q ss_pred HHHhcCC
Q psy4448 400 TLRLFFP 406 (487)
Q Consensus 400 ~~rlf~~ 406 (487)
+++||++
T Consensus 250 ~~~lf~~ 256 (256)
T COG0084 250 AKRLFGL 256 (256)
T ss_pred HHHHhcC
Confidence 9999975
No 2
>PRK10425 DNase TatD; Provisional
Probab=100.00 E-value=1.6e-59 Score=465.41 Aligned_cols=257 Identities=33% Similarity=0.534 Sum_probs=224.5
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCCHHhHHHHHHHHhcCCCeEEEeecCCCCCCCc
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCSEF 82 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~la~~~~~v~~avGiHP~~~~~~ 82 (487)
+||+||||++..| ..|+++++++|+++||.+++++|+++++|.++++++++||++++++|+|||++.+.
T Consensus 1 ~iDtH~HL~~~~~-----------~~d~~~vl~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~~~ 69 (258)
T PRK10425 1 MFDIGVNLTSSQF-----------AKDRDDVVARAFAAGVNGMLITGTNLRESQQAQKLARQYPSCWSTAGVHPHDSSQW 69 (258)
T ss_pred CEEeeeCcCChhh-----------hccHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHHHHHhCCCEEEEEEeCcCccccC
Confidence 6999999998777 57999999999999999999999999999999999999999999999999998754
Q ss_pred CCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHhC
Q psy4448 83 ENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYA 162 (487)
Q Consensus 83 ~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~~ 162 (487)
. ++.++.|++++.. ++++|||||||||++ +....+.|+++|++||++|.++++||+||+|+|+++++++|+++.
T Consensus 70 ~---~~~~~~l~~~~~~--~~~vaIGEiGLDy~~-~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~a~~~~l~iL~~~~ 143 (258)
T PRK10425 70 Q---AATEEAIIELAAQ--PEVVAIGECGLDFNR-NFSTPEEQERAFVAQLAIAAELNMPVFMHCRDAHERFMALLEPWL 143 (258)
T ss_pred C---HHHHHHHHHhccC--CCEEEEeeeeecccc-CCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHhc
Confidence 2 4557788888765 689999999999987 556789999999999999999999999999999999999999864
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHcCccchhHhhhcCCCceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccccC
Q psy4448 163 PKLPRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVK 242 (487)
Q Consensus 163 ~~~~~~~v~H~FsG~~~~a~~~l~~~~g~e~v~~iP~driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (487)
... .++|+|||+|+.+++++++++
T Consensus 144 ~~~-~~~i~H~fsG~~~~~~~~l~~------------------------------------------------------- 167 (258)
T PRK10425 144 DKL-PGAVLHCFTGTREEMQACLAR------------------------------------------------------- 167 (258)
T ss_pred cCC-CCeEEEecCCCHHHHHHHHHC-------------------------------------------------------
Confidence 322 269999999999999999987
Q ss_pred CCChhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHHhCCCCCCCcEEEEeeCCcccccccccch-hhHHHhhhC
Q psy4448 243 SRNEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKTK-ENLETVKSI 321 (487)
Q Consensus 243 ~~n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~~~~~~~~~k~~-~~~e~v~~i 321 (487)
|+|+||||. +++.++. +.+++++.+
T Consensus 168 --------------------------------------------------G~~~si~g~----i~~~~~~~~~~~~~~~i 193 (258)
T PRK10425 168 --------------------------------------------------GLYIGITGW----VCDERRGLELRELLPLI 193 (258)
T ss_pred --------------------------------------------------CCEEEECce----eecccccHHHHHHHHhC
Confidence 459999994 2333433 346899999
Q ss_pred CCCceEeccCCCCCCCCCCCcchhhHhhhhhhhhhhccCCccCCCCCCccccHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Q psy4448 322 PEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTL 401 (487)
Q Consensus 322 PldrlLlETD~P~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~P~~l~~v~~~iA~ikg~~~~~va~~~~~N~~ 401 (487)
|+||||+|||+||+.|.|. .++.++++|+|.+|..|++.||+++|++++++++++++|++
T Consensus 194 pldrlLlETDaP~l~P~~~--------------------~~~~~~~~n~P~~i~~v~~~iA~l~~~~~~~v~~~~~~N~~ 253 (258)
T PRK10425 194 PAERLLLETDAPYLLPRDL--------------------TPKPASRRNEPAFLPHILQRIAHWRGEDAAWLAATTDANAR 253 (258)
T ss_pred ChHHEEEeccCCCCCCCCc--------------------CCCCCCCCCCcHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999887663 01124788999999999999999999999999999999999
Q ss_pred HhcCC
Q psy4448 402 RLFFP 406 (487)
Q Consensus 402 rlf~~ 406 (487)
+||++
T Consensus 254 ~lf~~ 258 (258)
T PRK10425 254 TLFGL 258 (258)
T ss_pred HHhCc
Confidence 99975
No 3
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=100.00 E-value=9.1e-59 Score=460.19 Aligned_cols=255 Identities=27% Similarity=0.400 Sum_probs=226.3
Q ss_pred CcEEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCCHHhHHHHHHHHhcCCCeEEEeecCCCCCC
Q psy4448 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCS 80 (487)
Q Consensus 1 m~~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~la~~~~~v~~avGiHP~~~~ 80 (487)
|.+||+||||+...| ..+.++++++|+++||..++++|+++++|.++++++++||++++++|+|||++.
T Consensus 3 ~~~iD~HcHl~~~~~-----------~~~~~~~l~~a~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~ 71 (258)
T PRK11449 3 CRFIDTHCHFDFPPF-----------SGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAERYQPLYAALGLHPGMLE 71 (258)
T ss_pred ceEEEeccCCCChhh-----------ccCHHHHHHHHHHCCCCEEEEeeCCHHHHHHHHHHHHhCCCEEEEEeeCcCccc
Confidence 569999999998777 579999999999999999999999999999999999999999999999999987
Q ss_pred CcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHH
Q psy4448 81 EFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKE 160 (487)
Q Consensus 81 ~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~ 160 (487)
+.. +..++.+++++..++++++|||||||||++ ...+++.|+++|++||+||.++++||+||+|+|+++++++|++
T Consensus 72 ~~~---~~~~~~l~~~l~~~~~~~~aIGEiGLD~~~-~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~~~~~~il~~ 147 (258)
T PRK11449 72 KHS---DVSLDQLQQALERRPAKVVAVGEIGLDLFG-DDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKR 147 (258)
T ss_pred cCC---HHHHHHHHHHHHhCCCCEEEEEecccCCCC-CCCCHHHHHHHHHHHHHHHHHhCCCEEEEecCccHHHHHHHHh
Confidence 542 355777887775433479999999999987 4457899999999999999999999999999999999999998
Q ss_pred hCCCCCCcEEEEecCCCHHHHHHHHcCccchhHhhhcCCCceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccc
Q psy4448 161 YAPKLPRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKM 240 (487)
Q Consensus 161 ~~~~~~~~~v~H~FsG~~~~a~~~l~~~~g~e~v~~iP~driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (487)
++.. .++|+|||||+.++|++++++
T Consensus 148 ~~~~--~~~i~H~fsG~~~~a~~~l~~----------------------------------------------------- 172 (258)
T PRK11449 148 HDLP--RTGVVHGFSGSLQQAERFVQL----------------------------------------------------- 172 (258)
T ss_pred cCCC--CCeEEEcCCCCHHHHHHHHHC-----------------------------------------------------
Confidence 7542 368999999999999999988
Q ss_pred cCCCChhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHHhCCCCCCCcEEEEeeCCcccccccccch-hhHHHhh
Q psy4448 241 VKSRNEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKTK-ENLETVK 319 (487)
Q Consensus 241 ~~~~n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~~~~~~~~~k~~-~~~e~v~ 319 (487)
|+|+||+|. +++++. +.+++++
T Consensus 173 ----------------------------------------------------G~~iS~~g~-----it~~~~~~~~~~~~ 195 (258)
T PRK11449 173 ----------------------------------------------------GYKIGVGGT-----ITYPRASKTRDVIA 195 (258)
T ss_pred ----------------------------------------------------CCEEEeCcc-----ccccCcHHHHHHHH
Confidence 459999994 666544 4569999
Q ss_pred hCCCCceEeccCCCCCCCCCCCcchhhHhhhhhhhhhhccCCccCCCCCCccccHHHHHHHHHHhhCCCHHHHHHHHHHH
Q psy4448 320 SIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQN 399 (487)
Q Consensus 320 ~iPldrlLlETD~P~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~P~~l~~v~~~iA~ikg~~~~~va~~~~~N 399 (487)
.+|+||||+|||+||+.|.|. ++++|+|.++..+++.||++++++++++++++++|
T Consensus 196 ~ipldriL~ETD~P~l~p~~~------------------------~~~~n~p~~~~~~~~~ia~l~~~~~~el~~~~~~N 251 (258)
T PRK11449 196 KLPLASLLLETDAPDMPLNGF------------------------QGQPNRPEQAARVFDVLCELRPEPADEIAEVLLNN 251 (258)
T ss_pred hCChhhEEEecCCCCCCCCCC------------------------CCCCCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 999999999999999866543 47899999999999999999999999999999999
Q ss_pred HHHhcCC
Q psy4448 400 TLRLFFP 406 (487)
Q Consensus 400 ~~rlf~~ 406 (487)
+.+||++
T Consensus 252 ~~~lf~~ 258 (258)
T PRK11449 252 TYTLFNV 258 (258)
T ss_pred HHHHhCc
Confidence 9999974
No 4
>PRK10812 putative DNAse; Provisional
Probab=100.00 E-value=8.8e-59 Score=461.86 Aligned_cols=256 Identities=27% Similarity=0.407 Sum_probs=226.5
Q ss_pred CcEEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCCHHhHHHHHHHHhcCCCeEEEeecCCCCCC
Q psy4448 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCS 80 (487)
Q Consensus 1 m~~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~la~~~~~v~~avGiHP~~~~ 80 (487)
|++||+||||++..|. .+..|+++++++|+++||..++++|+++++|.++++++++||++++++|+|||++.
T Consensus 1 ~~~iDtH~Hl~~~~~~--------~~~~d~~~vl~~a~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~ 72 (265)
T PRK10812 1 MFLVDSHCHLDGLDYQ--------SLHKDVDDVLAKAAARDVKFCLAVATTLPGYRHMRDLVGERDNVVFSCGVHPLNQD 72 (265)
T ss_pred CceEEeccCCCCccch--------hhhcCHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHhhCCCeEEEEEeCCCCCC
Confidence 8999999999853221 11579999999999999999999999999999999999999999999999999985
Q ss_pred CcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHH
Q psy4448 81 EFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKE 160 (487)
Q Consensus 81 ~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~ 160 (487)
. +..++.|++++.. ++++|||||||||++ ...+.+.|+++|++||++|+++++||+||+|+|+++++++|++
T Consensus 73 ~-----~~~~~~l~~~~~~--~~vvaIGEiGLD~~~-~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~a~~~~l~iL~~ 144 (265)
T PRK10812 73 E-----PYDVEELRRLAAE--EGVVAMGETGLDYYY-TPETKVRQQESFRHHIQIGRELNKPVIVHTRDARADTLAILRE 144 (265)
T ss_pred C-----hhHHHHHHHHhcC--CCEEEEEeeecCcCC-CCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCchHHHHHHHHh
Confidence 3 2347788888765 689999999999987 5567899999999999999999999999999999999999998
Q ss_pred hCCCCCCcEEEEecCCCHHHHHHHHcCccchhHhhhcCCCceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccc
Q psy4448 161 YAPKLPRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKM 240 (487)
Q Consensus 161 ~~~~~~~~~v~H~FsG~~~~a~~~l~~~~g~e~v~~iP~driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (487)
++... .++|+|||+|+.+++++++++
T Consensus 145 ~~~~~-~~~v~H~fsG~~~~a~~~~~~----------------------------------------------------- 170 (265)
T PRK10812 145 EKVTD-CGGVLHCFTEDRETAGKLLDL----------------------------------------------------- 170 (265)
T ss_pred hcCCC-CCEEEEeecCCHHHHHHHHHC-----------------------------------------------------
Confidence 75432 378999999999999999987
Q ss_pred cCCCChhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHHhCCCCCCCcEEEEeeCCcccccccccchhh-HHHhh
Q psy4448 241 VKSRNEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKTKEN-LETVK 319 (487)
Q Consensus 241 ~~~~n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~~~~~~~~~k~~~~-~e~v~ 319 (487)
|+|+||+|. +++++.+. +++++
T Consensus 171 ----------------------------------------------------G~~is~~g~-----~t~~~~~~~~~~~~ 193 (265)
T PRK10812 171 ----------------------------------------------------GFYISFSGI-----VTFRNAEQLRDAAR 193 (265)
T ss_pred ----------------------------------------------------CCEEEECee-----eecCccHHHHHHHH
Confidence 459999994 67766554 48999
Q ss_pred hCCCCceEeccCCCCCCCCCCCcchhhHhhhhhhhhhhccCCccCCCCCCccccHHHHHHHHHHhhCCCHHHHHHHHHHH
Q psy4448 320 SIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQN 399 (487)
Q Consensus 320 ~iPldrlLlETD~P~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~P~~l~~v~~~iA~ikg~~~~~va~~~~~N 399 (487)
.+|+||||+|||+||+.|.|. ++++|+|.+|..|++.+|+++|++.+++++++++|
T Consensus 194 ~ipldrlLlETD~P~~~p~~~------------------------~g~~n~P~~i~~v~~~ia~l~g~~~eei~~~~~~N 249 (265)
T PRK10812 194 YVPLDRLLVETDSPYLAPVPH------------------------RGKENQPAMVRDVAEYMAVLKGVSVEELAQVTTDN 249 (265)
T ss_pred hCChhhEEEecCCCCCCCcCC------------------------CCCCCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999877664 48899999999999999999999999999999999
Q ss_pred HHHhcCCC
Q psy4448 400 TLRLFFPH 407 (487)
Q Consensus 400 ~~rlf~~~ 407 (487)
+++||++.
T Consensus 250 ~~~lf~~~ 257 (265)
T PRK10812 250 FARLFHID 257 (265)
T ss_pred HHHHHCCC
Confidence 99999884
No 5
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=100.00 E-value=2.9e-55 Score=434.38 Aligned_cols=253 Identities=38% Similarity=0.592 Sum_probs=213.2
Q ss_pred EEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCCHHhHHHHHHHHhcCCC-eEEEeecCCCCCCCc
Q psy4448 4 IDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDER-LYSTVGCHPTRCSEF 82 (487)
Q Consensus 4 iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~la~~~~~-v~~avGiHP~~~~~~ 82 (487)
||+|||+++..| ..+.+++++++.++|+..++++++++++|+.+.++++++|. +++++|+|||++...
T Consensus 1 iD~H~Hl~~~~~-----------~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~GiHP~~~~~~ 69 (255)
T PF01026_consen 1 IDAHCHLDSPRF-----------EEDRPEVLERAREAGVSAIIIVSTDPEDWERVLELASQYPDRVYPALGIHPWEAHEV 69 (255)
T ss_dssp EEEEE-TTSGGG-----------TTTHHHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHHHTTTEEEEEE---GGGGGGH
T ss_pred CcCccCCCChhh-----------CcCHHHHHHHHHHcCCCEEEEcCCCHHHhHHHHHHHhcCCCeEEEEecCCcchhhhh
Confidence 899999999666 57899999999999999999999999999999999999997 999999999999864
Q ss_pred CCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHhC
Q psy4448 83 ENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYA 162 (487)
Q Consensus 83 ~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~~ 162 (487)
. +++++.|+++...+.++++|||||||||++....+.+.|+++|++||+||.++++||+||||+|+++++++|+++.
T Consensus 70 ~---~~~~~~l~~l~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a~~~~l~il~~~~ 146 (255)
T PF01026_consen 70 N---EEDLEELEELINLNRPKVVAIGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRKAHEELLEILKEYG 146 (255)
T ss_dssp S---HHHHHHHHHHHHHTSTTEEEEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEESHHHHHHHHHHHTT
T ss_pred h---HHHHHHHHHHHHhccccceeeeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCCcHHHHHHHHHhcc
Confidence 2 4556777777222337899999999999765678899999999999999999999999999999999999999997
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHcCccchhHhhhcCCCceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccccC
Q psy4448 163 PKLPRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVK 242 (487)
Q Consensus 163 ~~~~~~~v~H~FsG~~~~a~~~l~~~~g~e~v~~iP~driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (487)
... .++|+|||+|+.+++++++++
T Consensus 147 ~~~-~~~i~H~f~g~~~~~~~~~~~------------------------------------------------------- 170 (255)
T PF01026_consen 147 PPN-LRVIFHCFSGSPEEAKKFLDL------------------------------------------------------- 170 (255)
T ss_dssp GGT-SEEEETT--S-HHHHHHHHHT-------------------------------------------------------
T ss_pred ccc-eeEEEecCCCCHHHHHHHHhc-------------------------------------------------------
Confidence 422 379999999999999998876
Q ss_pred CCChhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHHhCCCCCCCcEEEEeeCCccccccccc-chhhHHHhhhC
Q psy4448 243 SRNEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLK-TKENLETVKSI 321 (487)
Q Consensus 243 ~~n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~~~~~~~~~k-~~~~~e~v~~i 321 (487)
|+|+||||. ++.+ +.+.+++++.+
T Consensus 171 --------------------------------------------------g~~~S~~~~-----~~~~~~~~~~~~~~~i 195 (255)
T PF01026_consen 171 --------------------------------------------------GCYFSFSGA-----ITFKNSKKVRELIKAI 195 (255)
T ss_dssp --------------------------------------------------TEEEEEEGG-----GGSTTSHHHHHHHHHS
T ss_pred --------------------------------------------------CceEEeccc-----ccccccHHHHHHHhcC
Confidence 579999993 4444 34567999999
Q ss_pred CCCceEeccCCCCCCCCCCCcchhhHhhhhhhhhhhccCCccCCCCCCccccHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Q psy4448 322 PEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTL 401 (487)
Q Consensus 322 PldrlLlETD~P~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~P~~l~~v~~~iA~ikg~~~~~va~~~~~N~~ 401 (487)
|+||||+|||+||+.+.|. ++.+|+|.+|..|++.+|+++|++.+++++++++|++
T Consensus 196 p~drillETD~P~~~~~~~------------------------~~~~~~p~~i~~~~~~la~~~~~~~e~~~~~~~~N~~ 251 (255)
T PF01026_consen 196 PLDRILLETDAPYLAPDPY------------------------RGKPNEPSNIPKVAQALAEIKGISLEELAQIIYENAK 251 (255)
T ss_dssp -GGGEEEE-BTTSSECTTS------------------------TTSE--GGGHHHHHHHHHHHHTSTHHHHHHHHHHHHH
T ss_pred ChhhEEEcCCCCcCCcccc------------------------CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999887664 3678999999999999999999999999999999999
Q ss_pred HhcC
Q psy4448 402 RLFF 405 (487)
Q Consensus 402 rlf~ 405 (487)
|||+
T Consensus 252 r~f~ 255 (255)
T PF01026_consen 252 RLFG 255 (255)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 9996
No 6
>KOG3020|consensus
Probab=100.00 E-value=3.7e-53 Score=419.83 Aligned_cols=275 Identities=45% Similarity=0.696 Sum_probs=244.7
Q ss_pred cEEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCCHHhHHHHHHHHhcC-CCeEEEeecCCCCCC
Q psy4448 2 KYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSD-ERLYSTVGCHPTRCS 80 (487)
Q Consensus 2 ~~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~la~~~-~~v~~avGiHP~~~~ 80 (487)
|++|.|+|+..... ..+.+.++.+|...||..++++|++..+|+.++++++++ +.+++++|+|||++.
T Consensus 17 ~~~~~~~~~~~~~~-----------~~d~s~v~~~a~~~~v~~~~v~gt~~~d~~~~~~l~~~y~~~v~~t~G~HP~~~~ 85 (296)
T KOG3020|consen 17 MLEDIYCHIQAHPS-----------DSDASQVLERAVQAGVSKLIVTGTSLKDSKEALELAEKYPGSVYPTFGVHPHFSQ 85 (296)
T ss_pred hhchhhhccccCCC-----------CccchHHHHHHHhccceEEEEeCCCcchHHHHHHHHhhCCCceeeccCcCCCccc
Confidence 46788888877654 567788999999999999999999999999999999999 789999999999999
Q ss_pred CcCCC--chhhHHHHHHHHHh-cCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchHHHHHH
Q psy4448 81 EFEND--PEGYLQSLDKIIKE-GGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEI 157 (487)
Q Consensus 81 ~~~~~--~~~~l~~L~~ll~~-~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l~i 157 (487)
++.+. .+.+++.|..++.+ ..++++|||||||||.+..+++.+.|+.+|++|++||.++++|++||||+|++|+++|
T Consensus 86 ~~~~~~~~~~~~~~L~~~~~~~~~~k~vAiGEcGLD~~r~~~~~~~~Qk~vFekQl~LA~~~~~Pl~iH~r~a~~d~~eI 165 (296)
T KOG3020|consen 86 EFSDQSRKEKFLDTLLSIIENGFLPKVVAIGECGLDYDRLQFSDKEEQKTVFEKQLDLAKRLKLPLFIHCRSAHEDLLEI 165 (296)
T ss_pred chhhccchhhHHHHHHHHHhhcccCCeEEeeccccccchhccCChHHHHHHHHHHHHHHHHccCCeeeechhhhHHHHHH
Confidence 88531 23468888888876 2368999999999998855889999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCcEEEEecCCCHHHHHHHHcCccchhHhhhcCCCceeeccCCCCCCCCCCCcccchhcccchhhhhhccCC
Q psy4448 158 MKEYAPKLPRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKP 237 (487)
Q Consensus 158 Lk~~~~~~~~~~v~H~FsG~~~~a~~~l~~~~g~e~v~~iP~driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (487)
++++....+.++|+|||+|+.+++++++++
T Consensus 166 l~~~~~~~~~~vvvHsFtGs~e~~~~~lk~-------------------------------------------------- 195 (296)
T KOG3020|consen 166 LKRFLPECHKKVVVHSFTGSAEEAQKLLKL-------------------------------------------------- 195 (296)
T ss_pred HHHhccccCCceEEEeccCCHHHHHHHHHc--------------------------------------------------
Confidence 999976553379999999999999999987
Q ss_pred ccccCCCChhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHHhCCCCCCCcEEEEeeCCcccccccccchhhHHH
Q psy4448 238 DKMVKSRNEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKTKENLET 317 (487)
Q Consensus 238 ~~~~~~~n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~~~~~~~~~k~~~~~e~ 317 (487)
|+|+|||| +++++.++.++
T Consensus 196 -------------------------------------------------------~~yig~~g------~~~k~~e~~~v 214 (296)
T KOG3020|consen 196 -------------------------------------------------------GLYIGFTG------CSLKTEENLEV 214 (296)
T ss_pred -------------------------------------------------------cEEecccc------eeeechhhHHH
Confidence 36999999 89999999999
Q ss_pred hhhCCCCceEeccCCCCCCCCC-CCcchhhHhhhhhhhhhhccCCccCCCCCCccccHHHHHHHHHHhhCCCHHHHHHHH
Q psy4448 318 VKSIPEDRLLLETDCPWCEVKP-SHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPII 396 (487)
Q Consensus 318 v~~iPldrlLlETD~P~~~~~p-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~P~~l~~v~~~iA~ikg~~~~~va~~~ 396 (487)
+++||+||||+|||+|||.|++ .|++++|+.+... ......++|+|+++.++++.+|++++++.+++++++
T Consensus 215 lr~iP~erlllETDsP~~~pk~~~~~~~~~~~~~~~--------~~~~~~~~neP~~~~~~~e~va~~k~~~~ee~~~~~ 286 (296)
T KOG3020|consen 215 LRSIPLERLLLETDSPYCGPKPSSHAGPKYVKTLFS--------ESYPLKGRNEPCNVLQVAEVVAEAKDLDLEEVAEAT 286 (296)
T ss_pred HhhCCHhHeeeccCCccccCCccccccchhhhhhhh--------hhccccccCCchHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 9999999999999999999999 8999999888532 223346899999999999999999999999999999
Q ss_pred HHHHHHhcCC
Q psy4448 397 HQNTLRLFFP 406 (487)
Q Consensus 397 ~~N~~rlf~~ 406 (487)
++|+.|||+.
T Consensus 287 ~~Nt~rl~~~ 296 (296)
T KOG3020|consen 287 YENTIRLFKL 296 (296)
T ss_pred HHHHHHHhcC
Confidence 9999999974
No 7
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=100.00 E-value=2.8e-40 Score=323.53 Aligned_cols=251 Identities=35% Similarity=0.545 Sum_probs=214.2
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCCHHhHHHHHHHHhcCCCeEEEeecCCCCCCCc
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCSEF 82 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~la~~~~~v~~avGiHP~~~~~~ 82 (487)
+||+|||+++..+ ..+++++++++.++|++.++++++++.+++.+.++++++|++++++|+|||+....
T Consensus 1 ~iD~H~Hl~~~~~-----------~~~~~~~~~~~~~~Gv~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~GihP~~~~~~ 69 (252)
T TIGR00010 1 LIDAHCHLDFLDF-----------EEDVEEVIERAKAAGVTAVVAVGTDLEDFLRALELAEKYPNVYAAVGVHPLDVDDD 69 (252)
T ss_pred CEEeccCCCChhh-----------ccCHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHCCCEEEEEEeCcchhhcC
Confidence 6999999997654 34799999999999999999999999999999999999999999999999987643
Q ss_pred CCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHhC
Q psy4448 83 ENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYA 162 (487)
Q Consensus 83 ~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~~ 162 (487)
.+..++++++++.+ +++++|||||||++. .....+.|.++|++|+++|+++++||++|++++..++++++++++
T Consensus 70 ---~~~~~~~l~~~l~~--~~~~~iGEiGld~~~-~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~~~~~~~~~l~~~~ 143 (252)
T TIGR00010 70 ---TKEDIKELERLAAH--PKVVAIGETGLDYYK-ADEYKRRQEEVFRAQLQLAEELNLPVIIHARDAEEDVLDILREEK 143 (252)
T ss_pred ---CHHHHHHHHHHccC--CCEEEEEecccCcCC-CCCCHHHHHHHHHHHHHHHHHhCCCeEEEecCccHHHHHHHHhcC
Confidence 13567788888865 689999999999865 333467899999999999999999999999999999999999986
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHcCccchhHhhhcCCCceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccccC
Q psy4448 163 PKLPRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVK 242 (487)
Q Consensus 163 ~~~~~~~v~H~FsG~~~~a~~~l~~~~g~e~v~~iP~driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (487)
.. ..+++|||+|+.+.+++++++
T Consensus 144 ~~--~~~i~H~~~~~~~~~~~~~~~------------------------------------------------------- 166 (252)
T TIGR00010 144 PK--VGGVLHCFTGDAELAKKLLDL------------------------------------------------------- 166 (252)
T ss_pred CC--CCEEEEccCCCHHHHHHHHHC-------------------------------------------------------
Confidence 32 478999999999888887765
Q ss_pred CCChhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHHhCCCCCCCcEEEEeeCCcccccccccch-hhHHHhhhC
Q psy4448 243 SRNEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKTK-ENLETVKSI 321 (487)
Q Consensus 243 ~~n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~~~~~~~~~k~~-~~~e~v~~i 321 (487)
|+|+||++. .++++. ..+++++.+
T Consensus 167 --------------------------------------------------g~~~~~~~~-----~~~~~~~~~~~~i~~~ 191 (252)
T TIGR00010 167 --------------------------------------------------GFYISISGI-----VTFKNAKSLREVVRKI 191 (252)
T ss_pred --------------------------------------------------CCeEeecee-----EecCCcHHHHHHHHhC
Confidence 569999983 333333 346899999
Q ss_pred CCCceEeccCCCCCCCCCCCcchhhHhhhhhhhhhhccCCccCCCCCCccccHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Q psy4448 322 PEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTL 401 (487)
Q Consensus 322 PldrlLlETD~P~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~P~~l~~v~~~iA~ikg~~~~~va~~~~~N~~ 401 (487)
|.||||+|||+||+.+.+. ++..|.|.++..+++.+|.++|++.+++.+++++|+.
T Consensus 192 ~~dril~~TD~p~~~~~~~------------------------~~~~~~p~~i~~~~~~~a~~~g~~~~~~~~~~~~N~~ 247 (252)
T TIGR00010 192 PLERLLVETDSPYLAPVPY------------------------RGKRNEPAFVRYTVEAIAEIKGMDVEELAQITTKNAK 247 (252)
T ss_pred CHHHeEecccCCCCCCCCC------------------------CCCCCCChhHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 9999999999999654321 3667899999999999999999999999999999999
Q ss_pred HhcCC
Q psy4448 402 RLFFP 406 (487)
Q Consensus 402 rlf~~ 406 (487)
++|++
T Consensus 248 ~~~~~ 252 (252)
T TIGR00010 248 RLFGL 252 (252)
T ss_pred HHhCc
Confidence 99975
No 8
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=100.00 E-value=8.6e-39 Score=312.45 Aligned_cols=250 Identities=40% Similarity=0.627 Sum_probs=211.7
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCCHHhHHHHHHHHhcCCCeEEEeecCCCCCCCc
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCSEF 82 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~la~~~~~v~~avGiHP~~~~~~ 82 (487)
+||+|||++...+ ..+.+++++++.+.||..++++++++.+++++.+++++++++++++|+||+++...
T Consensus 1 ~~D~H~H~~~~~~-----------~~~~~~~l~~~~~~gv~~~v~~~~~~~~~~~~~~la~~~~~i~~~~G~hP~~~~~~ 69 (251)
T cd01310 1 LIDTHCHLDFPQF-----------DADRDDVLARAREAGVIKIIVVGTDLKSSKRALELAKKYDNVYAAVGLHPHDADEH 69 (251)
T ss_pred CEEeeeCCCchhh-----------ccCHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHhCCCeEEEEeeCcchhhcC
Confidence 6999999997543 35788999999999999999999999999999999999999999999999998654
Q ss_pred CCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHhC
Q psy4448 83 ENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYA 162 (487)
Q Consensus 83 ~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~~ 162 (487)
. +..++.+++++.. +.+++|||||||+++ ...+.+.|.++|+.|+++|+++++||+|||+++..++++++++++
T Consensus 70 ~---~~~~~~l~~~~~~--~~~~~IGeiGld~~~-~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~~~~~~~~l~~~~~ 143 (251)
T cd01310 70 V---DEDLDLLELLAAN--PKVVAIGEIGLDYYR-DKSPREVQKEVFRAQLELAKELNLPVVIHSRDAHEDVLEILKEYG 143 (251)
T ss_pred C---HHHHHHHHHHhcC--CCEEEEEeeecCcCC-CCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCchHHHHHHHHhcC
Confidence 2 3456788888865 579999999999876 333678999999999999999999999999999999999999996
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHcCccchhHhhhcCCCceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccccC
Q psy4448 163 PKLPRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVK 242 (487)
Q Consensus 163 ~~~~~~~v~H~FsG~~~~a~~~l~~~~g~e~v~~iP~driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (487)
.. ..+|+|||+|+.++++++++.
T Consensus 144 ~~--~~~i~H~~~~~~~~~~~~~~~------------------------------------------------------- 166 (251)
T cd01310 144 PP--KRGVFHCFSGSAEEAKELLDL------------------------------------------------------- 166 (251)
T ss_pred CC--CCEEEEccCCCHHHHHHHHHc-------------------------------------------------------
Confidence 22 479999999998777766543
Q ss_pred CCChhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHHhCCCCCCCcEEEEeeCCcccccccccc-hhhHHHhhhC
Q psy4448 243 SRNEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKT-KENLETVKSI 321 (487)
Q Consensus 243 ~~n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~~~~~~~~~k~-~~~~e~v~~i 321 (487)
|+|+++++. ....+ ...+++++.+
T Consensus 167 --------------------------------------------------g~~~~~~~~-----~~~~~~~~~~~~~~~~ 191 (251)
T cd01310 167 --------------------------------------------------GFYISISGI-----VTFKNANELREVVKEI 191 (251)
T ss_pred --------------------------------------------------CCEEEeeee-----eccCCCHHHHHHHHhC
Confidence 569999983 22222 2356899999
Q ss_pred CCCceEeccCCCCCCCCCCCcchhhHhhhhhhhhhhccCCccCCCCCCccccHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Q psy4448 322 PEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTL 401 (487)
Q Consensus 322 PldrlLlETD~P~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~P~~l~~v~~~iA~ikg~~~~~va~~~~~N~~ 401 (487)
|.||||+|||+||..+... .++.+.|.++..++..+|+.+|++.+++.++++.|+.
T Consensus 192 ~~dril~~TD~p~~~~~~~------------------------~~~~~~~~~~~~~~~~la~~~gl~~e~~~~~~~~N~~ 247 (251)
T cd01310 192 PLERLLLETDSPYLAPVPF------------------------RGKRNEPAYVKHVAEKIAELKGISVEEVAEVTTENAK 247 (251)
T ss_pred ChHHEEEcccCCCCCCCCC------------------------CCCCCCChhHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999643321 2567899999999999999999999999999999999
Q ss_pred HhcC
Q psy4448 402 RLFF 405 (487)
Q Consensus 402 rlf~ 405 (487)
++|+
T Consensus 248 ~ll~ 251 (251)
T cd01310 248 RLFG 251 (251)
T ss_pred HHhC
Confidence 9985
No 9
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=99.97 E-value=1.4e-30 Score=261.90 Aligned_cols=234 Identities=18% Similarity=0.125 Sum_probs=181.5
Q ss_pred HHHHHHHhcCCCEEEEECCC--HHhHHHHHHHHhcCC-CeEEEeecCCCCCCC--cCCC-chhhHHHHHHHHH----hcC
Q psy4448 32 HVLNRAWNAGLEKIIVTGTN--VEDSISSLKLAQSDE-RLYSTVGCHPTRCSE--FEND-PEGYLQSLDKIIK----EGG 101 (487)
Q Consensus 32 ~vl~ra~~~GV~~ii~v~~~--~~~~~~~~~la~~~~-~v~~avGiHP~~~~~--~~~~-~~~~l~~L~~ll~----~~~ 101 (487)
..+++++++||+.++.++++ ..++..+.+++++++ ++++++|+||+.... ...+ .++..+.+.+.+. ...
T Consensus 36 ~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~~~~g~~v~~~~G~hp~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 115 (293)
T cd00530 36 EELKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNIVAATGFYKDAFYPEWVRLRSVEELTDMLIREIEEGIEGTG 115 (293)
T ss_pred HHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHHHHhCCcEEEecccCCCccChHHHhhCCHHHHHHHHHHHHHhccccCC
Confidence 46788899999999999986 478999999999988 899999999987531 1000 1111112222222 111
Q ss_pred CCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC---chHHHHHHHHHhCCCCCCcEEEEec-CCC
Q psy4448 102 KKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN---AKSDFIEIMKEYAPKLPRKGVIHSF-DGT 177 (487)
Q Consensus 102 ~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~---a~~d~l~iLk~~~~~~~~~~v~H~F-sG~ 177 (487)
-++++|||||||+. ..+.|+++|++|+++|+++++||+||+++ +.++++++|++.+...+..++.||| +++
T Consensus 116 i~~~~IGEigld~~-----~~~~q~~~f~~~~~lA~~~~~Pv~iH~~~~~~~~~~~l~~l~~~g~~~~~~vi~H~~~~~~ 190 (293)
T cd00530 116 IKAGIIKEAGGSPA-----ITPLEEKVLRAAARAQKETGVPISTHTQAGLTMGLEQLRILEEEGVDPSKVVIGHLDRNDD 190 (293)
T ss_pred cCceEEEEeecCCC-----CCHHHHHHHHHHHHHHHHHCCeEEEcCCCCccccHHHHHHHHHcCCChhheEEeCCCCCCC
Confidence 14578999999973 34899999999999999999999999997 8999999999875432112688999 788
Q ss_pred HHHHHHHHcCccchhHhhhcCCCceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccccCCCChhhhHHHHHHHH
Q psy4448 178 PFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVYFRKQL 257 (487)
Q Consensus 178 ~~~a~~~l~~~~g~e~v~~iP~driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~P~Q~~~F~~ql 257 (487)
.+.+++++++
T Consensus 191 ~~~~~~~~~~---------------------------------------------------------------------- 200 (293)
T cd00530 191 PDYLLKIAAL---------------------------------------------------------------------- 200 (293)
T ss_pred HHHHHHHHhC----------------------------------------------------------------------
Confidence 9888888876
Q ss_pred HHhhhCCCCEEEEeccchHHHHHHHHHhCCCCCCCcEEEEeeCCccccccccc---------chh-hHHHhhhCCCCceE
Q psy4448 258 DLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLK---------TKE-NLETVKSIPEDRLL 327 (487)
Q Consensus 258 ~lA~~~~lPl~iH~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~~~~~~~~~k---------~~~-~~e~v~~iPldrlL 327 (487)
|+|++|+|. .+++ ..+ .+++++.+|+||||
T Consensus 201 -----------------------------------G~~i~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~d~il 240 (293)
T cd00530 201 -----------------------------------GAYLEFDGI-----GKDKIFGYPSDETRADAVKALIDEGYGDRLL 240 (293)
T ss_pred -----------------------------------CCEEEeCCC-----CcccccCCCCHHHHHHHHHHHHHCCCcCCEE
Confidence 458888884 2222 222 34788999999999
Q ss_pred eccCCCCCCCCCCCcchhhHhhhhhhhhhhccCCccCCCCCCccccHHHHHHHHHHhhCCCHHHHHHHHHHHHHHhc
Q psy4448 328 LETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404 (487)
Q Consensus 328 lETD~P~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~P~~l~~v~~~iA~ikg~~~~~va~~~~~N~~rlf 404 (487)
+|||+||+.+.|. ++++|.|.++..++..+++.+|++.+++.+++++|..++|
T Consensus 241 l~TD~p~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~g~~~e~i~~~~~~N~~~lf 293 (293)
T cd00530 241 LSHDVFRKSYLEK------------------------RYGGHGYDYILTRFIPRLRERGVTEEQLDTILVENPARFL 293 (293)
T ss_pred EeCCcCchhhhhh------------------------ccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHhC
Confidence 9999999654432 3678999999999999999999999999999999999987
No 10
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=99.94 E-value=9.2e-26 Score=212.91 Aligned_cols=233 Identities=24% Similarity=0.381 Sum_probs=176.0
Q ss_pred cEEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCCH----------HhHHHHHHH----HhcCC-
Q psy4448 2 KYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNV----------EDSISSLKL----AQSDE- 66 (487)
Q Consensus 2 ~~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~~----------~~~~~~~~l----a~~~~- 66 (487)
|+||+|.|++.+.| +| +..|..+||..++.++.+| ..|++++.. +++++
T Consensus 1 ~~iD~HiH~d~r~~------------eD----lekMa~sGI~~Vit~AhdP~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl 64 (254)
T COG1099 1 MYIDSHIHLDVRGF------------ED----LEKMALSGIREVITLAHDPYPMKTAEVYLDHFRRLLGVEPERAEKAGL 64 (254)
T ss_pred CccccccccccccH------------HH----HHHHHHhChhhhhhcccCCCCcccHHHHHHHHHHHHccchhhHHhhCc
Confidence 68999999998766 34 3678899999999988765 345555433 44444
Q ss_pred CeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEE
Q psy4448 67 RLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLH 146 (487)
Q Consensus 67 ~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH 146 (487)
++++|+|+||..++.. .+..++.|++++.+ +.+|||||||||+-. +..+++|+.||+||++++.|||||
T Consensus 65 ~~~vavGvHPr~iP~e---~~~~l~~L~~~l~~--e~VvAiGEiGLe~~t------~~E~evf~~QL~LA~e~dvPviVH 133 (254)
T COG1099 65 KLKVAVGVHPRAIPPE---LEEVLEELEELLSN--EDVVAIGEIGLEEAT------DEEKEVFREQLELARELDVPVIVH 133 (254)
T ss_pred eeeEEeccCCCCCCch---HHHHHHHHHhhccc--CCeeEeeecccccCC------HHHHHHHHHHHHHHHHcCCcEEEe
Confidence 6899999999888643 45678888888874 689999999999643 558999999999999999999999
Q ss_pred ecC-----chHHHHHHHHHhCCCCCCcEEE-EecCCCHHHHHHHHcCccchhHhhhcCCCceeeccCCCCCCCCCCCccc
Q psy4448 147 CRN-----AKSDFIEIMKEYAPKLPRKGVI-HSFDGTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGF 220 (487)
Q Consensus 147 ~r~-----a~~d~l~iLk~~~~~~~~~~v~-H~FsG~~~~a~~~l~~~~g~e~v~~iP~driLlETD~P~l~~~~~~~~~ 220 (487)
+.+ +...+++++.+.+... ..+|+ |+ +.+++...|+.
T Consensus 134 TPr~nK~e~t~~ildi~~~~~l~~-~lvvIDH~---N~etv~~vld~--------------------------------- 176 (254)
T COG1099 134 TPRRNKKEATSKILDILIESGLKP-SLVVIDHV---NEETVDEVLDE--------------------------------- 176 (254)
T ss_pred CCCCcchhHHHHHHHHHHHcCCCh-hheehhcc---cHHHHHHHHhc---------------------------------
Confidence 976 4668899998776543 23444 65 77777777765
Q ss_pred chhcccchhhhhhccCCccccCCCChhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHHhCCCCCCCcEEEEeeC
Q psy4448 221 AYIRTQHEKVKKEQWKPDKMVKSRNEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDG 300 (487)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~~~~~~~~gv~hsfsG 300 (487)
++|.|++-
T Consensus 177 ------------------------------------------------------------------------e~~vGlTv 184 (254)
T COG1099 177 ------------------------------------------------------------------------EFYVGLTV 184 (254)
T ss_pred ------------------------------------------------------------------------cceEEEEe
Confidence 34666665
Q ss_pred CcccccccccchhhHHHhhhCCCCceEeccCCCCCCCCCCCcchhhHhhhhhhhhhhccCCccCCCCCCccccHHHHHHH
Q psy4448 301 TPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEI 380 (487)
Q Consensus 301 ~~~~~~~~~k~~~~~e~v~~iPldrlLlETD~P~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~P~~l~~v~~~ 380 (487)
.+ --+...+..++++....+||++-||+-|..- .|..++.++-.
T Consensus 185 qP----gKlt~~eAveIV~ey~~~r~ilnSD~~s~~s--------------------------------d~lavprtal~ 228 (254)
T COG1099 185 QP----GKLTVEEAVEIVREYGAERIILNSDAGSAAS--------------------------------DPLAVPRTALE 228 (254)
T ss_pred cC----CcCCHHHHHHHHHHhCcceEEEecccccccc--------------------------------cchhhhHHHHH
Confidence 22 1122345568999999999999999976321 34455555554
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHhcCCC
Q psy4448 381 VAAVRGVEREKLGPIIHQNTLRLFFPH 407 (487)
Q Consensus 381 iA~ikg~~~~~va~~~~~N~~rlf~~~ 407 (487)
+ +.+|++.+++.+..++|+++||++.
T Consensus 229 m-~~~gv~~~~i~kV~~~NA~~~~~l~ 254 (254)
T COG1099 229 M-EERGVGEEEIEKVVRENALSFYGLS 254 (254)
T ss_pred H-HHhcCCHHHHHHHHHHHHHHHhCcC
Confidence 4 5679999999999999999999873
No 11
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=99.86 E-value=1.7e-20 Score=194.86 Aligned_cols=232 Identities=18% Similarity=0.264 Sum_probs=163.6
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC-CHHhHHHHHHHHhcCC-CeEEEe-----ecC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT-NVEDSISSLKLAQSDE-RLYSTV-----GCH 75 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~-~~~~~~~~~~la~~~~-~v~~av-----GiH 75 (487)
+||+|||+..... ....+++.+ +...||+.++.+++ .+.+++...+++++++ ++++++ |+|
T Consensus 52 ~ID~H~H~~~~~~---------~~~~~~~~~---a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~G~~ 119 (365)
T TIGR03583 52 WIDDHTHCFPKSA---------LYYDEPDEI---GVKTGVTTVVDAGSTGADDIDDFYRLAQQAKTNVFALLNISRIGLV 119 (365)
T ss_pred EEEeeeccCCCcc---------cccCCHhHh---hhcCceeEEEeCCCCCCCCHHHHHHHHHhhCCcEEEEeeehhcccc
Confidence 8999999984321 002344433 56789999887765 6788888888877776 577765 888
Q ss_pred CC-CCCCcCCCchhhHHHHHHHHHhcCCCEEE---------EEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEE
Q psy4448 76 PT-RCSEFENDPEGYLQSLDKIIKEGGKKVVA---------FGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFL 145 (487)
Q Consensus 76 P~-~~~~~~~~~~~~l~~L~~ll~~~~~~vva---------IGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViI 145 (487)
|+ ...+. .+...+.+++++..++..+++ |||+|||- .+ |.+|+..+ ++++||++
T Consensus 120 ~~~~~~~~---~~~~~~~l~~~~~~~~~~vv~~~~~~t~~~i~E~gl~~-------~~-----~~~~l~~~-~~~~pv~v 183 (365)
T TIGR03583 120 AQDELADL---SNLDASAVKQAVERYPDFIVGLKARMSKSVVGDNGIEP-------LE-----IAKQIQQE-NLELPLMV 183 (365)
T ss_pred ChhhhhCh---HHhHHHHHHHHHHhCcCcEEEEEEeecccccccCCcCH-------HH-----HHHHHHHh-cCCCcEEE
Confidence 73 33332 123466777777755334665 79999971 12 45577666 89999999
Q ss_pred EecCchHHHHHHHHHhCCCCCCcEEEEecCCCH-----------HHHHHHHcCccchhHhhhcCCCceeeccCCCCCCCC
Q psy4448 146 HCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTP-----------FQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVK 214 (487)
Q Consensus 146 H~r~a~~d~l~iLk~~~~~~~~~~v~H~FsG~~-----------~~a~~~l~~~~g~e~v~~iP~driLlETD~P~l~~~ 214 (487)
|++++..+..++++..... .++.|||+|+. +.++..+
T Consensus 184 H~~~a~~~~~~i~~~~~~g---~~~~H~fng~~~~~~r~~g~~~~~~~~~l----------------------------- 231 (365)
T TIGR03583 184 HIGSAPPELDEILALMEKG---DVLTHCFNGKPNGILRETGEVKPSVLEAY----------------------------- 231 (365)
T ss_pred EeCCCccCHHHHHHHhcCC---CeeeeeecCCCCCCCCCcchHHHHHHHHH-----------------------------
Confidence 9999999999999876432 58999999985 2222211
Q ss_pred CCCcccchhcccchhhhhhccCCccccCCCChhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHHhCCCCCCCcE
Q psy4448 215 PSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGV 294 (487)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~~~~~~~~gv 294 (487)
..|+
T Consensus 232 ----------------------------------------------------------------------------~~G~ 235 (365)
T TIGR03583 232 ----------------------------------------------------------------------------NRGV 235 (365)
T ss_pred ----------------------------------------------------------------------------hCeE
Confidence 1378
Q ss_pred EEEee-CCcccccccccchhhHHHhhhCCCCceEeccCCCCCCCCCCCcchhhHhhhhhhhhhhccCCccCCCCCCcccc
Q psy4448 295 IHSFD-GTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPAN 373 (487)
Q Consensus 295 ~hsfs-G~~~~~~~~~k~~~~~e~v~~iPldrlLlETD~P~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~P~~ 373 (487)
+++++ |. .++. -+....++ -+++++|||+|++. . ++++|.|.+
T Consensus 236 i~d~~hg~-----~~~~-~~~~~~~~---~~~~~~~td~~d~~---~------------------------~~~~~gp~~ 279 (365)
T TIGR03583 236 ILDVGHGT-----ASFS-FHVAEKAK---RAGIFPDTISTDIY---I------------------------RNRINGPVY 279 (365)
T ss_pred EEEeCCCC-----CCch-HHHHHHHH---hCCCCCcccccccc---c------------------------CCCccCccc
Confidence 88888 74 3331 11222222 26889999999851 1 256889998
Q ss_pred -HHHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCCC
Q psy4448 374 -IVQILEIVAAVRGVEREKLGPIIHQNTLRLFFPH 407 (487)
Q Consensus 374 -l~~v~~~iA~ikg~~~~~va~~~~~N~~rlf~~~ 407 (487)
+..+++.++ .+|++.+++++.++.|..++|++.
T Consensus 280 ~l~~~~~~~~-~~g~~~~ea~~~~t~npa~~~gl~ 313 (365)
T TIGR03583 280 SLATVMSKFL-ALGYSLEEVIEKVTKNAAEILKLT 313 (365)
T ss_pred cHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhCCC
Confidence 999999999 689999999999999999999986
No 12
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=99.70 E-value=1.8e-15 Score=147.02 Aligned_cols=161 Identities=22% Similarity=0.224 Sum_probs=120.6
Q ss_pred CcEEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC----------CHHhHHHHHHH-------Hh
Q psy4448 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT----------NVEDSISSLKL-------AQ 63 (487)
Q Consensus 1 m~~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~----------~~~~~~~~~~l-------a~ 63 (487)
|.++|.|.|++... .+..+++.+++++|.+.+++++. +.++++++.+. ++
T Consensus 5 ~~v~DnH~H~np~~-------------gg~~ea~~~F~rAGGt~~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r 71 (285)
T COG1831 5 IPVTDNHFHLNPKN-------------GGALEAARRFHRAGGTHLILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIR 71 (285)
T ss_pred cceecceeeecCCc-------------CcHHHHHHHHHHcCCcEEEEeecccccccCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 45899999999842 35778999999999999988743 45677765443 22
Q ss_pred -cCCC-eEEEeecCCCCCCCcCCC---chhh-------HHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHH
Q psy4448 64 -SDER-LYSTVGCHPTRCSEFEND---PEGY-------LQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRK 131 (487)
Q Consensus 64 -~~~~-v~~avGiHP~~~~~~~~~---~~~~-------l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~ 131 (487)
..+. +++.+|+||-....+.+. +++. ++...+++.+ .+++||||+|-.+|++...-++...++|+.
T Consensus 72 ~e~~~~~~~vvGvHPaE~~~l~e~~~~peea~e~m~~~lelA~k~v~e--g~avaiGEvGrPHypVs~~v~~~~n~vl~~ 149 (285)
T COG1831 72 EEGPVEAYAVVGVHPAEVSRLAEAGRSPEEALEEMRHALELAAKLVEE--GKAVAIGEVGRPHYPVSEEVWEASNEVLEY 149 (285)
T ss_pred HhcCceeEEEeccCHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHhc--cceeeeeccCCCCCCCCHHHHHHHHHHHHH
Confidence 2343 799999999776543211 1222 3445566776 689999999999998776678999999999
Q ss_pred HHHHhhhCCCCEEEEecCc----hHHHHHHHHHhCCCCCCcEEEEecCCC
Q psy4448 132 QLDLSVTHKLPLFLHCRNA----KSDFIEIMKEYAPKLPRKGVIHSFDGT 177 (487)
Q Consensus 132 qL~LA~el~lPViIH~r~a----~~d~l~iLk~~~~~~~~~~v~H~FsG~ 177 (487)
.+++|++.+.||+||+-+. .+++.+++++.+.+. .++|.|.-++.
T Consensus 150 a~elA~dvdc~vqLHtes~~~~~~~~i~~~ak~~G~~~-~~VVkHha~p~ 198 (285)
T COG1831 150 AMELAKDVDCAVQLHTESLDEETYEEIAEMAKEAGIKP-YRVVKHHAPPL 198 (285)
T ss_pred HHHHhhcCCCcEEEecCCCChHHHHHHHHHHHHhCCCc-ceeEeecCCcc
Confidence 9999999999999999886 446777888887643 47788865554
No 13
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=99.64 E-value=1.7e-14 Score=153.16 Aligned_cols=154 Identities=16% Similarity=0.201 Sum_probs=110.5
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEEC------CCHHhHHHHHHHHhcCC-CeEEEeecC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTG------TNVEDSISSLKLAQSDE-RLYSTVGCH 75 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~------~~~~~~~~~~~la~~~~-~v~~avGiH 75 (487)
+||+|+|+.+..+ +.++..+.+...|++.++..+ .+++.++..++.++++| ++|.++
T Consensus 11 ~ID~H~Hi~~~~~-------------~~~~~~~~a~~~GvTtvv~~p~~~~~v~g~~~~~~~~~~a~~~p~~~~~~~--- 74 (422)
T cd01295 11 FIDAHLHIESSML-------------TPSEFAKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDAKKTPLDIFWML--- 74 (422)
T ss_pred EEEccCCcCCCCC-------------ChHHHHHHHHCCCcEEEEeCCCCCCcCCCHHHHHHHHHHHhCCCceEEEeC---
Confidence 8999999998643 456677888899999998864 67889999999888887 476666
Q ss_pred CCCCCCcC---CCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCch-
Q psy4448 76 PTRCSEFE---NDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAK- 151 (487)
Q Consensus 76 P~~~~~~~---~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~- 151 (487)
|..+.... ....-..++++++++. ++++++||+ +||+.+. . ..+.|.+++++|+++++||.+|++.+.
T Consensus 75 p~~vp~t~~e~~g~~~~~~~i~~l~~~--~~vvglgE~-md~~~v~----~-~~~~l~~~i~~A~~~g~~v~~Ha~g~~~ 146 (422)
T cd01295 75 PSCVPATPFETSGAELTAEDIKELLEH--PEVVGLGEV-MDFPGVI----E-GDDEMLAKIQAAKKAGKPVDGHAPGLSG 146 (422)
T ss_pred CCcCCCCCCCCCCCcCCHHHHHHHhcC--CCCcEEEEe-ccCcccc----C-CcHHHHHHHHHHHhCCCEEEEeCCCCCH
Confidence 54433111 0011136778888865 689999999 9986421 1 234788999999999999999999977
Q ss_pred HHHHHHHHHhCCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 152 SDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 152 ~d~l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
+++..+++ .+.. . -| ++++.+++.+.+++
T Consensus 147 ~~L~a~l~-aGi~---~--dH-~~~~~eea~e~l~~ 175 (422)
T cd01295 147 EELNAYMA-AGIS---T--DH-EAMTGEEALEKLRL 175 (422)
T ss_pred HHHHHHHH-cCCC---C--Cc-CCCcHHHHHHHHHC
Confidence 56666665 3221 1 14 77888887776655
No 14
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.44 E-value=1.5e-11 Score=126.58 Aligned_cols=151 Identities=13% Similarity=0.159 Sum_probs=84.5
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC-CHHhHHH---HH-HHHhcCCCeEE--EeecC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT-NVEDSIS---SL-KLAQSDERLYS--TVGCH 75 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~-~~~~~~~---~~-~la~~~~~v~~--avGiH 75 (487)
+||+|+|+..+-+. . ..+ .-+.|...||+.++.++. .+..... .+ +.++ .++++ -++.|
T Consensus 36 ~iD~H~H~~~~g~~--------~-~~~---~~~~a~~~GvTtvvd~~~~~~~~~~~~~~~~~~~~~--~~v~a~~~~~~~ 101 (338)
T cd01307 36 WIDLHVHVYQGGTR--------Y-GDR---PDMIGVKSGVTTVVDAGSAGADNIDGFRYTVIERSA--TRVYAFLNISRV 101 (338)
T ss_pred eEEeeecCCCCCcc--------c-CCC---HhHHHHcCceeEEEeCCCCCCCCHHHHHHHHHHhhh--ceEEEEEeeecc
Confidence 89999999865320 0 112 223456789998886543 2222222 22 2222 22222 22222
Q ss_pred ----CCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCch
Q psy4448 76 ----PTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAK 151 (487)
Q Consensus 76 ----P~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~ 151 (487)
|.+..+. .....+.+.+++.+....++++ .+|+=... ..+....-++.++++|+++++|+++|++++.
T Consensus 102 g~~~~~~~~~~---~~~~~~~l~~~~~e~~~gi~gi-k~~~~~~~----~~~~~~~~l~~~~~~a~~~~~pi~vH~~~~~ 173 (338)
T cd01307 102 GLVAQDELPDP---DNIDEDAVVAAAREYPDVIVGL-KARASKSV----VGEWGIKPLELAKKIAKEADLPLMVHIGSPP 173 (338)
T ss_pred ccccccccCCh---hHCCHHHHHHHHHHCcCcEEEE-EEEeeccc----ccccCCcHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 2222221 1223566777776654455443 33321100 0011222278999999999999999999998
Q ss_pred HHHHHHHHHhCCCCCCcEEEEecCCCH
Q psy4448 152 SDFIEIMKEYAPKLPRKGVIHSFDGTP 178 (487)
Q Consensus 152 ~d~l~iLk~~~~~~~~~~v~H~FsG~~ 178 (487)
.++.++++-... ...++|||+|+.
T Consensus 174 ~~~~~~~~~l~~---g~~~~H~~~g~~ 197 (338)
T cd01307 174 PILDEVVPLLRR---GDVLTHCFNGKP 197 (338)
T ss_pred CCHHHHHHHhcC---CCEEEeccCCCC
Confidence 888888865543 258999999975
No 15
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=99.39 E-value=3.2e-13 Score=133.73 Aligned_cols=71 Identities=30% Similarity=0.436 Sum_probs=62.0
Q ss_pred ccCCccccCCCChh----hhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHHhCCCCCCCcEEEEeeCCccccc
Q psy4448 234 QWKPDKMVKSRNEP----ANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAV 306 (487)
Q Consensus 234 ~~~~~~~~~~~n~P----~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~~~~~~ 306 (487)
.+||.|+++.++.+ .|+++|++||+||++++|||+||+|+|++|+++||++... +..||+|||||+.++|.
T Consensus 91 aIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~iL~~~~~--~~~gi~HcFsGs~e~a~ 165 (256)
T COG0084 91 AIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAHEDTLEILKEEGA--PVGGVLHCFSGSAEEAR 165 (256)
T ss_pred EEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccccHHHHHHHHHhcCC--CCCEEEEccCCCHHHHH
Confidence 37888888876444 5999999999999999999999999999999999999865 46799999999866554
No 16
>KOG3020|consensus
Probab=99.31 E-value=1.6e-12 Score=130.09 Aligned_cols=92 Identities=36% Similarity=0.508 Sum_probs=74.2
Q ss_pred ccCCccccCCC----ChhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHHhCCCCCCCcEEEEeeCCcccccccc
Q psy4448 234 QWKPDKMVKSR----NEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSL 309 (487)
Q Consensus 234 ~~~~~~~~~~~----n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~~~~~~~~~ 309 (487)
.+||.++++.| +...|+.+|++||+||.+++||++||||+|++|+++||++..+....+++.|||+|+.+++...+
T Consensus 114 AiGEcGLD~~r~~~~~~~~Qk~vFekQl~LA~~~~~Pl~iH~r~a~~d~~eIl~~~~~~~~~~vvvHsFtGs~e~~~~~l 193 (296)
T KOG3020|consen 114 AIGECGLDYDRLQFSDKEEQKTVFEKQLDLAKRLKLPLFIHCRSAHEDLLEILKRFLPECHKKVVVHSFTGSAEEAQKLL 193 (296)
T ss_pred EeeccccccchhccCChHHHHHHHHHHHHHHHHccCCeeeechhhhHHHHHHHHHhccccCCceEEEeccCCHHHHHHHH
Confidence 47888888877 58999999999999999999999999999999999999999988877899999999865443333
Q ss_pred cchhhHHHhhhCCCCceEeccC
Q psy4448 310 KTKENLETVKSIPEDRLLLETD 331 (487)
Q Consensus 310 k~~~~~e~v~~iPldrlLlETD 331 (487)
+. -..|+..--++=|+
T Consensus 194 k~------~~yig~~g~~~k~~ 209 (296)
T KOG3020|consen 194 KL------GLYIGFTGCSLKTE 209 (296)
T ss_pred Hc------cEEecccceeeech
Confidence 21 13455555555555
No 17
>PRK10425 DNase TatD; Provisional
Probab=99.26 E-value=6.8e-12 Score=124.93 Aligned_cols=70 Identities=26% Similarity=0.473 Sum_probs=59.5
Q ss_pred cCCccccCCC---ChhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHHhCCCCCCCcEEEEeeCCcccc
Q psy4448 235 WKPDKMVKSR---NEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQA 305 (487)
Q Consensus 235 ~~~~~~~~~~---n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~~~~~ 305 (487)
+||.|+++.+ +...|+++|++||+||+++++||+||+|+|++++++||+++.++. ..|++|||+|+.+++
T Consensus 89 IGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~a~~~~l~iL~~~~~~~-~~~i~H~fsG~~~~~ 161 (258)
T PRK10425 89 IGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCRDAHERFMALLEPWLDKL-PGAVLHCFTGTREEM 161 (258)
T ss_pred EeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHhccCC-CCeEEEecCCCHHHH
Confidence 6788888765 456799999999999999999999999999999999999864332 369999999975544
No 18
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=99.19 E-value=1.4e-11 Score=122.58 Aligned_cols=69 Identities=26% Similarity=0.322 Sum_probs=58.3
Q ss_pred cCCccccCCC---ChhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHHhCCCCCCCcEEEEeeCCcccc
Q psy4448 235 WKPDKMVKSR---NEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQA 305 (487)
Q Consensus 235 ~~~~~~~~~~---n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~~~~~ 305 (487)
+||.|+++.+ +...|+++|++||+||+++++||+||||+|+++++++|+++.. +..||+|||||+.+++
T Consensus 95 IGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~~~~~~il~~~~~--~~~~i~H~fsG~~~~a 166 (258)
T PRK11449 95 VGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDL--PRTGVVHGFSGSLQQA 166 (258)
T ss_pred EEecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecCccHHHHHHHHhcCC--CCCeEEEcCCCCHHHH
Confidence 5777777654 3357999999999999999999999999999999999998753 2368999999975544
No 19
>PRK09237 dihydroorotase; Provisional
Probab=99.17 E-value=4.3e-09 Score=110.11 Aligned_cols=157 Identities=14% Similarity=0.189 Sum_probs=86.2
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC-CHHhHHHHHHHHhcC---C-CeEEEeecCCC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT-NVEDSISSLKLAQSD---E-RLYSTVGCHPT 77 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~-~~~~~~~~~~la~~~---~-~v~~avGiHP~ 77 (487)
+||+|+|+... .. .. .... -..+...|++.++..+. .+...+...+..++- + ..|..++.|-.
T Consensus 55 ~iD~H~H~~~~-~~--~~------~~~~---~~~~~~~G~Ttv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~ 122 (380)
T PRK09237 55 WIDLHVHVYPG-ST--PY------GDEP---DEVGVRSGVTTVVDAGSAGADNFDDFRKLTIEASKTRVLAFLNISRIGL 122 (380)
T ss_pred EEEeeecCCCC-CC--cc------CCCH---HHHHHhCCcCEEEECCCCCCCCHHHHHHHHHhhhCcEEEEEEeeecccc
Confidence 89999999842 10 00 1122 24567889998887654 344444444433321 1 12333332211
Q ss_pred CCC-CcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchHHHHH
Q psy4448 78 RCS-EFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIE 156 (487)
Q Consensus 78 ~~~-~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l~ 156 (487)
... ......+-..+.+++++.++...+++++|. +++.-...... ...+....+|++.++||.+|++++..+..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~glk~~-~~~~v~~~~~~----~~~~~~~~~a~~~g~~v~~H~~~~~~~~~~ 197 (380)
T PRK09237 123 LAQDELADLEDIDADAVAEAVKRNPDFIVGIKAR-MSSSVVGDNGI----EPLELAKAIAAEANLPLMVHIGNPPPSLEE 197 (380)
T ss_pred cccchhcCHhHCCHHHHHHHHHhCcCcEEEEEEE-EecccccccCC----chHHHHHHHHHhcCCCEEEEcCCCCCCHHH
Confidence 111 111001124567888887543458898864 55421111001 234566666779999999999887655555
Q ss_pred HHHHhCCCCCCcEEEEecCCCHH
Q psy4448 157 IMKEYAPKLPRKGVIHSFDGTPF 179 (487)
Q Consensus 157 iLk~~~~~~~~~~v~H~FsG~~~ 179 (487)
+++-... ..++.|||+|+.+
T Consensus 198 l~~~l~~---g~~~~H~~~~~~~ 217 (380)
T PRK09237 198 ILELLRP---GDILTHCFNGKPN 217 (380)
T ss_pred HHhhccC---CCEEEecCCCCCC
Confidence 5443332 2579999999863
No 20
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=99.12 E-value=1e-09 Score=106.51 Aligned_cols=174 Identities=14% Similarity=0.093 Sum_probs=102.2
Q ss_pred EEEecccCCCcccccccccC---------CCCCCCCHHHHHHHHHhcCCCEEEEECCCH------HhHHHHHHHHhcCC-
Q psy4448 3 YIDIGANLKDAMYEGFYSSK---------NQKHEPDIDHVLNRAWNAGLEKIIVTGTNV------EDSISSLKLAQSDE- 66 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~---------~~~~~~d~~~vl~ra~~~GV~~ii~v~~~~------~~~~~~~~la~~~~- 66 (487)
+||+|+|+....+.+.+... ......+....+.++...||+.++..+... +.++.+.+.++..+
T Consensus 1 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAG 80 (275)
T ss_pred CcccchhhHHHHHccCCCccccccccccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcC
Confidence 58999999875443211000 000012356677889999999988765432 46677788877774
Q ss_pred -CeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcC-CCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEE
Q psy4448 67 -RLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGG-KKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLF 144 (487)
Q Consensus 67 -~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~-~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPVi 144 (487)
.++.+.|+|+...... +...+.+.+++.... ..+++|+..+... ....+.+.|++++++|+++++||.
T Consensus 81 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~gi~~~~~~~------~~~~~~~~~~~~~~~a~~~~~~i~ 150 (275)
T cd01292 81 IRVVLGLGIPGVPAAVD----EDAEALLLELLRRGLELGAVGLKLAGPYT------ATGLSDESLRRVLEEARKLGLPVV 150 (275)
T ss_pred eeeEEeccCCCCccccc----hhHHHHHHHHHHHHHhcCCeeEeeCCCCC------CCCCCcHHHHHHHHHHHHcCCeEE
Confidence 4667778887543210 122223333333210 1234444332221 111467899999999999999999
Q ss_pred EEecCchH---HHHHHHHHhCCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 145 LHCRNAKS---DFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 145 IH~r~a~~---d~l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
+|+..... .+.++++...... .-.+.||+..+.+.++.+.+.
T Consensus 151 ~H~~~~~~~~~~~~~~~~~~~~~~-~~~~~H~~~~~~~~~~~~~~~ 195 (275)
T cd01292 151 IHAGELPDPTRALEDLVALLRLGG-RVVIGHVSHLDPELLELLKEA 195 (275)
T ss_pred EeeCCcccCccCHHHHHHHHhcCC-CEEEECCccCCHHHHHHHHHc
Confidence 99987653 2444444332111 246779998877777766654
No 21
>PRK10812 putative DNAse; Provisional
Probab=99.10 E-value=1.2e-10 Score=116.53 Aligned_cols=69 Identities=19% Similarity=0.304 Sum_probs=58.7
Q ss_pred cCCccccCC---CChhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHHhCCCCCCCcEEEEeeCCccc
Q psy4448 235 WKPDKMVKS---RNEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQ 304 (487)
Q Consensus 235 ~~~~~~~~~---~n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~~~~ 304 (487)
+||.++++. .+.+.|+++|++||++|+++++||+||+|+|++++++||+++... +.+|++|||+|+.++
T Consensus 92 IGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~a~~~~l~iL~~~~~~-~~~~v~H~fsG~~~~ 163 (265)
T PRK10812 92 MGETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTRDARADTLAILREEKVT-DCGGVLHCFTEDRET 163 (265)
T ss_pred EEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCchHHHHHHHHhhcCC-CCCEEEEeecCCHHH
Confidence 677788765 357899999999999999999999999999999999999986433 236899999997443
No 22
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=99.05 E-value=6.3e-11 Score=117.59 Aligned_cols=69 Identities=29% Similarity=0.555 Sum_probs=56.1
Q ss_pred cCCccccCC----CChhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHHhCCCCCCCcEEEEeeCCccc
Q psy4448 235 WKPDKMVKS----RNEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQ 304 (487)
Q Consensus 235 ~~~~~~~~~----~n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~~~~ 304 (487)
+||.|+++. .+...|+++|++||+||++++|||+||||+|+++++++|+++..+ ...+++|||||+.++
T Consensus 91 IGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a~~~~l~il~~~~~~-~~~~i~H~f~g~~~~ 163 (255)
T PF01026_consen 91 IGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRKAHEELLEILKEYGPP-NLRVIFHCFSGSPEE 163 (255)
T ss_dssp EEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEESHHHHHHHHHHHTTGG-TSEEEETT--S-HHH
T ss_pred eeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCCcHHHHHHHHHhcccc-ceeEEEecCCCCHHH
Confidence 567777663 257899999999999999999999999999999999999998732 237999999997543
No 23
>PRK09875 putative hydrolase; Provisional
Probab=99.04 E-value=4.4e-08 Score=99.24 Aligned_cols=154 Identities=10% Similarity=0.105 Sum_probs=94.1
Q ss_pred CHHHHH---HHHHhcCCCEEEEECCC--HHhHHHHHHHHhcCC-CeEEEeecCC-----CCCCCcCCC--chhhHHHHHH
Q psy4448 29 DIDHVL---NRAWNAGLEKIIVTGTN--VEDSISSLKLAQSDE-RLYSTVGCHP-----TRCSEFEND--PEGYLQSLDK 95 (487)
Q Consensus 29 d~~~vl---~ra~~~GV~~ii~v~~~--~~~~~~~~~la~~~~-~v~~avGiHP-----~~~~~~~~~--~~~~l~~L~~ 95 (487)
+.+.++ .+++++|+..+|-++.. -.+-+.+.+++++-+ +|.++-|+|- .+......+ .+..++++.+
T Consensus 32 ~~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv~~TG~y~~~~~p~~~~~~~~e~la~~~i~ei~~ 111 (292)
T PRK09875 32 QYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQDAFFPEHVATRSVQELAQEMVDEIEQ 111 (292)
T ss_pred cHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEEEcCcCCCCccCCHHHhcCCHHHHHHHHHHHHHH
Confidence 455554 45678999988876431 133344555555543 7899999763 222211100 0112233344
Q ss_pred HHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC--chHHHHHHHHHhCCCCCCcEEE-E
Q psy4448 96 IIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN--AKSDFIEIMKEYAPKLPRKGVI-H 172 (487)
Q Consensus 96 ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~--a~~d~l~iLk~~~~~~~~~~v~-H 172 (487)
-+....-+.-.|||||.++.. ..+..+++|+++.+.+++.+.||++|+.. ..-+.+++|++.+... .++++ |
T Consensus 112 Gi~gt~ikaGvIGeiG~~~~~----it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~~~g~e~l~il~e~Gvd~-~rvvi~H 186 (292)
T PRK09875 112 GIDGTELKAGIIAEIGSSEGK----ITPLEEKVFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDL-SRVTVGH 186 (292)
T ss_pred hhccCCCcccEEEEEecCCCC----CCHHHHHHHHHHHHHHHHHCCcEEEcCCCccchHHHHHHHHHcCcCc-ceEEEeC
Confidence 443211244569999999743 23788999999999999999999999754 3446789999887643 35554 6
Q ss_pred e-cCCCHHHHHHHHcC
Q psy4448 173 S-FDGTPFQAVDSLKT 187 (487)
Q Consensus 173 ~-FsG~~~~a~~~l~~ 187 (487)
+ .+.+.+..+++++.
T Consensus 187 ~d~~~d~~~~~~l~~~ 202 (292)
T PRK09875 187 CDLKDNLDNILKMIDL 202 (292)
T ss_pred CCCCCCHHHHHHHHHc
Confidence 5 23455555555544
No 24
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=98.90 E-value=4.3e-08 Score=96.23 Aligned_cols=143 Identities=14% Similarity=0.187 Sum_probs=87.6
Q ss_pred EEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC-----------C---------HHhHHHHHHHHh
Q psy4448 4 IDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT-----------N---------VEDSISSLKLAQ 63 (487)
Q Consensus 4 iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~-----------~---------~~~~~~~~~la~ 63 (487)
||+|+|+.. .......+..+...++........ . .....++++.+.
T Consensus 1 ID~H~H~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~ 66 (273)
T PF04909_consen 1 IDAHIHLPG--------------EWDPEERLPEMDKQGVDRQLASPEDLLVDMDVAGVDGADEVQASARGFNDWLVELAA 66 (273)
T ss_dssp EEEEEEEGG--------------GTCHHHHHHHHHHHTEEEEEEEHEEEEHCHHHGGHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcccCCC--------------CcCchhhhhHHHhcCCchhhcCHHHHHhhHhHhccchHHHHhhHHHHHHHHHHHHHH
Confidence 899999821 235566667777778765532211 0 122334455555
Q ss_pred cCC-CeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCC
Q psy4448 64 SDE-RLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLP 142 (487)
Q Consensus 64 ~~~-~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lP 142 (487)
+++ .+...+++.|... ++..+++++.+.+ ..+++|. +........ ....... ...+++|.++|+|
T Consensus 67 ~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~--~g~~Gv~-l~~~~~~~~-~~~~~~~---~~~~~~~~~~~~p 132 (273)
T PF04909_consen 67 KHPDRFIGFAAIPPPDP-------EDAVEELERALQE--LGFRGVK-LHPDLGGFD-PDDPRLD---DPIFEAAEELGLP 132 (273)
T ss_dssp HSTTTEEEEEEETTTSH-------HHHHHHHHHHHHT--TTESEEE-EESSETTCC-TTSGHCH---HHHHHHHHHHT-E
T ss_pred HcCCCEEEEEEecCCCc-------hhHHHHHHHhccc--cceeeeE-ecCCCCccc-cccHHHH---HHHHHHHHhhccc
Confidence 554 6788888888653 3567888888866 5788886 555443211 1111111 6889999999999
Q ss_pred EEEEec-----------CchHHHHHHHHHhCCCCCCcEEEEecCCC
Q psy4448 143 LFLHCR-----------NAKSDFIEIMKEYAPKLPRKGVIHSFDGT 177 (487)
Q Consensus 143 ViIH~r-----------~a~~d~l~iLk~~~~~~~~~~v~H~FsG~ 177 (487)
|.+|+- -....+.+++.+++. .++|+-+++++
T Consensus 133 v~~H~g~~~~~~~~~~~~~~~~~~~~~~~~P~---l~ii~~H~G~~ 175 (273)
T PF04909_consen 133 VLIHTGMTGFPDAPSDPADPEELEELLERFPD---LRIILAHLGGP 175 (273)
T ss_dssp EEEEESHTHHHHHHHHHHHHHHHTTHHHHSTT---SEEEESGGGTT
T ss_pred eeeeccccchhhhhHHHHHHHHHHHHHHHhcC---CeEEEecCccc
Confidence 999964 123345667777754 47777666666
No 25
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=98.69 E-value=4.8e-06 Score=82.98 Aligned_cols=149 Identities=13% Similarity=0.184 Sum_probs=96.6
Q ss_pred EEEecccCCCcccccccccC--CCCCCCCHHHHHHHHHhcCCCEEEEECCC--HHhHHHHHHHHhcCCCeEEEeecCCCC
Q psy4448 3 YIDIGANLKDAMYEGFYSSK--NQKHEPDIDHVLNRAWNAGLEKIIVTGTN--VEDSISSLKLAQSDERLYSTVGCHPTR 78 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~--~~~~~~d~~~vl~ra~~~GV~~ii~v~~~--~~~~~~~~~la~~~~~v~~avGiHP~~ 78 (487)
.||+|+|+-+..+ ..+.++ .....-.++++++.+..+||++.|++..+ ..+...+++.++.++.+...++++|..
T Consensus 2 ~iD~H~H~~~~~~-~~~~~~~~~~~~~~~~e~l~~~m~~~gV~~aV~vq~~~~~~~n~~~~~~~~~~~r~~g~~~~~p~~ 80 (263)
T cd01311 2 AVDAHMHVFDPGY-PFPPAPEKFTPYDPGIDDLRALRSTLGIDRVVIVQASIYGADNSNLLDALASNGKARGGATVDPRT 80 (263)
T ss_pred CEEeeeeeeCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHhCCCcEEEeCccccCCchHHHHHHHhhCCCeEEEEEECCCC
Confidence 6999999987554 111110 11234678999999999999999987643 223344555555566788888888853
Q ss_pred CCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc-hHHHHHH
Q psy4448 79 CSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA-KSDFIEI 157 (487)
Q Consensus 79 ~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a-~~d~l~i 157 (487)
. . .+.|+++ .+ +.+.+|. +-+.+. ... ....+...++.+.++|+||.+|+... ..++.++
T Consensus 81 ~------~---~~~l~~~-~~--~g~rGvR-l~~~~~--~~~----~~~~~~~~~~~~~~~gl~v~~~~~~~~l~~l~~l 141 (263)
T cd01311 81 T------T---DAELKEM-HD--AGVRGVR-FNFLFG--GVD----NKDELDEIAKRAAELGWHVQVYFDAVDLPALLPF 141 (263)
T ss_pred C------C---HHHHHHH-HH--CCCeEEE-EecccC--CCC----CHHHHHHHHHHHHHcCCEEEEEeCHhhHHHHHHH
Confidence 2 1 2456665 33 4688884 222221 111 33557788999999999999999653 3567778
Q ss_pred HHHhCCCCCCcEEEEecC
Q psy4448 158 MKEYAPKLPRKGVIHSFD 175 (487)
Q Consensus 158 Lk~~~~~~~~~~v~H~Fs 175 (487)
++++ . .++|+-+++
T Consensus 142 ~~~~-~---l~ivldH~G 155 (263)
T cd01311 142 LQKL-P---VAVVIDHFG 155 (263)
T ss_pred HHHC-C---CCEEEECCC
Confidence 8888 3 367775554
No 26
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=97.98 E-value=1.3e-05 Score=78.24 Aligned_cols=55 Identities=42% Similarity=0.827 Sum_probs=49.1
Q ss_pred ChhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHHhCCCCCCCcEEEEeeCC
Q psy4448 245 NEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGT 301 (487)
Q Consensus 245 n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~ 301 (487)
+.+.|.++|+.|+++|+++++||+|||+++..+++++++++.+ ....++|+|+|+
T Consensus 102 ~~~~q~~~~~~~~~~a~e~~~pv~iH~~~~~~~~~~l~~~~~~--~~~~i~H~~~~~ 156 (251)
T cd01310 102 PREVQKEVFRAQLELAKELNLPVVIHSRDAHEDVLEILKEYGP--PKRGVFHCFSGS 156 (251)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEeeCchHHHHHHHHhcCC--CCCEEEEccCCC
Confidence 4679999999999999999999999999999999999999851 246789999984
No 27
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=97.94 E-value=0.0026 Score=64.73 Aligned_cols=115 Identities=13% Similarity=0.151 Sum_probs=71.0
Q ss_pred HHHHHhcCCCEEEEEC-C---CHHhH------HHHHHHHhcCCC-eEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCC
Q psy4448 34 LNRAWNAGLEKIIVTG-T---NVEDS------ISSLKLAQSDER-LYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGK 102 (487)
Q Consensus 34 l~ra~~~GV~~ii~v~-~---~~~~~------~~~~~la~~~~~-v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~ 102 (487)
++.+...|++..+..+ . ...+. +.+.+.++++|+ ....+.+=|... +...+++++.+.+ .
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~-------~~a~~E~er~v~~--~ 125 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDP-------EAAAEELERRVRE--L 125 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCch-------HHHHHHHHHHHHh--c
Confidence 5667788887766652 1 12222 356777777875 566666666432 2346788888876 3
Q ss_pred CEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCch------------HHHHHHHHHhCC
Q psy4448 103 KVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAK------------SDFIEIMKEYAP 163 (487)
Q Consensus 103 ~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~------------~d~l~iLk~~~~ 163 (487)
+++++.--+..-.. +. ..+.+...++.|.++|+||+||+-... -.+-+++++++.
T Consensus 126 gf~g~~l~p~~~~~--~~----~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~~fP~ 192 (293)
T COG2159 126 GFVGVKLHPVAQGF--YP----DDPRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKGHSDPLYLDDVARKFPE 192 (293)
T ss_pred CceEEEecccccCC--CC----CChHHHHHHHHHHHcCCCEEEEeCCCCCCcccccCCCCchHHHHHHHHCCC
Confidence 56666543333221 11 111188999999999999999996521 245666777654
No 28
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=97.94 E-value=1.4e-05 Score=78.16 Aligned_cols=54 Identities=35% Similarity=0.659 Sum_probs=48.1
Q ss_pred hhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHHhCCCCCCCcEEEEeeCC
Q psy4448 246 EPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGT 301 (487)
Q Consensus 246 ~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~ 301 (487)
...|.++|++|+++|+++++||++|++++..+++++++++.+ ...++.|+|+|+
T Consensus 103 ~~~q~~~~~~~~~~a~~~~~pv~iH~~~~~~~~~~~l~~~~~--~~~~i~H~~~~~ 156 (252)
T TIGR00010 103 KRRQEEVFRAQLQLAEELNLPVIIHARDAEEDVLDILREEKP--KVGGVLHCFTGD 156 (252)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEecCccHHHHHHHHhcCC--CCCEEEEccCCC
Confidence 455999999999999999999999999999999999998753 346899999885
No 29
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=97.88 E-value=0.0044 Score=65.06 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=83.9
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCC----HHhHHHHHHHHhcC-CCeEEEeecCCC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTN----VEDSISSLKLAQSD-ERLYSTVGCHPT 77 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~----~~~~~~~~~la~~~-~~v~~avGiHP~ 77 (487)
+||+|+|+...-+. . ..+.+. .+...|++.++.++.. .+.+...+..+++. .+.+..++.+.-
T Consensus 58 liD~H~H~~~~g~~----~-----~~~~~~---~~l~~G~Ttv~d~g~~~~~~~~~~~~~~~a~~~~gira~l~~~~~~~ 125 (379)
T PRK12394 58 LIDYHAHVFYDGTE----G-----GVRPDM---YMPPNGVTTVVDAGSAGTANFDAFYRTVICASKVRIKAFLTVSPPGQ 125 (379)
T ss_pred EEEeeecCCCCCcc----c-----ccCHHH---HHHhCCccEEEECCCCCcccHHHHHHHHhhhhcceeeeEEeeecccc
Confidence 89999999643210 0 112222 2567899999887653 22333332223333 245555555521
Q ss_pred CC---CCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchHHH
Q psy4448 78 RC---SEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDF 154 (487)
Q Consensus 78 ~~---~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~ 154 (487)
.. .+.........+++++++....+.+.+++ +.+.. .... ..-.+.|++.+++|+++++|+.+|+.++..+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k---i~~~~-~~~~-~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~~ 200 (379)
T PRK12394 126 TWSGYQENYDPDNIDENKIHALFRQYRNVLQGLK---LRVQT-EDIA-EYGLKPLTETLRIANDLRCPVAVHSTHPVLPM 200 (379)
T ss_pred cccCcccccChhHCCHHHHHHHHHHCcCcEEEEE---EEEec-cccc-ccchHHHHHHHHHHHHcCCCEEEEeCCCCccH
Confidence 11 00000001113566777665334444432 22211 1000 12367899999999999999999998876566
Q ss_pred HHHHHHhCCCCCCcEEEEecCCC
Q psy4448 155 IEIMKEYAPKLPRKGVIHSFDGT 177 (487)
Q Consensus 155 l~iLk~~~~~~~~~~v~H~FsG~ 177 (487)
.++++-... ...+.|||.++
T Consensus 201 ~~~~~~l~~---g~~~~H~~~~~ 220 (379)
T PRK12394 201 KELVSLLRR---GDIIAHAFHGK 220 (379)
T ss_pred HHHHHhcCC---CCEEEecCCCC
Confidence 555543332 24789998865
No 30
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=97.86 E-value=1.3e-05 Score=80.73 Aligned_cols=63 Identities=11% Similarity=0.056 Sum_probs=50.2
Q ss_pred CccccCCCChhhhHHHHHHHHHHhhhCCCCEEEEecc---chHHHHHHHHHhCCCCCCCcEEEEe-eC
Q psy4448 237 PDKMVKSRNEPANIVYFRKQLDLSVTHKLPLFLHCRN---AKSDFIEIMKEYAPKLPRKGVIHSF-DG 300 (487)
Q Consensus 237 ~~~~~~~~n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~---a~~~~l~il~~~~~~~~~~gv~hsf-sG 300 (487)
+.+++. ...+.|+++|++|+++|+++|+||+||+|+ +..+++++|++..-.....++.|+| +|
T Consensus 123 Eigld~-~~~~~q~~~f~~~~~lA~~~~~Pv~iH~~~~~~~~~~~l~~l~~~g~~~~~~vi~H~~~~~ 189 (293)
T cd00530 123 EAGGSP-AITPLEEKVLRAAARAQKETGVPISTHTQAGLTMGLEQLRILEEEGVDPSKVVIGHLDRND 189 (293)
T ss_pred EeecCC-CCCHHHHHHHHHHHHHHHHHCCeEEEcCCCCccccHHHHHHHHHcCCChhheEEeCCCCCC
Confidence 444433 256899999999999999999999999997 8999999999864322234788999 56
No 31
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=97.85 E-value=0.00033 Score=71.67 Aligned_cols=146 Identities=15% Similarity=0.116 Sum_probs=85.4
Q ss_pred HHHHHhcCCCEEEEECCC--HHhHHHHHHHHhcCC-CeEEEeecCCCCC-CCcCCCchhhHHHHHHHHHh--------cC
Q psy4448 34 LNRAWNAGLEKIIVTGTN--VEDSISSLKLAQSDE-RLYSTVGCHPTRC-SEFENDPEGYLQSLDKIIKE--------GG 101 (487)
Q Consensus 34 l~ra~~~GV~~ii~v~~~--~~~~~~~~~la~~~~-~v~~avGiHP~~~-~~~~~~~~~~l~~L~~ll~~--------~~ 101 (487)
+++++++|+..+|-++.. -.+.+.+.+++++-+ +|.++-|+|...- +.+. .....++|.+++.. ..
T Consensus 44 l~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~II~~TG~y~~~~~p~~~--~~~s~e~la~~~i~Ei~~GidgT~ 121 (308)
T PF02126_consen 44 LKEFKAAGGRTIVDATPIGLGRDVEALREISRRTGVNIIASTGFYKEPFYPEWV--REASVEELADLFIREIEEGIDGTG 121 (308)
T ss_dssp HHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHHHT-EEEEEEEE-SGGCSCHHH--HTSHHHHHHHHHHHHHHT-STTSS
T ss_pred HHHHHHcCCCEEEecCCcccCcCHHHHHHHHHHhCCeEEEeCCCCccccCChhh--hcCCHHHHHHHHHHHHHhcCCCCc
Confidence 456778999988876541 134455666666654 7999999986221 1110 01123444443322 11
Q ss_pred CCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCch---HHHHHHHHHhCCCCCCcEEE-EecC-C
Q psy4448 102 KKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAK---SDFIEIMKEYAPKLPRKGVI-HSFD-G 176 (487)
Q Consensus 102 ~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~---~d~l~iLk~~~~~~~~~~v~-H~Fs-G 176 (487)
-+.=.|||+|=. . .-.+.++++|++....+++.+.||++|+-... -+.+++|++.+... .+++| |.-. .
T Consensus 122 ikaG~Ik~~~~~-~----~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~~~~~e~~~il~e~Gv~~-~rvvigH~D~~~ 195 (308)
T PF02126_consen 122 IKAGIIKEIGSS-N----PITPLEEKVLRAAARAHKETGAPISTHTGRGTRMGLEQLDILEEEGVDP-SRVVIGHMDRNP 195 (308)
T ss_dssp B-ESEEEEEEBT-T----BCEHHHHHHHHHHHHHHHHHT-EEEEEESTTGTCHHHHHHHHHHTT--G-GGEEETSGGGST
T ss_pred cchhheeEeecc-C----CCCHHHHHHHHHHHHHHHHhCCeEEEcCCCCCcCHHHHHHHHHHcCCCh-hHeEEeCCCCCC
Confidence 133467776654 2 23488999999999999999999999997665 58999999988654 46666 5432 2
Q ss_pred CHHHHHHHHcC
Q psy4448 177 TPFQAVDSLKT 187 (487)
Q Consensus 177 ~~~~a~~~l~~ 187 (487)
+.+..+++++.
T Consensus 196 D~~y~~~la~~ 206 (308)
T PF02126_consen 196 DLDYHRELADR 206 (308)
T ss_dssp -HHHHHHHHHT
T ss_pred CHHHHHHHHhc
Confidence 33344444443
No 32
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=97.81 E-value=0.0038 Score=65.41 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=29.3
Q ss_pred ccHHHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCCCC
Q psy4448 372 ANIVQILEIVAAVRGVEREKLGPIIHQNTLRLFFPHE 408 (487)
Q Consensus 372 ~~l~~v~~~iA~ikg~~~~~va~~~~~N~~rlf~~~~ 408 (487)
.++...+.......|++.+++.+..+.|..++|++..
T Consensus 308 ~~l~~~~~~~~~~~gis~~~~l~~aT~npA~~lg~~~ 344 (388)
T PRK10657 308 ESLLEEVRELVKDEGLPLEDALKPLTSNVARFLKLNG 344 (388)
T ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 3455555555556799999999999999999999864
No 33
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=97.80 E-value=0.0035 Score=64.65 Aligned_cols=121 Identities=14% Similarity=0.083 Sum_probs=73.0
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC------CHHhH-HHHHHHHhcC--CCeEEEee
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT------NVEDS-ISSLKLAQSD--ERLYSTVG 73 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~------~~~~~-~~~~~la~~~--~~v~~avG 73 (487)
+||.|+|+..+ +++....+.|.+.| +.++.+.. +.+.. ....++++++ ..+...+|
T Consensus 6 ~iD~h~h~~~~--------------~~~~~~~~aa~~gG-Ttvv~mpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (335)
T cd01294 6 PDDMHLHLRDG--------------AMLKLVLPYTARGF-SRAIVMPNLKPPVTTTADALAYRERILAADPGPNFTPLMT 70 (335)
T ss_pred cceeEecCCCc--------------hHHHHHHHHHHhCC-CEEEECCCCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 79999999862 35667778888999 98887643 22322 2334455555 35777788
Q ss_pred cCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHH-HHHHHHHHHHhhhCCCCEEEEecCc
Q psy4448 74 CHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQ-LKYFRKQLDLSVTHKLPLFLHCRNA 150 (487)
Q Consensus 74 iHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q-~~vF~~qL~LA~el~lPViIH~r~a 150 (487)
+||... ...++|++++.. ..+.++ -+-..+.. .......+ ...+...++.|.++|+||++|+.+.
T Consensus 71 i~~~~~--------~~~~el~~~~~~--~G~~g~-Klf~~~~~-~~~~~~~~d~~~l~~~~e~~~~~g~~V~vHaE~~ 136 (335)
T cd01294 71 LYLTEN--------TTPEELREAKKK--GGIRGV-KLYPAGAT-TNSQGGVTDLEKIYPVLEAMQKLGMPLLVHGEVP 136 (335)
T ss_pred EeccCC--------CCHHHHHHHHHh--CCceEE-EEecCCCc-cCCCCCcCCHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 887522 124567776643 234555 23211100 00000011 2578888899999999999999764
No 34
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=97.79 E-value=0.0033 Score=66.51 Aligned_cols=151 Identities=14% Similarity=0.167 Sum_probs=83.5
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC------CHHhHH-HHHHHHhcCCCeEEEeecC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT------NVEDSI-SSLKLAQSDERLYSTVGCH 75 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~------~~~~~~-~~~~la~~~~~v~~avGiH 75 (487)
+||+|+|+...--. .+ ......+..+.++-.+|++.++-++. .+++.. .+..+....-..+...|..
T Consensus 58 lID~HvH~~~gg~~---~~---~~~~~~e~~~~e~l~~GvTTv~d~~g~~~~~~~~~~~~a~~~al~~~Gir~~~~~g~~ 131 (389)
T TIGR01975 58 FIDQHVHIIGGGGE---GG---PTTRTPELTLSDITKGGVTTVVGLLGTDGITRHMESLLAKARALEEEGISCYMLTGAY 131 (389)
T ss_pred Eeehhhcccccccc---CC---CccCCHHHHHHHHHhCCcEEEecCcccCccccChhhHHHHHHHHHHhCCEEEEEcccc
Confidence 89999998742000 00 01123444577888999998875431 222121 2222222211233344432
Q ss_pred CCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCC----CC--EEEEecC
Q psy4448 76 PTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHK----LP--LFLHCRN 149 (487)
Q Consensus 76 P~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~----lP--ViIH~r~ 149 (487)
-.-....+. . ...++.. .+++++||||-+--++... .-.+-+++..+.|+..+ +| |++|.-+
T Consensus 132 ~~p~~t~t~---~---~~~d~~~--~d~iiG~~~ia~sd~r~~~----~~~~~l~~~~~~~~~~g~~~~~~g~~~vH~g~ 199 (389)
T TIGR01975 132 HVPSRTITG---S---VESDLLL--IDKVIGVGEIAISDHRSAQ----PTVEHLTNMAAEARVGGLLGGKPGIVNFHVGD 199 (389)
T ss_pred cCCCccccc---c---hhhheee--ehhhcccceEEEccCcCCC----CCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 111222221 1 1122221 1579999999997665332 23455777777788777 99 9999987
Q ss_pred ch---HHHHHHHHHhCCCCCCcEEEEecCCC
Q psy4448 150 AK---SDFIEIMKEYAPKLPRKGVIHSFDGT 177 (487)
Q Consensus 150 a~---~d~l~iLk~~~~~~~~~~v~H~FsG~ 177 (487)
+. ++++++|++. .+..|||.+.
T Consensus 200 ~~~~l~~l~~~~~~~------di~~~~f~pt 224 (389)
T TIGR01975 200 SKRALQPIYELVENT------DVPITQFLPT 224 (389)
T ss_pred chhhHHHHHHHHHhc------CCChhheecC
Confidence 64 4666666543 3678999886
No 35
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=97.74 E-value=0.016 Score=60.61 Aligned_cols=120 Identities=13% Similarity=0.213 Sum_probs=74.7
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC------CHHhHHHHHHHHhcCC--CeEEEeec
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT------NVEDSISSLKLAQSDE--RLYSTVGC 74 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~------~~~~~~~~~~la~~~~--~v~~avGi 74 (487)
+||.|+|+.++.+ ...+++....+.|...||+.++.+.. +.+.+....+.++..+ .++...|+
T Consensus 16 ~iD~HvH~~~~~~---------~~~e~~~s~s~aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (374)
T cd01317 16 LVDLHVHLREPGF---------EYKETLESGAKAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDVGIVRVLPIGAL 86 (374)
T ss_pred EEeeccccCCCCc---------cccchHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHhccCCceeEEEEEEE
Confidence 8999999987532 12568888889999999999988753 3455555555665544 23444555
Q ss_pred CCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc
Q psy4448 75 HPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA 150 (487)
Q Consensus 75 HP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a 150 (487)
.++.. .+.++.+..+... .+.++..-|. ...+ ...+.+.++.++++|.||++|+.+.
T Consensus 87 ~~~~~-------~~~~~~i~~l~~~---G~~~~k~~~~-----~~~~----~~~l~~~~~~~~~~g~~v~~H~E~~ 143 (374)
T cd01317 87 TKGLK-------GEELTEIGELLEA---GAVGFSDDGK-----PIQD----AELLRRALEYAAMLDLPIIVHPEDP 143 (374)
T ss_pred eeCCC-------cccHHHHHHHHHC---CcEEEEcCCc-----CCCC----HHHHHHHHHHHHhcCCeEEEecCCh
Confidence 54321 1225566666543 4666642111 1011 2346667788999999999999653
No 36
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=97.73 E-value=0.0064 Score=67.17 Aligned_cols=157 Identities=13% Similarity=0.173 Sum_probs=93.0
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEE------CCCHHhHHHHHHHHhcCC-CeEEEeecC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVT------GTNVEDSISSLKLAQSDE-RLYSTVGCH 75 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v------~~~~~~~~~~~~la~~~~-~v~~avGiH 75 (487)
+||+|+|+....+ ..++....+-..|++.++.. ....+..+..++.+++.| +++.++..-
T Consensus 52 ~ID~H~Hi~~~~~-------------~~~~~~~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~~~~~d~~~~~~s~ 118 (552)
T TIGR01178 52 FIDAHIHIESSML-------------TPSEFAKLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAKKTPLNFYFMLPSC 118 (552)
T ss_pred eEecccccCCCCC-------------ChhHHHHHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 8999999986432 22344455567788877742 224666666677666554 344333211
Q ss_pred -CCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchHHH
Q psy4448 76 -PTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDF 154 (487)
Q Consensus 76 -P~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~ 154 (487)
|--.-+. ....-..+++++++++ +.++++||. ++|..+.. ...+++++. +.|++.++++..|+.....+-
T Consensus 119 vp~~~~e~-~g~~~~~~~i~~~~~~--~~V~glke~-m~~~~v~~----~d~~~l~~i-~~a~~~g~~I~gHap~l~~~e 189 (552)
T TIGR01178 119 VPALQFET-SGAVLTAEDIDELMEL--DEVLGLAEV-MDYPGVIN----ADIEMLNKI-NSARKRNKVIDGHCPGLSGKL 189 (552)
T ss_pred CCCCcccC-CCCccCHHHHHHHHcC--CCccEEEEE-ecchhhcC----CCHHHHHHH-HHHHhCCCEEEecCCCCCHHH
Confidence 2110011 0011135678888876 689999998 45522111 123344444 688999999999999877766
Q ss_pred HHHHHHhCCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 155 IEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 155 l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
+..+...+. ..-| ..-+.+++.+-+++
T Consensus 190 L~~~~~aGi-----~~dH-e~~s~~ea~e~~~~ 216 (552)
T TIGR01178 190 LNKYISAGI-----SNDH-ESTSIEEAREKLRL 216 (552)
T ss_pred HHHHHHcCC-----CCCc-CcCCHHHHHHHHHC
Confidence 666654432 2445 45567777777776
No 37
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=97.61 E-value=0.0091 Score=59.88 Aligned_cols=155 Identities=12% Similarity=0.007 Sum_probs=93.6
Q ss_pred CcEEEecccCCCcccccccc---cCCCCCCCCHHHHHHHHHhcCCCEEEEE--CCCHHhHHHHHHHHhcCCCeEEE-eec
Q psy4448 1 MKYIDIGANLKDAMYEGFYS---SKNQKHEPDIDHVLNRAWNAGLEKIIVT--GTNVEDSISSLKLAQSDERLYST-VGC 74 (487)
Q Consensus 1 m~~iD~H~HL~~~~f~~~~~---g~~~~~~~d~~~vl~ra~~~GV~~ii~v--~~~~~~~~~~~~la~~~~~v~~a-vGi 74 (487)
+|+||+|.|+-++....+.. +.+-..+-.+++.++.++..||.+.|.+ ++++.|.+..++..++.++...+ +|+
T Consensus 7 ~~~IDtH~Hl~~~~~~~~pw~~~~~~~~~d~~~~dY~~~~~~~gv~~~V~vq~~~~~~D~~~e~~~v~~~~~~~g~~vg~ 86 (279)
T COG3618 7 QMIIDTHAHLWDPGALPYPWLADYEALRRDYLFEDYLALLKAHGVSGGVLVQVNVDPRDNEKELAFVAELAERHGGIVGV 86 (279)
T ss_pred ccccchhhhhhcccccCCCCCCcccccCCCCCHHHHHHHHHhcCcceeEEEecccCccchHHHHHHHHhhHHhhCceEEE
Confidence 57999999998764222211 1112334578889999999999987766 56777888877777666544333 554
Q ss_pred CCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc-hHH
Q psy4448 75 HPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA-KSD 153 (487)
Q Consensus 75 HP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a-~~d 153 (487)
==... .+..++|++.. . +.+++|= ..... .+....+-..|++-++-..++|+++=++.--. ..+
T Consensus 87 id~~~-------~e~~a~L~~~~-~--~~~~GvR--~~l~~---~p~~~~~a~~~r~~~~rL~~~gl~fdl~~~~~ql~~ 151 (279)
T COG3618 87 IDECR-------PEFAAKLERAR-Y--PFFRGVR--RNLHV---VPDGLFEAPAWRANVERLAKLGLHFDLQVDPHQLPD 151 (279)
T ss_pred EecCC-------chHHHHHHHhc-c--cccceee--ehhhc---CCccchhhHHHHHHHHHHHhcCCeEEEEeChhhhHH
Confidence 22111 12445555544 2 3444441 11211 11112233899999999999999998887432 345
Q ss_pred HHHHHHHhCCCCCCcEEE-Ee
Q psy4448 154 FIEIMKEYAPKLPRKGVI-HS 173 (487)
Q Consensus 154 ~l~iLk~~~~~~~~~~v~-H~ 173 (487)
.+..+.+.+. .++|+ ||
T Consensus 152 ~i~l~~~~Pd---~~~VldH~ 169 (279)
T COG3618 152 LIPLALKAPD---VNFVLDHC 169 (279)
T ss_pred HHHHHhhCCC---CCEEeccC
Confidence 6666665543 46676 55
No 38
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=97.55 E-value=0.019 Score=60.97 Aligned_cols=82 Identities=12% Similarity=0.124 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHh-cCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc-------hHHHHHHHH
Q psy4448 88 GYLQSLDKIIKE-GGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA-------KSDFIEIMK 159 (487)
Q Consensus 88 ~~l~~L~~ll~~-~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a-------~~d~l~iLk 159 (487)
+.+++|.+++.+ ....+.++. +|+.|...... -...+.+.+++|++++.|+.+|+++. .++++++.+
T Consensus 164 ~~~~~~~~l~~~al~~Ga~g~~-~~~~y~~~~~~----~~~~l~~~~~~a~~~g~~v~~H~e~~~~~e~~av~~~~~~a~ 238 (415)
T cd01297 164 EELAKMRELLREALEAGALGIS-TGLAYAPRLYA----GTAELVALARVAARYGGVYQTHVRYEGDSILEALDELLRLGR 238 (415)
T ss_pred HHHHHHHHHHHHHHHCCCeEEE-cccccCCcccC----CHHHHHHHHHHHHHcCCEEEEEECcccccHHHHHHHHHHHHH
Confidence 446777777632 112466664 66766421112 24456667788999999999999964 345555555
Q ss_pred HhCCCCCCcEEEEecCCC
Q psy4448 160 EYAPKLPRKGVIHSFDGT 177 (487)
Q Consensus 160 ~~~~~~~~~~v~H~FsG~ 177 (487)
+.+.+ -.+.|+-+..
T Consensus 239 ~~g~r---~~i~H~ss~~ 253 (415)
T cd01297 239 ETGRP---VHISHLKSAG 253 (415)
T ss_pred HhCCC---EEEEEEecCC
Confidence 55432 2466876543
No 39
>PRK07213 chlorohydrolase; Provisional
Probab=97.48 E-value=0.047 Score=57.23 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCCC
Q psy4448 374 IVQILEIVAAVRGVEREKLGPIIHQNTLRLFFPH 407 (487)
Q Consensus 374 l~~v~~~iA~ikg~~~~~va~~~~~N~~rlf~~~ 407 (487)
+...+..++...+++..++.+..+.|.-+++++.
T Consensus 293 ~~~e~~~~~~~~~~~~~~~l~~aT~~gA~~lg~~ 326 (375)
T PRK07213 293 IFREMEFIYKLYHIEPKEILKMATINGAKILGLI 326 (375)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCC
Confidence 4445555556668999999999999999999875
No 40
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=97.45 E-value=0.041 Score=58.84 Aligned_cols=121 Identities=21% Similarity=0.182 Sum_probs=66.8
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCC-------HHhHHHHHHHHhcCCCeEEEeecC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTN-------VEDSISSLKLAQSDERLYSTVGCH 75 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~-------~~~~~~~~~la~~~~~v~~avGiH 75 (487)
+||.|+|+..+.. ...+++...-+.+-..||+.++.+..+ .+.++..++.++... +.-+++|
T Consensus 54 ~ID~H~H~~~~~~---------~~~e~~~~~s~aal~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~--~~d~~~~ 122 (447)
T cd01315 54 LIDTHVHINEPGR---------TEWEGFETGTKAAAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKL--HVDVGFW 122 (447)
T ss_pred EeeceeccCCCCc---------cccccHHHHHHHHHhCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCc--eeeEEEE
Confidence 8999999975322 113566666667788999988877521 344444555544322 2222222
Q ss_pred CCCCCCcCCCchhhHHHHHHHHHhcCCCEEEE----EeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc
Q psy4448 76 PTRCSEFENDPEGYLQSLDKIIKEGGKKVVAF----GEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA 150 (487)
Q Consensus 76 P~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaI----GEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a 150 (487)
-.... ...+.++++... .+.+| +.-+.+.+. ..-...+.+.++.|+++++||++|+.+.
T Consensus 123 ~~~~~-------~~~~ei~~l~~~---G~~giKv~~~~~~~~~~~------~~~~~~l~~~~~~a~~~g~~v~vH~e~~ 185 (447)
T cd01315 123 GGLVP-------GNLDQLRPLDEA---GVVGFKCFLCPSGVDEFP------AVDDEQLEEAMKELAKTGSVLAVHAENP 185 (447)
T ss_pred EeecC-------CCHHHHHHHHHc---CCcEEEEEecccCCCCcc------cCCHHHHHHHHHHHHhcCCeEEEEcCCH
Confidence 11000 124455665543 22222 221211111 0123458888899999999999999873
No 41
>PLN02942 dihydropyrimidinase
Probab=97.43 E-value=0.1 Score=56.72 Aligned_cols=126 Identities=14% Similarity=0.087 Sum_probs=67.6
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCC-----HHhHHHHHHHHhcCCCeEEEeecCCC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTN-----VEDSISSLKLAQSDERLYSTVGCHPT 77 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~-----~~~~~~~~~la~~~~~v~~avGiHP~ 77 (487)
+||+|+|+..+-+. ....+++..--..|-..|++.++.+... .+.++...+.+++.. .-+|+|..
T Consensus 59 ~ID~H~H~~~~~~~-------~~~~ed~~s~s~aAl~gGvTTv~D~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~ 128 (486)
T PLN02942 59 GIDPHTHLAMPFMG-------TETIDDFFSGQAAALAGGTTMHIDFVIPVNGNLLAGYEAYEKKAEKSC---MDYGFHMA 128 (486)
T ss_pred EeeeeeccCcccCC-------CcccchHHHHHHHHHcCCCeEEEeCCCCCCCCHHHHHHHHHHHHhhcC---CCEEEEEE
Confidence 89999999865221 0113455555566778899888765321 233333333333322 22344421
Q ss_pred CCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC
Q psy4448 78 RCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN 149 (487)
Q Consensus 78 ~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~ 149 (487)
.. .. .+..++++.+++.. ..+.++++ ++.+.. ... .-.+.+.+.++.|++++.||++|+.+
T Consensus 129 ~~-~~---~~~~~~e~~~l~~~--~gv~~~k~-~~~~~~-~~~---~~~~~l~~~~~~a~~~~~~v~~HaE~ 189 (486)
T PLN02942 129 IT-KW---DDTVSRDMETLVKE--KGINSFKF-FMAYKG-SLM---VTDELLLEGFKRCKSLGALAMVHAEN 189 (486)
T ss_pred ec-CC---cHhHHHHHHHHHHh--CCCceEEE-EEecCC-CCC---CCHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 11 11 11224566666654 24555653 343321 111 11346888899999999999999754
No 42
>PLN02795 allantoinase
Probab=97.42 E-value=0.05 Score=59.52 Aligned_cols=127 Identities=16% Similarity=0.194 Sum_probs=71.8
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEEC--CCH-HhHHHHHHHHhcC--CCeEEEeecCCC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTG--TNV-EDSISSLKLAQSD--ERLYSTVGCHPT 77 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~--~~~-~~~~~~~~la~~~--~~v~~avGiHP~ 77 (487)
+||+|+|+.++.+ ...+++....+.+...||+.++.+. +.| .+....++...+. ...+.-+|+|..
T Consensus 101 ~ID~H~H~~~~~~---------~~~e~~~~~~~aa~~gGvTtv~dmp~~~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~ 171 (505)
T PLN02795 101 LIDVHVHLNEPGR---------TEWEGFPTGTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEAAKGKLYVDVGFWGG 171 (505)
T ss_pred EEecccCcCCCCc---------cchhHHHHHHHHHHcCCcEEEECCCCCCCCCCChHHHHHHHHHHhccCceeeeeceec
Confidence 8999999976432 0135666666777788999888774 322 2233333322111 234556788763
Q ss_pred CCCCcCCCchhhHHHHHHHHHhcCCCEEEE----EeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCch
Q psy4448 78 RCSEFENDPEGYLQSLDKIIKEGGKKVVAF----GEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAK 151 (487)
Q Consensus 78 ~~~~~~~~~~~~l~~L~~ll~~~~~~vvaI----GEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~ 151 (487)
-... ....++.+.++.+. .+++| |.-|.+.+. ......+.+.++.|+++|+||++|+.+..
T Consensus 172 ~~~~----~~~~~~~l~~~~~~---G~~g~k~f~~~~~~~~~~------~~~~~~l~~~~~~a~~~g~~v~iH~E~~~ 236 (505)
T PLN02795 172 LVPE----NAHNASVLEELLDA---GALGLKSFMCPSGINDFP------MTTATHIKAALPVLAKYGRPLLVHAEVVS 236 (505)
T ss_pred ccCc----chhHHHHHHHHHHC---CCcEEEEEecccCCCCcc------cCCHHHHHHHHHHHHHhCCEEEEecCChh
Confidence 2211 11234556665532 22222 111221111 12346788899999999999999998743
No 43
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=97.36 E-value=0.0095 Score=60.09 Aligned_cols=143 Identities=18% Similarity=0.304 Sum_probs=81.8
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC----CHHhHHHHHHHHhcCCCeEEEeecCCCC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT----NVEDSISSLKLAQSDERLYSTVGCHPTR 78 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~----~~~~~~~~~~la~~~~~v~~avGiHP~~ 78 (487)
+||.|.|.+...- ...-+.+.+ +...||+.+|-.|. +...|.+.+-.+++ .+|++.+-+-|--
T Consensus 59 ~iDlHvHvy~ggt---------~~~v~pd~~---ga~~GvTTvVDAGSaGaanf~gF~r~vie~Sr-~RI~Aflnvs~~G 125 (386)
T COG3964 59 LIDLHVHVYYGGT---------EGGVRPDMY---GAPNGVTTVVDAGSAGAANFDGFYRTVIEASR-VRIKAFLNVSPPG 125 (386)
T ss_pred eeeeeeEEecCCC---------ccCcCHHHc---cccCCceEEEecCCcCccchhhHHHHhhcchh-heeeeeeeccCcc
Confidence 7999999875311 112344433 34678988887654 45666655433332 2345444444421
Q ss_pred C---CCcCCCchhhHHHHHHHHHhcCCCEE---------EEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEE
Q psy4448 79 C---SEFENDPEGYLQSLDKIIKEGGKKVV---------AFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLH 146 (487)
Q Consensus 79 ~---~~~~~~~~~~l~~L~~ll~~~~~~vv---------aIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH 146 (487)
. .+..+-..-+.+++.+...+|.+-++ .+||-|+- =+...+++|..+++|+++|
T Consensus 126 l~a~nE~~d~~nid~d~i~aa~reh~d~ivGlKvR~s~~~~g~~Git--------------Pl~la~~ia~~~klPlmvH 191 (386)
T COG3964 126 LTASNELYDPDNIDEDKIHAAFREHRDVIVGLKVRVSTEDIGEYGIT--------------PLTLALRIANDLKLPLMVH 191 (386)
T ss_pred eeeehhhCChhhCCHHHHHHHHHhCcCcEEEEEEEeeeccccccCCc--------------hHHHHHHHHhhcCCceEEe
Confidence 1 11110001123455666666544333 34555553 1356788999999999999
Q ss_pred ecCc---hHHHHHHHHHhCCCCCCcEEEEecCCCH
Q psy4448 147 CRNA---KSDFIEIMKEYAPKLPRKGVIHSFDGTP 178 (487)
Q Consensus 147 ~r~a---~~d~l~iLk~~~~~~~~~~v~H~FsG~~ 178 (487)
.-.. .+|++++|++ ..+|-|||+|.+
T Consensus 192 igePp~~~dEvlerL~~------GDIitHcfngkp 220 (386)
T COG3964 192 IGEPPVLMDEVLERLRR------GDIITHCFNGKP 220 (386)
T ss_pred cCCCCccHHHHHHhccC------CceeeeeccCCC
Confidence 9774 4566666642 258999999864
No 44
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=97.29 E-value=0.071 Score=57.16 Aligned_cols=124 Identities=13% Similarity=0.035 Sum_probs=66.9
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEEC--CC-----HHhHHHHHHHHhcCCCeEEEeecC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTG--TN-----VEDSISSLKLAQSDERLYSTVGCH 75 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~--~~-----~~~~~~~~~la~~~~~v~~avGiH 75 (487)
+||+|+|+..+-. ...+++....+.+...||+.++.+. +. .+.+...++.++... +.-+++|
T Consensus 53 ~ID~H~H~~~~~~---------~~~~~~~~~~~~~~~gGvTtv~dmp~~~~p~~~~~~~~~~~~~~~~~~~--~~d~~~~ 121 (443)
T TIGR03178 53 VVDTHVHINEPGR---------TEWEGFETGTRAAAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKL--AVDVGFW 121 (443)
T ss_pred EeccccccCCCCc---------cccchHHHHHHHHHcCCeEEEEECCCCCCCCCCcHHHHHHHHHHhccCC--ceeEEEE
Confidence 8999999975321 1135666666667788999888865 21 233444444444322 2222333
Q ss_pred CCCCCCcCCCchhhHHHHHHHHHhcCCCE-EEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc
Q psy4448 76 PTRCSEFENDPEGYLQSLDKIIKEGGKKV-VAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA 150 (487)
Q Consensus 76 P~~~~~~~~~~~~~l~~L~~ll~~~~~~v-vaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a 150 (487)
..... +.++.+.++.......+ +..|.-|.+.+. ......+.+.++.|+++++++++|+...
T Consensus 122 ~~~~~-------~~~~~i~~~~~~G~~~ik~~~~~~~~~~~~------~~~~~~l~~~~~~a~~~g~~v~~H~E~~ 184 (443)
T TIGR03178 122 GGLVP-------YNLDDLRELDEAGVVGFKAFLSPSGDDEFP------HVDDWQLYKGMRELARLGQLLLVHAENP 184 (443)
T ss_pred eccCC-------CCHHHHHHHHHCCCcEEEEEecccCCCCcc------cCCHHHHHHHHHHHHhcCCeEEEeccCh
Confidence 11111 12455666654310011 222333333221 1223457778889999999999997663
No 45
>PRK07369 dihydroorotase; Provisional
Probab=97.29 E-value=0.023 Score=60.63 Aligned_cols=118 Identities=15% Similarity=0.122 Sum_probs=74.3
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC------CHHhHHHHHHHHhcCC--CeEEEeec
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT------NVEDSISSLKLAQSDE--RLYSTVGC 74 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~------~~~~~~~~~~la~~~~--~v~~avGi 74 (487)
+||.|+|+..+.+ ...+++....+.|...||+.++.+.. +.+.++...+.+++.. .+....++
T Consensus 59 ~ID~H~H~~~~~~---------~~~e~~~s~~~aa~~GGvTtv~~~pn~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~ 129 (418)
T PRK07369 59 LVDLYSHSGEPGF---------EERETLASLAAAAAAGGFTRVAILPDTFPPLDNPATLARLQQQAQQIPPVQLHFWGAL 129 (418)
T ss_pred EEecccccCCCCc---------CCCccHHHHHHHHHhCCceEEEECCCCCCCCCCHHHHHHHHHHhcccCceeEEEEEEE
Confidence 8999999876432 12468888888888999998887653 3566666666665543 23334444
Q ss_pred CCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC
Q psy4448 75 HPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN 149 (487)
Q Consensus 75 HP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~ 149 (487)
-++.. ...++++.++... .++++- +++.. .+ ...+.+.++.++++++|+++|+.+
T Consensus 130 ~~~~~-------~~~~~ei~~l~~~---Gv~~f~----~~~~~--~~----~~~l~~~~~~~~~~~~~v~~H~Ed 184 (418)
T PRK07369 130 TLGGQ-------GKQLTELAELAAA---GVVGFT----DGQPL--EN----LALLRRLLEYLKPLGKPVALWPCD 184 (418)
T ss_pred eeCCC-------CccHhhHHHHHHC---CCEEEE----CCCcC--CC----HHHHHHHHHHHHhcCCeEEEecCC
Confidence 33321 1235566666543 466664 22221 11 235677778899999999999975
No 46
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=97.29 E-value=0.037 Score=59.22 Aligned_cols=139 Identities=14% Similarity=0.157 Sum_probs=71.0
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC-CH-HhHHHHHHHHhcC--CCeEEEeecCCCC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT-NV-EDSISSLKLAQSD--ERLYSTVGCHPTR 78 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~-~~-~~~~~~~~la~~~--~~v~~avGiHP~~ 78 (487)
+||+|+|+...-.. ....+++....+.+...||+.++.+.. .+ .+...+++...+. ...+.-+|+|...
T Consensus 53 lID~H~H~~~~~~~-------~~~~e~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 125 (447)
T cd01314 53 GIDPHTHLELPFMG-------TVTADDFESGTRAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKADGKSVIDYGFHMII 125 (447)
T ss_pred EEeccccccccccC-------ccCcchHHHHHHHHHhCCCcEEEeCCCCCCCCCHHHHHHHHHHHhcCCCcccEEEEEee
Confidence 89999999753110 011345555556667789998887652 23 3444444332221 2223334555432
Q ss_pred CCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchHHHHHHH
Q psy4448 79 CSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIM 158 (487)
Q Consensus 79 ~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iL 158 (487)
.. . ..+.++.+++++.. .+..|. +.+...... ..-.+.+++.++.|++++++|.+|+ ....++-...
T Consensus 126 ~~-~---~~~~~~~~~~l~~~---g~~~ik-~~~~~~~~~----~~s~~~l~~~~~~a~~~g~~v~~H~-E~~~~~~~~~ 192 (447)
T cd01314 126 TD-W---TDSVIEELPELVKK---GISSFK-VFMAYKGLL----MVDDEELLDVLKRAKELGALVMVHA-ENGDVIAELQ 192 (447)
T ss_pred cC-C---ChHHHHHHHHHHHc---CCCEEE-EEeccCCCC----CCCHHHHHHHHHHHHhcCCeEEEEc-CCHHHHHHHH
Confidence 11 1 12335566666653 222232 112211101 1123467788899999999999997 3333333344
Q ss_pred HHh
Q psy4448 159 KEY 161 (487)
Q Consensus 159 k~~ 161 (487)
+++
T Consensus 193 ~~~ 195 (447)
T cd01314 193 KKL 195 (447)
T ss_pred HHH
Confidence 433
No 47
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=97.28 E-value=0.091 Score=55.05 Aligned_cols=28 Identities=14% Similarity=0.075 Sum_probs=23.0
Q ss_pred HHHHhhCCCHHHHHHHHHHHHHHhcCCC
Q psy4448 380 IVAAVRGVEREKLGPIIHQNTLRLFFPH 407 (487)
Q Consensus 380 ~iA~ikg~~~~~va~~~~~N~~rlf~~~ 407 (487)
.+.+..+++.+++.+.++.|..++|++.
T Consensus 315 ~~v~~~~i~~~~al~~~T~npA~~lg~~ 342 (387)
T cd01308 315 EAVKCGDIPLEVALRVITSNVARILKLR 342 (387)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHhCCC
Confidence 3334446999999999999999999986
No 48
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=97.27 E-value=0.025 Score=59.64 Aligned_cols=144 Identities=11% Similarity=0.088 Sum_probs=78.1
Q ss_pred HHHHhcCCCEEEEECC-CHHhHHHHHHHHhcC-CCeEEEeec----CCCCCCCcCCCchhhHHHHHHHHHhcCC-CEEEE
Q psy4448 35 NRAWNAGLEKIIVTGT-NVEDSISSLKLAQSD-ERLYSTVGC----HPTRCSEFENDPEGYLQSLDKIIKEGGK-KVVAF 107 (487)
Q Consensus 35 ~ra~~~GV~~ii~v~~-~~~~~~~~~~la~~~-~~v~~avGi----HP~~~~~~~~~~~~~l~~L~~ll~~~~~-~vvaI 107 (487)
.++...|++.+...+. .+..+..+.+.+++. ++++.+.+. .|.... +.....++..+++++.... ..+.+
T Consensus 97 ~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~d~~~~~~~~---~~~~~~~~~~~~~i~~~~~~g~i~~ 173 (401)
T TIGR02967 97 DELLRNGTTTALVFATVHPESVDALFEAALKRGMRMIAGKVLMDRNAPDYLR---DTAESSYDESKALIERWHGKGRLLY 173 (401)
T ss_pred HHHHhCCCcEEEeccccCHHHHHHHHHHHHHCCCeEEEeeeeecCCCCcccc---cCHHHHHHHHHHHHHHHhCcCCceE
Confidence 4677889998876643 344555555555544 344333222 232211 1112334445555543111 11222
Q ss_pred EeeCCCCCCCCCCChHHHHHHHHHHHHHhhhC-CCCEEEEecCchHHHH-------------HHHHHhCCCCCCcEEEEe
Q psy4448 108 GEFGLDYDRVQYCPVETQLKYFRKQLDLSVTH-KLPLFLHCRNAKSDFI-------------EIMKEYAPKLPRKGVIHS 173 (487)
Q Consensus 108 GEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el-~lPViIH~r~a~~d~l-------------~iLk~~~~~~~~~~v~H~ 173 (487)
| ++.... . ..-.+.+++..++|+++ ++||.+|+-....+.- +.+.+.+...+...+.||
T Consensus 174 ~-~~~~~~--~----~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~l~~~g~lg~~~~~~H~ 246 (401)
T TIGR02967 174 A-VTPRFA--P----TSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFPEAKDYLDVYDHYGLLGRRSVFAHC 246 (401)
T ss_pred E-EECCcC--C----cCcHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcCCCCcHHHHHHHCCCCCCCeEEEec
Confidence 1 111111 1 11235789999999999 9999999976544433 334444321222346899
Q ss_pred cCCCHHHHHHHHcCc
Q psy4448 174 FDGTPFQAVDSLKTK 188 (487)
Q Consensus 174 FsG~~~~a~~~l~~~ 188 (487)
+.-+.+.++.+.+.+
T Consensus 247 ~~~~~~~~~~l~~~g 261 (401)
T TIGR02967 247 IHLSDEECQRLAETG 261 (401)
T ss_pred ccCCHHHHHHHHHcC
Confidence 999999988888774
No 49
>PRK06189 allantoinase; Provisional
Probab=97.21 E-value=0.16 Score=54.73 Aligned_cols=120 Identities=15% Similarity=0.111 Sum_probs=66.9
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEEC--C-----CHHhHHHHHHHHhcCCCeEEEeecC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTG--T-----NVEDSISSLKLAQSDERLYSTVGCH 75 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~--~-----~~~~~~~~~~la~~~~~v~~avGiH 75 (487)
+||+|+|+..+.. ...+++....+.+...||+.++.+. + +.+.+....++++... +.-+++|
T Consensus 56 ~ID~H~H~~~~~~---------~~~~~~~~~~~aa~~gGvTt~~~~p~~t~p~~~~~~~~~~~~~~~~~~~--~~d~~~~ 124 (451)
T PRK06189 56 MIDVHVHFNEPGR---------THWEGFATGSAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQKS--AVDFALW 124 (451)
T ss_pred EEEeeeccCCCCC---------CCcccHHHHHHHHHhCCEEEEEECCCCCCCCCCcHHHHHHHHHHhCcCc--eEeEEEE
Confidence 8999999876421 1246777777888899999888653 2 3455555566665432 3333333
Q ss_pred CCCCCCcCCCchhhHHHHHHHHHhcCCCEEEE----EeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC
Q psy4448 76 PTRCSEFENDPEGYLQSLDKIIKEGGKKVVAF----GEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN 149 (487)
Q Consensus 76 P~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaI----GEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~ 149 (487)
-.... ..+++|.++.+. .++++ +..|.+.++ ..-...+.+.++.+.++++++++|+.+
T Consensus 125 ~~~~~-------~~~~~l~~l~~~---Gv~~~k~f~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~H~e~ 186 (451)
T PRK06189 125 GGLVP-------GNLEHLRELAEA---GVIGFKAFMSNSGTDEFR------SSDDLTLYEGMKEIAALGKILALHAES 186 (451)
T ss_pred ecccc-------cCHHHHHHHHHc---CCcEEEEEccccCCCCcC------cCCHHHHHHHHHHHHhcCCeEEEECCC
Confidence 11100 124566666543 33332 111221111 011234455667777899999999976
No 50
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=97.19 E-value=0.013 Score=60.01 Aligned_cols=147 Identities=13% Similarity=0.080 Sum_probs=79.9
Q ss_pred HHHHHHhcCCCEEEEECCCHHhH-HHHHHHHh-cCCCeEEE------eecCCCCCC-----------CcCCCchhhHHHH
Q psy4448 33 VLNRAWNAGLEKIIVTGTNVEDS-ISSLKLAQ-SDERLYST------VGCHPTRCS-----------EFENDPEGYLQSL 93 (487)
Q Consensus 33 vl~ra~~~GV~~ii~v~~~~~~~-~~~~~la~-~~~~v~~a------vGiHP~~~~-----------~~~~~~~~~l~~L 93 (487)
-++++-..||+.+..++...... ++.++.-. .-|+++.+ -|-|+.+.. ...++.++..+.+
T Consensus 47 ~~~~~l~~GvTtv~d~g~~~~~~~~~~~~~g~~~gPr~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 126 (342)
T cd01299 47 QARAALRAGFTTVRDAGGADYGLLRDAIDAGLIPGPRVFASGRALSQTGGHGDPRGLSGLFPAGGLAAVVDGVEEVRAAV 126 (342)
T ss_pred HHHHHHhCCCcEEEeCCCcchHHHHHHHHcCCccCCceeecchhhcccCCCCccccccccccccCCcceecCHHHHHHHH
Confidence 45667788999998877644333 22221111 12444322 233443210 0111234445667
Q ss_pred HHHHHhcCCCE--EEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHhCCCCCCcEEE
Q psy4448 94 DKIIKEGGKKV--VAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVI 171 (487)
Q Consensus 94 ~~ll~~~~~~v--vaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~~~~~~~~~v~ 171 (487)
++++....+.+ ..-|..+-.... ......-.+.|++.+++|++.++||.+|+-.. ..+...+ +.+ ...+.
T Consensus 127 ~~~~~~G~~~iK~~~~g~~~~~~~~--~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~-~~i~~~l-~~G----~~~i~ 198 (342)
T cd01299 127 REQLRRGADQIKIMATGGVLSPGDP--PPDTQFSEEELRAIVDEAHKAGLYVAAHAYGA-EAIRRAI-RAG----VDTIE 198 (342)
T ss_pred HHHHHhCCCEEEEeccCCcCCCCCC--CcccCcCHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHHH-HcC----CCEEe
Confidence 77776532222 222322221111 00012235678899999999999999999753 2222233 333 25799
Q ss_pred EecCCCHHHHHHHHcC
Q psy4448 172 HSFDGTPFQAVDSLKT 187 (487)
Q Consensus 172 H~FsG~~~~a~~~l~~ 187 (487)
|++.-+.+.++.+.+.
T Consensus 199 H~~~~~~~~~~~l~~~ 214 (342)
T cd01299 199 HGFLIDDETIELMKEK 214 (342)
T ss_pred ecCCCCHHHHHHHHHC
Confidence 9999999888888777
No 51
>PRK02382 dihydroorotase; Provisional
Probab=97.18 E-value=0.074 Score=57.10 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=74.8
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC------CHHhHHHHHHHHhcCCCeEEEeecCC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT------NVEDSISSLKLAQSDERLYSTVGCHP 76 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~------~~~~~~~~~~la~~~~~v~~avGiHP 76 (487)
+||.|+|+....+ ...+++....+.+...||+.++.+.. +++.+....+.+++.. +..+|+|-
T Consensus 56 ~ID~H~H~~~~g~---------~~~e~~~~~~~aa~~gGvTtv~~~~~t~p~~~~~~~~~~~~~~a~~~s--~v~~~~~~ 124 (443)
T PRK02382 56 GIDVHVHFREPGY---------THKETWYTGSRSAAAGGVTTVVDQPNTDPPTVDGESFDEKAELAARKS--IVDFGING 124 (443)
T ss_pred EeeeeeeccCCCC---------CchhhHHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCc--eEEEEEEe
Confidence 8999999875422 11356667777788899998886543 3445555555555433 33455542
Q ss_pred CCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc
Q psy4448 77 TRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA 150 (487)
Q Consensus 77 ~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a 150 (487)
.. . ..++.+..++.. .+..+|++-..++. .. ...-...+.+.++.|+++++||++|+.+.
T Consensus 125 ~~---~-----~~~~~l~~l~~~---gv~~~gkv~~~~~~-~~--~~~~~~~l~~~~~~a~~~g~~v~~H~e~~ 184 (443)
T PRK02382 125 GV---T-----GNWDPLESLWER---GVFALGEIFMADST-GG--MGIDEELFEEALAEAARLGVLATVHAEDE 184 (443)
T ss_pred ee---c-----cchhhHHHHHhc---CccceeEEEEEecC-CC--cccCHHHHHHHHHHHHhcCCeEEEecCCH
Confidence 11 1 113456666543 57778877654322 10 11112567788889999999999999764
No 52
>PRK09228 guanine deaminase; Provisional
Probab=97.09 E-value=0.14 Score=54.79 Aligned_cols=117 Identities=11% Similarity=0.138 Sum_probs=62.6
Q ss_pred HHHHhcCCCEEEEECC-CHHhHHHHHHHHhcCC-CeEEEeecC----CCCCCCcCCCchhhHHHHHHHHHhcCCC-EEEE
Q psy4448 35 NRAWNAGLEKIIVTGT-NVEDSISSLKLAQSDE-RLYSTVGCH----PTRCSEFENDPEGYLQSLDKIIKEGGKK-VVAF 107 (487)
Q Consensus 35 ~ra~~~GV~~ii~v~~-~~~~~~~~~~la~~~~-~v~~avGiH----P~~~~~~~~~~~~~l~~L~~ll~~~~~~-vvaI 107 (487)
.++-..|++.++..+. .+..++.+.+.+++.+ +++.+.|+. |.. +.+..++.++..++++.....+ .+.+
T Consensus 122 ~e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (433)
T PRK09228 122 DELLRNGTTTALVFGTVHPQSVDALFEAAEARNMRMIAGKVLMDRNAPDG---LRDTAESGYDDSKALIERWHGKGRLLY 198 (433)
T ss_pred HHHHhCCceEEEeccccCHHHHHHHHHHHHHcCCeEEeeeeeecCCCCcc---cccCHHHHHHHHHHHHHHHhCCCCceE
Confidence 3456789988776543 3556666666555543 344444543 221 1111122333444444431111 1111
Q ss_pred EeeCCCCCCCCCCChHHHHHHHHHHHHHhhhC-CCCEEEEecCchHHHHHHHHHh
Q psy4448 108 GEFGLDYDRVQYCPVETQLKYFRKQLDLSVTH-KLPLFLHCRNAKSDFIEIMKEY 161 (487)
Q Consensus 108 GEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el-~lPViIH~r~a~~d~l~iLk~~ 161 (487)
| ++... . ...+ .+.+++..++|+++ ++|+.+|.-....+.-.+++.+
T Consensus 199 ~-~~p~~-~-~t~s----~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~~~ 246 (433)
T PRK09228 199 A-ITPRF-A-PTST----PEQLEAAGALAREHPDVWIQTHLSENLDEIAWVKELF 246 (433)
T ss_pred E-EECCc-C-CcCC----HHHHHHHHHHHHHCCCCceEEeecCChhHHHHHHHHc
Confidence 1 12211 1 1111 46799999999998 9999999998877765555544
No 53
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=97.03 E-value=0.016 Score=61.01 Aligned_cols=65 Identities=15% Similarity=0.117 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhhhCCCCEEEEecCchHHHH-----------------------------HHHHHhCCCCCCcEEEEe
Q psy4448 123 ETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFI-----------------------------EIMKEYAPKLPRKGVIHS 173 (487)
Q Consensus 123 e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l-----------------------------~iLk~~~~~~~~~~v~H~ 173 (487)
..+.+.|++..++|+++++|+.+|......|.. +.|.+.+.-.+...+.||
T Consensus 159 ~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~g~~pv~~l~~~g~L~~~~~~~H~ 238 (381)
T cd01312 159 SVHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATAIDFLDMLGGLGTRVSFVHC 238 (381)
T ss_pred ccCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccccccCCCCHHHHHHHcCCCCCCcEEEEC
Confidence 557789999999999999999999987655533 344444322233468899
Q ss_pred cCCCHHHHHHHHcC
Q psy4448 174 FDGTPFQAVDSLKT 187 (487)
Q Consensus 174 FsG~~~~a~~~l~~ 187 (487)
..-+.++++.+.+.
T Consensus 239 ~~l~~~~~~~l~~~ 252 (381)
T cd01312 239 VYANLEEAEILASR 252 (381)
T ss_pred CcCCHHHHHHHHHc
Confidence 99998888888776
No 54
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=97.02 E-value=0.018 Score=59.84 Aligned_cols=131 Identities=16% Similarity=0.138 Sum_probs=72.8
Q ss_pred HHHHHHhcCCCEEEEECC-C----HHhHHHHHHHHhcCC-Ce-EEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEE
Q psy4448 33 VLNRAWNAGLEKIIVTGT-N----VEDSISSLKLAQSDE-RL-YSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVV 105 (487)
Q Consensus 33 vl~ra~~~GV~~ii~v~~-~----~~~~~~~~~la~~~~-~v-~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vv 105 (487)
.+.++...||+.+...+. . ...++...++.+.+. .+ ....+++|... +. .++..+.+++++... ..
T Consensus 101 ~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~v~~~~~~g---~~ 173 (398)
T cd01293 101 ALELAIAHGTTAIRTHVDVDPAAGLKALEALLELREEWADLIDLQIVAFPQHGL--LS--TPGGEELMREALKMG---AD 173 (398)
T ss_pred HHHHHHHcChhheeeeecccccccchHHHHHHHHHHHhhccceEEEEeccCccc--cC--CCCHHHHHHHHHHhC---CC
Confidence 356677889987643221 1 123445555555443 22 22334444321 11 122334556665542 12
Q ss_pred EEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchH-------HHHHHHHHhCCCCCCcEEEEecCCC
Q psy4448 106 AFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKS-------DFIEIMKEYAPKLPRKGVIHSFDGT 177 (487)
Q Consensus 106 aIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~-------d~l~iLk~~~~~~~~~~v~H~FsG~ 177 (487)
.+| |+++.. ......+.|++.+++|+++++|+.+|+..... +.++.+.+.+.. +...+.||..-+
T Consensus 174 ~~~--~~~~~~----~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~g~~-~~~~i~H~~~~~ 245 (398)
T cd01293 174 VVG--GIPPAE----IDEDGEESLDTLFELAQEHGLDIDLHLDETDDPGSRTLEELAEEAERRGMQ-GRVTCSHATALG 245 (398)
T ss_pred EEe--CCCCCc----CCccHHHHHHHHHHHHHHhCCCCEEEeCCCCCcchhHHHHHHHHHHHhCCC-CCEEeeecchhh
Confidence 343 566542 12345688999999999999999999986532 346666665532 224678997644
No 55
>PRK08323 phenylhydantoinase; Validated
Probab=96.98 E-value=0.23 Score=53.28 Aligned_cols=128 Identities=14% Similarity=0.130 Sum_probs=68.9
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCC--HHhHHHHHHHHhcC--CCeEEEeecCCCC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTN--VEDSISSLKLAQSD--ERLYSTVGCHPTR 78 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~--~~~~~~~~~la~~~--~~v~~avGiHP~~ 78 (487)
+||+|+|+..+.. + ....+++....+.+...||+.++.+... ..+....++..... .....-+|+|...
T Consensus 51 lID~H~H~~~~~~-----~--~~~~e~~~~~~~~a~~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 123 (459)
T PRK08323 51 GIDPHTHMEMPFG-----G--TVSSDDFETGTRAAACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAVIDYGFHMII 123 (459)
T ss_pred EEeeeeccccccC-----C--ccccCcHHHHHHHHHhCCCCEEEeCcCCCCCCChHHHHHHHHHHhccCceEEEEEEEEe
Confidence 8999999975311 0 0113556555566778999988876432 12333333322211 2334456666432
Q ss_pred CCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC
Q psy4448 79 CSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN 149 (487)
Q Consensus 79 ~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~ 149 (487)
.. . ..+.++++++++.. .+..|. +++.+...... -.+.+++.++.|+++++||.+|+..
T Consensus 124 ~~-~---~~~~~~~~~~~~~~---g~~~ik-~~~~~~~~~~~----s~~~l~~~~~~a~~~g~~v~~H~e~ 182 (459)
T PRK08323 124 TD-W---NEVVLDEMPELVEE---GITSFK-LFMAYKGALML----DDDELLRALQRAAELGALPMVHAEN 182 (459)
T ss_pred cC-C---cHHHHHHHHHHHHc---CCCEEE-EEEecCCCCCC----CHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 11 1 12345677777754 233332 23332110011 1234668889999999999999854
No 56
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=96.96 E-value=0.0099 Score=61.48 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=85.2
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC------CHHhHHHHHHHHhcCCCeEEEeecCC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT------NVEDSISSLKLAQSDERLYSTVGCHP 76 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~------~~~~~~~~~~la~~~~~v~~avGiHP 76 (487)
+||.|+|+..+.+ ....++++.-.+.|..-||+.++.+.. +.+.++...+.+++. .+.-+|+|-
T Consensus 7 ~iD~HvH~r~pg~--------~~~~e~~~t~t~aA~~GG~Ttv~~mpn~~p~~~~~~~~~~~~~~a~~~--~~~d~~~~~ 76 (337)
T cd01302 7 FIDIHVHLRDPGG--------TTYKEDFESGSRAAAAGGVTTVIDMPNTGPPPIDLPAIELKIKLAEES--SYVDFSFHA 76 (337)
T ss_pred eeEeeeccCCCCC--------CCchhHHHHHHHHHHhCCCcEEEECCCCCCCCCcHHHHHHHHHHhCcC--cEeeEEEEE
Confidence 7999999987533 012467777778888899998887632 334444444444432 234444442
Q ss_pred CCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchHHHHH
Q psy4448 77 TRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIE 156 (487)
Q Consensus 77 ~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l~ 156 (487)
.-.. ...+++|.++.+. .+.++ -+.+.+.. ... .......+.+.++.+.++++||++|+. ..+.
T Consensus 77 ~~~~------~~~~~el~~l~~~---Gv~g~-K~f~~~~~-~~~-~~~~~~~l~~~~~~~~~~g~~v~~H~E----r~~~ 140 (337)
T cd01302 77 GIGP------GDVTDELKKLFDA---GINSL-KVFMNYYF-GEL-FDVDDGTLMRTFLEIASRGGPVMVHAE----RAAQ 140 (337)
T ss_pred eccC------ccCHHHHHHHHHc---CCcEE-EEEEeccC-CCc-cccCHHHHHHHHHHHHhcCCeEEEeHH----HHHH
Confidence 1111 1125566666543 34444 24443321 000 012233455666777778999999998 6667
Q ss_pred HHHHhCCCCCCcE-EEEecC-CCHHHHHHHH
Q psy4448 157 IMKEYAPKLPRKG-VIHSFD-GTPFQAVDSL 185 (487)
Q Consensus 157 iLk~~~~~~~~~~-v~H~Fs-G~~~~a~~~l 185 (487)
+.++.+. +. +.|.-+ .+.+.++++-
T Consensus 141 la~~~g~----~l~i~Hiss~~~le~i~~ak 167 (337)
T cd01302 141 LAEEAGA----NVHIAHVSSGEALELIKFAK 167 (337)
T ss_pred HHHHhCC----cEEEEeCCCHHHHHHHHHHH
Confidence 7776553 34 667644 3334444433
No 57
>PRK08044 allantoinase; Provisional
Probab=96.95 E-value=0.24 Score=53.37 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=69.8
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC-------CHHhHHHHHHHHhcCCCe--EEEee
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT-------NVEDSISSLKLAQSDERL--YSTVG 73 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~-------~~~~~~~~~~la~~~~~v--~~avG 73 (487)
+||.|+|+..+.. ...+++....+.+...||+.++.++. +++.++...+.+++...+ ....|
T Consensus 55 ~iD~h~h~~~~~~---------~~~e~~~~~~~aa~~gGvTtv~d~~~~~~p~~~~~~~~~~~~~~~~~~s~vd~~~~~~ 125 (449)
T PRK08044 55 MVDAHTHISEPGR---------SHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGG 125 (449)
T ss_pred eeccccccCCCCc---------cccccHHHHHHHHHhCCceEEECCccCCCCCCCcHHHHHHHHHHhccCCeeeEEEEee
Confidence 7999999976432 11467888888999999999888752 455555556665544333 22223
Q ss_pred cCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCC---CCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc
Q psy4448 74 CHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDR---VQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA 150 (487)
Q Consensus 74 iHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~---~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a 150 (487)
+-+. .++++.++... .++++- +=+-|.. ............+.+.++.+.++|.||++|+.+.
T Consensus 126 ~~~~-----------~~~ei~~l~~~---gv~~fk-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~ 190 (449)
T PRK08044 126 LVSY-----------NLDRLHELDEV---GVVGFK-CFVATCGDRGIDNDFRDVNDWQFYKGAQKLGELGQPVLVHCENA 190 (449)
T ss_pred eCCC-----------CHHHHHHHHHc---CceEEE-EEecccCcccccCCccCcCHHHHHHHHHHHHhcCCEEEEecCCH
Confidence 3221 24456665543 344431 1010100 0000011122356666777778999999999874
No 58
>PRK13404 dihydropyrimidinase; Provisional
Probab=96.95 E-value=0.28 Score=53.35 Aligned_cols=129 Identities=13% Similarity=0.107 Sum_probs=69.8
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCC--HHhHHHHHHHHhcC--CCeEEEeecCCCC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTN--VEDSISSLKLAQSD--ERLYSTVGCHPTR 78 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~--~~~~~~~~~la~~~--~~v~~avGiHP~~ 78 (487)
+||+|+|+..+... | ....+++......+...||+.++.++.+ +......++..... ...+..+|+|-.-
T Consensus 56 ~ID~H~H~~~~~~~----~--~~~~e~~~~~s~aa~~gGvTtv~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~ 129 (477)
T PRK13404 56 GVDSHCHIDQPSGD----G--IMMADDFYTGTVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAGKAVIDYAFHLIV 129 (477)
T ss_pred EEEeEEcCCccccC----C--ccccchHHHHHHHHHcCCccEEEEccCCCCCCCHHHHHHHHHHHhccCcEEEEEEEEEe
Confidence 89999999653110 0 1124677777788889999988875532 22333333222111 2234455665311
Q ss_pred CCCcCCCchhhH-HHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc
Q psy4448 79 CSEFENDPEGYL-QSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA 150 (487)
Q Consensus 79 ~~~~~~~~~~~l-~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a 150 (487)
.. . .++.. +++.+++.. .+.+|. +-+++.. ...+ ...+.+.++.|.++|++|.+|+.+.
T Consensus 130 ~~-~---~~~~~~~~v~~l~~~---G~~~iK-i~~~~~~---~~~~--~~~l~~~~~~a~~~g~~V~~Hae~~ 189 (477)
T PRK13404 130 AD-P---TEEVLTEELPALIAQ---GYTSFK-VFMTYDD---LKLD--DRQILDVLAVARRHGAMVMVHAENH 189 (477)
T ss_pred cC-C---ChhhHHHHHHHHHHc---CCCEEE-EEecCCC---CCCC--HHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 11 1 11222 456666543 344442 2222211 0111 2568888899999999999999764
No 59
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=96.87 E-value=0.1 Score=52.96 Aligned_cols=125 Identities=18% Similarity=0.160 Sum_probs=78.0
Q ss_pred HHhcCCCEEEEECCC--HHhHHHHHHHHhcC-CCeEEEeecC-----CCCCCCcCCCchhhHHHHHHHHHh--------c
Q psy4448 37 AWNAGLEKIIVTGTN--VEDSISSLKLAQSD-ERLYSTVGCH-----PTRCSEFENDPEGYLQSLDKIIKE--------G 100 (487)
Q Consensus 37 a~~~GV~~ii~v~~~--~~~~~~~~~la~~~-~~v~~avGiH-----P~~~~~~~~~~~~~l~~L~~ll~~--------~ 100 (487)
....|+..+|-++.. =.+...+.+.++.- -+|.++-|+| |.+.... ..+.+.+++.+ .
T Consensus 57 ~~a~Gg~TIVD~T~~~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p~~~~~~------~i~~~ae~~v~ei~~Gi~gT 130 (316)
T COG1735 57 LMARGGQTIVDATNIGIGRDVLKMRRVAEATGLNIVAATGFYKAAFHPEYFALR------PIEELAEFVVKEIEEGIAGT 130 (316)
T ss_pred HHHcCCCeEeeCCccccCcCHHHHHHHHHHhCCcEEEeccccccccchhHHhhC------CHHHHHHHHHHHHHhcccCC
Confidence 334799888765431 13344455555554 4788888875 4222211 12344444322 1
Q ss_pred CCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc--hHHHHHHHHHhCCCCCCcEEE-Ee
Q psy4448 101 GKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA--KSDFIEIMKEYAPKLPRKGVI-HS 173 (487)
Q Consensus 101 ~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a--~~d~l~iLk~~~~~~~~~~v~-H~ 173 (487)
.-+.=.|||+|--- ......+++|++....+++.+.|+++|+-.. .-+.+++|.+.+..+ .++++ ||
T Consensus 131 ~ikAGiIk~~~~~~-----~iTp~Eek~lrAaA~A~~~Tg~Pi~tHt~~gt~g~eq~~il~~egvdl-~~v~igH~ 200 (316)
T COG1735 131 GIKAGIIKEAGGSP-----AITPLEEKSLRAAARAHKETGAPISTHTPAGTMGLEQLRILAEEGVDL-RKVSIGHM 200 (316)
T ss_pred ccccceeeeccCcc-----cCCHHHHHHHHHHHHHhhhcCCCeEEeccchhhhHHHHHHHHHcCCCh-hHeeEecc
Confidence 11445677777521 1346789999999999999999999999765 347889999888654 45555 55
No 60
>PRK09060 dihydroorotase; Validated
Probab=96.83 E-value=0.63 Score=50.06 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=35.1
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC------CHHhHHHHHHHHhc
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT------NVEDSISSLKLAQS 64 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~------~~~~~~~~~~la~~ 64 (487)
+||+|+|+..+.+ ...+++....+.+...||+.++.+.. +.+.+...++.+++
T Consensus 58 ~ID~HvH~~~~~~---------~~~e~~~t~~~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~a~~ 116 (444)
T PRK09060 58 VIDSQVHFREPGL---------EHKEDLETGSRAAVLGGVTAVFEMPNTNPLTTTAEALADKLARARH 116 (444)
T ss_pred EEeccccccCCCC---------CccchHHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhcc
Confidence 8999999875321 11457777778888999998887642 34455555555543
No 61
>PRK09236 dihydroorotase; Reviewed
Probab=96.76 E-value=1.1 Score=48.22 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCCC
Q psy4448 374 IVQILEIVAAVRGVEREKLGPIIHQNTLRLFFPH 407 (487)
Q Consensus 374 l~~v~~~iA~ikg~~~~~va~~~~~N~~rlf~~~ 407 (487)
+..+++.+. -.+++++++.+.++.|..++|++.
T Consensus 336 l~~l~~~v~-~~~~~~~~~~~~~t~~pA~~lgl~ 368 (444)
T PRK09236 336 LPALLELVH-EGKLSLEKVVEKTSHAPAILFDIK 368 (444)
T ss_pred HHHHHHHHH-hcCCCHHHHHHHHHHhHHHhcCCC
Confidence 344444332 246999999999999999999984
No 62
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=96.70 E-value=0.2 Score=53.84 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHh-----------CCCCCCcEEEEecCCCHHHHHHHHcCc
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEY-----------APKLPRKGVIHSFDGTPFQAVDSLKTK 188 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~-----------~~~~~~~~v~H~FsG~~~~a~~~l~~~ 188 (487)
.+.|+..+++|.++++|+.+|+-...++....++.+ +...+.-.+.||..-+.+.++.+.+.+
T Consensus 213 ~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~l~~~~~~~la~~g 286 (451)
T PRK08203 213 RELMRESAALARRLGVRLHTHLAETLDEEAFCLERFGMRPVDYLEDLGWLGPDVWLAHCVHLDDAEIARLARTG 286 (451)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEeCCCHHHHHHHHhcC
Confidence 456888999999999999999977665544444333 211122357899999999999988874
No 63
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=96.65 E-value=0.32 Score=52.02 Aligned_cols=128 Identities=16% Similarity=0.110 Sum_probs=64.2
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCCH--HhHHHHHHHHhcC--CCeEEEeecCCCC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNV--EDSISSLKLAQSD--ERLYSTVGCHPTR 78 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~~--~~~~~~~~la~~~--~~v~~avGiHP~~ 78 (487)
+||+|+|+...-. + ....+++....+.+-..||+.++.+.... .+....++...+. .....-+|+|...
T Consensus 53 lID~H~H~~~~~~-----~--~~~~e~~~~~s~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (454)
T TIGR02033 53 GIDVHTHLEMPFG-----G--TVTADDFFTGTKAAAAGGTTTIIDFALPHKGESLTEALETWHEKAEGKSVIDYGFHMMI 125 (454)
T ss_pred EecceeccCcccC-----C--CCCcchHHHHHHHHHhCCCCEEEeCcCCCCCCCHHHHHHHHHHHhccCceEEEEEEecc
Confidence 8999999975310 0 01134454445566789999988765321 2333333322211 2234455666421
Q ss_pred CCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEec
Q psy4448 79 CSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCR 148 (487)
Q Consensus 79 ~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r 148 (487)
. .. ..+.++.+..++.+ ..+..|.-. +.+.. . ...-.+.+.+.++.|+++++||.+|+.
T Consensus 126 ~-~~---~~~~~~~~~~~~~~--~g~~~ik~~-~~~~~-~---~~~~~~~l~~~~~~a~~~~~~v~~H~E 184 (454)
T TIGR02033 126 T-HW---NDEVLEEHIPELVE--EGITSFKVF-MAYKN-L---LMVDDEELFEILKRAKELGALLQVHAE 184 (454)
T ss_pred c-CC---cHHHHHHHHHHHHh--cCCcEEEEE-eecCC-C---CCCCHHHHHHHHHHHHhCCCeEEEEcC
Confidence 1 11 11223343333333 123333211 22111 0 011235688888999999999999974
No 64
>PRK08417 dihydroorotase; Provisional
Probab=96.64 E-value=0.34 Score=51.14 Aligned_cols=115 Identities=12% Similarity=0.265 Sum_probs=68.0
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC-CH-----HhHHHHHHHHhcCCC-eEEEeecC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT-NV-----EDSISSLKLAQSDER-LYSTVGCH 75 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~-~~-----~~~~~~~~la~~~~~-v~~avGiH 75 (487)
+||.|+|+..+.+. .++++...+.|...||+.++.+.. .| +.++...+.++..+. ++...+
T Consensus 32 ~ID~HvH~~~~~~~----------~e~~~t~s~aA~aGGvTtv~dmpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 99 (386)
T PRK08417 32 LVDLNVSLKNDSLS----------SKNLKSLENECLKGGVGSIVLYPDSTPAIDNEIALELINSAQRELPMQIFPSIR-- 99 (386)
T ss_pred eeEEeeeeCCCCcC----------hhhHHHHHHHHHcCCcEEEEeCCCCCCCCCCHHHHHHHHHHhhccCCcEEEEEE--
Confidence 89999999764331 357777778888899998888753 23 345554554443222 222211
Q ss_pred CCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc
Q psy4448 76 PTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA 150 (487)
Q Consensus 76 P~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a 150 (487)
+... .+.++++.++.+. .+.++ -+ ++ . .-...|.+.++.|+++++||++|+.+.
T Consensus 100 ---~~~~----~~~~~~i~~l~~~---Gv~~~-k~--~~-~-------~~~~~l~~~~~~a~~~g~~V~~HaEd~ 153 (386)
T PRK08417 100 ---ALDE----DGKLSNIATLLKK---GAKAL-EL--SS-D-------LDANLLKVIAQYAKMLDVPIFCRCEDS 153 (386)
T ss_pred ---EECC----CccHHHHHHHHHC---CCEEE-EC--CC-C-------CCHHHHHHHHHHHHHcCCEEEEeCCCH
Confidence 1111 1225666666543 34443 11 11 1 123467778899999999999999883
No 65
>PRK09061 D-glutamate deacylase; Validated
Probab=96.60 E-value=0.024 Score=62.12 Aligned_cols=76 Identities=17% Similarity=0.306 Sum_probs=48.4
Q ss_pred hhHHHHHHHHH---hcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCch-----------HH
Q psy4448 88 GYLQSLDKIIK---EGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAK-----------SD 153 (487)
Q Consensus 88 ~~l~~L~~ll~---~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~-----------~d 153 (487)
+.+++|.+++. + ..+.+|+ +|++|.. . .-...+.+.++.|+++|.|+.+|+++.. ++
T Consensus 166 ~el~~m~~ll~~al~--~Ga~gis-~~~~y~p-~-----~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~~~~e~~av~~ 236 (509)
T PRK09061 166 AELAEILELLEQGLD--EGALGIG-IGAGYAP-G-----TGHKEYLELARLAARAGVPTYTHVRYLSNVDPRSSVDAYQE 236 (509)
T ss_pred HHHHHHHHHHHHHHH--CCCCEEe-cCCccCC-C-----CCHHHHHHHHHHHHHcCCEEEEEecCcccCCchhHHHHHHH
Confidence 34566666665 2 2466665 4677643 1 1344588888999999999999999742 34
Q ss_pred HHHHHHHhCCCCCCcEEEEecC
Q psy4448 154 FIEIMKEYAPKLPRKGVIHSFD 175 (487)
Q Consensus 154 ~l~iLk~~~~~~~~~~v~H~Fs 175 (487)
++++.++.+.+ --+.|.-+
T Consensus 237 ~i~lA~~~G~r---v~IsHlss 255 (509)
T PRK09061 237 LIAAAAETGAH---MHICHVNS 255 (509)
T ss_pred HHHHHHHhCCC---EEEEeecc
Confidence 55666655432 23557765
No 66
>PRK09059 dihydroorotase; Validated
Probab=96.56 E-value=1.5 Score=47.13 Aligned_cols=121 Identities=12% Similarity=0.112 Sum_probs=73.2
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC------CHHhHHHHHHHHhcC--CCeEEEeec
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT------NVEDSISSLKLAQSD--ERLYSTVGC 74 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~------~~~~~~~~~~la~~~--~~v~~avGi 74 (487)
+||.|+|+..+-. ....+++...+.+...||+.++.+.. +.+.+....+.+++. -+++...++
T Consensus 62 ~ID~HvH~~~~~~---------~~~e~~~~~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~ 132 (429)
T PRK09059 62 LVDARVFVGEPGA---------EHRETIASASRAAAAGGVTSIIMMPDTDPVIDDVALVEFVKRTARDTAIVNIHPAAAI 132 (429)
T ss_pred EEecccccCCCCc---------hhhhhHHHHHHHHHhCCcEEEEeccCCCCCCCCHHHHHHHHHHhcccCcccEEEEeEE
Confidence 8999999975311 11356666777788889998887643 234555556665543 345666666
Q ss_pred CCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCch
Q psy4448 75 HPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAK 151 (487)
Q Consensus 75 HP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~ 151 (487)
.++... +.++++..+... .+.++-.-| .. ..+ ..++.+.++.++++++||++|+.+..
T Consensus 133 ~~~~~~-------~~l~e~~~l~~~---Gv~~f~~~~---~~--~~~----~~~l~~~~~~~~~~~~~v~~H~E~~~ 190 (429)
T PRK09059 133 TKGLAG-------EEMTEFGLLRAA---GAVAFTDGR---RS--VAN----TQVMRRALTYARDFDAVIVHETRDPD 190 (429)
T ss_pred ecCCCC-------cchHHHHHHHhc---CcEEEecCC---cc--cCC----HHHHHHHHHHHHhcCCEEEEecCChh
Confidence 654321 225566665543 455553111 11 111 23566677889999999999997743
No 67
>PRK10027 cryptic adenine deaminase; Provisional
Probab=96.44 E-value=0.73 Score=51.46 Aligned_cols=128 Identities=19% Similarity=0.188 Sum_probs=73.1
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEE------CCCHHhHHHHHHHHhcCCC-eEEEee-c
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVT------GTNVEDSISSLKLAQSDER-LYSTVG-C 74 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v------~~~~~~~~~~~~la~~~~~-v~~avG-i 74 (487)
+||+|+|+.+... ..++....+-..|++.++.. -.+.+..+..++.++..|. +++.+- .
T Consensus 86 lIDaHvHiess~~-------------~p~~~a~aal~~G~TtVv~dPhei~nv~g~~gi~~~l~~a~~~p~~~~~~~ps~ 152 (588)
T PRK10027 86 FIDAHLHIESSMM-------------TPVTFETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSSC 152 (588)
T ss_pred eEeccccCCcccC-------------CHhHHHHHHHhCceEEEEcCCCCcccCCCHHHHHHHHHHhhhCCCeeEEeeccc
Confidence 8999999986422 34455556677898877662 1245666667777666553 443332 1
Q ss_pred CCCCCCCc-CCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchHH
Q psy4448 75 HPTRCSEF-ENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSD 153 (487)
Q Consensus 75 HP~~~~~~-~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d 153 (487)
-|-- ..+ +....-..+.+++++.. ++++++||+ +||..+- ....+++.+.. .| .++++-=|+....+.
T Consensus 153 vpa~-~~~Et~Ga~~~~~~~~~~l~~--~~v~glgEv-Mn~~~V~----~~d~~~~~ki~-~~--~~~~idGH~p~l~g~ 221 (588)
T PRK10027 153 VPAL-EGCDVNGASFTLEQMLAWRDH--PQVTGLAEM-MDYPGVI----SGQNALLDKLD-AF--RHLTLDGHCPGLGGK 221 (588)
T ss_pred CcCC-cccccCCCcCCHHHHHHHhcC--CCceeEEec-cCccccc----cCCHHHHHHHH-Hh--CCCceECCCCCCChH
Confidence 2221 101 00011225678888876 799999996 5553321 22344555554 23 677777777665443
Q ss_pred H
Q psy4448 154 F 154 (487)
Q Consensus 154 ~ 154 (487)
-
T Consensus 222 ~ 222 (588)
T PRK10027 222 E 222 (588)
T ss_pred H
Confidence 3
No 68
>PRK07583 cytosine deaminase-like protein; Validated
Probab=96.41 E-value=0.054 Score=58.04 Aligned_cols=126 Identities=14% Similarity=0.065 Sum_probs=67.0
Q ss_pred HHHHHHHhcCCCE---EEEE-CC-CHHhHHHHHHHHhcCCC-e----EEEeecCCCCCCCcCCCchhhHHHHHHHHHhcC
Q psy4448 32 HVLNRAWNAGLEK---IIVT-GT-NVEDSISSLKLAQSDER-L----YSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGG 101 (487)
Q Consensus 32 ~vl~ra~~~GV~~---ii~v-~~-~~~~~~~~~~la~~~~~-v----~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~ 101 (487)
..++.|...|++. .+.+ +. .+..++.+.++.+.++. + ...++.|+... ...++|.+.+.+.
T Consensus 126 ~~~~~a~~~Gtt~vRt~vd~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~p~~~~~~--------~~~~eL~~~v~~~- 196 (438)
T PRK07583 126 FGLRCAYAHGTSAIRTHLDSFAPQAAISWEVFAELREAWAGRIALQAVSLVPLDAYLT--------DAGERLADLVAEA- 196 (438)
T ss_pred HHHHHHHHhChhhEEeeeccCCCCcccHHHHHHHHHHHhhccCeEEEEEecChhhccC--------chHHHHHHHHHHc-
Confidence 3445555667763 2322 11 14456556666666653 2 22344554322 1225666666542
Q ss_pred CCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCch-------HHHHHHHHHhCCCCCCcEEEEec
Q psy4448 102 KKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAK-------SDFIEIMKEYAPKLPRKGVIHSF 174 (487)
Q Consensus 102 ~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~-------~d~l~iLk~~~~~~~~~~v~H~F 174 (487)
..+ +| |.+|.. + . -.+.+...+++|+++++||.+|+.... ..+.+.+.+.+... .-.+-||+
T Consensus 197 ~gv--~g--~~~~~~--~-~---~d~~l~~i~~lA~~~G~~v~vH~~E~~~~~~~~l~~~~~~~~~~G~~~-~v~i~H~~ 265 (438)
T PRK07583 197 GGL--LG--GVTYMN--P-D---LDAQLDRLFRLARERGLDLDLHVDETGDPASRTLKAVAEAALRNGFEG-KVTCGHCC 265 (438)
T ss_pred CCE--Ee--CCCCCC--C-C---HHHHHHHHHHHHHHhCCCcEEeECCCCCchHHHHHHHHHHHHHhCCCC-CEEEEecc
Confidence 223 33 456542 1 1 235688899999999999999995431 12333333443322 23577998
Q ss_pred CCC
Q psy4448 175 DGT 177 (487)
Q Consensus 175 sG~ 177 (487)
.-+
T Consensus 266 ~l~ 268 (438)
T PRK07583 266 SLA 268 (438)
T ss_pred chh
Confidence 754
No 69
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=96.35 E-value=0.35 Score=53.53 Aligned_cols=158 Identities=14% Similarity=0.105 Sum_probs=84.9
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCCH-----------HhHH--HHHHHHhcCCCeE
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNV-----------EDSI--SSLKLAQSDERLY 69 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~~-----------~~~~--~~~~la~~~~~v~ 69 (487)
+||+|+|+..+.+ .+.|...||+.++..++.+ ..|. +..+.++..+
T Consensus 137 ~ID~HVH~~~Pg~------------------~~aALagGVTTvi~~G~gP~~~t~~~t~t~g~~~l~~~~~aa~~~p--- 195 (573)
T PRK13206 137 AIDCHVHFICPQI------------------VDEALAAGITTLIGGGTGPAEGSKATTVTPGAWHLARMLEALDGWP--- 195 (573)
T ss_pred EEeeeeccCCchH------------------HHHHHcCCeEEEEcCCCCccccCcccccccchhHHHHHHHHhhcCc---
Confidence 7999999875421 2566788999888643332 2222 4444333322
Q ss_pred EEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC
Q psy4448 70 STVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN 149 (487)
Q Consensus 70 ~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~ 149 (487)
.-+|+|-. ... ...+.|.++++. .+.++. +..||. .--..+.+.++.|.+++.||.+|++.
T Consensus 196 vn~g~~g~-g~~------~~~~~L~el~~a---GA~GfK-i~~d~g--------~t~~~i~~aL~~A~~~gv~V~iHadt 256 (573)
T PRK13206 196 VNVALLGK-GNT------VSAEALWEQLRG---GAGGFK-LHEDWG--------STPAAIDACLRVADAAGVQVALHSDT 256 (573)
T ss_pred eeEEEecC-cCc------CCHHHHHHHHHC---CCcEEe-ecCccC--------CCHHHHHHHHHHHHHhCCEEEEECCC
Confidence 22333321 111 113467777654 566765 333431 12347788889999999999999997
Q ss_pred chH-HHHHH-HHHhCCCCCCcEEEEecCCCHHHHHHHHcCccchhHhhhcCCCceeeccCCCCC
Q psy4448 150 AKS-DFIEI-MKEYAPKLPRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWC 211 (487)
Q Consensus 150 a~~-d~l~i-Lk~~~~~~~~~~v~H~FsG~~~~a~~~l~~~~g~e~v~~iP~driLlETD~P~l 211 (487)
..+ -+.|. +.....+ .+.+-+.+|. ..+-.-++++.+...++|--|--|-.
T Consensus 257 lne~g~~E~t~aa~~gr---~iH~~H~ega--------ggghapd~~~~~~~~n~lp~stnpt~ 309 (573)
T PRK13206 257 LNEAGFVEDTLAAIAGR---SIHAYHTEGA--------GGGHAPDIITVASHPNVLPSSTNPTR 309 (573)
T ss_pred ccccchhhHHHHHhcCC---eEEEEeccCC--------CcCcccHHHHhcCCCCCcCCCCCCCC
Confidence 432 12222 2222221 2322223332 01111256666777777776666654
No 70
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=96.35 E-value=0.67 Score=48.19 Aligned_cols=120 Identities=17% Similarity=0.109 Sum_probs=67.4
Q ss_pred EEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC------CHHhHHHHHH-HHhcCC---CeEEEee
Q psy4448 4 IDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT------NVEDSISSLK-LAQSDE---RLYSTVG 73 (487)
Q Consensus 4 iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~------~~~~~~~~~~-la~~~~---~v~~avG 73 (487)
-|.||||-... -++.++ -.-..||+.++.+.. +.+.+....+ .++.++ .+....|
T Consensus 8 ~~~~~~~~~~~--------------~~~~~~-~~~~~~vt~vv~mPnt~P~~~~~e~~~~~~~~~~~~s~~~vDf~~~~~ 72 (341)
T TIGR00856 8 DDWHLHLRDGA--------------MLKAVL-PYTSEIFSRAIVMPNLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMT 72 (341)
T ss_pred cceeeeccCch--------------HHHHHH-HHHHhhcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcceEEEEE
Confidence 48999997632 233333 344557999888743 2333333333 344444 4667788
Q ss_pred cCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHH-HHHHHHHHHHhhhCCCCEEEEecCc
Q psy4448 74 CHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQ-LKYFRKQLDLSVTHKLPLFLHCRNA 150 (487)
Q Consensus 74 iHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q-~~vF~~qL~LA~el~lPViIH~r~a 150 (487)
+||+.. ..+++++++... ..+.++ -+-..+.... ...... ...+.+.++.|+++|+||++|+.+.
T Consensus 73 v~~~~~--------~~~~Ei~~l~~~--~Gv~g~-Klf~~~~~~~-~~~~v~dd~~l~~~~e~~~e~g~~v~vHaEd~ 138 (341)
T TIGR00856 73 LYLTDS--------LTPEELERAKNE--GVVRAV-KLYPAGATTN-SSHGVTDIDAIMPVLEAMEKIGLPLLLHGEVT 138 (341)
T ss_pred EECCCC--------CCHHHHHHHHHc--CCeEEE-EEccCCcccC-CCcCCCCHHHHHHHHHHHHHcCCeEEEeecCC
Confidence 998532 124667776654 245555 2221110000 000011 1457777899999999999999875
No 71
>PRK06846 putative deaminase; Validated
Probab=96.32 E-value=0.11 Score=55.00 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCch-------HHHHHHHHHhCC
Q psy4448 91 QSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAK-------SDFIEIMKEYAP 163 (487)
Q Consensus 91 ~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~-------~d~l~iLk~~~~ 163 (487)
+.|++.++. ....+| |+..+..+ ....+.|+...++|+++++|+.+|..... +.+++++.+.+.
T Consensus 179 ~lL~~al~~---Ga~~i~--gl~p~~~~----~~~~~~l~~~~~lA~~~g~~v~~Hv~e~~~~~~~~~~~~~~~~~~~gl 249 (410)
T PRK06846 179 PLMREAMKM---GAHLVG--GVDPASVD----GAIEKSLDTMFQIAVDFNKGVDIHLHDTGPLGVATIKYLVETTEEAQW 249 (410)
T ss_pred HHHHHHHHc---CCCEEe--CCCCccCC----cCHHHHHHHHHHHHHHhCCCcEEEECCCCChhHHHHHHHHHHHHHhCC
Confidence 456776665 234666 66432211 22358899999999999999999988643 355777777653
Q ss_pred CCCCcEEEEecC---CCHHHHHHHHc
Q psy4448 164 KLPRKGVIHSFD---GTPFQAVDSLK 186 (487)
Q Consensus 164 ~~~~~~v~H~Fs---G~~~~a~~~l~ 186 (487)
.. .-.+.||.. .+.+.+..+++
T Consensus 250 ~~-~v~~~H~~~l~~~~~~e~~~li~ 274 (410)
T PRK06846 250 KG-KVTISHAFALGDLNEEEVEELAE 274 (410)
T ss_pred CC-CEEEEecchhhcCCHHHHHHHHH
Confidence 22 245779875 35666665443
No 72
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=96.28 E-value=0.49 Score=49.37 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=22.6
Q ss_pred HhhCCCHHHHHHHHHHHHHHhcCCCC
Q psy4448 383 AVRGVEREKLGPIIHQNTLRLFFPHE 408 (487)
Q Consensus 383 ~ikg~~~~~va~~~~~N~~rlf~~~~ 408 (487)
.-.|++.+++.+.++.|..+++++..
T Consensus 296 ~~~gl~~~~al~~~T~n~A~~lg~~~ 321 (359)
T cd01309 296 VKYGLSYEEALKAITINPAKILGIED 321 (359)
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 34689999999999999999999863
No 73
>PRK08204 hypothetical protein; Provisional
Probab=96.28 E-value=0.11 Score=55.60 Aligned_cols=61 Identities=16% Similarity=0.113 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhhCCCCEEEEecC----chHHHHHHHHHhCCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 127 KYFRKQLDLSVTHKLPLFLHCRN----AKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 127 ~vF~~qL~LA~el~lPViIH~r~----a~~d~l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
+.++..+++|.++++||.+|+-. ...+.++.+.+.+...+.-.+.||+..+.++++.+.+.
T Consensus 201 e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~l~~~g~~~~~~~i~H~~~~~~~~~~~la~~ 265 (449)
T PRK08204 201 EVARADFRLARELGLPISMHQGFGPWGATPRGVEQLHDAGLLGPDLNLVHGNDLSDDELKLLADS 265 (449)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcCCCcccCCCHHHHHHHCCCCCCCeEEEecCCCCHHHHHHHHHc
Confidence 56778889999999999999942 12345667766653222236889999999999998887
No 74
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=96.28 E-value=0.1 Score=54.49 Aligned_cols=62 Identities=18% Similarity=0.123 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCchHHHHHH-----------HHHhCCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEI-----------MKEYAPKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a~~d~l~i-----------Lk~~~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
.+.|...+++|+++++||.+|+-......-.+ +.+.+...+...+.|+..-+.+.++.+.+.
T Consensus 193 ~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~l~~~~~~~l~~~ 265 (411)
T cd01298 193 DELLREVAELAREYGVPLHIHLAETEDEVEESLEKYGKRPVEYLEELGLLGPDVVLAHCVWLTDEEIELLAET 265 (411)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCCCHHHHHHHHHc
Confidence 46789999999999999999985543322222 222221111236889999998888888777
No 75
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=96.26 E-value=0.028 Score=61.77 Aligned_cols=108 Identities=14% Similarity=0.119 Sum_probs=69.8
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCCH-------------HhHHHHHHHHhcCCCeE
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNV-------------EDSISSLKLAQSDERLY 69 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~~-------------~~~~~~~~la~~~~~v~ 69 (487)
+||+|+|+..+.+ .+.|...||+.++..|+.| ..+.+.++.++..+-
T Consensus 131 ~ID~HvH~~~P~~------------------~~aAlagGVTTvI~~G~gP~~gtnatp~t~g~~~l~~ml~aa~~~pi-- 190 (567)
T cd00375 131 GIDTHVHFICPQQ------------------IEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAADGLPV-- 190 (567)
T ss_pred eEECccCCCCccH------------------HHHHHcCCCcEEEcCCcCcccccCCCCCCCCHHHHHHHHHHhhcCCc--
Confidence 7999999876432 2567788999998854443 556666666665552
Q ss_pred EEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC
Q psy4448 70 STVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN 149 (487)
Q Consensus 70 ~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~ 149 (487)
-+|+|-.-. ...++.|.++++. .+++++ +..||.. =-..+.+.|+.|.+++.+|.+|++.
T Consensus 191 -n~g~~gkg~-------~~~l~eL~e~~~a---GA~GfK-~~eD~g~--------t~~~i~~aL~~A~~~dv~VaiHadt 250 (567)
T cd00375 191 -NIGFLGKGN-------GSSPDALAEQIEA---GACGLK-LHEDWGA--------TPAAIDTCLSVADEYDVQVAIHTDT 250 (567)
T ss_pred -eEEEEecCc-------cccHHHHHHHHHc---CCEEEE-ecCCCCC--------CHHHHHHHHHHHHhhCCEEEEECCC
Confidence 233331111 1235677777654 466664 4445421 2347788899999999999999997
Q ss_pred c
Q psy4448 150 A 150 (487)
Q Consensus 150 a 150 (487)
.
T Consensus 251 l 251 (567)
T cd00375 251 L 251 (567)
T ss_pred C
Confidence 3
No 76
>TIGR01792 urease_alph urease, alpha subunit. This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.
Probab=96.26 E-value=0.026 Score=62.22 Aligned_cols=157 Identities=12% Similarity=0.118 Sum_probs=89.5
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCC-----------HHhH--HHHHHHHhcCCCeE
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTN-----------VEDS--ISSLKLAQSDERLY 69 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~-----------~~~~--~~~~~la~~~~~v~ 69 (487)
+||+|+|+..+.+ ...|...||+.++..|+. ...| ...++.++..+ +
T Consensus 130 lIDtHvH~~~P~~------------------~~aAl~gGVTTmI~~Gtgp~~~t~pTt~t~~~~~~~~~l~aa~~~~-i- 189 (567)
T TIGR01792 130 GIDTHVHYISPQQ------------------VQAALDNGITTLIGGGTGPADGTNATTCTPGPWYLHRMLQAADGLP-I- 189 (567)
T ss_pred eEEeecCCCCccH------------------HHHHHhCceEEEecCCCccccCCCCcccccchhhHHHHHHHhccCC-c-
Confidence 7999999865421 356678899988875441 2223 22344444433 1
Q ss_pred EEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC
Q psy4448 70 STVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN 149 (487)
Q Consensus 70 ~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~ 149 (487)
-+|+++.-.. ...+.|++++.. .+.+++ ++.||. .-.+++.+.+++|.+++.||.+|+ +
T Consensus 190 -n~g~~g~g~~-------~~~~~L~e~i~a---Ga~gfK-~h~~y~--------~s~e~L~~al~~A~e~gv~V~iH~-E 248 (567)
T TIGR01792 190 -NFGFTGKGSG-------SGPAALIEQIEA---GACGLK-VHEDWG--------ATPAAIDNALSVADEYDVQVAVHT-D 248 (567)
T ss_pred -cEEEEeCCcc-------chHHHHHHHHHc---CCcEEE-eCCCCC--------CCHHHHHHHHHHHHHcCCEEEEeC-C
Confidence 2555542111 124456666543 355665 444442 234578889999999999999999 5
Q ss_pred chHH---HHHHHHHhCCCCCCcEEEEecCCCHHHHHHHHcCccchhHhhhcCCCceeeccCCCCC
Q psy4448 150 AKSD---FIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWC 211 (487)
Q Consensus 150 a~~d---~l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~~~g~e~v~~iP~driLlETD~P~l 211 (487)
...+ +-..++.++.+. --++|.-+-+...+ -++++.+...++|--|-.|-+
T Consensus 249 T~~E~g~ve~t~~a~g~rp--Ih~~H~~G~g~gha---------pdi~~~~~~~~~~~~st~pt~ 302 (567)
T TIGR01792 249 TLNESGFVEDTIAAFKGRT--IHTYHTEGAGGGHA---------PDIIVVVGYNNILPSSTNPTL 302 (567)
T ss_pred CcccchHHHHHHHHHCCCc--chhHhhcCCCCCcH---------HHHHHHcCCCCcccCCCCCCC
Confidence 5555 555666665431 12334322221111 255666777777777766655
No 77
>PRK06380 metal-dependent hydrolase; Provisional
Probab=96.24 E-value=0.3 Score=51.83 Aligned_cols=61 Identities=10% Similarity=0.075 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHhCCC-----------CCCcEEEEecCCCHHHHHHHHcC
Q psy4448 127 KYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPK-----------LPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 127 ~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~~~~-----------~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
+.++...++|+++++|+.+|+....+++....++++.. .+...+.||..-+.+.++.+.+.
T Consensus 186 e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~ie~~~~~g~l~~~~~~~H~~~l~~~d~~~la~~ 257 (418)
T PRK06380 186 ETYLKAKEIAEKYDTIMHMHLSETRKEVYDHVKRTGERPVEHLEKIGFLNSKLIAAHCVWATYHEIKLLSKN 257 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHhCCCHHHHHHHCCCCCCCeEEEEeecCCHHHHHHHHHc
Confidence 57999999999999999999998876666555544321 12236789988888888888777
No 78
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=96.23 E-value=0.12 Score=55.15 Aligned_cols=62 Identities=11% Similarity=-0.016 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHh-----------CCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEY-----------APKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~-----------~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
.+.+++.+++|.++++|+.+|+.....++-.+.+.+ +...+.-.+.||..-+.+.++.+.+.
T Consensus 198 ~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~~~~~~~l~H~~~~~~~~~~~~~~~ 270 (445)
T PRK07228 198 EELLRGVRDLADEYGVRIHTHASENRGEIETVEEETGMRNIHYLDEVGLTGEDLILAHCVWLDEEEREILAET 270 (445)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHCCCCCCCcEEEEEecCCHHHHHHHHHc
Confidence 456888999999999999999976544333232222 22112246889998888888888777
No 79
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=96.20 E-value=0.22 Score=52.27 Aligned_cols=35 Identities=14% Similarity=0.065 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCCC
Q psy4448 373 NIVQILEIVAAVRGVEREKLGPIIHQNTLRLFFPH 407 (487)
Q Consensus 373 ~l~~v~~~iA~ikg~~~~~va~~~~~N~~rlf~~~ 407 (487)
.+...+..+.+.-+++.+++.+..+.|..+++++.
T Consensus 310 ~l~~~~~~l~~~~~l~~~~al~~aT~npA~~lg~~ 344 (374)
T cd00854 310 TMDQAVRNMVKWGGCPLEEAVRMASLNPAKLLGLD 344 (374)
T ss_pred hHHHHHHHHHHhhCCCHHHHHHHHhHHHHHHcCCC
Confidence 46666666666667999999999999999999987
No 80
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=96.16 E-value=0.27 Score=52.59 Aligned_cols=143 Identities=11% Similarity=0.095 Sum_probs=77.1
Q ss_pred HHHHhcCCCEEEEECC-CHHhHHHHHHHHhcC-CCeEEEeecC----CCCCCCcCCCchhhHHHHHHHHHhcC--CCEEE
Q psy4448 35 NRAWNAGLEKIIVTGT-NVEDSISSLKLAQSD-ERLYSTVGCH----PTRCSEFENDPEGYLQSLDKIIKEGG--KKVVA 106 (487)
Q Consensus 35 ~ra~~~GV~~ii~v~~-~~~~~~~~~~la~~~-~~v~~avGiH----P~~~~~~~~~~~~~l~~L~~ll~~~~--~~vva 106 (487)
.++-..|++.+...+. .+..++.+++.+... .+++.+.+.. |..... ...+.++..+++++... ...+.
T Consensus 118 ~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~v~ 194 (429)
T cd01303 118 DELLRNGTTTACYFATIHPESTEALFEEAAKRGQRAIAGKVCMDRNAPEYYRD---TAESSYRDTKRLIERWHGKSGRVK 194 (429)
T ss_pred HHHHhCCceEEEeecccChhHHHHHHHHHHHhCCeEEEeeeeecCCCCccccc---CHHHHHHHHHHHHHHHhCcCCceE
Confidence 3456789987775543 244555555555443 3444444332 321111 11122333333333210 11222
Q ss_pred EEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCC-CCEEEEecCchHHHHHHHHHhC-------------CCCCCcEEEE
Q psy4448 107 FGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHK-LPLFLHCRNAKSDFIEIMKEYA-------------PKLPRKGVIH 172 (487)
Q Consensus 107 IGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~-lPViIH~r~a~~d~l~iLk~~~-------------~~~~~~~v~H 172 (487)
+| +|...-+ . .+ .+.+++..++|++++ +|+.+|+-....+...+.+.++ .-.+.-.+.|
T Consensus 195 ~~-~~p~~~~-~-~s----~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g~~~~p~~~l~~~G~l~~~~~l~H 267 (429)
T cd01303 195 PA-ITPRFAP-S-CS----EELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFPGARDYLDVYDKYGLLTEKTVLAH 267 (429)
T ss_pred EE-EecCcCC-c-CC----HHHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcCCCCCHHHHHHHCCCCCCCcEEEe
Confidence 22 3333211 1 11 345889999999999 9999999876665554444432 1112235889
Q ss_pred ecCCCHHHHHHHHcC
Q psy4448 173 SFDGTPFQAVDSLKT 187 (487)
Q Consensus 173 ~FsG~~~~a~~~l~~ 187 (487)
|..-+.++++.+.+.
T Consensus 268 ~~~l~~~~~~~l~~~ 282 (429)
T cd01303 268 CVHLSEEEFNLLKER 282 (429)
T ss_pred CCCCCHHHHHHHHHc
Confidence 999999898888877
No 81
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=96.12 E-value=0.12 Score=55.15 Aligned_cols=62 Identities=8% Similarity=-0.042 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHh-----------CCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEY-----------APKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~-----------~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
.+.+++..++|+++++|+.+|+-....++-.+.+.+ +.-.+...+.||..-+.+.++.+.+.
T Consensus 188 ~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~l~~~~l~~la~~ 260 (424)
T PRK08393 188 LALLKWVREKAREWNKLITIHLSETMDEIKQIREKYGKSPVVLLDEIGFLNEDVIAAHGVWLSSRDIRILASA 260 (424)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCcCHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHhc
Confidence 468889999999999999999977665544444433 22122235789999899999888877
No 82
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=96.06 E-value=0.11 Score=51.58 Aligned_cols=55 Identities=15% Similarity=0.095 Sum_probs=42.3
Q ss_pred HHHHHHHhhhCCCCEEEEecCchH----HHHHHHHHhCCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 129 FRKQLDLSVTHKLPLFLHCRNAKS----DFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 129 F~~qL~LA~el~lPViIH~r~a~~----d~l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
|++.+++|+++++||.+|+-.... ..++.+.+.+. ..+.||..-+.++++.+.+.
T Consensus 127 l~~~~~~A~~~g~~v~~H~~e~~~~~g~~~i~~~~~~~~----~~i~H~~~l~~~~~~~la~~ 185 (263)
T cd01305 127 LEDILELLRRRGKLFAIHASETRESVGMTDIERALDLEP----DLLVHGTHLTDEDLELVREN 185 (263)
T ss_pred HHHHHHHHHHCCCeeEEecCCCCCCCCchhHHHHHhCCC----CEEEEcCCCCHHHHHHHHHc
Confidence 999999999999999999976533 22344434422 46899999999998888877
No 83
>PRK13985 ureB urease subunit beta; Provisional
Probab=96.03 E-value=0.038 Score=60.61 Aligned_cols=154 Identities=16% Similarity=0.172 Sum_probs=90.3
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCCH-----------HhH--HHHHHHHhcCCCeE
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNV-----------EDS--ISSLKLAQSDERLY 69 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~~-----------~~~--~~~~~la~~~~~v~ 69 (487)
+||+|+|+..+.. ...|...||+.++..|+.| ..| ++.++.++..+
T Consensus 131 ~ID~HvH~~~P~~------------------~~~AlagGVTTvI~~G~gP~~~T~p~~~tpg~~~i~~ml~~a~~~p--- 189 (568)
T PRK13985 131 GIDTHIHFISPQQ------------------IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYS--- 189 (568)
T ss_pred EEEeeCCCCCccH------------------HHHHhcCceEEEEccCcCCCCCCCCcCCCCcHHHHHHHHHHhhccC---
Confidence 7999999875421 1357788999888754433 232 56666666555
Q ss_pred EEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC
Q psy4448 70 STVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN 149 (487)
Q Consensus 70 ~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~ 149 (487)
.-+|+|-.- . ....+.|++++.. .+++++ ++.||.. + -..+.+.|+.|.+++.||.+|++.
T Consensus 190 vn~gf~gkG---~----~~~l~eL~el~~a---GA~GfK-~~ed~g~----t----~~~I~~aL~vA~~~dv~V~iHtdt 250 (568)
T PRK13985 190 MNLGFLGKG---N----SSNDASLADQIEA---GAIGFK-IHEDWGT----T----PSAINHALDVADKYDVQVAIHTDT 250 (568)
T ss_pred ccEEEecCC---c----cCCHHHHHHHHHc---CCEEEE-ECCccCC----C----HHHHHHHHHHHHHcCCEEEEeCCC
Confidence 234444211 1 1225667777654 467776 5556521 1 247788889999999999999997
Q ss_pred ch-----HHHHHHHHHhCCCCCCcEEEEecCCC-HHHHHHHHcCccchhHhhhcCCCceeeccCCCCC
Q psy4448 150 AK-----SDFIEIMKEYAPKLPRKGVIHSFDGT-PFQAVDSLKTKENLETVKSIPEDRLLLETDCPWC 211 (487)
Q Consensus 150 a~-----~d~l~iLk~~~~~~~~~~v~H~FsG~-~~~a~~~l~~~~g~e~v~~iP~driLlETD~P~l 211 (487)
.. +++++.+ ..+ .+.+-+.+|. ... .-++++.+...++|--|--|-+
T Consensus 251 lne~g~~E~t~aa~---~gr---~iH~~H~egagggh---------apdi~~~~~~~nvlp~stnpt~ 303 (568)
T PRK13985 251 LNEAGCVEDTMAAI---AGR---TMHTFHTEGAGGGH---------APDIIKVAGEHNILPASTNPTI 303 (568)
T ss_pred CCCchhhHHHHHHh---cCC---eEEEEeccCCCccc---------hhhHHHHcCCCCcccCCCCCCC
Confidence 43 2333333 221 2222223332 111 1255666777777777776665
No 84
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=95.86 E-value=0.36 Score=51.70 Aligned_cols=61 Identities=10% Similarity=-0.049 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhhCCCCEEEEecCchHHHHHHHH-----------HhCCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 127 KYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMK-----------EYAPKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 127 ~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk-----------~~~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
+.+++..++|+++++||.+|.-....+....++ +.+.-.+.-.+.||+..+.++++.+-+.
T Consensus 205 ~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~~~~g~~~v~~l~~~Gll~~~~~~~H~~~~~~~d~~~la~~ 276 (442)
T PRK07203 205 ATLEKCREAVKETGRGYHIHVAEGIYDVSDSHKKYGKDIVERLADFGLLGEKTLAAHCIYLSDEEIDLLKET 276 (442)
T ss_pred HHHHHHHHHHHHcCCcEEEEecCChHHHHHHHHHcCCCHHHHHHhCCCCCCCcEEEEeecCCHHHHHHHHhc
Confidence 578999999999999999999887665544444 3322122346789999999998887776
No 85
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=95.83 E-value=0.14 Score=54.38 Aligned_cols=121 Identities=17% Similarity=0.175 Sum_probs=67.2
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC-C-----HHhHHHHHHHHhcCC--CeEEEeec
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT-N-----VEDSISSLKLAQSDE--RLYSTVGC 74 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~-~-----~~~~~~~~~la~~~~--~v~~avGi 74 (487)
+||.|+|+.+... ....++......+...|++.++.+.. + .+.++...+.++... .+....|+
T Consensus 41 ~ID~H~H~~~~~~---------~~~~~~~~~~~~~~~~GvTtv~~~~~t~p~~~~~~~l~~~~~~~~~~~~vd~~~~~~~ 111 (411)
T TIGR00857 41 FIDLHVHLRDPGE---------EYKEDIESGSKAAAHGGFTTVADMPNTKPPIDTPETLEWKLQRLKKVSLVDVHLYGGV 111 (411)
T ss_pred EEEcccCCCCCCC---------ccHhHHHHHHHHHHhCCeEEEEEecCCCCCCCcHHHHHHHHHHhccCCcccEEEEEEE
Confidence 8999999975210 11346666667788899998887642 1 233444444444322 33444555
Q ss_pred CCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC
Q psy4448 75 HPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN 149 (487)
Q Consensus 75 HP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~ 149 (487)
..... ...++++..+... .+++ |=...+..+ . .=...+.+.++.|+++++|+.+|+.+
T Consensus 112 ~~~~~-------~~~l~e~~~l~~~---Gv~g-~~f~~~~~~--~----~~~~~l~~~~~~a~~~g~~v~iH~E~ 169 (411)
T TIGR00857 112 TQGNQ-------GKELTEAYELKEA---GAVG-RMFTDDGSE--V----QDILSMRRALEYAAIAGVPIALHAED 169 (411)
T ss_pred ecCCc-------cccHHHHHHHHHC---CcEE-EEEEeCCcc--c----CCHHHHHHHHHHHHHcCCEEEEecCC
Confidence 43221 1124555555543 3444 111222111 0 11345667789999999999999875
No 86
>PRK07627 dihydroorotase; Provisional
Probab=95.75 E-value=3.6 Score=44.10 Aligned_cols=122 Identities=11% Similarity=0.126 Sum_probs=68.2
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCC------HHhHHHHHHHHhcCCCeEEEeecCC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTN------VEDSISSLKLAQSDERLYSTVGCHP 76 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~------~~~~~~~~~la~~~~~v~~avGiHP 76 (487)
+||.|+|+..+.+ ...++++.....|...||+.++.+... .+..+.....++....+.. +++++
T Consensus 57 ~iD~H~H~~~~g~---------~~~e~~~t~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 126 (425)
T PRK07627 57 LVDLSARLREPGY---------EYKATLESEMAAAVAGGVTSLVCPPDTDPVLDEPGLVEMLKFRARNLNQAHV-YPLGA 126 (425)
T ss_pred EEeccccccCCCc---------cccCcHHHHHHHHHhCCeeEEEeCCCCCCCCCCHHHHHHHHHHhhccCceeE-EEeCe
Confidence 8999999965422 114677777788888999988865322 2233333333333333322 33333
Q ss_pred CCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc
Q psy4448 77 TRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA 150 (487)
Q Consensus 77 ~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a 150 (487)
-..... ...++++.++.+. .+.++- ++.. ... -...+.+.++.+++++.|+++|+.+.
T Consensus 127 ~~~g~~----~~~~~~i~~l~~~---G~~~fk----~~~~-~~~----~~~~l~~~~~~~~~~~~~v~~H~E~~ 184 (425)
T PRK07627 127 LTVGLK----GEVLTEMVELTEA---GCVGFS----QANV-PVV----DTQVLLRALQYASTFGFTVWLRPLDA 184 (425)
T ss_pred EEcCCC----ccCHHHHHHHHhC---CEEEEE----cCCc-ccC----CHHHHHHHHHHHHhcCCEEEEecCCh
Confidence 221110 1235667776543 455554 1211 111 12346667788889999999999875
No 87
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=95.70 E-value=0.12 Score=57.01 Aligned_cols=108 Identities=14% Similarity=0.151 Sum_probs=64.6
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCCHH-------------hHHHHHHHHhcCCCeE
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVE-------------DSISSLKLAQSDERLY 69 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~~~-------------~~~~~~~la~~~~~v~ 69 (487)
+||+|+|+..+.. .+.|...||+.++..++.|. .....++.++..+
T Consensus 131 ~ID~HvH~~~P~~------------------~~aALagGVTTVi~mg~gP~~gt~~~t~tpG~~~l~~~l~~a~~~p--- 189 (568)
T PRK13207 131 GIDTHIHFICPQQ------------------IEEALASGVTTMIGGGTGPATGTNATTCTPGPWHIHRMLQAADAFP--- 189 (568)
T ss_pred eEECccCCccccH------------------HHHHHcCCCCEEEcCCcCCccCCcccccccchHHHHHHHHHhhcCC---
Confidence 7999999875421 25667889999988654431 1333444444333
Q ss_pred EEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC
Q psy4448 70 STVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN 149 (487)
Q Consensus 70 ~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~ 149 (487)
.-+|++-.- . ....+.|+++++. .+.++. +-.||.. -...+.+.++.|.+++.||.+|++.
T Consensus 190 in~g~~g~g---~----~~~~~~L~e~i~a---GA~gfK-i~~d~g~--------t~~~l~~aL~~A~~~gv~V~iHa~t 250 (568)
T PRK13207 190 MNIGFLGKG---N----ASLPEALEEQIEA---GAIGLK-LHEDWGA--------TPAAIDNCLSVADEYDVQVAIHTDT 250 (568)
T ss_pred ceEEEEcCC---C----cccHHHHHHHHHc---CCCEEe-ecCCCCC--------CHHHHHHHHHHHHHhCCEEEEeCCC
Confidence 123332110 0 1224567776654 455664 3334311 2367888999999999999999986
Q ss_pred c
Q psy4448 150 A 150 (487)
Q Consensus 150 a 150 (487)
.
T Consensus 251 l 251 (568)
T PRK13207 251 L 251 (568)
T ss_pred c
Confidence 4
No 88
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=95.70 E-value=0.26 Score=52.65 Aligned_cols=62 Identities=8% Similarity=0.047 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCchHHH-----------HHHHHHhCCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNAKSDF-----------IEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a~~d~-----------l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
.+.++..+++|+++++||.+|+-....+. ++.+.+.+.-.+...+.||..-+.+.++.+.+.
T Consensus 189 ~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~G~~~i~~l~~~g~l~~r~~~~H~~~l~~~~~~~la~~ 261 (430)
T PRK06038 189 EEFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQYGMCSVNYLDDIGFLGPDVLAAHCVWLSDGDIEILRER 261 (430)
T ss_pred HHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHhc
Confidence 35788999999999999999998865433 233444432222235689999999998888887
No 89
>PRK05451 dihydroorotase; Provisional
Probab=95.68 E-value=0.31 Score=50.67 Aligned_cols=118 Identities=14% Similarity=0.062 Sum_probs=63.4
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC------CHHhHHHHHHH-HhcCC---CeEEEe
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT------NVEDSISSLKL-AQSDE---RLYSTV 72 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~------~~~~~~~~~~l-a~~~~---~v~~av 72 (487)
-||.|+||-+.. ..++++.-.+ ++++.++.+.. +.+..+...+. +++++ +++...
T Consensus 10 ~~d~h~hl~~~~--------------~~~~~~~~~~-~~~t~~v~mPnt~P~~~~~~~l~~~~~~a~~~~~~~~d~~~~~ 74 (345)
T PRK05451 10 PDDWHLHLRDGA--------------MLKAVVPYTA-RQFGRAIVMPNLVPPVTTVAQALAYRERILAALPAGSNFEPLM 74 (345)
T ss_pred cceEEEecCCch--------------HHHHHHHHHH-HhcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCCcEEEEE
Confidence 589999998631 1223333333 56888887632 23333333333 33333 356667
Q ss_pred ecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEE-EEEeeCCCCCCC--CCCChHHHHHHHHHHHHHhhhCCCCEEEEecC
Q psy4448 73 GCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVV-AFGEFGLDYDRV--QYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN 149 (487)
Q Consensus 73 GiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vv-aIGEIGLD~~~~--~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~ 149 (487)
|+++... ..+++|+++.+. .++ ++ -+-..+... .....+ ...+...++.|.++|+||++|+-+
T Consensus 75 ~i~~~~~--------~~~~El~~~~~~---Gvv~g~-Kl~~~~~~~~~~~~~~d--d~~l~~~~e~~~~~g~~V~vHaE~ 140 (345)
T PRK05451 75 TLYLTDN--------TDPDELERAKAS---GVVTAA-KLYPAGATTNSDAGVTD--IEKIYPVLEAMQKLGMPLLVHGEV 140 (345)
T ss_pred EEEeCCC--------CCHHHHHHHHHC---CCEEEE-EEecccCccCCccCcCC--HHHHHHHHHHHHHcCCEEEEecCC
Confidence 7877531 124667776543 322 44 332221100 000001 234666778899999999999986
No 90
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=95.59 E-value=0.8 Score=49.04 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHh-----------CCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEY-----------APKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~-----------~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
.+.+++.+++|.++++||.+|+....++....++.+ +...+.-.+.||..-+.+.++.+.+.
T Consensus 201 ~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~r~~~~H~~~l~~~~~~~la~~ 273 (443)
T PRK09045 201 DENLERIRTLAEQLDLPIHIHLHETAQEIADSLKQHGQRPLARLARLGLLGPRLIAVHMTQLTDAEIALLAET 273 (443)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecCcHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCCCHHHHHHHHHc
Confidence 468899999999999999999976555444444432 22112234679999888888887776
No 91
>PRK06687 chlorohydrolase; Validated
Probab=95.58 E-value=0.74 Score=48.88 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCchHHHHHHH-----------HHhCCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIM-----------KEYAPKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iL-----------k~~~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
.+.+++..++|+++++|+.+|+-....+....+ .+.+.-.+.-.+.||..-+.++++.+.+.
T Consensus 195 ~e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~~~~~~~~~la~~ 267 (419)
T PRK06687 195 RDLLEASLEMAKELNIPLHVHVAETKEESGIILKRYGKRPLAFLEELGYLDHPSVFAHGVELNEREIERLASS 267 (419)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHCcCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHHc
Confidence 346899999999999999999987655433333 33322112235789999999998887776
No 92
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=95.56 E-value=0.34 Score=47.52 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=29.3
Q ss_pred CcEEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEE
Q psy4448 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVT 48 (487)
Q Consensus 1 m~~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v 48 (487)
||++|.|+|.... | ...+++++++|.+.|+..+.+.
T Consensus 1 ~m~~DlHvHt~~d-------~-----~~~~~e~i~~A~~~Gl~~i~it 36 (237)
T PRK00912 1 MKFYDLNVHAVPD-------G-----YDTVLRLISEASHLGYSGIALS 36 (237)
T ss_pred CCceEeccCCCCC-------C-----cchHHHHHHHHHHCCCCEEEEe
Confidence 8999999998422 1 4689999999999999877654
No 93
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=95.54 E-value=0.28 Score=54.36 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=87.5
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCC-------------HHhHHHHHHHHhcCCCeE
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTN-------------VEDSISSLKLAQSDERLY 69 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~-------------~~~~~~~~~la~~~~~v~ 69 (487)
+||+|+|+..+.+ ...|...||+.++..|++ +..+...++.++..|-
T Consensus 135 ~ID~HvH~~~P~~------------------~~aAl~gGVTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~~a~~~pv-- 194 (572)
T PRK13309 135 GIDTHIHLISPQQ------------------AYHALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSIEGLPV-- 194 (572)
T ss_pred EEEeecccCCcch------------------HHHHHcCceEEEEecCCCCccCCCCCCCCCCHHHHHHHHHHhccCCc--
Confidence 7999999876533 145677899988853322 2355666666665552
Q ss_pred EEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC
Q psy4448 70 STVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN 149 (487)
Q Consensus 70 ~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~ 149 (487)
-+|++-. ... ...+.|.++++. .+++++ +..||.. =...+.+.++.|.+++.||.+|++.
T Consensus 195 -n~g~~gk---g~~----~~~~~l~el~~a---Ga~gfk-~~~d~g~--------t~~~L~~aLe~A~~~gv~VaiH~d~ 254 (572)
T PRK13309 195 -NVGILGK---GNS----YGRGPLLEQAIA---GVAGYK-VHEDWGA--------TAAALRHALRVADEVDIQVAVHTDS 254 (572)
T ss_pred -CEEEEcC---CCC----CCHHHHHHHHhc---CcEEEE-ecCcCCc--------CHHHHHHHHHHHHhcCCEEEEeCCc
Confidence 1233211 110 113456666654 466665 3345421 2347788889999999999999987
Q ss_pred chH-HHHH-HHHHhCCCCCCcEEEEecCCC-HHHHHHHHcCccchhHhhhcCCCceeeccCCCCC
Q psy4448 150 AKS-DFIE-IMKEYAPKLPRKGVIHSFDGT-PFQAVDSLKTKENLETVKSIPEDRLLLETDCPWC 211 (487)
Q Consensus 150 a~~-d~l~-iLk~~~~~~~~~~v~H~FsG~-~~~a~~~l~~~~g~e~v~~iP~driLlETD~P~l 211 (487)
..+ ...+ ++..++.+. --++|- .|. ... .-++++.+...++|--|-.|-+
T Consensus 255 lnE~g~vE~~~aa~~grp--ih~~H~-~Gagggh---------apd~~~~~~~~~~~~~st~pt~ 307 (572)
T PRK13309 255 LNECGYVEDTIDAFEGRT--IHTFHT-EGAGGGH---------APDIIKVASQTNVLPSSTNPTL 307 (572)
T ss_pred cccchhHHHHHHHhCCCc--eeeeec-cCcccCC---------chhHHHhcCCCCcccCCCCCCC
Confidence 543 2333 345554321 112332 221 111 1245666666777766666654
No 94
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=95.49 E-value=0.3 Score=53.87 Aligned_cols=157 Identities=13% Similarity=0.128 Sum_probs=87.3
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEE---------CCCHHhHHHHHHHHhcCCCeEEEee
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVT---------GTNVEDSISSLKLAQSDERLYSTVG 73 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v---------~~~~~~~~~~~~la~~~~~v~~avG 73 (487)
+||+|+|+..+.+ .+.|...||+.++.. ...+..+...++.++..+- -+|
T Consensus 135 ~ID~HVH~~~Pg~------------------~~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~~pv---N~g 193 (569)
T PRK13308 135 AIDVHVHFDSAQL------------------VDHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEAWPV---NFG 193 (569)
T ss_pred EEEeeeCCCCccH------------------HHHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHhcCCc---cEE
Confidence 7999999976432 156778899988862 2234556666666665442 233
Q ss_pred cCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchH-
Q psy4448 74 CHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKS- 152 (487)
Q Consensus 74 iHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~- 152 (487)
+|-.- .. ...+.|+++++. .+.++. +..||.. --.++.+.|+.|.+++.||.+|++...+
T Consensus 194 ~~gkG---~~----s~~aeL~eli~a---GA~GfK-i~ed~g~--------t~~~i~~aL~~A~~~dv~VaiHadtlne~ 254 (569)
T PRK13308 194 FLGRG---NS----SKPAALIEQVEA---GACGLK-IHEDWGA--------MPAAIDTCLEVADEYDFQVQLHTDTLNES 254 (569)
T ss_pred EEcCC---cc----cCHHHHHHHHHC---CCCEEe-ecCCCCC--------CHHHHHHHHHHHHhcCCEEEEeCCCcCcc
Confidence 33111 10 124567777654 455554 3334311 2367889999999999999999998321
Q ss_pred HHHHH-HHHhCCCCCCcEEEEecCC-CHHHHHHHHcCccchhHhhhcCCCceeeccCCCCC
Q psy4448 153 DFIEI-MKEYAPKLPRKGVIHSFDG-TPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWC 211 (487)
Q Consensus 153 d~l~i-Lk~~~~~~~~~~v~H~FsG-~~~~a~~~l~~~~g~e~v~~iP~driLlETD~P~l 211 (487)
-++|. +.....+ .+.+-++.| +.-.+ -++++.+...++|--|--|-.
T Consensus 255 g~~E~t~~a~~gr---~iH~~H~egagggha---------pd~l~~~~~~n~lp~stnpt~ 303 (569)
T PRK13308 255 GFVEDTLAAIGGR---TIHMYHTEGAGGGHA---------PDIIRVVGEPHCLPSSTNPTN 303 (569)
T ss_pred hHHHHHHHHhcCC---eEEEEeccCCccCch---------hHHHHHhCCCCccCCCCCCCC
Confidence 22222 2222221 232222333 21122 245556667777776666654
No 95
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=95.35 E-value=0.023 Score=55.15 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=34.1
Q ss_pred cCCccccCCCChhhhHHHHHHHHHHhhhCCCCEEEEec--c---chHHHHHHHHH
Q psy4448 235 WKPDKMVKSRNEPANIVYFRKQLDLSVTHKLPLFLHCR--N---AKSDFIEIMKE 284 (487)
Q Consensus 235 ~~~~~~~~~~n~P~Q~~~F~~ql~lA~~~~lPl~iH~r--~---a~~~~l~il~~ 284 (487)
+|+.++. -+.+.-+++|+.||+||++++.|++||+- + +-..+++|+.+
T Consensus 100 iGEiGLe--~~t~~E~evf~~QL~LA~e~dvPviVHTPr~nK~e~t~~ildi~~~ 152 (254)
T COG1099 100 IGEIGLE--EATDEEKEVFREQLELARELDVPVIVHTPRRNKKEATSKILDILIE 152 (254)
T ss_pred eeecccc--cCCHHHHHHHHHHHHHHHHcCCcEEEeCCCCcchhHHHHHHHHHHH
Confidence 4555543 34555899999999999999999999993 2 23344555554
No 96
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=95.30 E-value=0.22 Score=53.11 Aligned_cols=80 Identities=11% Similarity=0.096 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHH-----------HhCCCCCCcEEEEecCCCHHHHHHHHcCccchhH
Q psy4448 125 QLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMK-----------EYAPKLPRKGVIHSFDGTPFQAVDSLKTKENLET 193 (487)
Q Consensus 125 Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk-----------~~~~~~~~~~v~H~FsG~~~~a~~~l~~~~g~e~ 193 (487)
-.+.++...++|+++|+||.+|+-...++....++ .++.-.+....+||...+.++...+.+. |. .
T Consensus 196 ~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~g~~~~~~~~~~g~l~~~~~~~H~~~~~~~e~~~l~~~--g~-~ 272 (421)
T COG0402 196 SPELLESLDELARKYGLPVHIHLAETLDEVERVLEPYGARPVERLDLLGLLGSHTLLAHCVHLSEEELELLAES--GA-S 272 (421)
T ss_pred CHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHhhcCCCHHHHHHHcCCCCCCeEEEEeccCCHHHHHHHhhC--CC-e
Confidence 45556666777779999999999887777666665 2221112347899999999988877755 32 3
Q ss_pred hhhcCCCceeeccC
Q psy4448 194 VKSIPEDRLLLETD 207 (487)
Q Consensus 194 v~~iP~driLlETD 207 (487)
|..+|.-++.+.+=
T Consensus 273 v~~cP~sN~~L~sG 286 (421)
T COG0402 273 VVHCPRSNLKLGSG 286 (421)
T ss_pred EEECcchhccccCC
Confidence 45666666666554
No 97
>PRK09357 pyrC dihydroorotase; Validated
Probab=95.15 E-value=0.33 Score=51.56 Aligned_cols=120 Identities=16% Similarity=0.217 Sum_probs=70.2
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC-C-----HHhHHHHHHHHhcCC--CeEEEeec
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT-N-----VEDSISSLKLAQSDE--RLYSTVGC 74 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~-~-----~~~~~~~~~la~~~~--~v~~avGi 74 (487)
+||+|+|+..+.. ...+++....+.+...||+.++.+.. . .+..+...+.++..+ ++....++
T Consensus 55 ~ID~H~H~~~~~~---------~~~e~~~~~~~~a~~~GvTt~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (423)
T PRK09357 55 LVDLHVHLREPGQ---------EDKETIETGSRAAAAGGFTTVVAMPNTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGAI 125 (423)
T ss_pred EEecccccCCCCc---------cccccHHHHHHHHHhCCCeEEEecCCCCCCCCcHHHHHHHHHHhccCCcccEEEEEEE
Confidence 8999999864211 11356666667778899998887653 1 234444555554433 23322222
Q ss_pred CCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc
Q psy4448 75 HPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA 150 (487)
Q Consensus 75 HP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a 150 (487)
.... . ...++++..+... .+.+++..|+ +. .+ .+.+++.+++|++++.||.+|+.+.
T Consensus 126 ~~~~-~------~~~~~~~~~l~~~---gv~~~~~~~~-~~----~~----~~~l~~~~~~a~~~g~~v~iH~ee~ 182 (423)
T PRK09357 126 TKGL-A------GEELTEFGALKEA---GVVAFSDDGI-PV----QD----ARLMRRALEYAKALDLLIAQHCEDP 182 (423)
T ss_pred EeCC-C------CccHHHHHHHHhC---CcEEEECCCc-cc----CC----HHHHHHHHHHHHhcCCEEEEeCCCH
Confidence 2111 0 1224555555532 4667764442 11 11 3568888999999999999999873
No 98
>PRK05985 cytosine deaminase; Provisional
Probab=95.11 E-value=0.33 Score=51.01 Aligned_cols=126 Identities=13% Similarity=0.104 Sum_probs=66.2
Q ss_pred HHHHHhcCCCEEEE-----ECCCHHhHHHHHHHHhcCC-Ce---EEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCE
Q psy4448 34 LNRAWNAGLEKIIV-----TGTNVEDSISSLKLAQSDE-RL---YSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKV 104 (487)
Q Consensus 34 l~ra~~~GV~~ii~-----v~~~~~~~~~~~~la~~~~-~v---~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~v 104 (487)
+.++...|++.+-. ....+..+..++++.+.+. .+ ..++.-|+-.. .....+.+++.+... .
T Consensus 104 ~~~~l~~G~t~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~------~~~~~~ll~~~l~~g---~ 174 (391)
T PRK05985 104 ARAAAAAGTTAMRSHVDVDPDAGLRHLEAVLAARETLRGLIDIQIVAFPQSGVLS------RPGTAELLDAALRAG---A 174 (391)
T ss_pred HHHHHhcCcceEEeeEccCCCcccchHHHHHHHHHHhhCcccEEEEeccCccccC------CcCHHHHHHHHHHcC---C
Confidence 55667889887632 2233455667777665553 22 22222222211 111234566666552 2
Q ss_pred EEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchH----HHHHHH---HHhCCCCCCcEEEEecC
Q psy4448 105 VAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKS----DFIEIM---KEYAPKLPRKGVIHSFD 175 (487)
Q Consensus 105 vaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~----d~l~iL---k~~~~~~~~~~v~H~Fs 175 (487)
-.+|.++.-.. . ..=.+.+...+++|+++++|+.+|+....+ .+.+++ ++.+... ...+-|+..
T Consensus 175 ~~~gg~~p~~~--~----~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~~~~~~~~~e~~~~~g~~~-~~~i~H~~~ 245 (391)
T PRK05985 175 DVVGGLDPAGI--D----GDPEGQLDIVFGLAERHGVGIDIHLHEPGELGAFQLERIAARTRALGMQG-RVAVSHAFC 245 (391)
T ss_pred CEEeCCCCCCc--C----CCHHHHHHHHHHHHHHhCCCcEEeeCCCCCccHHHHHHHHHHHHHhCCCC-CEehhhhhh
Confidence 24544433211 1 112378889999999999999999876432 333333 3343211 135668765
No 99
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=95.09 E-value=2 Score=47.44 Aligned_cols=128 Identities=13% Similarity=0.237 Sum_probs=73.6
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEE------CCCHHhHHHHHHHHhcCC-CeEEEeecC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVT------GTNVEDSISSLKLAQSDE-RLYSTVGCH 75 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v------~~~~~~~~~~~~la~~~~-~v~~avGiH 75 (487)
+||+|.|.-+..+ .+.+..+..-..|++.+|.= -...+-.+.+++-+++-| ++|..+
T Consensus 79 fID~H~HIESSm~-------------tP~~FA~~Vlp~GtTtvV~DPHEIaNV~G~~Gi~~ml~~a~~~pl~~~~~~--- 142 (584)
T COG1001 79 FIDAHLHIESSML-------------TPSEFARAVLPHGTTTVVSDPHEIANVLGEDGIRFMLDEAKETPLKVYVML--- 142 (584)
T ss_pred eeecceecccccc-------------CHHHHHHHhhccCceEEeeCcHHHHhhccHHHHHHHHHHHhhCCeEEEEec---
Confidence 8999999876543 33333333346787766531 012344556677777766 344333
Q ss_pred CCCCCCc---CCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchH
Q psy4448 76 PTRCSEF---ENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKS 152 (487)
Q Consensus 76 P~~~~~~---~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~ 152 (487)
|.+++.. +...+-..+.+++++.. |+|+++||+ +||-.+ .+.+.. .-.-|+.+++.++||-=|+....+
T Consensus 143 pScVPat~~Et~Ga~l~a~~i~e~~~~--p~Vigl~E~-Mn~pgV----i~~D~~-~l~kl~a~~~~~k~VdGHapgl~g 214 (584)
T COG1001 143 PSCVPATPFETSGAELTAEDIKELLEH--PEVIGLGEM-MNFPGV----IEGDPD-MLAKLEAARKAGKPVDGHAPGLSG 214 (584)
T ss_pred ccCccCCccccCCceecHHHHHHHhhC--CCccchhhh-cCCchh----ccCCHH-HHHHHHHHHHcCCeecccCCCCCh
Confidence 4443321 01111225678888887 899999998 554221 111222 334577888888888888777554
Q ss_pred HH
Q psy4448 153 DF 154 (487)
Q Consensus 153 d~ 154 (487)
..
T Consensus 215 ~~ 216 (584)
T COG1001 215 KE 216 (584)
T ss_pred HH
Confidence 33
No 100
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=95.01 E-value=4.3 Score=42.15 Aligned_cols=57 Identities=14% Similarity=0.077 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhhCCCCEEEEecCch-HHHHHHHHHhCCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 127 KYFRKQLDLSVTHKLPLFLHCRNAK-SDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 127 ~vF~~qL~LA~el~lPViIH~r~a~-~d~l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
+.|++.+++|+++++||.+|+-... ...++.+.+.+. ..+-||..-+.+.++.+.+.
T Consensus 197 ~~~~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~g~----~~~~H~~~~~~~~l~~la~~ 254 (377)
T TIGR01224 197 EQSRRILQAAQEAGLPVKLHAEELSNLGGAELAAKLGA----VSADHLEHASDAGIKALAEA 254 (377)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCCCHHHHHHHcCC----CccHHHhcCCHHHHHHHHhc
Confidence 3589999999999999999995321 112333433321 23558887787777777666
No 101
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=94.84 E-value=1.3 Score=47.57 Aligned_cols=62 Identities=8% Similarity=-0.062 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhhCCCCEEEEecCchHHHH-----------HHHHHhCCCCCCcEEEEecCCCHHHHHHHHcCc
Q psy4448 127 KYFRKQLDLSVTHKLPLFLHCRNAKSDFI-----------EIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKTK 188 (487)
Q Consensus 127 ~vF~~qL~LA~el~lPViIH~r~a~~d~l-----------~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~~ 188 (487)
+.++...++|+++++|+.+|.-....+.. +.|.+.+.-.+...+.||..-+.++++.+-+.+
T Consensus 204 ~~l~~~~~lA~~~~~~i~~H~~E~~~e~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~~~~~d~~~la~~g 276 (441)
T TIGR03314 204 AGLEMCREAVQATGRGFHIHVAEDIYDVEDSHHKYGKDIVERLADFGLLGSKTLAAHCIYLSDREIELLNETD 276 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHcCCCHHHHHHHCCCCCCCeEEEEEecCCHHHHHHHHHcC
Confidence 57888899999999999999988765544 444443322223457899999999988877763
No 102
>PRK07328 histidinol-phosphatase; Provisional
Probab=94.65 E-value=1.7 Score=43.51 Aligned_cols=38 Identities=18% Similarity=0.088 Sum_probs=29.8
Q ss_pred CcEEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEE
Q psy4448 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVT 48 (487)
Q Consensus 1 m~~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v 48 (487)
||++|.|+|.....- | ...+++++++|.+.|+..+...
T Consensus 1 ~m~~D~H~HT~~s~~-----~-----~~~~ee~v~~A~~~Gl~~i~~T 38 (269)
T PRK07328 1 KMLVDYHMHTPLCGH-----A-----VGTPEEYVQAARRAGLKEIGFT 38 (269)
T ss_pred CCceeeccCCCCCCC-----C-----CCCHHHHHHHHHHCCCCEEEEe
Confidence 899999999864211 2 4579999999999999876654
No 103
>PRK07575 dihydroorotase; Provisional
Probab=94.63 E-value=7.7 Score=41.64 Aligned_cols=145 Identities=12% Similarity=0.069 Sum_probs=73.4
Q ss_pred CChhhhHHHHHHHHHHhhhCCCCEEE-EeccchHHHHHHHHHhCCC-CC--CCcEEEEeeCCc-----ccccc--cccch
Q psy4448 244 RNEPANIVYFRKQLDLSVTHKLPLFL-HCRNAKSDFIEIMKEYAPK-LP--RKGVIHSFDGTP-----FQAVD--SLKTK 312 (487)
Q Consensus 244 ~n~P~Q~~~F~~ql~lA~~~~lPl~i-H~r~a~~~~l~il~~~~~~-~~--~~gv~hsfsG~~-----~~~~~--~~k~~ 312 (487)
|+...-...+++-++||++.+.||-| |.- ..+-++++++..+. .. ..--|..|+-.. ..+.+ .+++.
T Consensus 205 ~p~~aE~~av~~~~~la~~~g~~lhi~HiS--t~~~v~~i~~~k~~~vt~ev~phhL~l~~~~~~~~~~~~k~~PPLR~~ 282 (438)
T PRK07575 205 QDEEAALLATRLALKLSKKYQRRLHILHLS--TAIEAELLRQDKPSWVTAEVTPQHLLLNTDAYERIGTLAQMNPPLRSP 282 (438)
T ss_pred CcHHHHHHHHHHHHHHHHHHCCCEEEEECC--CHHHHHHHHHhcCCCEEEEEchhhheeCHHHHhCCCceEEEeCCCCCH
Confidence 34445566778889999999999987 887 45556666654320 00 000111222110 00001 14444
Q ss_pred hhH-HHhhhCCC-CceEeccCCCCCCCCCCCcchhhHhhhhhhhhhhccCCccCCCCCCccccHHHHHHHHHHhhCCCHH
Q psy4448 313 ENL-ETVKSIPE-DRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVERE 390 (487)
Q Consensus 313 ~~~-e~v~~iPl-drlLlETD~P~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~P~~l~~v~~~iA~ikg~~~~ 390 (487)
+.+ .+++.+-- .--.|=||.--... .. |...+.. ...|-......+..+++.+. -.+++++
T Consensus 283 ~d~~~L~~~l~~G~id~i~sDh~p~~~-----~~----------k~~~~~~-~~~G~~g~e~~l~~l~~~~~-~~~lsl~ 345 (438)
T PRK07575 283 EDNEALWQALRDGVIDFIATDHAPHTL-----EE----------KAQPYPN-SPSGMPGVETSLPLMLTAAM-RGKCTVA 345 (438)
T ss_pred HHHHHHHHHHhCCCCCEEecCCCCCCH-----HH----------ccCCccc-CCCCcccHHHHHHHHHHHHh-cCCCCHH
Confidence 444 34444321 12346777632110 00 0000000 00111123334566665542 2469999
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy4448 391 KLGPIIHQNTLRLFFPH 407 (487)
Q Consensus 391 ~va~~~~~N~~rlf~~~ 407 (487)
++.+.++.|..++|++.
T Consensus 346 ~~~~~~s~npAk~lgl~ 362 (438)
T PRK07575 346 QVVRWMSTAVARAYGIP 362 (438)
T ss_pred HHHHHHhhhHHHHcCCC
Confidence 99999999999999984
No 104
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=94.57 E-value=1.7 Score=46.55 Aligned_cols=61 Identities=7% Similarity=0.006 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhhCCCCEEEEecCchHHHH-----------HHHHHhCCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 127 KYFRKQLDLSVTHKLPLFLHCRNAKSDFI-----------EIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 127 ~vF~~qL~LA~el~lPViIH~r~a~~d~l-----------~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
+.+++..++|+++++|+.+|+-....++. +.|.+.+.-.+...+.||..-+.++++.+.+.
T Consensus 197 e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~g~~~~~~l~~~Gll~~~~~~~H~~~l~~~d~~~la~~ 268 (435)
T PRK15493 197 ELLEECARIAVENQTMVHIHLSETEREVRDIEAQYGKRPVEYAASCGLFKRPTVIAHGVVLNDNERAFLAEH 268 (435)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHHc
Confidence 57888999999999999999976544433 33444332222346889998888888887776
No 105
>PRK09248 putative hydrolase; Validated
Probab=94.49 E-value=4.9 Score=39.51 Aligned_cols=39 Identities=13% Similarity=0.068 Sum_probs=29.9
Q ss_pred cEEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC
Q psy4448 2 KYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT 50 (487)
Q Consensus 2 ~~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~ 50 (487)
|++|.|+|...... | ...+++++++|.+.|+..+.+.--
T Consensus 3 ~~~D~H~HT~~s~~-----~-----~~~~~e~v~~A~~~G~~~i~iTdH 41 (246)
T PRK09248 3 YPVDTHTHTIASGH-----A-----YSTLHENAAEAKQKGLKLFAITDH 41 (246)
T ss_pred cceEeCcCCCCCCC-----C-----CCCHHHHHHHHHHCCCCEEEECCC
Confidence 37899999875321 2 457999999999999998776533
No 106
>PRK09230 cytosine deaminase; Provisional
Probab=94.35 E-value=2.6 Score=45.12 Aligned_cols=62 Identities=11% Similarity=0.042 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhhCCCCEEEEecCch-------HHHHHHHHHhCCCCCCcEEEEecCC-------CHHHHHHHHcC
Q psy4448 125 QLKYFRKQLDLSVTHKLPLFLHCRNAK-------SDFIEIMKEYAPKLPRKGVIHSFDG-------TPFQAVDSLKT 187 (487)
Q Consensus 125 Q~~vF~~qL~LA~el~lPViIH~r~a~-------~d~l~iLk~~~~~~~~~~v~H~FsG-------~~~~a~~~l~~ 187 (487)
-.+.|+...++|+++++|+.+|.-... ..+.+++.+.+.. +.-.+-||..- +.+.++.+.+.
T Consensus 193 ~~e~l~~~~~~A~~~g~~~~~H~~E~~~~~~~~~~~~~~~~~~~gl~-~~v~~~H~~~l~~~~~~~~~~~~~~La~~ 268 (426)
T PRK09230 193 GVESLHKAFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHREGMG-ARVTASHTTAMHSYNGAYTSRLFRLLKMS 268 (426)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEECCCCCcchHHHHHHHHHHHHhCCC-CCEEEEecCchhcCCHHHHHHHHHHHHHc
Confidence 477899999999999999999986532 2456777776532 22356688776 45566666655
No 107
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=94.35 E-value=7 Score=39.98 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCc--hHHHHHHHHHhCCCCCCcEEEEecCC--CHHHHHHHHcC
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNA--KSDFIEIMKEYAPKLPRKGVIHSFDG--TPFQAVDSLKT 187 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a--~~d~l~iLk~~~~~~~~~~v~H~FsG--~~~~a~~~l~~ 187 (487)
.+.|++..++|+++++|+.+|+-.. .+++...+.+.+. ..+.|+..- +.+.++.+.+.
T Consensus 171 ~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~----~ri~Hg~~l~~~~~~i~~l~~~ 232 (324)
T TIGR01430 171 PPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGA----TRIGHGVRALEDPELLKRLAQE 232 (324)
T ss_pred HHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCc----hhcchhhhhccCHHHHHHHHHc
Confidence 4668899999999999999999865 4466666655554 357888765 44555555544
No 108
>PLN02599 dihydroorotase
Probab=94.14 E-value=8.9 Score=40.37 Aligned_cols=118 Identities=14% Similarity=0.064 Sum_probs=63.1
Q ss_pred EEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEEC------CCHHhHHHHHHHHhcC-C---CeEEEee
Q psy4448 4 IDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTG------TNVEDSISSLKLAQSD-E---RLYSTVG 73 (487)
Q Consensus 4 iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~------~~~~~~~~~~~la~~~-~---~v~~avG 73 (487)
-|-|+||-+.. -++.| -..-..|++.++++. ++.+.++...+.++.. + ++.+..|
T Consensus 29 ~d~h~hlr~~~--------------~~~~~-~~~~~gg~t~~i~MPn~~Ppv~~~~~~~~~~~~~~~~~~~~vdf~~~~~ 93 (364)
T PLN02599 29 DDWHLHLRDGA--------------KLAAV-VPHSARHFGRAIVMPNLKPPVTTTARALAYRERIMKALPPGSSFEPLMT 93 (364)
T ss_pred cceeeEccCcH--------------HHHhh-hHHhcCCcCEEEECCCCCCCcCCHHHHHHHHHHHhhhcCCCcceEEEEE
Confidence 58999997632 22333 345567899888863 2345555444444332 2 4444455
Q ss_pred cCCCCCCCcCCCchhhHHHHHHHHHhcCCCEE-EEEeeCCCCCCCCCCChHHH-HHHHHHHHHHhhhCCCCEEEEecC
Q psy4448 74 CHPTRCSEFENDPEGYLQSLDKIIKEGGKKVV-AFGEFGLDYDRVQYCPVETQ-LKYFRKQLDLSVTHKLPLFLHCRN 149 (487)
Q Consensus 74 iHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vv-aIGEIGLD~~~~~~~~~e~Q-~~vF~~qL~LA~el~lPViIH~r~ 149 (487)
+++... ..+++|+++.+. .++ ++ -+-......+ +..... ...+...++.++++|+||++|+-+
T Consensus 94 l~lt~~--------~~l~Ei~~~~~~---Gvv~gf-Klyp~~~tt~-s~~gv~d~~~l~~~le~~~e~G~~L~vH~E~ 158 (364)
T PLN02599 94 LYLTDN--------TTPEEIKAAKAS---GVVFAV-KLYPAGATTN-SQAGVTDLGKCLPVLEEMAEQGMPLLVHGEV 158 (364)
T ss_pred EecCCC--------CCHHHHHHHHHC---CCcEEE-EECcccCcCC-CccccCCHHHHHHHHHHHHhcCCEEEEecCC
Confidence 543221 124566666432 344 54 2211000000 011111 357777788899999999999987
No 109
>PRK06886 hypothetical protein; Validated
Probab=94.07 E-value=0.9 Score=47.13 Aligned_cols=131 Identities=15% Similarity=0.077 Sum_probs=71.3
Q ss_pred HHHHHhcCCCEE---EEE--CCCHHhHHHHHHHHhcCCC-eEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEE
Q psy4448 34 LNRAWNAGLEKI---IVT--GTNVEDSISSLKLAQSDER-LYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAF 107 (487)
Q Consensus 34 l~ra~~~GV~~i---i~v--~~~~~~~~~~~~la~~~~~-v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaI 107 (487)
++.+...|++.+ |-+ ...+..|+.++++.+++.. +-.-+-.-|...-. . . ...+.+++-+.. +-.|
T Consensus 75 l~~~~~~Gtt~iRtHvdvd~~~~l~~~~a~~~~r~~~~~~idlq~vafPq~g~~-~--~-~~~~l~~~al~~----advv 146 (329)
T PRK06886 75 IELMISQGVTAFGTFVDIDPICEDRAIIAAHKAREVYKHDIILKFANQTLKGVI-E--P-TAKKWFDIGSEM----VDMI 146 (329)
T ss_pred HHHHHHcCcccEeeeeccCCCccccHHHHHHHHHHHhcCcceEEEEecChhhcc-C--c-cHHHHHHHHHHh----CCEE
Confidence 333445676654 222 2256789999999888853 22222122643221 1 1 112334443322 3345
Q ss_pred EeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCch---HHHHHHHH----HhCCCCCCcEEEEecCCC
Q psy4448 108 GEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAK---SDFIEIMK----EYAPKLPRKGVIHSFDGT 177 (487)
Q Consensus 108 GEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~---~d~l~iLk----~~~~~~~~~~v~H~FsG~ 177 (487)
| |+++.- ..+.+.-.+.+++.+++|+++|+||-+|+-... ...++.+. +.+... .-.+.||++-+
T Consensus 147 G--GiP~~~--~~~~~~~~e~l~~~~~lA~~~g~~Id~Hlde~~~~~~~~le~l~~~~~~~Gl~g-rV~~sH~~~L~ 218 (329)
T PRK06886 147 G--GLPYRD--ELDYGRGLEAMDILLDTAKSLGKMVHVHVDQFNTPKEKETEQLCDKTIEHGMQG-RVVAIHGISIG 218 (329)
T ss_pred e--CccCCc--CCCCCCCHHHHHHHHHHHHHcCCCeEEeECCCCchhHHHHHHHHHHHHHcCCCC-CEEEEEecccc
Confidence 5 446541 112344567889999999999999999998642 23344443 443322 23467998744
No 110
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=93.82 E-value=0.078 Score=55.21 Aligned_cols=46 Identities=28% Similarity=0.498 Sum_probs=39.0
Q ss_pred HHHHHHHhhhCCCCEEEEeccchHHHHHHHHHhCCCCCCCcEEEEeeCCc
Q psy4448 253 FRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTP 302 (487)
Q Consensus 253 F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~~ 302 (487)
|.+|+..+ ++++||.+|++.+..++.++++..... .++.|+|||+.
T Consensus 168 ~~~~l~~~-~~~~pv~vH~~~a~~~~~~i~~~~~~g---~~~~H~fng~~ 213 (365)
T TIGR03583 168 IAKQIQQE-NLELPLMVHIGSAPPELDEILALMEKG---DVLTHCFNGKP 213 (365)
T ss_pred HHHHHHHh-cCCCcEEEEeCCCccCHHHHHHHhcCC---CeeeeeecCCC
Confidence 67788777 899999999999999999999876432 47999999963
No 111
>PRK07572 cytosine deaminase; Validated
Probab=93.74 E-value=0.77 Score=49.01 Aligned_cols=132 Identities=14% Similarity=0.111 Sum_probs=66.6
Q ss_pred HHHHHHhcCCCEEEEE---C-CCHHhHHHHHHHHhcC-CCeEE-EeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEE
Q psy4448 33 VLNRAWNAGLEKIIVT---G-TNVEDSISSLKLAQSD-ERLYS-TVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVA 106 (487)
Q Consensus 33 vl~ra~~~GV~~ii~v---~-~~~~~~~~~~~la~~~-~~v~~-avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vva 106 (487)
.+.++...|++.+-.. + .....++.+.++.... +.+.. .+.+.... .+. .....+.+++.+.. .+..
T Consensus 103 ~~~e~l~~G~Ttvrd~~d~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~g--~~~--~~~~~~~~~~~l~~---g~d~ 175 (426)
T PRK07572 103 YCDWAVARGLLAIRSHVDVCDPRLLAVEALLEVRERVAPYLDLQLVAFPQDG--VLR--SPGAVDNLERALDM---GVDV 175 (426)
T ss_pred HHHHHHHcCcccEeeccccCCCcccHHHHHHHHHHHhhccceEEEEeccChh--hcc--CccHHHHHHHHHHc---CCCE
Confidence 3344567898866552 2 1223455555543332 33221 22222211 111 11224456666654 3455
Q ss_pred EEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchH-------HHHHHHHHhCCCCCCcEEEEecCCC
Q psy4448 107 FGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKS-------DFIEIMKEYAPKLPRKGVIHSFDGT 177 (487)
Q Consensus 107 IGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~-------d~l~iLk~~~~~~~~~~v~H~FsG~ 177 (487)
|| |..+.. . ....-.+.++...++|+++++||.+|+-...+ .+.+.+.+.+... .-.+.||..-+
T Consensus 176 iG--g~p~~~--~-~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~G~~~-~v~~~H~~~l~ 247 (426)
T PRK07572 176 VG--GIPHFE--R-TMADGAESVRLLCEIAAERGLRVDMHCDESDDPLSRHIETLAAETQRLGLQG-RVAGSHLTSMH 247 (426)
T ss_pred Ee--CCCCCc--c-ccchHHHHHHHHHHHHHHcCCCeEEEECCCCChhHHHHHHHHHHHHHhCCCC-CEEEEccchhh
Confidence 66 554432 1 11223478999999999999999999954322 2333344444322 13457996644
No 112
>PRK12393 amidohydrolase; Provisional
Probab=93.55 E-value=5.1 Score=43.19 Aligned_cols=62 Identities=13% Similarity=-0.044 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHhCC-----------CCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAP-----------KLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~~~-----------~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
.+.|+...++|+++++|+.+|+....+++-..++.++. -.+.-.+.||..-+.++++.+.+.
T Consensus 217 ~e~l~~~~~~a~~~g~~~~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~ 289 (457)
T PRK12393 217 PELLREVARAARGMGLRLHSHLSETVDYVDFCREKYGMTPVQFVAEHDWLGPDVWFAHLVKLDAEEIALLAQT 289 (457)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHHc
Confidence 36788999999999999999998776665555544431 111124789999999999988887
No 113
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=93.55 E-value=11 Score=39.34 Aligned_cols=144 Identities=11% Similarity=0.107 Sum_probs=72.9
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC------CHHhHHHHHHHHhcCCCeEEEeecCC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT------NVEDSISSLKLAQSDERLYSTVGCHP 76 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~------~~~~~~~~~~la~~~~~v~~avGiHP 76 (487)
+||.|+|+..+-+ ...+|++.--..|...||+.++.+.. +.+.++...+.++... +.-+++|-
T Consensus 8 ~ID~HvH~r~pg~---------~~~ed~~sgs~AAa~GGvTtv~dmPnt~P~~~~~~~~~~~~~~a~~~s--~vd~~~~~ 76 (344)
T cd01316 8 LIDVHVHLREPGA---------THKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQSLAQAKA--RCDYAFSI 76 (344)
T ss_pred eEEeeeccCCCCc---------CCcChHHHHHHHHHhCCCeEEEECCCCCCCCCCHHHHHHHHHHhccCc--EEeEEEEe
Confidence 8999999987532 12578888778888899998887632 3455555555555433 33444552
Q ss_pred CCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCch-HHHH
Q psy4448 77 TRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAK-SDFI 155 (487)
Q Consensus 77 ~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~-~d~l 155 (487)
.-.. . ..+.+.++... ...+.+.-.-+.+ ... .+. ...++. ..-+...++|+++|+-... ...+
T Consensus 77 ~~~~-~------~~~~~~~l~~~-~~g~k~f~~~~~~----~~~-~~~-~~~~~~-~~~~~~~~~p~~~~~e~~~~~~~l 141 (344)
T cd01316 77 GATS-T------NAATVGELASE-AVGLKFYLNETFS----TLI-LDK-ITAWAS-HFNAWPSTKPIVTHAKSQTLAAVL 141 (344)
T ss_pred eecC-C------CHHHHHHHHhc-cCeEEEEECCCCC----CCc-cch-HHHHHH-HHHhcccCCCeEEehhhHHHHHHH
Confidence 1111 1 01233333211 0123332110111 100 111 112222 2234445899999995542 2456
Q ss_pred HHHHHhCCCCCCcEEEEecC
Q psy4448 156 EIMKEYAPKLPRKGVIHSFD 175 (487)
Q Consensus 156 ~iLk~~~~~~~~~~v~H~Fs 175 (487)
.+.+..+.+ -.+.|.-+
T Consensus 142 ~la~~~g~~---lhi~HiSt 158 (344)
T cd01316 142 LLASLHNRS---IHICHVSS 158 (344)
T ss_pred HHHHHHCCC---EEEEeCCC
Confidence 777766542 24667644
No 114
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=93.51 E-value=9.8 Score=38.78 Aligned_cols=58 Identities=10% Similarity=0.106 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecC--chHHHHHHHHHhCCCCCCcEEEEecCC--CHHHHHHHHcC
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRN--AKSDFIEIMKEYAPKLPRKGVIHSFDG--TPFQAVDSLKT 187 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~--a~~d~l~iLk~~~~~~~~~~v~H~FsG--~~~~a~~~l~~ 187 (487)
.+.|...+++|+++|+||.+|+-. +.+.+.+.++..+. ..+-||+.- +.+.++.+.+.
T Consensus 172 ~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~----~~i~H~~~l~~~~~~~~~l~~~ 233 (325)
T cd01320 172 PEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGA----ERIGHGIRAIEDPELVKRLAER 233 (325)
T ss_pred HHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCC----cccchhhccCccHHHHHHHHHc
Confidence 456889999999999999999974 34556666765643 457898876 45566666655
No 115
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=93.49 E-value=8.7 Score=40.46 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=21.3
Q ss_pred hCCCHHHHHHHHHHHHHHhcCCC
Q psy4448 385 RGVEREKLGPIIHQNTLRLFFPH 407 (487)
Q Consensus 385 kg~~~~~va~~~~~N~~rlf~~~ 407 (487)
.++++.++.+.++.|.-+++++.
T Consensus 318 ~gl~~~~al~~~T~npA~~lgl~ 340 (376)
T TIGR02318 318 EGIPLPQAVKMVTKNPARAVGLS 340 (376)
T ss_pred cCCCHHHHHHHHhHHHHHHcCCC
Confidence 48999999999999999999985
No 116
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=93.27 E-value=2.8 Score=44.38 Aligned_cols=38 Identities=5% Similarity=0.035 Sum_probs=32.3
Q ss_pred ccccHHHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCCC
Q psy4448 370 EPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLFFPH 407 (487)
Q Consensus 370 ~P~~l~~v~~~iA~ikg~~~~~va~~~~~N~~rlf~~~ 407 (487)
....+...++.+.+..+++++++.+..+.|..+++++.
T Consensus 309 s~l~l~~~v~~l~~~~~~~~~eal~~aT~npA~~lgl~ 346 (382)
T PRK11170 309 SALTMIEAVRNLVEHVGIALDEALRMATLYPARAIGVD 346 (382)
T ss_pred cHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCC
Confidence 45667777777777789999999999999999999986
No 117
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=92.93 E-value=13 Score=38.46 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCch-HHHHHHHHHhCCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNAK-SDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a~-~d~l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
.+.+++.+++|++++++|.+|+.... ....+...+.+. ..+-|+..-+.+.++.+.+.
T Consensus 192 ~~~~~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~g~----~~i~H~~~~~~~~i~~la~~ 250 (371)
T cd01296 192 LEQSRRILEAAKEAGLPVKIHADELSNIGGAELAAELGA----LSADHLEHTSDEGIAALAEA 250 (371)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEcCcCCCCHHHHHHHcCC----CeeHHhcCCCHHHHHHHHHc
Confidence 45788899999999999999997531 011233333332 35779888888877777766
No 118
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=92.88 E-value=4.2 Score=43.29 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCchHHHHHHH-----------HHhCCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIM-----------KEYAPKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iL-----------k~~~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
.+.+++..++|++ ++|+.+|+-+...++..+. .+.+.-.+.-.+.||..-+.++++.+.+.
T Consensus 206 ~e~l~~~~~~a~~-g~~i~~H~~e~~~e~~~~~~~~g~~~i~~l~~~g~l~~~~~~~H~~~l~~~~~~~la~~ 277 (418)
T cd01313 206 AEQLAALAALASE-KAPVHIHLAEQPKEVDDCLAAHGRRPVELLLDHGHLDARWCLVHATHLTDNETLLLGRS 277 (418)
T ss_pred HHHHHHHHHHHhc-CCceEEEeCCCHHHHHHHHHHcCCCHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHc
Confidence 4578888899999 9999999976554443333 33322122236889999999998888887
No 119
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=92.83 E-value=0.14 Score=52.85 Aligned_cols=124 Identities=15% Similarity=0.162 Sum_probs=83.7
Q ss_pred HHHHHHHhhhCCCCEEEEeccchHHHHHHHHHhCCCCCCCcEEEEeeCCc-----------ccccc------cc--cch-
Q psy4448 253 FRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTP-----------FQAVD------SL--KTK- 312 (487)
Q Consensus 253 F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~~-----------~~~~~------~~--k~~- 312 (487)
++.++++|+++++|+++|++++..++.++++-.... .++.|+|+|+. +.+.. .+ -..
T Consensus 151 l~~~~~~a~~~~~pi~vH~~~~~~~~~~~~~~l~~g---~~~~H~~~g~~~~~~~~~~~~~~~~~~~~~~G~~~d~~~G~ 227 (338)
T cd01307 151 LELAKKIAKEADLPLMVHIGSPPPILDEVVPLLRRG---DVLTHCFNGKPNGIVDEEGEVLPLVRRARERGVIFDVGHGT 227 (338)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHhcCC---CEEEeccCCCCCCCCCCCCcHHHHHHHHHhCCEEEEeCCCC
Confidence 779999999999999999999999999988765432 47889999864 11100 00 000
Q ss_pred --hhHHHhhhCCCCceEeccCCCCCCCCCCCcchhhHhhhhhhhhhhccCCccCCCCCCcccc-HHHHHHHHHHhhCCCH
Q psy4448 313 --ENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPAN-IVQILEIVAAVRGVER 389 (487)
Q Consensus 313 --~~~e~v~~iPldrlLlETD~P~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~P~~-l~~v~~~iA~ikg~~~ 389 (487)
.....++.+-...++.+|+++++.. ++..|.|.+ +..+++.+ ..+|++.
T Consensus 228 ~~~~~~~~~~l~~~G~~~~~lstD~~~---------------------------~~~~~~p~~~l~~~l~~l-~~~gi~~ 279 (338)
T cd01307 228 ASFSFRVARAAIAAGLLPDTISSDIHG---------------------------RNRTNGPVYALATTLSKL-LALGMPL 279 (338)
T ss_pred CchhHHHHHHHHHCCCCCeeecCCccc---------------------------cCCCCCccccHHHHHHHH-HHcCCCH
Confidence 0001111111235555555555311 133467877 57888887 5689999
Q ss_pred HHHHHHHHHHHHHhcCCC
Q psy4448 390 EKLGPIIHQNTLRLFFPH 407 (487)
Q Consensus 390 ~~va~~~~~N~~rlf~~~ 407 (487)
+++.++++.|..++|++.
T Consensus 280 ee~~~~~T~NpA~~lgl~ 297 (338)
T cd01307 280 EEVIEAVTANPARMLGLA 297 (338)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999999999984
No 120
>PLN02303 urease
Probab=92.62 E-value=1 Score=51.78 Aligned_cols=163 Identities=12% Similarity=0.122 Sum_probs=82.9
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEE-----EEECCCHHhHHHHHHHHhcCCCeEEEeecCCC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKI-----IVTGTNVEDSISSLKLAQSDERLYSTVGCHPT 77 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~i-----i~v~~~~~~~~~~~~la~~~~~v~~avGiHP~ 77 (487)
+||+|+|+..+.+. ...+..-+..+...|+..+ .+.+.++..++..++.++..+- -+|++-.
T Consensus 400 ~ID~HVHf~~Pg~~----------~eaLasGVTTai~GGtgp~pnT~ptt~t~g~e~I~~~L~aa~~~pv---n~Gf~gk 466 (837)
T PLN02303 400 GIDCHVHFICPQLA----------TEAIASGITTLVGGGTGPAHGTCATTCTPAPSHMKLMLQSTDDLPL---NFGFTGK 466 (837)
T ss_pred EEEeecCCCCCcHH----------HHHHHHhHHHHHhcCCCCCCcccCcCCCCCHHHHHHHHHhcccCCC---cEEEEcc
Confidence 79999999765331 1122222333444444321 0001135556666665555541 2222211
Q ss_pred CCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchHH---H
Q psy4448 78 RCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSD---F 154 (487)
Q Consensus 78 ~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d---~ 154 (487)
- . ...++.+.++++. .+.++. +.-||. .-...+.+.++.|+++++||.+|+.. ..+ +
T Consensus 467 G-~------~s~l~eL~eliea---Ga~GfK-~h~d~g--------vTpelL~raLe~AkelGVpVaIHAEd-LnE~G~v 526 (837)
T PLN02303 467 G-N------TAKPEGLHEIIKA---GAMGLK-LHEDWG--------TTPAAIDNCLDVAEEYDIQVTIHTDT-LNESGCV 526 (837)
T ss_pred C-c------ccCHHHHHHHHHc---CcEEEE-ECCCCC--------CCHHHHHHHHHHHHHcCCEEEEecCc-ccccchH
Confidence 0 0 0124566666543 355554 111221 11568899999999999999999877 222 3
Q ss_pred HHHHHHhCCCCCCcEEEEecCCCHHHHHHHHcCc--cchhHhhhcCCCceeeccCCCCC
Q psy4448 155 IEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKTK--ENLETVKSIPEDRLLLETDCPWC 211 (487)
Q Consensus 155 l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~~--~g~e~v~~iP~driLlETD~P~l 211 (487)
-..++.++.+ -+|.|-. ...+ -.=++++.+...++|--|-.|-.
T Consensus 527 E~t~~a~G~R-----pIh~~h~--------~Ga~gghapdi~~~~~~~nvlpsstnpt~ 572 (837)
T PLN02303 527 EHSIAAFKGR-----TIHTYHS--------EGAGGGHAPDIIKVCGVKNVLPSSTNPTR 572 (837)
T ss_pred HHHHHHHCCC-----hHHHHHh--------cCCCCCCCcHHHHhcCCCCccCCCCCCCC
Confidence 3455555432 2333210 0000 01266777777777777776655
No 121
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=92.62 E-value=1.1 Score=47.50 Aligned_cols=184 Identities=15% Similarity=0.120 Sum_probs=99.4
Q ss_pred EEEecccCCCcc-cccccccCCCCCCCCHHHHHHHHHhcCCCEEEEEC--CCHHhHHHHHHHHhcC---CCeEEEeecC-
Q psy4448 3 YIDIGANLKDAM-YEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTG--TNVEDSISSLKLAQSD---ERLYSTVGCH- 75 (487)
Q Consensus 3 ~iD~H~HL~~~~-f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~--~~~~~~~~~~~la~~~---~~v~~avGiH- 75 (487)
+||+|+|..... |. ....+++..+.+.+...||+.++-.. ...++..+.++..+++ +.-..-+|+|
T Consensus 58 fID~HvHg~~g~~~~-------~~~~e~~~~~~~~~~~~GvTt~l~t~~t~~~~~~~~~l~~~~~~~~~~~~a~~lG~Hl 130 (380)
T TIGR00221 58 FIDIHIHGCGGVDTN-------DASFETLEIMSERLPKSGCTSFLPTLITQPDENIKQAVKNMREYLAKEKNAQALGLHL 130 (380)
T ss_pred eeeeeeccccCcCCC-------CCCHHHHHHHHHHHHhcCeeEEeeeccCCCHHHHHHHHHHHHHHHhccCCceeeeEee
Confidence 899999985321 10 00124566777788889998877443 3345555554433221 1223467887
Q ss_pred --CCCCCCcCC-Cchh-----hHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEE-E
Q psy4448 76 --PTRCSEFEN-DPEG-----YLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFL-H 146 (487)
Q Consensus 76 --P~~~~~~~~-~~~~-----~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViI-H 146 (487)
|+....... ..++ ..++++++++.....+..| =|- + + .+ --...++.+.+.+.-|++ |
T Consensus 131 EGPfi~~~~~Gah~~~~i~~p~~~~~~~~~~~~~~~i~~v---TlA--P-E---~~----~~~~~i~~l~~~gi~vs~GH 197 (380)
T TIGR00221 131 EGPFLSPEKKGAHPPEYIREPDVELFKKFLCEAGGVITKV---TLA--P-E---ED----QHFELIRHLKDAGIIVSAGH 197 (380)
T ss_pred ecCcCChhhcCCCCHHHhhCcCHHHHHHHHHhcCCCEEEE---EEC--C-C---CC----ChHHHHHHHHHCCeEEEeeC
Confidence 554433210 0111 2466777776421222221 111 1 1 11 113566777888887775 8
Q ss_pred ecCchHHHHHHHHHhCCCCCCcEEEEecCCCHHHH-------HHHHcCc--------cch-------hH-hhhcCCCcee
Q psy4448 147 CRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQA-------VDSLKTK--------ENL-------ET-VKSIPEDRLL 203 (487)
Q Consensus 147 ~r~a~~d~l~iLk~~~~~~~~~~v~H~FsG~~~~a-------~~~l~~~--------~g~-------e~-v~~iP~driL 203 (487)
|--.++++.+.++ .+. +.+-|.|++-...- ...+... .|. ++ .+.-+.|||+
T Consensus 198 s~A~~~~~~~a~~-~Ga----~~~THlfNaM~~~~hR~pg~vga~l~~~~~~~elI~Dg~Hv~p~~~~~~~r~kg~~~~~ 272 (380)
T TIGR00221 198 TNATYELAKAAFK-AGA----THATHLYNAMSPIHHREPGVIGAVLDHDDVYTEIIADGIHIHPLNIRLAKKLKGDSKLC 272 (380)
T ss_pred CCCCHHHHHHHHH-cCC----CeeeeeccCCCCcCCCCCcHHHHHhcCCCcEEEEEcCCCcCCHHHHHHHHHhcCCCcEE
Confidence 7767777776664 333 57889998764332 2233221 111 22 3445679999
Q ss_pred eccCCCCC
Q psy4448 204 LETDCPWC 211 (487)
Q Consensus 204 lETD~P~l 211 (487)
+=|||=-.
T Consensus 273 lvtDa~~~ 280 (380)
T TIGR00221 273 LVTDSMAA 280 (380)
T ss_pred EEeccccc
Confidence 99998543
No 122
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=92.54 E-value=1.3 Score=47.51 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=70.7
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC------CHHhHHHHHHHHhcCC--CeEEEeec
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT------NVEDSISSLKLAQSDE--RLYSTVGC 74 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~------~~~~~~~~~~la~~~~--~v~~avGi 74 (487)
+||.|+|+..+-+. +.++++.--+.|..-|++.++.+.. +++.++..++.++... ++.+..|+
T Consensus 55 ~ID~HVH~repg~~---------~ke~~~tgs~AAa~GG~Ttv~dmPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~i 125 (430)
T COG0044 55 LVDLHVHFREPGFE---------HKETFETGSRAAAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKGKSVVDYAFYGGL 125 (430)
T ss_pred eeEEEEecCCCCcc---------hhhhHHHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHhhccceeEEEEEEEE
Confidence 89999999986431 2345666666667778887776532 4666666666665332 34444454
Q ss_pred CCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc
Q psy4448 75 HPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA 150 (487)
Q Consensus 75 HP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a 150 (487)
=.+... .. .+.++. . ++|.--|. +.+....-..++++.++.|++++.++++|+.+.
T Consensus 126 t~~~~~--------~~-~~~~~~-------~---~~g~~~F~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Ed~ 181 (430)
T COG0044 126 TKGNLG--------KL-ELTERG-------V---EAGFKGFM-DDSTGALDDDVLEEALEYAAELGALILVHAEDD 181 (430)
T ss_pred eccccc--------hh-hhhhhh-------h---ccceEEEe-cCCcCcCCHHHHHHHHHHHHhcCCeEEEecCCh
Confidence 332211 01 111111 0 33332121 222234567889999999999999999999874
No 123
>PRK08418 chlorohydrolase; Provisional
Probab=91.67 E-value=3.1 Score=44.23 Aligned_cols=60 Identities=13% Similarity=0.063 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCchHHHHHH---------------------------HHHhCCCCCCcEEEEecCCCH
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEI---------------------------MKEYAPKLPRKGVIHSFDGTP 178 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a~~d~l~i---------------------------Lk~~~~~~~~~~v~H~FsG~~ 178 (487)
.+.+++..++|+++++|+.+|.-....|.-.+ |...+. +...+.||-.-+.
T Consensus 189 ~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~~~~~~~~~~~~~~~~~~pv~~l~~~g~--~~~~~~H~~~~~~ 266 (408)
T PRK08418 189 PILAKKALQLAKKENLLVSTHFLESKAEREWLEESKGWFKKFFEKFLKEPKPLYTPKEFLELFKG--LRTLFTHCVYASE 266 (408)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCchhhhhhhhcccccccCCHHHHHHHhCC--CCeEEEecccCCH
Confidence 45799999999999999999998866554332 333321 1246789988898
Q ss_pred HHHHHHHcC
Q psy4448 179 FQAVDSLKT 187 (487)
Q Consensus 179 ~~a~~~l~~ 187 (487)
++++.+.+.
T Consensus 267 ~di~~la~~ 275 (408)
T PRK08418 267 EELEKIKSK 275 (408)
T ss_pred HHHHHHHHc
Confidence 898888877
No 124
>KOG2584|consensus
Probab=91.55 E-value=0.97 Score=47.98 Aligned_cols=50 Identities=18% Similarity=0.310 Sum_probs=40.9
Q ss_pred cCCccccCCCChhhhHHHHHHHHHHhhhCCCCEE-EEe-ccchHHHHHHHHH
Q psy4448 235 WKPDKMVKSRNEPANIVYFRKQLDLSVTHKLPLF-LHC-RNAKSDFIEIMKE 284 (487)
Q Consensus 235 ~~~~~~~~~~n~P~Q~~~F~~ql~lA~~~~lPl~-iH~-r~a~~~~l~il~~ 284 (487)
.+|+++--+|++..-.+...+-+.+|...|-||. +|. -++..+.+...++
T Consensus 217 tgPEgh~lSRPee~EaEA~~rai~ia~~~ncPlyvvhVmsksaa~~Ia~aRk 268 (522)
T KOG2584|consen 217 TGPEGHELSRPEELEAEATNRAITIARQANCPLYVVHVMSKSAADAIALARK 268 (522)
T ss_pred cCcccccccCchhhhHHHHHHHHHHHHhcCCCcceEEEeehhHHHHHHHHHh
Confidence 4688888899999999999999999999999987 665 4555666666555
No 125
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=91.23 E-value=8.4 Score=41.47 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHH-----------HhCCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMK-----------EYAPKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk-----------~~~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
.+.+++..++| ++++|+.+|+-+...++...++ +.+.-.+.-.+.||..-+.++++.+.+.
T Consensus 215 ~e~l~~~~~~A-~~g~~i~~H~~e~~~e~~~~~~~~g~~~~~~l~~~g~l~~~~~l~H~~~l~~~d~~~la~~ 286 (456)
T PRK09229 215 PDQLAAVLALA-APDGPVHIHIAEQTKEVDDCLAWSGARPVEWLLDHAPVDARWCLVHATHLTDAETARLARS 286 (456)
T ss_pred HHHHHHHHHHh-cCCCceEEEeCCCHHHHHHHHHHcCCCHHHHHHHcCCCCCCeEEEeeccCCHHHHHHHHHc
Confidence 35788889999 9999999999765444444433 3322122236789999999999988887
No 126
>PRK08392 hypothetical protein; Provisional
Probab=90.85 E-value=13 Score=35.72 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=26.3
Q ss_pred EEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEE
Q psy4448 4 IDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVT 48 (487)
Q Consensus 4 iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v 48 (487)
||.|+|..... | ...+++++++|.+.|++.+.+.
T Consensus 1 ~D~H~HT~~sd------~-----~~~~~e~v~~A~~~Gl~~i~iT 34 (215)
T PRK08392 1 MDLHTHTVYSD------G-----IGSVRDNIAEAERKGLRLVGIS 34 (215)
T ss_pred CccccCCCCcC------C-----cCCHHHHHHHHHHcCCCEEEEc
Confidence 69999987531 2 4679999999999999866554
No 127
>PRK14085 imidazolonepropionase; Provisional
Probab=90.63 E-value=24 Score=36.91 Aligned_cols=25 Identities=8% Similarity=-0.092 Sum_probs=21.4
Q ss_pred HhhCCCHHHHHHHHHHHHHHhcCCC
Q psy4448 383 AVRGVEREKLGPIIHQNTLRLFFPH 407 (487)
Q Consensus 383 ~ikg~~~~~va~~~~~N~~rlf~~~ 407 (487)
...+++.+++.+..+.|..+++++.
T Consensus 320 ~~~~l~~~~al~~aT~~~A~~lg~~ 344 (382)
T PRK14085 320 RQMGMTPAEAVWAATAGGARALRRD 344 (382)
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 3457999999999999999999885
No 128
>PRK08609 hypothetical protein; Provisional
Probab=90.10 E-value=6.6 Score=43.81 Aligned_cols=198 Identities=13% Similarity=0.154 Sum_probs=108.3
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC----------CHHhHHH----HHHHHhcCCCe
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT----------NVEDSIS----SLKLAQSDERL 68 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~----------~~~~~~~----~~~la~~~~~v 68 (487)
.+|.|||..... | ..++++++++|.+.|+..+++.-- +.+++.. +.++.++++.+
T Consensus 335 ~~DlH~HT~~sD------g-----~~sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i 403 (570)
T PRK08609 335 QGDLHMHTTWSD------G-----AFSIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEI 403 (570)
T ss_pred cCCccccCCCCC------C-----CCCHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 579999987421 2 567999999999999998776522 2233332 23345556554
Q ss_pred EEEeec----CCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEee--CCCCCCCCCCChHHHHHHHHHHHHHhhhCCCC
Q psy4448 69 YSTVGC----HPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEF--GLDYDRVQYCPVETQLKYFRKQLDLSVTHKLP 142 (487)
Q Consensus 69 ~~avGi----HP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEI--GLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lP 142 (487)
..-.|+ .|... .+...+++.. -. ..||++ +.+. + ..+++++.++++..-..+
T Consensus 404 ~Il~GiEv~i~~~g~----------~d~~~~~L~~--~D-~vI~SvH~~~~~------~---~~~~~~~l~~a~~~~~~d 461 (570)
T PRK08609 404 DILSGIEMDILPDGS----------LDYDDEVLAE--LD-YVIAAIHSSFSQ------S---EEEIMKRLENACRNPYVR 461 (570)
T ss_pred eEEEEEEEeecCCcc----------hhhcHHHHHh--hC-EEEEEeecCCCC------C---HHHHHHHHHHHhcCCCce
Confidence 444444 33111 1112223332 12 347777 4321 1 234466777776655678
Q ss_pred EEEEec-------Cc----hHHHHHHHHHhCCCC--CCcEEEEecCCCHHHHHHHHcCccchhHhhhcCCCceeeccCCC
Q psy4448 143 LFLHCR-------NA----KSDFIEIMKEYAPKL--PRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPEDRLLLETDCP 209 (487)
Q Consensus 143 ViIH~r-------~a----~~d~l~iLk~~~~~~--~~~~v~H~FsG~~~~a~~~l~~~~g~e~v~~iP~driLlETD~P 209 (487)
|+=|-- .. .+++++.+++.+... +..+. ...-+.+.++.+.+. |. .+.+.||+=
T Consensus 462 ILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~~lEINa~~~--r~~~~~~~~~~~~e~--Gv---------~i~igSDAH 528 (570)
T PRK08609 462 LIAHPTGRLIGRRDGYDVNIDQLIELAKETNTALELNANPN--RLDLSAEHLKKAQEA--GV---------KLAINTDAH 528 (570)
T ss_pred EEECCCccccccCCCchHHHHHHHHHHHHhCCEEEEcCCcc--ccCccHHHHHHHHHc--CC---------EEEEECCCC
Confidence 888874 22 245566655554211 00111 111245666666666 43 478888873
Q ss_pred CCCCCCCCcccchhcccchhhhhhccCCccccCCCChhhhHHHHHHHHHHhhhCCCCE--EEEeccchHHHHHHHH
Q psy4448 210 WCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVYFRKQLDLSVTHKLPL--FLHCRNAKSDFIEIMK 283 (487)
Q Consensus 210 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~P~Q~~~F~~ql~lA~~~~lPl--~iH~r~a~~~~l~il~ 283 (487)
.|.+...|+.-+.+|++.++|- +|- ....+++++.|+
T Consensus 529 ------------------------------------~~~~l~~~~~~v~~ar~~~~~~~~v~N-~~~~~~~~~~~~ 567 (570)
T PRK08609 529 ------------------------------------HTEMLDDMKYGVATARKGWIQKDRVIN-TWSREEFKDFIK 567 (570)
T ss_pred ------------------------------------ChhhhCcHHHHHHHHHHcCCCHHHccc-CCCHHHHHHHHh
Confidence 2445566888889999999882 222 222445555554
No 129
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=89.86 E-value=9.6 Score=39.86 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=37.5
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC------CHHhHHHHHHHHhc
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT------NVEDSISSLKLAQS 64 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~------~~~~~~~~~~la~~ 64 (487)
+||.|+|+.++-+ ...+|++..-+.|...||+.++.+.. +++.++...+.++.
T Consensus 8 ~iD~HvH~r~pg~---------~~~ed~~s~t~aA~~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~ 66 (361)
T cd01318 8 VIDIHVHFREPGL---------TYKEDFVSGSRAAAAGGVTTVMDMPNTKPPTTTAEALYEKLRLAAA 66 (361)
T ss_pred eeEeeecCCCCCC---------CccCcHHHHHHHHHcCCCEEEEECCCCCCCCCcHHHHHHHHHHhcc
Confidence 7999999987532 12578888888888999998887632 35556555556554
No 130
>PRK09358 adenosine deaminase; Provisional
Probab=89.19 E-value=29 Score=35.69 Aligned_cols=86 Identities=17% Similarity=0.233 Sum_probs=51.6
Q ss_pred HHHHHHHHHh-cCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc--hHHHHHHHHHhCCCCC
Q psy4448 90 LQSLDKIIKE-GGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA--KSDFIEIMKEYAPKLP 166 (487)
Q Consensus 90 l~~L~~ll~~-~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a--~~d~l~iLk~~~~~~~ 166 (487)
.+.+++++.. +.+.+++||=.|-.. .. ..+.|+..+++|+++|+|+.+|+-.. ..++.+.+...+.
T Consensus 152 ~~~~~~~~~~~~~~~vvg~~l~g~e~---~~-----~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~lg~--- 220 (340)
T PRK09358 152 ARELEALAARYRDDGVVGFDLAGDEL---GF-----PPSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDELGA--- 220 (340)
T ss_pred HHHHHHHHHHhcCCcEEEEeCCCcCC---CC-----CHHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHcCC---
Confidence 4445555542 223466664444332 11 23458899999999999999999753 3456666655543
Q ss_pred CcEEEEecCC--CHHHHHHHHcC
Q psy4448 167 RKGVIHSFDG--TPFQAVDSLKT 187 (487)
Q Consensus 167 ~~~v~H~FsG--~~~~a~~~l~~ 187 (487)
..+-||+.- +.+.++.+.+.
T Consensus 221 -~ri~Hg~~l~~~~~~~~~l~~~ 242 (340)
T PRK09358 221 -ERIGHGVRAIEDPALMARLADR 242 (340)
T ss_pred -cccchhhhhccCHHHHHHHHHc
Confidence 357788764 34455555544
No 131
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=88.94 E-value=3.2 Score=45.86 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhhCCCCEEEEec-------CchH---HHHHHHHHhCCC-----C-CCcEEEEecCCC
Q psy4448 125 QLKYFRKQLDLSVTHKLPLFLHCR-------NAKS---DFIEIMKEYAPK-----L-PRKGVIHSFDGT 177 (487)
Q Consensus 125 Q~~vF~~qL~LA~el~lPViIH~r-------~a~~---d~l~iLk~~~~~-----~-~~~~v~H~FsG~ 177 (487)
-+++.+...+.+.++++|..||.+ +..+ +++++.+..+.. . -.-+-||+|.|.
T Consensus 207 p~~ii~~l~~~~~~lg~ph~iH~h~nnlg~pgn~~~t~~t~~~~~~~~~~~~~~~~h~tH~qfhsyg~~ 275 (541)
T cd01304 207 PREILKGLAEANEELGLPHSIHVHCNNLGVPGNYETTLETMKAAEGVKPDPRRQVLHLTHVQFHSYGGT 275 (541)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEccccCCCCCcHHHHHHHHHHhhcCCCccccceeEeeeeeEEeeccC
Confidence 467888999999999999999988 4455 444455454321 0 013577999887
No 132
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=88.45 E-value=23 Score=38.22 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhCCCCEEEEecCchHHHHH-----------HHHHhCCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 128 YFRKQLDLSVTHKLPLFLHCRNAKSDFIE-----------IMKEYAPKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 128 vF~~qL~LA~el~lPViIH~r~a~~d~l~-----------iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
.+++..+ |+++++|+.+|+-....+... .+.+.+.-.+.-.+.||..-+.++++.+-+.
T Consensus 217 ~l~~~~~-a~~~g~~v~~H~~e~~~e~~~~~~~~G~~~v~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~ 286 (455)
T TIGR02022 217 QLAAVLQ-ASDRQAPVHIHVAEQQKEVDDCLAWSGRRPVEWLLDHGPVDARWCLVHATHLTDEETALLARS 286 (455)
T ss_pred HHHHHHH-HHhCCCceEEEECCChHHHHHHHHHhCCCHHHHHHHcCCCCCCEEEEEeecCCHHHHHHHHHc
Confidence 4555666 678999999999766555433 3444332222235789999898898888777
No 133
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=87.19 E-value=43 Score=35.31 Aligned_cols=32 Identities=13% Similarity=0.026 Sum_probs=25.9
Q ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHhcCCCC
Q psy4448 377 ILEIVAAVRGVEREKLGPIIHQNTLRLFFPHE 408 (487)
Q Consensus 377 v~~~iA~ikg~~~~~va~~~~~N~~rlf~~~~ 408 (487)
....++...+++++++.+..+.|..+++++..
T Consensus 314 ~~~~~~~~~gls~~~al~~~T~npA~~lgl~~ 345 (383)
T PRK15446 314 AAFRLADDGGLDLPQAVALVTANPARAAGLDD 345 (383)
T ss_pred HHHHHHHhcCCCHHHHHHHHhHHHHHHcCCCC
Confidence 34445556689999999999999999999853
No 134
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=82.70 E-value=43 Score=34.17 Aligned_cols=144 Identities=17% Similarity=0.193 Sum_probs=83.4
Q ss_pred CHHhHHHHHHHHhcCCC-eEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCE-EEEEeeCCCCCCC---CCCChHHH
Q psy4448 51 NVEDSISSLKLAQSDER-LYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKV-VAFGEFGLDYDRV---QYCPVETQ 125 (487)
Q Consensus 51 ~~~~~~~~~~la~~~~~-v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~v-vaIGEIGLD~~~~---~~~~~e~Q 125 (487)
..+...++++.+.+++. +-.+++.+|..+. ++.++.|.++... .+ ..| |+|+.-..- ..-.+..-
T Consensus 92 ~~~~L~~l~~~i~~~~~~~~isi~trpd~l~------~e~l~~L~~l~~~---G~~~~i-~lGlQS~~d~~L~~i~Rg~t 161 (302)
T TIGR01212 92 PVEVLKEMYEQALSYDDVVGLSVGTRPDCVP------DEVLDLLAEYVER---GYEVWV-ELGLQTAHDKTLKKINRGHD 161 (302)
T ss_pred CHHHHHHHHHHHhCCCCEEEEEEEecCCcCC------HHHHHHHHHhhhC---CceEEE-EEccCcCCHHHHHHHcCcCh
Confidence 45667777777776765 5678899997764 3446666665432 34 456 789885420 00011223
Q ss_pred HHHHHHHHHHhhhCCCCEEEEec-----CchHH---HHHHHHHhCCCCCCcEEEEe---cCCCHHHHHHHHcCcc-----
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCR-----NAKSD---FIEIMKEYAPKLPRKGVIHS---FDGTPFQAVDSLKTKE----- 189 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r-----~a~~d---~l~iLk~~~~~~~~~~v~H~---FsG~~~~a~~~l~~~~----- 189 (487)
.+-+.+.++.+++.+..|..|.- +..++ +++.+.+.+.. .+-+|. +.|+. ..+.+ ..|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI~GlPget~e~~~~t~~~l~~l~~d---~i~i~~l~~~pgT~-L~~~~-~~g~~~~~~ 236 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVSLLDVD---GIKIHPLHVVKGTK-MAKMY-EKGELKTLS 236 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEEECCCCCCHHHHHHHHHHHHhcCCC---EEEEEEEEecCCCH-HHHHH-HcCCCCCCC
Confidence 34578899999999999999863 23344 44455554432 344444 45654 33332 2211
Q ss_pred -------chhHhhhcCCCceeec--cCCC
Q psy4448 190 -------NLETVKSIPEDRLLLE--TDCP 209 (487)
Q Consensus 190 -------g~e~v~~iP~driLlE--TD~P 209 (487)
..++++.+|.+-++.- .|+|
T Consensus 237 ~~e~~~~~~~~l~~l~~~~~i~Rl~~~~~ 265 (302)
T TIGR01212 237 LEEYISLACDFLEHLPPEVVIHRISGDAP 265 (302)
T ss_pred HHHHHHHHHHHHHhCCcCeEEEEecCCCC
Confidence 2366888888766544 3444
No 135
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=81.70 E-value=5.3 Score=40.81 Aligned_cols=102 Identities=14% Similarity=0.235 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHhcCCCEEEEECCCHHh--------HHHHHHHHhcCCCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHh
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTGTNVED--------SISSLKLAQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKE 99 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~~~~~~--------~~~~~~la~~~~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~ 99 (487)
..+...|.++.++||+.+++++.|+.. ...++++.++......+++.||.--.+. .+.+ ..+..+..+
T Consensus 97 ~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~~~~~i~va~yPeghp~~-~~~~---~dl~~Lk~K 172 (296)
T PRK09432 97 DELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSVADFDISVAAYPEVHPEA-KSAQ---ADLINLKRK 172 (296)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHHhCCCccceeeCCCCCCCC-CCHH---HHHHHHHHH
Confidence 356678888999999999999876421 1145666666555566778888322221 1112 233332222
Q ss_pred cCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCC--CCEE
Q psy4448 100 GGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHK--LPLF 144 (487)
Q Consensus 100 ~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~--lPVi 144 (487)
+ +.|-||.- .+... -.+.|.+.++.+++.+ +||+
T Consensus 173 ----~----~aGA~~~i-TQ~~F--d~~~~~~f~~~~~~~Gi~vPIi 208 (296)
T PRK09432 173 ----V----DAGANRAI-TQFFF--DVESYLRFRDRCVSAGIDVEIV 208 (296)
T ss_pred ----H----HcCCCeee-ccccc--chHHHHHHHHHHHHcCCCCCEE
Confidence 1 34557543 22222 2456777777777665 7766
No 136
>PRK05588 histidinol-phosphatase; Provisional
Probab=81.56 E-value=30 Score=34.16 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=25.5
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEE
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKI 45 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~i 45 (487)
++|.|+|.....- | ...+++.+++|.+.|+..+
T Consensus 1 ~~D~H~HT~~s~~-----~-----~~~~ee~v~~A~~~Gl~~~ 33 (255)
T PRK05588 1 MFDTHIHTEFSTD-----S-----KMKIEEAIKKAKENNLGII 33 (255)
T ss_pred CeeecccCCCCCC-----c-----ccCHHHHHHHHHHcCCCEE
Confidence 5899999875311 2 5679999999999999844
No 137
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=79.41 E-value=67 Score=31.97 Aligned_cols=139 Identities=14% Similarity=0.123 Sum_probs=80.5
Q ss_pred CHHHHHHHHHhcCCCEEEEECC-------CHHhHHHHHHHHhcC--CCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHh
Q psy4448 29 DIDHVLNRAWNAGLEKIIVTGT-------NVEDSISSLKLAQSD--ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKE 99 (487)
Q Consensus 29 d~~~vl~ra~~~GV~~ii~v~~-------~~~~~~~~~~la~~~--~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~ 99 (487)
.+...++.+.+.||..+++.|+ +.++..++++.+.+. +.+-..+|+-... ..+.++ +.+.+.+
T Consensus 19 ~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~-------~~~~i~-~a~~a~~ 90 (281)
T cd00408 19 ALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANS-------TREAIE-LARHAEE 90 (281)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCcc-------HHHHHH-HHHHHHH
Confidence 3456778888899999998876 466777777665432 3454556664322 122333 3333443
Q ss_pred cCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc------hHHHHHHHHHhCCCCCCcEEEEe
Q psy4448 100 GGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA------KSDFIEIMKEYAPKLPRKGVIHS 173 (487)
Q Consensus 100 ~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a------~~d~l~iLk~~~~~~~~~~v~H~ 173 (487)
-.+.+| -+...+|. . ..|..+++..-++|...++|++|+..-. .-+++.-|.+.+. -.-+--
T Consensus 91 --~Gad~v-~v~pP~y~-~----~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~----v~giK~ 158 (281)
T cd00408 91 --AGADGV-LVVPPYYN-K----PSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAEHPN----IVGIKD 158 (281)
T ss_pred --cCCCEE-EECCCcCC-C----CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhcCCC----EEEEEe
Confidence 234444 34455544 1 2367788888888888999999986542 2244444433221 123333
Q ss_pred cCCCHHHHHHHHcC
Q psy4448 174 FDGTPFQAVDSLKT 187 (487)
Q Consensus 174 FsG~~~~a~~~l~~ 187 (487)
-+++.....++++.
T Consensus 159 s~~d~~~~~~~~~~ 172 (281)
T cd00408 159 SSGDLDRLTRLIAL 172 (281)
T ss_pred CCCCHHHHHHHHHh
Confidence 45777777776654
No 138
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=79.05 E-value=43 Score=34.10 Aligned_cols=137 Identities=9% Similarity=0.036 Sum_probs=80.5
Q ss_pred HHHHHHHHHhcCCCEEEEECC-------CHHhHHHHHHHHhcC--CCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhc
Q psy4448 30 IDHVLNRAWNAGLEKIIVTGT-------NVEDSISSLKLAQSD--ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEG 100 (487)
Q Consensus 30 ~~~vl~ra~~~GV~~ii~v~~-------~~~~~~~~~~la~~~--~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~ 100 (487)
+...++...+.||+.+++.|+ +.++..++++.+.+. +.+-.-+|+-. . ..+.++..+.. .+
T Consensus 30 l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~-------t~~~i~~~~~a-~~- 99 (303)
T PRK03620 30 YREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-G-------TAQAIEYAQAA-ER- 99 (303)
T ss_pred HHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-C-------HHHHHHHHHHH-HH-
Confidence 445777788899999998876 577777777755332 33333334421 1 12344444433 33
Q ss_pred CCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCch---HHHHHHHH-HhCCCCCCcEEEEecCC
Q psy4448 101 GKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAK---SDFIEIMK-EYAPKLPRKGVIHSFDG 176 (487)
Q Consensus 101 ~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~---~d~l~iLk-~~~~~~~~~~v~H~FsG 176 (487)
-.+.+| -+--+||. . ..|..++...-++|...++||+|..+-.. -+++.-|. +.+. ..+| .--+|
T Consensus 100 -~Gadav-~~~pP~y~-~----~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~pn---i~gi-K~s~~ 168 (303)
T PRK03620 100 -AGADGI-LLLPPYLT-E----APQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLAERCPN---LVGF-KDGVG 168 (303)
T ss_pred -hCCCEE-EECCCCCC-C----CCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhCCC---EEEE-EeCCC
Confidence 134444 45556554 1 13677888888888888999998875532 24444443 4432 1233 33478
Q ss_pred CHHHHHHHHcC
Q psy4448 177 TPFQAVDSLKT 187 (487)
Q Consensus 177 ~~~~a~~~l~~ 187 (487)
+.....++++.
T Consensus 169 d~~~~~~~~~~ 179 (303)
T PRK03620 169 DIELMQRIVRA 179 (303)
T ss_pred CHHHHHHHHHH
Confidence 88777776643
No 139
>PRK08123 histidinol-phosphatase; Reviewed
Probab=79.00 E-value=4.9 Score=40.23 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=29.1
Q ss_pred CcEEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEE
Q psy4448 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVT 48 (487)
Q Consensus 1 m~~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v 48 (487)
||++|.|+|...... | ....+++.+++|.+.|+..+...
T Consensus 1 ~m~~D~H~HT~~s~h-----~----~~~~~e~~v~~Ai~~Gl~~i~~t 39 (270)
T PRK08123 1 MMKRDGHTHTPFCPH-----G----SKDDLEAYIERAIELGFTEITFT 39 (270)
T ss_pred CCccccccCCCCCCC-----C----CCCCHHHHHHHHHHcCCcEEEEe
Confidence 789999999864311 0 01468999999999999877654
No 140
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=78.96 E-value=15 Score=37.31 Aligned_cols=102 Identities=21% Similarity=0.232 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHhcCCCEEEEECCCHH--------------hHHHHHHHHhc-CC-CeEEEeecCCCCCCCcCCCchhhHH
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTGTNVE--------------DSISSLKLAQS-DE-RLYSTVGCHPTRCSEFENDPEGYLQ 91 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~~~~~--------------~~~~~~~la~~-~~-~v~~avGiHP~~~~~~~~~~~~~l~ 91 (487)
..+.+.|.++.++||+.+++++.|+. ....++++.++ ++ .+..+++.||..-.+.. +.+.
T Consensus 74 ~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~-~~~~--- 149 (281)
T TIGR00677 74 EMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAE-SVEL--- 149 (281)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCC-CHHH---
Confidence 35777888888999999888877652 12234444443 34 37788888885433221 1111
Q ss_pred HHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhC--CCCEE
Q psy4448 92 SLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTH--KLPLF 144 (487)
Q Consensus 92 ~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el--~lPVi 144 (487)
.+..+..+ + +.|-||.- .+... ..+.|.+.++.+++. +.||+
T Consensus 150 d~~~L~~K----i----~aGA~f~i-TQ~~F--d~~~~~~f~~~~~~~gi~~PIi 193 (281)
T TIGR00677 150 DLKYLKEK----V----DAGADFII-TQLFY--DVDNFLKFVNDCRAIGIDCPIV 193 (281)
T ss_pred HHHHHHHH----H----HcCCCEee-cccee--cHHHHHHHHHHHHHcCCCCCEE
Confidence 23333332 1 36777643 32222 235566666666654 56664
No 141
>PRK07945 hypothetical protein; Provisional
Probab=78.33 E-value=76 Score=32.96 Aligned_cols=61 Identities=15% Similarity=0.031 Sum_probs=39.5
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC----------CHHh----HHHHHHHHhcCCCe
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT----------NVED----SISSLKLAQSDERL 68 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~----------~~~~----~~~~~~la~~~~~v 68 (487)
.+|.|+|..... | ...+++++++|.+.|+..+.+.-- +.++ +..+.++.++|+.+
T Consensus 97 ~~D~H~HT~~Sd------g-----~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I 165 (335)
T PRK07945 97 RGDLHTHSDWSD------G-----GSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPF 165 (335)
T ss_pred hhhcccccCCCC------C-----CCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCc
Confidence 579999987531 2 567999999999999987765422 1222 22333455667666
Q ss_pred EEEeec
Q psy4448 69 YSTVGC 74 (487)
Q Consensus 69 ~~avGi 74 (487)
..-.|+
T Consensus 166 ~Il~Gi 171 (335)
T PRK07945 166 RILTGI 171 (335)
T ss_pred eEEEEe
Confidence 555665
No 142
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=77.88 E-value=60 Score=30.18 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=61.4
Q ss_pred CHHHHHHHHHhcCCCEEEEECCCHHhHHHHHH-HHhcCCCeEEEee-cCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEE
Q psy4448 29 DIDHVLNRAWNAGLEKIIVTGTNVEDSISSLK-LAQSDERLYSTVG-CHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVA 106 (487)
Q Consensus 29 d~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~-la~~~~~v~~avG-iHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vva 106 (487)
=+..+++.+...|. ++..+|.+++..+++.+ +.++||++.. +| .||.... ++ .+.+.+.++...+.++.
T Consensus 34 l~~~ll~~~~~~~~-~v~llG~~~~~~~~~~~~l~~~yp~l~i-~g~~~g~~~~------~~-~~~i~~~I~~~~pdiv~ 104 (171)
T cd06533 34 LMPALLELAAQKGL-RVFLLGAKPEVLEKAAERLRARYPGLKI-VGYHHGYFGP------EE-EEEIIERINASGADILF 104 (171)
T ss_pred HHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHHHHHHCCCcEE-EEecCCCCCh------hh-HHHHHHHHHHcCCCEEE
Confidence 35578888888775 57788999999888764 5677899764 46 5665432 11 22344555555578888
Q ss_pred EEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEe
Q psy4448 107 FGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHC 147 (487)
Q Consensus 107 IGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~ 147 (487)
|| .|- ..|+.+..+ ....++.+|++-+
T Consensus 105 vg-lG~----------PkQE~~~~~---~~~~l~~~v~~~v 131 (171)
T cd06533 105 VG-LGA----------PKQELWIAR---HKDRLPVPVAIGV 131 (171)
T ss_pred EE-CCC----------CHHHHHHHH---HHHHCCCCEEEEe
Confidence 75 333 357776655 3344467777765
No 143
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=77.34 E-value=2.3 Score=41.32 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=26.9
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHH---HHHHHHhcCCCEEEEECC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDH---VLNRAWNAGLEKIIVTGT 50 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~---vl~ra~~~GV~~ii~v~~ 50 (487)
|||+|||+-..-- -| ..++++ +++.|.++||+.||..+-
T Consensus 1 MIDIH~HIlp~iD----DG-----p~s~eesl~ml~~A~~qGvt~iVaTsH 42 (254)
T COG4464 1 MIDIHSHILPDID----DG-----PKSLEESLAMLREAVRQGVTKIVATSH 42 (254)
T ss_pred CccccccccCCCC----CC-----CCcHHHHHHHHHHHHHcCceEEeeccc
Confidence 6999999965321 12 344444 677888999999987653
No 144
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=77.15 E-value=69 Score=32.45 Aligned_cols=136 Identities=13% Similarity=0.152 Sum_probs=80.6
Q ss_pred CHHHHHHHHHhcCCCEEEEECC-------CHHhHHHHHHHHhcC--CC--eEEEeecCCCCCCCcCCCchhhHHHHHHHH
Q psy4448 29 DIDHVLNRAWNAGLEKIIVTGT-------NVEDSISSLKLAQSD--ER--LYSTVGCHPTRCSEFENDPEGYLQSLDKII 97 (487)
Q Consensus 29 d~~~vl~ra~~~GV~~ii~v~~-------~~~~~~~~~~la~~~--~~--v~~avGiHP~~~~~~~~~~~~~l~~L~~ll 97 (487)
.+..+++...+.||+.+++.|+ +.++..++++.+.+. .+ +++.+| + . . ++.++..+ .+
T Consensus 27 ~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~-~-~-t-------~~ai~~a~-~a 95 (296)
T TIGR03249 27 AYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG-G-N-T-------SDAIEIAR-LA 95 (296)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-c-c-H-------HHHHHHHH-HH
Confidence 4556788888999999998876 567777777765442 23 555555 2 1 1 23344333 33
Q ss_pred HhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc---hHHHHHHHH-HhCCCCCCcEEEEe
Q psy4448 98 KEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA---KSDFIEIMK-EYAPKLPRKGVIHS 173 (487)
Q Consensus 98 ~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a---~~d~l~iLk-~~~~~~~~~~v~H~ 173 (487)
.+ -.+.+| -+--+||. . ..|+.+++..-++|...++||+|..+-. .-+++.-|. +.+. ..+|=.
T Consensus 96 ~~--~Gadav-~~~pP~y~-~----~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~~n---vvgiKd- 163 (296)
T TIGR03249 96 EK--AGADGY-LLLPPYLI-N----GEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLADRCPN---LVGFKD- 163 (296)
T ss_pred HH--hCCCEE-EECCCCCC-C----CCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhCCC---EEEEEe-
Confidence 33 133444 34445554 1 2367788888888888899999887532 224444443 3432 234444
Q ss_pred cCCCHHHHHHHHcC
Q psy4448 174 FDGTPFQAVDSLKT 187 (487)
Q Consensus 174 FsG~~~~a~~~l~~ 187 (487)
-+|+.....++++.
T Consensus 164 s~~d~~~~~~~~~~ 177 (296)
T TIGR03249 164 GIGDMEQMIEITQR 177 (296)
T ss_pred CCCCHHHHHHHHHH
Confidence 47888887776543
No 145
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=76.34 E-value=7.6 Score=35.09 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=33.8
Q ss_pred EEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC-CHHhHHHHHHHHhc
Q psy4448 4 IDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT-NVEDSISSLKLAQS 64 (487)
Q Consensus 4 iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~-~~~~~~~~~~la~~ 64 (487)
||.|||...... .| ...+++++++|.+.|++.+.+.-- +...+....+.++.
T Consensus 1 iDlH~HT~~s~~----dg-----~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~ 53 (175)
T PF02811_consen 1 IDLHVHTKYSIL----DG-----KDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKK 53 (175)
T ss_dssp EEEEB--TTTSS----TS-----SSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHH
T ss_pred CCccccccCcch----hh-----cCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHh
Confidence 799999875411 23 568999999999999997766533 34445455555554
No 146
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=76.27 E-value=82 Score=30.97 Aligned_cols=42 Identities=7% Similarity=-0.089 Sum_probs=24.7
Q ss_pred HHHHHhhhCCCCEE--EEeccchHHHHHHHHHhCCCCCCCcEEEEeeCC
Q psy4448 255 KQLDLSVTHKLPLF--LHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGT 301 (487)
Q Consensus 255 ~ql~lA~~~~lPl~--iH~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~ 301 (487)
..++.++++|+..+ +|..-..+++-.+++.. ...+|.|.+|.
T Consensus 120 ~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~-----~~~l~msv~~~ 163 (244)
T PRK13125 120 KYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLS-----PLFIYYGLRPA 163 (244)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC-----CCEEEEEeCCC
Confidence 45566777777754 55554555666666542 23456687663
No 147
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=75.74 E-value=90 Score=31.17 Aligned_cols=53 Identities=9% Similarity=0.031 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHhCCCCCCcEEEEecCCCHHHHH
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAV 182 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~~~~~~~~~v~H~FsG~~~~a~ 182 (487)
.+.++...++++++++.+.++.-...++.++.|++.+. ..+.+.+.++.+..+
T Consensus 97 ~~~~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~----~~v~i~~E~~~~~~~ 149 (296)
T TIGR00433 97 MEYVEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGL----DYYNHNLDTSQEFYS 149 (296)
T ss_pred HHHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCC----CEEEEcccCCHHHHh
Confidence 67788888888889999988876667889999998864 567787776655444
No 148
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=75.05 E-value=14 Score=36.87 Aligned_cols=102 Identities=14% Similarity=0.226 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHhcCCCEEEEECCCHH--------------hHHHHHHHHhcC--CCeEEEeecCCCCCCCcCCCchhhHH
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTGTNVE--------------DSISSLKLAQSD--ERLYSTVGCHPTRCSEFENDPEGYLQ 91 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~~~~~--------------~~~~~~~la~~~--~~v~~avGiHP~~~~~~~~~~~~~l~ 91 (487)
..+...+.++.+.||+.+++++.|+. +...++++.++. +.+...++.||..-.+. .....
T Consensus 73 ~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~----~~~~~ 148 (274)
T cd00537 73 IELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEA----PSLEE 148 (274)
T ss_pred HHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCCCcCCCC----CCHHH
Confidence 46777888888999998888855432 233445554443 34555566666222111 11122
Q ss_pred HHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCC--CCEE
Q psy4448 92 SLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHK--LPLF 144 (487)
Q Consensus 92 ~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~--lPVi 144 (487)
++..+..+ + +.|-||.- .+...+ .+.|.+.++.+++.+ .||+
T Consensus 149 ~~~~L~~K----i----~aGA~f~i-TQ~~fd--~~~~~~~~~~~~~~gi~vPIi 192 (274)
T cd00537 149 DIKRLKRK----V----DAGADFII-TQLFFD--NDAFLRFVDRCRAAGITVPII 192 (274)
T ss_pred HHHHHHHH----H----HCCCCEEe-eccccc--HHHHHHHHHHHHHcCCCCCEE
Confidence 33333333 2 23667643 222222 256666777777664 5554
No 149
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=73.67 E-value=78 Score=32.26 Aligned_cols=138 Identities=14% Similarity=0.062 Sum_probs=75.2
Q ss_pred HhcCCCEEEEECC----CHHhHHHHHHHHhcCCC-eEEEeecCCCCCCCcCCCchhhHHHHHHHHHhc-CCCEEEEEeeC
Q psy4448 38 WNAGLEKIIVTGT----NVEDSISSLKLAQSDER-LYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEG-GKKVVAFGEFG 111 (487)
Q Consensus 38 ~~~GV~~ii~v~~----~~~~~~~~~~la~~~~~-v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~-~~~vvaIGEIG 111 (487)
.+.|+...++++. +++.....++++.+++. ...++|+++.... . ..+.+..+.+.+.++ .+-.+-+||.|
T Consensus 121 ~~~gi~~~li~~~~r~~~~~~~~~~~~~~~~~~~~~vvg~~l~~~e~~-~---~~~~~~~~~~~A~~~g~~i~~Ha~E~~ 196 (324)
T TIGR01430 121 RDFGIKSRLILCGMRHKQPEAAEETLELAKPYKEQTIVGFGLAGDERG-G---PPPDFVRAFAIARELGLHLTVHAGELG 196 (324)
T ss_pred HhcCCeEEEEEEEeCCCCHHHHHHHHHHHHhhccCcEEEecCCCCCCC-C---CHHHHHHHHHHHHHCCCCeEEecCCCC
Confidence 3567765333333 35566666777666643 4578888874321 1 123344444444432 12245566653
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc--hHHHHHHHHHhCCCCCCcEEEEecCCCHH----------
Q psy4448 112 LDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA--KSDFIEIMKEYAPKLPRKGVIHSFDGTPF---------- 179 (487)
Q Consensus 112 LD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a--~~d~l~iLk~~~~~~~~~~v~H~FsG~~~---------- 179 (487)
-. .+.+ . ...+++.-.+.|+... .++.++++++.+. .+.||-+.+..
T Consensus 197 ~~--------~~~~----~----~~~~~g~~ri~Hg~~l~~~~~~i~~l~~~gi-----~v~~cP~Sn~~l~~~~~~~~~ 255 (324)
T TIGR01430 197 GP--------ESVR----E----ALDDLGATRIGHGVRALEDPELLKRLAQENI-----TLEVCPTSNVALGVVKSLAEH 255 (324)
T ss_pred Ch--------HHHH----H----HHHHcCchhcchhhhhccCHHHHHHHHHcCc-----eEEECCcccccccccCCcccC
Confidence 21 0111 1 1113444568999887 5568999987643 57777665532
Q ss_pred HHHHHHcCccchhHhhhcCCCceeeccCCCCC
Q psy4448 180 QAVDSLKTKENLETVKSIPEDRLLLETDCPWC 211 (487)
Q Consensus 180 ~a~~~l~~~~g~e~v~~iP~driLlETD~P~l 211 (487)
-++++++. |. ++-|.||.|..
T Consensus 256 pi~~l~~~--Gv---------~v~igTD~~~~ 276 (324)
T TIGR01430 256 PLRRFLEA--GV---------KVTLNSDDPAY 276 (324)
T ss_pred hHHHHHHC--CC---------EEEECCCCCcc
Confidence 23445555 43 68899999865
No 150
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=73.45 E-value=13 Score=28.64 Aligned_cols=52 Identities=17% Similarity=0.258 Sum_probs=33.9
Q ss_pred EecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCC-HHhHHHHHHHHhcC
Q psy4448 5 DIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTN-VEDSISSLKLAQSD 65 (487)
Q Consensus 5 D~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~-~~~~~~~~~la~~~ 65 (487)
|.|+|.....+ .| ...+++++++|++.|+..+.+.-.+ ........++++++
T Consensus 1 dlH~Ht~~S~~----~~-----~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~ 53 (67)
T smart00481 1 DLHVHSDYSLL----DG-----ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKA 53 (67)
T ss_pred CCccccCCccc----cc-----cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHc
Confidence 67888865321 23 5678999999999999877665332 34444555555543
No 151
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=73.42 E-value=18 Score=38.56 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=90.0
Q ss_pred EEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC-----------CHH--hHHHHHHHHhcCCCeEE
Q psy4448 4 IDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT-----------NVE--DSISSLKLAQSDERLYS 70 (487)
Q Consensus 4 iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~-----------~~~--~~~~~~~la~~~~~v~~ 70 (487)
||+|+|+=.+ +.+..|-..||+.++--|+ .|. ...++++.+..+|-=+.
T Consensus 132 iDtHiHfI~P------------------qqi~~Al~sGiTtmiGGGtGpa~Gt~aTT~TpG~w~i~rMl~a~d~~p~N~g 193 (568)
T COG0804 132 IDTHIHFICP------------------QQIEEALASGITTMIGGGTGPADGTNATTCTPGPWHIARMLQAADGLPMNIG 193 (568)
T ss_pred ccceeEEecH------------------HHHHHHHhcCcEEEecCccCCCCCcccccccCCHHHHHHHHHhhhcCceeeE
Confidence 7999997664 2356778899988774433 233 34467777777774344
Q ss_pred EeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC-
Q psy4448 71 TVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN- 149 (487)
Q Consensus 71 avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~- 149 (487)
.+|--- +. ....|.+.+. -|-|||..+. + +-.--.+....|..|.+++.-|.||+--
T Consensus 194 ~lgKGn--~s--------~~~~L~Eqi~--------aGa~GlKlHE-D---WG~TpaaI~~~L~VAD~~DvqVaiHtDTL 251 (568)
T COG0804 194 FLGKGN--AS--------NPAPLAEQIE--------AGAIGLKLHE-D---WGATPAAIDTCLSVADEYDVQVAIHTDTL 251 (568)
T ss_pred EeecCC--CC--------CchhHHHHHh--------hccceeEeec-c---cCCCHHHHHHHHhhhhhhceEEEEeeccc
Confidence 444211 11 1123444443 3568887653 2 2223456778899999999999999953
Q ss_pred ----chHHHHHHHHHhCCCCCCcEEEEecCCCHHHHHHHHcCccchhHhhhcCCCceeeccCCCCC
Q psy4448 150 ----AKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWC 211 (487)
Q Consensus 150 ----a~~d~l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~~~g~e~v~~iP~driLlETD~P~l 211 (487)
-.+++++.++ .-.+|.|-.-- | .=|-.-++++.+..-+||--|--|-+
T Consensus 252 NEsGfvEdTi~A~~--------gRtIHtyHtEG--A----GGGHAPDiikv~~~~NvLPsSTNPT~ 303 (568)
T COG0804 252 NESGFVEDTIAAIK--------GRTIHTYHTEG--A----GGGHAPDIIKVAGQPNVLPSSTNPTR 303 (568)
T ss_pred ccccchHhHHHHhc--------CceeEEeeccC--C----CCCCccHHHHHccCCCcCcCCCCCCC
Confidence 3566666653 23677764210 0 00001255666666666666655554
No 152
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=72.97 E-value=89 Score=31.53 Aligned_cols=136 Identities=10% Similarity=0.064 Sum_probs=77.8
Q ss_pred CHHHHHHHHHhcCCCEEEEECC-------CHHhHHHHHHHHhcC--CC--eEEEeecCCCCCCCcCCCchhhHHHHHHHH
Q psy4448 29 DIDHVLNRAWNAGLEKIIVTGT-------NVEDSISSLKLAQSD--ER--LYSTVGCHPTRCSEFENDPEGYLQSLDKII 97 (487)
Q Consensus 29 d~~~vl~ra~~~GV~~ii~v~~-------~~~~~~~~~~la~~~--~~--v~~avGiHP~~~~~~~~~~~~~l~~L~~ll 97 (487)
.+..+++.+.+.||..+++.|+ +.++..++++.+.+. ++ |++.+| + .. .+.++.. +.+
T Consensus 22 ~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~--~t-------~~~i~~a-~~a 90 (289)
T cd00951 22 AYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y--GT-------ATAIAYA-QAA 90 (289)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C--CH-------HHHHHHH-HHH
Confidence 3556788888999999998876 567777777654332 33 444444 1 11 2334433 334
Q ss_pred HhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCch---HHHHHHHHH-hCCCCCCcEEEEe
Q psy4448 98 KEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAK---SDFIEIMKE-YAPKLPRKGVIHS 173 (487)
Q Consensus 98 ~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~---~d~l~iLk~-~~~~~~~~~v~H~ 173 (487)
.+ -.+.+| -+--.||. . ..|..+++..-++|...++||+|..+-.. -+++.-|.+ .+. ..+| .-
T Consensus 91 ~~--~Gad~v-~~~pP~y~-~----~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~~pn---ivgi-Kd 158 (289)
T cd00951 91 EK--AGADGI-LLLPPYLT-E----APQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAERCPN---LVGF-KD 158 (289)
T ss_pred HH--hCCCEE-EECCCCCC-C----CCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHhcCCC---EEEE-Ee
Confidence 43 134444 34455553 1 13677777777788888999999875432 234433333 322 1233 33
Q ss_pred cCCCHHHHHHHHcC
Q psy4448 174 FDGTPFQAVDSLKT 187 (487)
Q Consensus 174 FsG~~~~a~~~l~~ 187 (487)
-+|+.....+++..
T Consensus 159 s~~d~~~~~~~~~~ 172 (289)
T cd00951 159 GVGDIELMRRIVAK 172 (289)
T ss_pred CCCCHHHHHHHHHh
Confidence 46787776666543
No 153
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=72.75 E-value=26 Score=35.21 Aligned_cols=49 Identities=12% Similarity=0.178 Sum_probs=28.1
Q ss_pred CHHHHHHHHHhcCCCEEEEECCCHH------------hHHHHHHHHhc-CCCeEEEeecCCC
Q psy4448 29 DIDHVLNRAWNAGLEKIIVTGTNVE------------DSISSLKLAQS-DERLYSTVGCHPT 77 (487)
Q Consensus 29 d~~~vl~ra~~~GV~~ii~v~~~~~------------~~~~~~~la~~-~~~v~~avGiHP~ 77 (487)
.+...|.++...||+.+++++.|+. +...++++.++ ++.+..+++.||.
T Consensus 74 ~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Pe 135 (272)
T TIGR00676 74 EIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPE 135 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 4556667777777777776655443 12233444333 3556666666664
No 154
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=72.54 E-value=30 Score=35.44 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhhhCCCC----EEEEecC
Q psy4448 123 ETQLKYFRKQLDLSVTHKLP----LFLHCRN 149 (487)
Q Consensus 123 e~Q~~vF~~qL~LA~el~lP----ViIH~r~ 149 (487)
+.-.+.+..++++|..+|.+ |+||.-.
T Consensus 126 e~Si~~L~~~~~~~~~lG~~~~~~vViHpG~ 156 (303)
T PRK02308 126 ENSIKDLEYHAKLLDLMGIDDSSKINIHVGG 156 (303)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEECCCc
Confidence 34466677777777777777 6677533
No 155
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=72.50 E-value=1.1e+02 Score=30.50 Aligned_cols=124 Identities=18% Similarity=0.179 Sum_probs=67.4
Q ss_pred CHHHHHHHHHhc--CCCEEEEECC-----CHHhHHHHHHHHhcCC-CeEEEeecCCCCCCCcCCCchhhHHHHHHH-HHh
Q psy4448 29 DIDHVLNRAWNA--GLEKIIVTGT-----NVEDSISSLKLAQSDE-RLYSTVGCHPTRCSEFENDPEGYLQSLDKI-IKE 99 (487)
Q Consensus 29 d~~~vl~ra~~~--GV~~ii~v~~-----~~~~~~~~~~la~~~~-~v~~avGiHP~~~~~~~~~~~~~l~~L~~l-l~~ 99 (487)
.++.+++.+.+. ..+.+|+.|- +.++++...+..++.+ .++...|=|=... ...+.+.+. +..
T Consensus 41 ~l~~~i~~i~~~~~~~D~vvitGDl~~~~~~~~~~~~~~~l~~l~~Pv~~v~GNHD~~~--------~~~~~~~~~~~~~ 112 (275)
T PRK11148 41 SYQAVLEAIRAQQHEFDLIVATGDLAQDHSSEAYQHFAEGIAPLRKPCVWLPGNHDFQP--------AMYSALQDAGISP 112 (275)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCCCCCCCHHHHHHHHHHHhhcCCcEEEeCCCCCChH--------HHHHHHhhcCCCc
Confidence 466677776554 3666655442 3456666666655553 4889999883211 111112111 000
Q ss_pred cCCCEEEEE----eeCCCCCCCC--C-CChHHHHHHHHHHHHHhhhCCCCEEEEe-c-------------CchHHHHHHH
Q psy4448 100 GGKKVVAFG----EFGLDYDRVQ--Y-CPVETQLKYFRKQLDLSVTHKLPLFLHC-R-------------NAKSDFIEIM 158 (487)
Q Consensus 100 ~~~~vvaIG----EIGLD~~~~~--~-~~~e~Q~~vF~~qL~LA~el~lPViIH~-r-------------~a~~d~l~iL 158 (487)
...+..| -|+||-.... . .--+.|.++++.+|+-+.+...-|++|- . ...++++++|
T Consensus 113 --~~~~~~~~~~~~i~Lds~~~g~~~G~l~~~ql~wL~~~L~~~~~~~~vv~~hH~P~~~~~~~~d~~~l~n~~~l~~ll 190 (275)
T PRK11148 113 --AKHVLIGEHWQILLLDSQVFGVPHGELSEYQLEWLERKLADAPERHTLVLLHHHPLPAGCAWLDQHSLRNAHELAEVL 190 (275)
T ss_pred --cceEEecCCEEEEEecCCCCCCcCCEeCHHHHHHHHHHHhhCCCCCeEEEEcCCCCCCCcchhhccCCCCHHHHHHHH
Confidence 1112222 3777743211 0 1137899999999998865444455662 1 1235889999
Q ss_pred HHhC
Q psy4448 159 KEYA 162 (487)
Q Consensus 159 k~~~ 162 (487)
++++
T Consensus 191 ~~~~ 194 (275)
T PRK11148 191 AKFP 194 (275)
T ss_pred hcCC
Confidence 8773
No 156
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=72.16 E-value=16 Score=35.24 Aligned_cols=130 Identities=15% Similarity=0.125 Sum_probs=63.5
Q ss_pred EEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhC-CCCEE-EE
Q psy4448 69 YSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTH-KLPLF-LH 146 (487)
Q Consensus 69 ~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el-~lPVi-IH 146 (487)
+.++.+||........+ ......+-+++.++ +-.+.+ =+|.-.. .....+.......-+++.++ ++.++ -|
T Consensus 99 ~~Gv~l~~~~~~~~~~~-~~~~~~~~~~~~~~-~~pv~~-H~g~~~~----~~~~~~~~~~~~~~~~~~~~P~l~ii~~H 171 (273)
T PF04909_consen 99 FRGVKLHPDLGGFDPDD-PRLDDPIFEAAEEL-GLPVLI-HTGMTGF----PDAPSDPADPEELEELLERFPDLRIILAH 171 (273)
T ss_dssp ESEEEEESSETTCCTTS-GHCHHHHHHHHHHH-T-EEEE-EESHTHH----HHHHHHHHHHHHHTTHHHHSTTSEEEESG
T ss_pred eeeeEecCCCCcccccc-HHHHHHHHHHHHhh-ccceee-eccccch----hhhhHHHHHHHHHHHHHHHhcCCeEEEec
Confidence 44688888665433211 22222444455543 233333 3441100 11122333344445677777 66766 67
Q ss_pred ecCc---hHHHHHHHHHhCCCC-CCcEE---EEecCCCHHHHHHHHcCccchhHhhhcCCCceeeccCCCCCC
Q psy4448 147 CRNA---KSDFIEIMKEYAPKL-PRKGV---IHSFDGTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCE 212 (487)
Q Consensus 147 ~r~a---~~d~l~iLk~~~~~~-~~~~v---~H~FsG~~~~a~~~l~~~~g~e~v~~iP~driLlETD~P~l~ 212 (487)
+-.. ..++++++++++.-. ...++ .+-+ ........+ ..++...+.||||++||+|+..
T Consensus 172 ~G~~~~~~~~~~~l~~~~~nvy~d~s~~~~~~~~~--~~~~~~~~l-----~~~~~~~g~drilfGSD~P~~~ 237 (273)
T PF04909_consen 172 LGGPFPWWEEALRLLDRFPNVYVDLSGIPPFWYFW--PPSFDRPFL-----RRAVDEFGPDRILFGSDYPHPD 237 (273)
T ss_dssp GGTTHHHHHHHHHHHHHHTTEEEECHSHHSSEEEE--TTHHCHHHH-----HHHHHHHTGGGEEEE--TTSST
T ss_pred CcccchhHHHHHHHHHhCCcccccccccccccccC--cccccHHHH-----HHHHHHhCCceEEecCCCCCCC
Confidence 8766 668888888875310 00010 1111 111111112 2456677889999999999985
No 157
>PRK09237 dihydroorotase; Provisional
Probab=72.13 E-value=4.8 Score=42.06 Aligned_cols=119 Identities=19% Similarity=0.293 Sum_probs=76.7
Q ss_pred HHHHHHHhhhCCCCEEEEeccchHHHHHHHHHhCCCCCCCcEEEEeeCCcc-----------cccc--------ccc---
Q psy4448 253 FRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPF-----------QAVD--------SLK--- 310 (487)
Q Consensus 253 F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~~~-----------~~~~--------~~k--- 310 (487)
.+....+|++.++||.+|++++..+..++++-..+. ..+.|+|+|+.. .+.. .+.
T Consensus 170 ~~~~~~~a~~~g~~v~~H~~~~~~~~~~l~~~l~~g---~~~~H~~~~~~~~~~~~~~~~~~~a~~~l~~G~~~~ig~g~ 246 (380)
T PRK09237 170 LELAKAIAAEANLPLMVHIGNPPPSLEEILELLRPG---DILTHCFNGKPNRILDEDGELRPSVLEALERGVRLDVGHGT 246 (380)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCHHHHHhhccCC---CEEEecCCCCCCCccCCCCcchHHHHHHHHCCEEEEecCCC
Confidence 356666778999999999999876666665544332 368999999752 1110 011
Q ss_pred ---c-hhhHHHhhh-CCCCceEeccCCCCCCCCCCCcchhhHhhhhhhhhhhccCCccCCCCCCcccc-HHHHHHHHHHh
Q psy4448 311 ---T-KENLETVKS-IPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPAN-IVQILEIVAAV 384 (487)
Q Consensus 311 ---~-~~~~e~v~~-iPldrlLlETD~P~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~P~~-l~~v~~~iA~i 384 (487)
+ +...++++. ++.+ .++||.. + ....|.|.+ +..+++.+++
T Consensus 247 ~~~~~~~~~~l~~~g~~~~--~l~tD~~-----~-------------------------~~~~~~~~~~l~~~~~~~~~- 293 (380)
T PRK09237 247 ASFSFKVAEAAIAAGILPD--TISTDIY-----C-------------------------RNRINGPVYSLATVMSKFLA- 293 (380)
T ss_pred CcccHHHHHHHHHCCCCce--EEECCCC-----C-------------------------CCcccchHhHHHHHHHHHHH-
Confidence 0 111233332 1122 4677652 1 022456665 7888887765
Q ss_pred hCCCHHHHHHHHHHHHHHhcCCC
Q psy4448 385 RGVEREKLGPIIHQNTLRLFFPH 407 (487)
Q Consensus 385 kg~~~~~va~~~~~N~~rlf~~~ 407 (487)
+|++++++.+.++.|..++|++.
T Consensus 294 ~g~~~~~al~~aT~n~A~~lgl~ 316 (380)
T PRK09237 294 LGMPLEEVIAAVTKNAADALRLP 316 (380)
T ss_pred hCCCHHHHHHHHHHHHHHHcCCC
Confidence 79999999999999999999985
No 158
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=71.60 E-value=94 Score=30.53 Aligned_cols=136 Identities=12% Similarity=0.023 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHhcCCCEEEEEC---------CCHHhHHHHHHHHhcCCCeEEEeec----CCCCCCCcCC-CchhhHHHH
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTG---------TNVEDSISSLKLAQSDERLYSTVGC----HPTRCSEFEN-DPEGYLQSL 93 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~---------~~~~~~~~~~~la~~~~~v~~avGi----HP~~~~~~~~-~~~~~l~~L 93 (487)
.++++.++.+++.|++.+=+.+ .+..+.+.+.+++++++--..+++. .|........ ..+..++.+
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~ 92 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMI 92 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHH
Confidence 4789999999999998654322 1223455666677777643333322 1221100000 011223334
Q ss_pred HHHHH---hcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC--------chHHHHHHHHHhC
Q psy4448 94 DKIIK---EGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN--------AKSDFIEIMKEYA 162 (487)
Q Consensus 94 ~~ll~---~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~--------a~~d~l~iLk~~~ 162 (487)
.+.+. .-.-+++.++-....+.......++.-.+.++...++|.++|+.+.+|... ...+++++++...
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~~~~~~~~t~~~~~~l~~~~~ 172 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCNANDVLHALALVP 172 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCCCcccccCCHHHHHHHHHHcC
Confidence 33332 111234444322222211011123455677899999999999999999742 3578999998775
Q ss_pred C
Q psy4448 163 P 163 (487)
Q Consensus 163 ~ 163 (487)
.
T Consensus 173 ~ 173 (275)
T PRK09856 173 S 173 (275)
T ss_pred C
Confidence 3
No 159
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=71.11 E-value=91 Score=33.40 Aligned_cols=151 Identities=15% Similarity=0.169 Sum_probs=79.3
Q ss_pred CHHHHHHHHHhcCCCEEEEECC-CH---HhH----HHHHHHHhcC-----CCeEEEeecCCCCCCCcCCCchhhHHHHHH
Q psy4448 29 DIDHVLNRAWNAGLEKIIVTGT-NV---EDS----ISSLKLAQSD-----ERLYSTVGCHPTRCSEFENDPEGYLQSLDK 95 (487)
Q Consensus 29 d~~~vl~ra~~~GV~~ii~v~~-~~---~~~----~~~~~la~~~-----~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ 95 (487)
..+.+.+.+.+.|++.++..++ +. ... ....++.+++ +.+.+.+|.|-.+. . .++.++.+.+
T Consensus 137 ~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~p~~~~t--~---s~~~l~~~~~ 211 (441)
T TIGR03314 137 SLSTIRKAADEAGLRTMLCYETSDRDGGKEMQEGVEENIAFIKKSSGKEPYLVEAHIGAHAPFT--V---SDAGLEMCRE 211 (441)
T ss_pred hHHHHHHHHHHhCCeEEEeeeeecCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCCCCC--C---CHHHHHHHHH
Confidence 4567788888999987664322 11 111 2223333333 24777888773221 1 2355666777
Q ss_pred HHHhcCCCEEEEEeeCCCCCCCCCCChHH--HHHHH-HHHHHHhhhCC----CCEEEEecCchHHHHHHHHHhCCCCCCc
Q psy4448 96 IIKEGGKKVVAFGEFGLDYDRVQYCPVET--QLKYF-RKQLDLSVTHK----LPLFLHCRNAKSDFIEIMKEYAPKLPRK 168 (487)
Q Consensus 96 ll~~~~~~vvaIGEIGLD~~~~~~~~~e~--Q~~vF-~~qL~LA~el~----lPViIH~r~a~~d~l~iLk~~~~~~~~~ 168 (487)
+..++ + +++.-+- ..+..+. ..+.+ ..-++...+++ ..+..||....++-+++|++.+.
T Consensus 212 lA~~~-~-------~~i~~H~-~E~~~e~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~~~~~d~~~la~~g~----- 277 (441)
T TIGR03314 212 AVQAT-G-------RGFHIHV-AEDIYDVEDSHHKYGKDIVERLADFGLLGSKTLAAHCIYLSDREIELLNETDT----- 277 (441)
T ss_pred HHHHc-C-------CCEEEEc-CCCHHHHHHHHHHcCCCHHHHHHHCCCCCCCeEEEEEecCCHHHHHHHHHcCC-----
Confidence 66552 1 1222111 1111111 11111 11233333433 35679999999999999988743
Q ss_pred EEEEecCCCHHH------HHHHHcCccchhHhhhcCCCceeeccCCC
Q psy4448 169 GVIHSFDGTPFQ------AVDSLKTKENLETVKSIPEDRLLLETDCP 209 (487)
Q Consensus 169 ~v~H~FsG~~~~------a~~~l~~~~g~e~v~~iP~driLlETD~P 209 (487)
.|.||-..+... +.++++. |. ++-|.||+.
T Consensus 278 ~v~~cP~sn~~l~~G~~p~~~~~~~--Gv---------~v~LGtD~~ 313 (441)
T TIGR03314 278 FVVHNPESNMGNAVGYNPVLRMFKN--GI---------LLGLGTDGY 313 (441)
T ss_pred cEEECHHHHhhhccCCCCHHHHHHC--CC---------EEEEcCCCC
Confidence 689997554321 1223333 32 688999974
No 160
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=69.68 E-value=50 Score=33.45 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=33.8
Q ss_pred CEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHh
Q psy4448 103 KVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEY 161 (487)
Q Consensus 103 ~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~ 161 (487)
.++..|-.|==+. -+.+..+++++...+.+.. +.||+.|.-...++.+++.+..
T Consensus 42 gi~v~GstGE~~~----Lt~eEr~~v~~~~~~~~~g-~~pvi~gv~~~t~~ai~~a~~a 95 (296)
T TIGR03249 42 ALFAAGGTGEFFS----LTPAEYEQVVEIAVSTAKG-KVPVYTGVGGNTSDAIEIARLA 95 (296)
T ss_pred EEEECCCCcCccc----CCHHHHHHHHHHHHHHhCC-CCcEEEecCccHHHHHHHHHHH
Confidence 3444455554322 2457788888888887543 6888888765566666665543
No 161
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=68.79 E-value=1.1e+02 Score=30.54 Aligned_cols=135 Identities=14% Similarity=0.189 Sum_probs=78.0
Q ss_pred HHHHHHHHHhcCCCEEEEECC-------CHHhHHHHHHHHhcC--CC--eEEEeecCCCCCCCcCCCchhhHHHHHHHHH
Q psy4448 30 IDHVLNRAWNAGLEKIIVTGT-------NVEDSISSLKLAQSD--ER--LYSTVGCHPTRCSEFENDPEGYLQSLDKIIK 98 (487)
Q Consensus 30 ~~~vl~ra~~~GV~~ii~v~~-------~~~~~~~~~~la~~~--~~--v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~ 98 (487)
+.+.++..-+.||..+++.|+ +.++..++++.+.+. ++ ++..+|-+. .++.++..+. ++
T Consensus 24 ~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~s---------t~~~i~~a~~-a~ 93 (289)
T PF00701_consen 24 LKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANS---------TEEAIELARH-AQ 93 (289)
T ss_dssp HHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSS---------HHHHHHHHHH-HH
T ss_pred HHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchh---------HHHHHHHHHH-Hh
Confidence 445677777899999998876 366677777665432 34 555555432 2344444443 44
Q ss_pred hcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc------hHHHHHHHHHhCCCCCCcEEEE
Q psy4448 99 EGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA------KSDFIEIMKEYAPKLPRKGVIH 172 (487)
Q Consensus 99 ~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a------~~d~l~iLk~~~~~~~~~~v~H 172 (487)
+. .+.+| -+...||. . -.|..+++..-++|...++|++|+..-+ .-+++.-|.+.+. -.-+.
T Consensus 94 ~~--Gad~v-~v~~P~~~-~----~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~~n----v~giK 161 (289)
T PF00701_consen 94 DA--GADAV-LVIPPYYF-K----PSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAKIPN----VVGIK 161 (289)
T ss_dssp HT--T-SEE-EEEESTSS-S----CCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTSTT----EEEEE
T ss_pred hc--CceEE-EEeccccc-c----chhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhcCCc----EEEEE
Confidence 42 34444 34445554 2 2377788889999999999999998641 2234444433321 22334
Q ss_pred ecCCCHHHHHHHHc
Q psy4448 173 SFDGTPFQAVDSLK 186 (487)
Q Consensus 173 ~FsG~~~~a~~~l~ 186 (487)
--+++.....+++.
T Consensus 162 ~s~~~~~~~~~~~~ 175 (289)
T PF00701_consen 162 DSSGDLERLIQLLR 175 (289)
T ss_dssp ESSSBHHHHHHHHH
T ss_pred cCchhHHHHHHHhh
Confidence 34577655555444
No 162
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=68.74 E-value=45 Score=33.39 Aligned_cols=104 Identities=13% Similarity=0.170 Sum_probs=60.3
Q ss_pred CHHHHHHHHHhcCCCEEEEECC-------CHHhHHHHHHHHhcC--CCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHh
Q psy4448 29 DIDHVLNRAWNAGLEKIIVTGT-------NVEDSISSLKLAQSD--ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKE 99 (487)
Q Consensus 29 d~~~vl~ra~~~GV~~ii~v~~-------~~~~~~~~~~la~~~--~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~ 99 (487)
.+...++.+.+.|+..+++.|+ +.++..++++.+.+. +.+-..+|+-... .++.++.. +.+.+
T Consensus 22 ~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~-------~~~~~~~a-~~a~~ 93 (284)
T cd00950 22 ALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNN-------TAEAIELT-KRAEK 93 (284)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCcc-------HHHHHHHH-HHHHH
Confidence 3456778888899999998876 467777777765443 3343345544321 12333333 33333
Q ss_pred cCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEec
Q psy4448 100 GGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCR 148 (487)
Q Consensus 100 ~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r 148 (487)
. .+.+| -+...++. . ..|.++++..-++|...++||+|+.-
T Consensus 94 ~--G~d~v-~~~~P~~~-~----~~~~~l~~~~~~ia~~~~~pi~lYn~ 134 (284)
T cd00950 94 A--GADAA-LVVTPYYN-K----PSQEGLYAHFKAIAEATDLPVILYNV 134 (284)
T ss_pred c--CCCEE-EEcccccC-C----CCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 1 23333 23344433 1 12566777777777778999999864
No 163
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=68.45 E-value=1.2e+02 Score=30.42 Aligned_cols=138 Identities=12% Similarity=0.129 Sum_probs=76.1
Q ss_pred CHHHHHHHHHhcCCCEEEEECC-------CHHhHHHHHHHHhcC--CCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHh
Q psy4448 29 DIDHVLNRAWNAGLEKIIVTGT-------NVEDSISSLKLAQSD--ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKE 99 (487)
Q Consensus 29 d~~~vl~ra~~~GV~~ii~v~~-------~~~~~~~~~~la~~~--~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~ 99 (487)
.+...++.+.+.||+.+++.|+ +.++..++++.+.+. +++-..+|+=... ..+.++..+ .+.+
T Consensus 23 ~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~-------~~~~i~~a~-~a~~ 94 (292)
T PRK03170 23 ALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNS-------TAEAIELTK-FAEK 94 (292)
T ss_pred HHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCch-------HHHHHHHHH-HHHH
Confidence 3456778888999999998876 567777777765432 3333334442211 123333333 3333
Q ss_pred cCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc------hHHHHHHHHHhCCCCCCcEEEEe
Q psy4448 100 GGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA------KSDFIEIMKEYAPKLPRKGVIHS 173 (487)
Q Consensus 100 ~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a------~~d~l~iLk~~~~~~~~~~v~H~ 173 (487)
-.+.+| -+...+|. . ..|..+++..-++|...++||+|..--+ .-+++.-|.+.+. -.-+.-
T Consensus 95 --~G~d~v-~~~pP~~~-~----~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~~p~----v~giK~ 162 (292)
T PRK03170 95 --AGADGA-LVVTPYYN-K----PTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLAEHPN----IVGIKE 162 (292)
T ss_pred --cCCCEE-EECCCcCC-C----CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHHcCCC----EEEEEE
Confidence 133444 23344433 1 1367777777777878899999985321 2244444443321 223333
Q ss_pred cCCCHHHHHHHHc
Q psy4448 174 FDGTPFQAVDSLK 186 (487)
Q Consensus 174 FsG~~~~a~~~l~ 186 (487)
-+++.....++++
T Consensus 163 s~~d~~~~~~~~~ 175 (292)
T PRK03170 163 ATGDLERVSELIE 175 (292)
T ss_pred CCCCHHHHHHHHH
Confidence 4677766666654
No 164
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=68.24 E-value=46 Score=33.85 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhhCCCCEEEEecCc------hHHHHHHHHHhCCCCCCcEEEEecCC-CHHHHHHHHcCccchhHhhhcCC
Q psy4448 127 KYFRKQLDLSVTHKLPLFLHCRNA------KSDFIEIMKEYAPKLPRKGVIHSFDG-TPFQAVDSLKTKENLETVKSIPE 199 (487)
Q Consensus 127 ~vF~~qL~LA~el~lPViIH~r~a------~~d~l~iLk~~~~~~~~~~v~H~FsG-~~~~a~~~l~~~~g~e~v~~iP~ 199 (487)
+..+..++.|.+.+-||||-.-.. .+.+..+++........++.+|-=-| +.+.++++++. |+
T Consensus 29 e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~--Gf-------- 98 (283)
T PRK07998 29 ETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRA--GF-------- 98 (283)
T ss_pred HHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECcCCCCHHHHHHHHHc--CC--------
Confidence 456778888999999999866332 22233333322111113577776444 77888888887 54
Q ss_pred CceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccccCCCChhhhHHHHHHHHHHhhhCCCCE
Q psy4448 200 DRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVYFRKQLDLSVTHKLPL 267 (487)
Q Consensus 200 driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~P~Q~~~F~~ql~lA~~~~lPl 267 (487)
+-+|+ |+.-+ +...++...++-.++|..+|.+|
T Consensus 99 tSVM~--DgS~l---------------------------------~~eeNi~~T~~vve~Ah~~gv~V 131 (283)
T PRK07998 99 TSVMI--DGAAL---------------------------------PFEENIAFTKEAVDFAKSYGVPV 131 (283)
T ss_pred CEEEE--eCCCC---------------------------------CHHHHHHHHHHHHHHHHHcCCEE
Confidence 33333 43322 23457888899999999999997
No 165
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=67.95 E-value=22 Score=36.97 Aligned_cols=54 Identities=24% Similarity=0.288 Sum_probs=33.7
Q ss_pred HHHHHHHhhhCCCCEEEEecCchH--HHHHHHHHhCCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 129 FRKQLDLSVTHKLPLFLHCRNAKS--DFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 129 F~~qL~LA~el~lPViIH~r~a~~--d~l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
++..++++... +||.+|+-.+.+ .++++.++++.. -.+.||+.. .+.+.++.+.
T Consensus 182 l~~l~~~~~~~-~~v~vHa~~~~~i~~~l~~~~e~g~~---~~i~H~~~~-~~~~~~la~~ 237 (359)
T cd01309 182 LEALLPVLKGE-IPVRIHAHRADDILTAIRIAKEFGIK---ITIEHGAEG-YKLADELAKH 237 (359)
T ss_pred HHHHHHHHcCC-eeEEEEeCCHHHHHHHHHHHHHcCCC---EEEECchhH-HHHHHHHHHc
Confidence 34445555433 899999977543 456666666542 367788766 6667666655
No 166
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=66.91 E-value=70 Score=31.88 Aligned_cols=110 Identities=15% Similarity=0.065 Sum_probs=67.5
Q ss_pred HhcCCCEEEEECCCHHhHHHHHHHHhcC-CCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCC
Q psy4448 38 WNAGLEKIIVTGTNVEDSISSLKLAQSD-ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDR 116 (487)
Q Consensus 38 ~~~GV~~ii~v~~~~~~~~~~~~la~~~-~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~ 116 (487)
+..|++-++-.|..+..++.+++.+..| ..+..+.|-+.-+. .+.+.+.-+++.++ +=.+.-|=+-+.
T Consensus 10 R~~GlT~v~Dkglg~~~~~dlLe~ag~yID~~K~g~Gt~~l~~-------~~~l~eki~l~~~~-gV~v~~GGtl~E--- 78 (244)
T PF02679_consen 10 RSRGLTMVIDKGLGLRYLEDLLESAGDYIDFLKFGWGTSALYP-------EEILKEKIDLAHSH-GVYVYPGGTLFE--- 78 (244)
T ss_dssp -SSS-EEEEESS--HHHHHHHHHHHGGG-SEEEE-TTGGGGST-------CHHHHHHHHHHHCT-T-EEEE-HHHHH---
T ss_pred CCCCcEEEecCCCCHHHHHHHHHHhhhhccEEEecCceeeecC-------HHHHHHHHHHHHHc-CCeEeCCcHHHH---
Confidence 3568999999999999999999999888 45777777765332 24455555666553 223444433222
Q ss_pred CCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC----chHHHHHHHHHhCC
Q psy4448 117 VQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN----AKSDFIEIMKEYAP 163 (487)
Q Consensus 117 ~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~----a~~d~l~iLk~~~~ 163 (487)
...+...|...++.|++++...|==|-. ..++-.++++....
T Consensus 79 -----~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~ 124 (244)
T PF02679_consen 79 -----VAYQQGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKE 124 (244)
T ss_dssp -----HHHHTT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCC
T ss_pred -----HHHhcChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHH
Confidence 2457788999999999999998755544 35566677776654
No 167
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=66.52 E-value=23 Score=36.93 Aligned_cols=136 Identities=14% Similarity=0.065 Sum_probs=80.0
Q ss_pred HHHHHhcCCCEEEEEC----CCHHhHHHHHHHHhcCC---CeEEEe--ecCCCCCCCcCCCchhhHHHHHH--HHHhcCC
Q psy4448 34 LNRAWNAGLEKIIVTG----TNVEDSISSLKLAQSDE---RLYSTV--GCHPTRCSEFENDPEGYLQSLDK--IIKEGGK 102 (487)
Q Consensus 34 l~ra~~~GV~~ii~v~----~~~~~~~~~~~la~~~~---~v~~av--GiHP~~~~~~~~~~~~~l~~L~~--ll~~~~~ 102 (487)
..++...||+.+...+ .+.+.+....++.+... .++..+ |--........ ......++. +....
T Consensus 136 ~~~~~a~GiTt~~d~~~~~~~~~~~~~~~~~l~~~~~l~~rv~~~~~~~~vk~~~dg~~---~~~~a~~~~~~~~~~~-- 210 (404)
T PF07969_consen 136 AMAAGAYGITTVLDYGGGFASDPEDLEALRELAAEGGLPLRVHLYPRIGGVKIFADGSP---GGRTALLEEPYYADEP-- 210 (404)
T ss_dssp HHHHCHTCEEEETTCECCCGEHHHHHHHHHHHHHCTC--SEEEEEEEEEEEEEESSSST---THHHHHHHHHHHHHHH--
T ss_pred HHHhcCCCeEEecCCccccCCCHHHHHHHHHHhhhcCCCeeeeeecccCceeecccccc---ccchhhhccccccCcc--
Confidence 4445567887766655 45666667777766543 222222 22222222111 111122222 22221
Q ss_pred CEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC--chHHHHHHHHHhCCCCCCcEEEEecCCCHHH
Q psy4448 103 KVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN--AKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQ 180 (487)
Q Consensus 103 ~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~--a~~d~l~iLk~~~~~~~~~~v~H~FsG~~~~ 180 (487)
-..++-.|+.+.. +.+ +.+.++.|.+.+++|.+|+.. +.+.+++.+++.... ..+.|+.-.+.+.
T Consensus 211 -g~~~~~~g~~~~~------~~~---l~~~v~~a~~~g~~v~vHa~gd~a~~~~l~a~~~~~~~---~~i~h~~~~~~~~ 277 (404)
T PF07969_consen 211 -GAPVHISGLPSFD------PEE---LEELVRAAREAGLQVAVHAIGDRAIDEALDAIEAARAR---GRIEHAELIDPDD 277 (404)
T ss_dssp -TSEEEETC--SSS------HHH---HHHHHHHHHHCT-EEEEEEESHHHHHHHHHHHHHHTCC---HEEEEHCBCCHHH
T ss_pred -ccccccccccccc------chh---HHHHHHHHHhcCCeeEEEEcCCchHHhHHHHHHhhccc---ceeeccccCCHHH
Confidence 1245556666432 222 799999999999999999954 567788888877542 2799999999999
Q ss_pred HHHHHcC
Q psy4448 181 AVDSLKT 187 (487)
Q Consensus 181 a~~~l~~ 187 (487)
...+.++
T Consensus 278 ~~~~~~l 284 (404)
T PF07969_consen 278 IERMAEL 284 (404)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998887
No 168
>PRK01211 dihydroorotase; Provisional
Probab=65.92 E-value=16 Score=38.93 Aligned_cols=62 Identities=13% Similarity=0.048 Sum_probs=40.2
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC------CHHhHHHHHHHHhcCCCeEEEeecC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT------NVEDSISSLKLAQSDERLYSTVGCH 75 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~------~~~~~~~~~~la~~~~~v~~avGiH 75 (487)
+||.|+|+..+-+ ...+|+..--+.|..-||+.++.+.. +.+.+....+.++... +.-+|+|
T Consensus 48 ~ID~HvH~r~pg~---------~~ked~~s~s~AAaaGGvTtv~dmPnt~P~~~~~e~~~~~~~~a~~~s--~vd~~~~ 115 (409)
T PRK01211 48 ATDIHVHFRTPGE---------TEKEDFSTGTLSAIFGGTTFIMDMPNNNIPIKDYNAFSDKLGRVAPKA--YVDFSLY 115 (409)
T ss_pred eEEeeeccCCCCC---------cccCcHHHHHHHHHcCCcEEEEECCCCCCCCChHHHHHHHHHHhccCc--eeeEEEE
Confidence 7999999987532 12578887777888889998887642 3455555555554432 3344444
No 169
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=65.66 E-value=8 Score=38.67 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=28.0
Q ss_pred CcEEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEE
Q psy4448 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIV 47 (487)
Q Consensus 1 m~~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~ 47 (487)
||.+|.|||..... | ...+.+|+++|...|++.+.+
T Consensus 1 ~~~~DLHvHSt~Sd------g-----~~~p~~vv~~A~~~g~~vlAi 36 (258)
T COG0613 1 WMKADLHVHTTASD------G-----GLTPREVVERAKAKGVDVLAI 36 (258)
T ss_pred CcceeeeEecccCC------C-----CCCHHHHHHHHHHcCCCEEEE
Confidence 78999999987532 2 345899999999999974433
No 170
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=65.53 E-value=1.5e+02 Score=29.55 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHhhhC-CCCEEEEecCc
Q psy4448 122 VETQLKYFRKQLDLSVTH-KLPLFLHCRNA 150 (487)
Q Consensus 122 ~e~Q~~vF~~qL~LA~el-~lPViIH~r~a 150 (487)
.+.+.+.+...++.+++. +.||+||+.++
T Consensus 56 ~~~E~~rl~~~v~~~~~~~~~plsiDT~~~ 85 (257)
T TIGR01496 56 PEEELNRVVPVIKALRDQPDVPISVDTYRA 85 (257)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEeCCCH
Confidence 344566677777777765 88888888764
No 171
>PRK00369 pyrC dihydroorotase; Provisional
Probab=65.38 E-value=18 Score=38.47 Aligned_cols=62 Identities=13% Similarity=0.020 Sum_probs=39.2
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC------CHHhHHHHHHHHhcCCCeEEEeecC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT------NVEDSISSLKLAQSDERLYSTVGCH 75 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~------~~~~~~~~~~la~~~~~v~~avGiH 75 (487)
+||.|+|+.++-+ ...+|++.--..|...||+.++.+.. +++.++...+.++... +.-+|+|
T Consensus 49 ~ID~HvH~r~pg~---------~~~ed~~sgs~AAa~GGvTtv~~mPnt~P~~~~~~~l~~~~~~a~~~~--~vd~~~~ 116 (392)
T PRK00369 49 AIDLHVHLRGLKL---------SYKEDVASGTSEAAYGGVTLVADMPNTIPPLNTPEAITEKLAELEYYS--RVDYFVY 116 (392)
T ss_pred EEEcccccCCCCC---------cccccHHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCC--eEEEEEE
Confidence 7999999987533 12578887777888889998887643 2344444444444332 3344444
No 172
>PRK09875 putative hydrolase; Provisional
Probab=65.21 E-value=11 Score=38.58 Aligned_cols=136 Identities=11% Similarity=0.142 Sum_probs=89.0
Q ss_pred CCChhhhHHHHHHHHHHhhhCCCCEEEEec--cchHHHHHHHHHhCCCCC--------------------CCcEEEEeeC
Q psy4448 243 SRNEPANIVYFRKQLDLSVTHKLPLFLHCR--NAKSDFIEIMKEYAPKLP--------------------RKGVIHSFDG 300 (487)
Q Consensus 243 ~~n~P~Q~~~F~~ql~lA~~~~lPl~iH~r--~a~~~~l~il~~~~~~~~--------------------~~gv~hsfsG 300 (487)
.+-.|..+++|+++...+++.|.||++|+- +..-+.+++|++...... ..|+|++|..
T Consensus 131 ~~it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~ 210 (292)
T PRK09875 131 GKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDT 210 (292)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEecc
Confidence 345788999999999999999999999962 255677999988653211 3799999965
Q ss_pred CcccccccccchhhHHHhhhC---C-CCceEeccCCCCCCCCCCCcchhhHhhhhhhhhhhccCCccCCCCCCccccHHH
Q psy4448 301 TPFQAVDSLKTKENLETVKSI---P-EDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQ 376 (487)
Q Consensus 301 ~~~~~~~~~k~~~~~e~v~~i---P-ldrlLlETD~P~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~P~~l~~ 376 (487)
.... ..+...+..+.++.+ . .|||||=+|..-.. +. ...++.....-+..
T Consensus 211 ~g~~--~~~pd~~r~~~i~~L~~~Gy~drilLS~D~~~~~--~~----------------------~~~gg~G~~~i~~~ 264 (292)
T PRK09875 211 IGKN--SYYPDEKRIAMLHALRDRGLLNRVMLSMDITRRS--HL----------------------KANGGYGYDYLLTT 264 (292)
T ss_pred CCCc--ccCCHHHHHHHHHHHHhcCCCCeEEEeCCCCCcc--cc----------------------cccCCCChhHHHHH
Confidence 2100 112223334666666 8 99999999973211 10 00122211222333
Q ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHhcC
Q psy4448 377 ILEIVAAVRGVEREKLGPIIHQNTLRLFF 405 (487)
Q Consensus 377 v~~~iA~ikg~~~~~va~~~~~N~~rlf~ 405 (487)
++..+ .-+|++.+++.+++.+|..|+|.
T Consensus 265 ~ip~L-~~~Gvse~~I~~m~~~NP~r~~~ 292 (292)
T PRK09875 265 FIPQL-RQSGFSQADVDVMLRENPSQFFQ 292 (292)
T ss_pred HHHHH-HHcCCCHHHHHHHHHHCHHHHhC
Confidence 33333 23499999999999999999984
No 173
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=65.12 E-value=1.5e+02 Score=29.22 Aligned_cols=186 Identities=16% Similarity=0.154 Sum_probs=99.9
Q ss_pred cEEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCCHH--------hHH----HHHHHHhcCCCeE
Q psy4448 2 KYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVE--------DSI----SSLKLAQSDERLY 69 (487)
Q Consensus 2 ~~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~~~--------~~~----~~~~la~~~~~v~ 69 (487)
+.+|.|.|.... - | ..++.+.+++|.+.|...+.++=-.+. ... ....+.+.+. +.
T Consensus 1 ~~~D~H~HT~~s-d-----g-----~~~~~e~~~~A~~~g~~~~~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~ 68 (237)
T COG1387 1 MKIDLHTHTVFS-D-----G-----EATPEEMVEAAIELGLEYIAITDHAPFLRVGLDAELLKYFIEEIRELKKEYD-IK 68 (237)
T ss_pred CCcccccCcccc-c-----C-----CCCHHHHHHHHHHcCCeEEEEeccccccccCCCHHHHHHHHHHHHHHHHhcC-ce
Confidence 358999998863 1 2 678888899999999987765522221 111 1222333444 22
Q ss_pred EEee----cCCCCCCCcCC---------------------CchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHH
Q psy4448 70 STVG----CHPTRCSEFEN---------------------DPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVET 124 (487)
Q Consensus 70 ~avG----iHP~~~~~~~~---------------------~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~ 124 (487)
.-.| +.|...-+..+ ...+..+.+...+.. +.+-.||=.|+.-.. ......
T Consensus 69 i~~G~E~~~~~~~~~d~~~~~~~~lD~vi~svH~~~~~~~~~~~~~~~~~~a~~~--~~v~il~H~~~~~~~--~~~~~~ 144 (237)
T COG1387 69 ILIGIEVDILPDGSLDFLDEILKELDYVIASVHELNFEDQDEEDYTERLIAAMSN--GAVDILAHPGGRLLG--RIDRGA 144 (237)
T ss_pred EEEeEEEEecCCCCcccchhhHhhcCEEEEEeccCCccccCHHHHHHHHHHHHcC--CCccEEecCCccccc--cccccc
Confidence 2222 23322111100 011112233333433 567777777775221 112344
Q ss_pred HHHHHHHHHHHhhhCCCCEEEEecCc----hHHHHHHHHHhCCCCCCcEEEEecCCCHHHHHHHHcCccchhHhhhcCCC
Q psy4448 125 QLKYFRKQLDLSVTHKLPLFLHCRNA----KSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPED 200 (487)
Q Consensus 125 Q~~vF~~qL~LA~el~lPViIH~r~a----~~d~l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~~~g~e~v~~iP~d 200 (487)
-.......+++|.+.+.-+-|++|.. ..+++.+.++.+. ...+=+.+=.+..+-.+-. +.+...-..++.+
T Consensus 145 ~~~~~~~~~~~~~~~g~aleins~~~~~~~~~~~~~~~~e~G~----~~~i~tDaH~~~~lg~~~~-~~~~~~~a~~~~~ 219 (237)
T COG1387 145 YKEDIEELIELAEKNGKALEINSRPGRLDPNSEILRLARELGV----KLAIGTDAHRPGDLGDMYF-GVKIARRAGLTKE 219 (237)
T ss_pred cHHHHHHHHHHHHHhCcEEeecCCcCccCchHHHHHHHHHhCC----eEEeecCcCChhhcccchH-HHHHHHHhcCCcc
Confidence 56778899999999999999999843 4567777777643 4555444433322221110 0011222356777
Q ss_pred ceeeccCC
Q psy4448 201 RLLLETDC 208 (487)
Q Consensus 201 riLlETD~ 208 (487)
+|+-..|.
T Consensus 220 ~i~~~~~~ 227 (237)
T COG1387 220 RIINTSDA 227 (237)
T ss_pred ceEeccch
Confidence 77766665
No 174
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=64.87 E-value=62 Score=30.49 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCCEEEEECCCHHhHHHHHH-HHhcCCCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEE
Q psy4448 30 IDHVLNRAWNAGLEKIIVTGTNVEDSISSLK-LAQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFG 108 (487)
Q Consensus 30 ~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~-la~~~~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIG 108 (487)
...+++.+...|. .+..+|..++..+++.+ +.++||++..+ |.|+.... +..+.+.+.+++..+.++.||
T Consensus 37 ~~~l~~~~~~~~~-~vfllG~~~~v~~~~~~~l~~~yP~l~i~-g~~g~f~~-------~~~~~i~~~I~~s~~dil~Vg 107 (177)
T TIGR00696 37 MEELCQRAGKEKL-PIFLYGGKPDVLQQLKVKLIKEYPKLKIV-GAFGPLEP-------EERKAALAKIARSGAGIVFVG 107 (177)
T ss_pred HHHHHHHHHHcCC-eEEEECCCHHHHHHHHHHHHHHCCCCEEE-EECCCCCh-------HHHHHHHHHHHHcCCCEEEEE
Confidence 4568888888885 67788999998887765 45678986543 65765521 122344445555457788875
Q ss_pred eeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEE
Q psy4448 109 EFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFL 145 (487)
Q Consensus 109 EIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViI 145 (487)
.|- ..|+.+..+ ....++.+|++
T Consensus 108 -lG~----------PkQE~~~~~---~~~~~~~~v~~ 130 (177)
T TIGR00696 108 -LGC----------PKQEIWMRN---HRHLKPDAVMI 130 (177)
T ss_pred -cCC----------cHhHHHHHH---hHHhCCCcEEE
Confidence 333 247765543 34444555655
No 175
>PRK13404 dihydropyrimidinase; Provisional
Probab=64.72 E-value=1.1e+02 Score=33.37 Aligned_cols=107 Identities=16% Similarity=0.203 Sum_probs=61.9
Q ss_pred HHHHHhcCCCEEEEE------CCCHHhHHHHHHHHhcCCCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEE
Q psy4448 34 LNRAWNAGLEKIIVT------GTNVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAF 107 (487)
Q Consensus 34 l~ra~~~GV~~ii~v------~~~~~~~~~~~~la~~~~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaI 107 (487)
+.++.+.|+..+-+. ..+.+.+.++++.++++... +.+|+... +.++.+.+.+ ..-
T Consensus 141 v~~l~~~G~~~iKi~~~~~~~~~~~~~l~~~~~~a~~~g~~---V~~Hae~~--------~~i~~~~~~~-------~~~ 202 (477)
T PRK13404 141 LPALIAQGYTSFKVFMTYDDLKLDDRQILDVLAVARRHGAM---VMVHAENH--------DMIAWLTKRL-------LAA 202 (477)
T ss_pred HHHHHHcCCCEEEEEecCCCCCCCHHHHHHHHHHHHhcCCE---EEEEeCCH--------HHHHHHHHHH-------HHC
Confidence 455566787654432 23456666777777765542 55788532 2222222222 223
Q ss_pred EeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCE-EEEecCchHHHHHHHHHh
Q psy4448 108 GEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPL-FLHCRNAKSDFIEIMKEY 161 (487)
Q Consensus 108 GEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPV-iIH~r~a~~d~l~iLk~~ 161 (487)
|.++...+. ...+.........+.++||++++.|+ +.|.- ..+.++++++.
T Consensus 203 G~~~~~~~~-~~rp~~~E~~~v~~~~~la~~~g~~~hi~Hvs--~~~~~~~i~~~ 254 (477)
T PRK13404 203 GLTAPKYHA-ISRPMLAEREATHRAIALAELVDVPILIVHVS--GREAAEQIRRA 254 (477)
T ss_pred CCcchhhcc-ccCCHHHHHHHHHHHHHHHHHhCCCEEEEECC--CHHHHHHHHHH
Confidence 444444332 22244667788899999999999999 78884 44555666544
No 176
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=63.86 E-value=6.9 Score=30.41 Aligned_cols=10 Identities=30% Similarity=0.743 Sum_probs=8.0
Q ss_pred EEEecccCCC
Q psy4448 3 YIDIGANLKD 12 (487)
Q Consensus 3 ~iD~H~HL~~ 12 (487)
+||+|+|+..
T Consensus 36 ~ID~H~H~~~ 45 (68)
T PF13594_consen 36 FIDMHTHLGE 45 (68)
T ss_dssp EEEEEE-TTT
T ss_pred eEeeeecccc
Confidence 8999999884
No 177
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.30 E-value=65 Score=33.30 Aligned_cols=102 Identities=22% Similarity=0.172 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhhhCCCCEEEEecCc--------------hHH---HHHHHHHhCCCC---C-CcEEEEe--cCCCHHH-
Q psy4448 125 QLKYFRKQLDLSVTHKLPLFLHCRNA--------------KSD---FIEIMKEYAPKL---P-RKGVIHS--FDGTPFQ- 180 (487)
Q Consensus 125 Q~~vF~~qL~LA~el~lPViIH~r~a--------------~~d---~l~iLk~~~~~~---~-~~~v~H~--FsG~~~~- 180 (487)
-.+.|+..=++|+++|.-|++|--.- ..+ -.++|...+... + ..+|||- +.|+.+.
T Consensus 92 ~~~~l~~iG~~a~~~~iRLS~Hp~qfi~LnS~~~evv~~Si~~L~~ha~~l~~mg~~~~~~~~~~iviH~Gg~~gdk~~a 171 (312)
T TIGR00629 92 AQKELREIGELAKTHQHRLTFHPGQFTQFTSPRESVVKSAIRDLAYHDEMLSAMKLAEQLNKDAVIIIHIGGAFGNKDTT 171 (312)
T ss_pred HHHHHHHHHHHHHHcCeEEEECCCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccCCCceEEEccCcCCCCHHHH
Confidence 34566666777777888888886541 111 112222222111 0 2678993 2255544
Q ss_pred HHHHHcCccchhHhhhcCCCceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccccCCCChhhhHHHHHHHHHHh
Q psy4448 181 AVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVYFRKQLDLS 260 (487)
Q Consensus 181 a~~~l~~~~g~e~v~~iP~driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~P~Q~~~F~~ql~lA 260 (487)
++++.+. -.++...+ ..||.+|||.=-.+ .+.-|.||
T Consensus 172 lerf~~n--~~~L~~~i-~~rL~lEnd~k~~s----------------------------------------l~evL~lc 208 (312)
T TIGR00629 172 LARFHQN--YKRLSQSI-KERLVLENDDVTWT----------------------------------------VEDLLPVC 208 (312)
T ss_pred HHHHHHH--HHHhhHHH-HhcEEeccCCCcCC----------------------------------------HHHHHHHH
Confidence 4444443 11222333 37999999973322 24568899
Q ss_pred hhCCCCEEE
Q psy4448 261 VTHKLPLFL 269 (487)
Q Consensus 261 ~~~~lPl~i 269 (487)
++++.|+++
T Consensus 209 ~e~~iP~v~ 217 (312)
T TIGR00629 209 EELNIPFVL 217 (312)
T ss_pred HhcCCCEEE
Confidence 999999884
No 178
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=62.32 E-value=91 Score=32.14 Aligned_cols=134 Identities=19% Similarity=0.168 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHhCCCCCCcEEEEecCCCHHHHHHHHcCccchhHhhhcCCC
Q psy4448 121 PVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPED 200 (487)
Q Consensus 121 ~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~~~g~e~v~~iP~d 200 (487)
+++.-+++.++|.+++.+++.|.++|. |..+.+.++++++.
T Consensus 50 Dk~~Ae~Li~~~~elsd~tg~p~~~~v--------------------------~~~~~eam~k~I~~------------- 90 (308)
T PRK00979 50 DKEKAEALINRQEELSDKTGNPALLDV--------------------------VGESPEAMEKYIDF------------- 90 (308)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEE--------------------------ecChHHHHHHHHHH-------------
Q ss_pred ceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccccCCCChhhhHHHHHHHHHHhhhCCC--CEEEEeccc--hH
Q psy4448 201 RLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVYFRKQLDLSVTHKL--PLFLHCRNA--KS 276 (487)
Q Consensus 201 riLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~P~Q~~~F~~ql~lA~~~~l--Pl~iH~r~a--~~ 276 (487)
+--.||.|++= ....-++-++=|+.+++.|+ ..++-|.+. .+
T Consensus 91 -v~~~~d~Pl~I---------------------------------DSt~p~a~eaaLk~~~e~G~~gR~IiNSIn~e~~~ 136 (308)
T PRK00979 91 -VSEITDLPFLI---------------------------------DSTSPEARIAAAKYATELGLADRAIYNSINPSIEE 136 (308)
T ss_pred -HHhcCCCCEEE---------------------------------eCCCHHHHHHHHHHhhhcCCCCceEEEeccCCCCH
Q ss_pred HHHHHHHHhCCCCCCCcEEEEeeCCcccccccccchhh---------HHHhhhCCCCceEecc
Q psy4448 277 DFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKTKEN---------LETVKSIPEDRLLLET 330 (487)
Q Consensus 277 ~~l~il~~~~~~~~~~gv~hsfsG~~~~~~~~~k~~~~---------~e~v~~iPldrlLlET 330 (487)
+.+++++++.. ...|..+|+.....+.--++-.+. ++.++...++++++-+
T Consensus 137 eel~llk~yg~---aavIvLa~d~~~pt~e~Rl~i~~~~~~~~~~gll~~a~~~GI~diliDp 196 (308)
T PRK00979 137 EEIEALKESDI---KAAIVLAFDPMDPSVEGRLKMLEEGGKGQDKGMLPLAEEAGIERPLVDT 196 (308)
T ss_pred HHHHHHHHhCC---ceEEEEEcCCCCCCHHHHHHHHHhccccchHHHHHHHHHcCCCcEEecc
No 179
>PRK04250 dihydroorotase; Provisional
Probab=61.37 E-value=15 Score=39.06 Aligned_cols=62 Identities=15% Similarity=0.234 Sum_probs=38.7
Q ss_pred EEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCC------HHhHHHHHHHHhcCCCeEEEeecC
Q psy4448 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTN------VEDSISSLKLAQSDERLYSTVGCH 75 (487)
Q Consensus 3 ~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~------~~~~~~~~~la~~~~~v~~avGiH 75 (487)
+||+|+|+.+... ...+++....+.+...|++.++.+..+ ++.+....+.++... +.-+|+|
T Consensus 49 ~ID~HvH~~~~~~---------~~~e~~~~~~~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~--~vd~~~~ 116 (398)
T PRK04250 49 LIDVHVHLRDFEE---------SYKETIESGTKAALHGGITLVFDMPNTKPPIMDEKTYEKRMRIAEKKS--YADYALN 116 (398)
T ss_pred EEeccccccCCCC---------CcHHHHHHHHHHHHhCCeEEEEECCCCCCCCCcHHHHHHHHHHhCcCc--eeeEEEE
Confidence 8999999954211 113466677778888999988876432 455555555655433 3334444
No 180
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=61.18 E-value=92 Score=30.61 Aligned_cols=60 Identities=12% Similarity=0.165 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCC-EEEEe
Q psy4448 88 GYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLP-LFLHC 147 (487)
Q Consensus 88 ~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lP-ViIH~ 147 (487)
+..+.+.++++++.=++.+.|-..++....+...++...+.+++.+++|.+++-+ |++|.
T Consensus 45 ~~~~~l~~~~~~~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~ 105 (273)
T smart00518 45 ETAEKFKEALKENNIDVSVHAPYLINLASPDKEKVEKSIERLIDEIKRCEELGIKALVFHP 105 (273)
T ss_pred HHHHHHHHHHHHcCCCEEEECCceecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 4466777777663222333332112211101112445567899999999999887 55776
No 181
>KOG4245|consensus
Probab=61.16 E-value=27 Score=33.71 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=49.0
Q ss_pred HhcCCCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCC
Q psy4448 62 AQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKL 141 (487)
Q Consensus 62 a~~~~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~l 141 (487)
+.+||.-+..+|--|-.+. +..++++++...+ =.+.++ |||-.- ...+.+.| -|--..++|.+++.
T Consensus 60 ~~kfp~r~v~lgtlpmn~~------e~avee~~rcvk~--lg~~g~-eigshv---~e~~ld~~--d~~ply~~~e~l~~ 125 (297)
T KOG4245|consen 60 CQKFPDRFVGLGTLPMNAP------ELAVEEMERCVKE--LGFKGF-EIGSHV---AEKDLDAQ--DFFPLYAAAEELKC 125 (297)
T ss_pred HHhcchhccccCccCCcCH------HHHHHHHHHHHHH--cCCCce-eecccc---ccccCchH--HHhHHHHHHHhhee
Confidence 5678887889999997664 3456788888765 123344 555432 22223333 46677889999999
Q ss_pred CEEEEecC
Q psy4448 142 PLFLHCRN 149 (487)
Q Consensus 142 PViIH~r~ 149 (487)
.+.+|--+
T Consensus 126 ~lfvhpwd 133 (297)
T KOG4245|consen 126 SLFVHPWD 133 (297)
T ss_pred eEEecchh
Confidence 99999765
No 182
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=60.67 E-value=79 Score=31.76 Aligned_cols=104 Identities=16% Similarity=0.229 Sum_probs=61.5
Q ss_pred CHHHHHHHHHhcCCCEEEEECC-------CHHhHHHHHHHHhcC--CCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHh
Q psy4448 29 DIDHVLNRAWNAGLEKIIVTGT-------NVEDSISSLKLAQSD--ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKE 99 (487)
Q Consensus 29 d~~~vl~ra~~~GV~~ii~v~~-------~~~~~~~~~~la~~~--~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~ 99 (487)
.+...++.+.+.||..+++.|+ +.++..++++.+.+. +++-..+|+=... .++.++. .+.+.+
T Consensus 20 ~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s-------~~~~i~~-a~~a~~ 91 (285)
T TIGR00674 20 ALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNA-------TEEAISL-TKFAED 91 (285)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCcc-------HHHHHHH-HHHHHH
Confidence 3456778888899999998876 567777777654432 3343445542111 1233333 333333
Q ss_pred cCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEec
Q psy4448 100 GGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCR 148 (487)
Q Consensus 100 ~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r 148 (487)
-.+.+| -+...+|. . -.|.++++..-++|...++||+|..-
T Consensus 92 --~Gad~v-~v~pP~y~-~----~~~~~i~~~~~~i~~~~~~pi~lYn~ 132 (285)
T TIGR00674 92 --VGADGF-LVVTPYYN-K----PTQEGLYQHFKAIAEEVDLPIILYNV 132 (285)
T ss_pred --cCCCEE-EEcCCcCC-C----CCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 133344 23444443 1 13678888888888888999998853
No 183
>PTZ00124 adenosine deaminase; Provisional
Probab=60.34 E-value=53 Score=34.55 Aligned_cols=72 Identities=13% Similarity=0.154 Sum_probs=49.3
Q ss_pred HHHHHHHHhhhCCCCEEEEecCc--h---HHHHHHHHHhCCCCCCcEEEEecC--CCHHHHHHHHcCccchhHhhhcCCC
Q psy4448 128 YFRKQLDLSVTHKLPLFLHCRNA--K---SDFIEIMKEYAPKLPRKGVIHSFD--GTPFQAVDSLKTKENLETVKSIPED 200 (487)
Q Consensus 128 vF~~qL~LA~el~lPViIH~r~a--~---~d~l~iLk~~~~~~~~~~v~H~Fs--G~~~~a~~~l~~~~g~e~v~~iP~d 200 (487)
-|...++.|++.|+++.+|+-.+ . .++.+.+...++ .-|=|++. .+++.++.+.+. +. .+..+|..
T Consensus 207 ~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~----~RIGHG~~~~~d~~l~~~l~~~--~I-~lEvCPtS 279 (362)
T PTZ00124 207 PFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVLKV----KRIGHGIRVAESQELIDMVKEK--DI-LLEVCPIS 279 (362)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHhCC----CccccccccCCCHHHHHHHHHc--CC-eEEECCcc
Confidence 48888999999999999999864 2 245555555543 46778877 467777777765 22 34556666
Q ss_pred ceeecc
Q psy4448 201 RLLLET 206 (487)
Q Consensus 201 riLlET 206 (487)
++.+.+
T Consensus 280 N~~~~~ 285 (362)
T PTZ00124 280 NVLLNN 285 (362)
T ss_pred hhhhhc
Confidence 666553
No 184
>PRK01060 endonuclease IV; Provisional
Probab=59.96 E-value=1.2e+02 Score=30.04 Aligned_cols=106 Identities=11% Similarity=0.113 Sum_probs=58.9
Q ss_pred CcEEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCCHHhHHHHHHHHhcCCCeEEEeecCCCCCC
Q psy4448 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCS 80 (487)
Q Consensus 1 m~~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~la~~~~~v~~avGiHP~~~~ 80 (487)
||.+=+|.++. .+++++++.+.+.|++.+=+....|. .|...
T Consensus 1 ~~~~g~~~~~~----------------~~~~~~l~~~~~~G~d~vEl~~~~p~----------------------~~~~~ 42 (281)
T PRK01060 1 MKLIGAHVSAA----------------GGLEGAVAEAAEIGANAFMIFTGNPQ----------------------QWKRK 42 (281)
T ss_pred CCeEEEeeecC----------------CCHHHHHHHHHHcCCCEEEEECCCCC----------------------CCcCC
Confidence 67777776543 35889999999999986532211111 11111
Q ss_pred CcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCC-CCC---CCChHHHHHHHHHHHHHhhhCCCC-EEEEec
Q psy4448 81 EFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYD-RVQ---YCPVETQLKYFRKQLDLSVTHKLP-LFLHCR 148 (487)
Q Consensus 81 ~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~-~~~---~~~~e~Q~~vF~~qL~LA~el~lP-ViIH~r 148 (487)
.. .++.++.+++++.++.=.+.++---+ .|. ... ...++.-.+.+++.+++|.+++.+ |++|.-
T Consensus 43 ~~---~~~~~~~lk~~~~~~gl~~~~~~~h~-~~~~nl~~~d~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G 111 (281)
T PRK01060 43 PL---EELNIEAFKAACEKYGISPEDILVHA-PYLINLGNPNKEILEKSRDFLIQEIERCAALGAKLLVFHPG 111 (281)
T ss_pred CC---CHHHHHHHHHHHHHcCCCCCceEEec-ceEecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 12 13456778888876311211111111 121 111 112344567799999999999998 557763
No 185
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=59.53 E-value=1.6e+02 Score=27.96 Aligned_cols=58 Identities=17% Similarity=0.151 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhhCCCCEEEEecCch-------HHHHHHHHHhCCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 127 KYFRKQLDLSVTHKLPLFLHCRNAK-------SDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 127 ~vF~~qL~LA~el~lPViIH~r~a~-------~d~l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
--|+..|+++.+.+..++|-..... +.+.+++++++... .++++.+| +.+.++.+.+.
T Consensus 87 ptl~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~-~~v~~~Sf--~~~~l~~~~~~ 151 (229)
T cd08562 87 PTLADVLELARELGLGLNLEIKPDPGDEALTARVVAAALRELWPHA-SKLLLSSF--SLEALRAARRA 151 (229)
T ss_pred CCHHHHHHHHHhcCCEEEEEECCCCCccHHHHHHHHHHHHHhcCCc-CCEEEECC--CHHHHHHHHHh
Confidence 3467777788777888888876532 34677788776421 36888888 56666665554
No 186
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=59.48 E-value=45 Score=33.97 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHhcCCCEEEEECCCH----------HhHHHHHHHHhcC-CC-eEEEeecCCCCCCC
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTGTNV----------EDSISSLKLAQSD-ER-LYSTVGCHPTRCSE 81 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~~~~----------~~~~~~~~la~~~-~~-v~~avGiHP~~~~~ 81 (487)
..+.+.+..+.+.||+.++....|+ .+...++++.+++ .. +..+++.+|..-++
T Consensus 92 ~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~ 157 (291)
T COG0685 92 IEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRGGIFDIGVAAYPEGHPE 157 (291)
T ss_pred HHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHHhcCCeEEEEEEeCCCCCcc
Confidence 4677888999999999999998877 2555677777754 44 78888999976543
No 187
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=59.37 E-value=2.1e+02 Score=29.17 Aligned_cols=139 Identities=14% Similarity=0.136 Sum_probs=82.8
Q ss_pred CHHHHHHHHHhcCCCEEEEECC-------CHHhHHHHHHHHhcC--CCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHh
Q psy4448 29 DIDHVLNRAWNAGLEKIIVTGT-------NVEDSISSLKLAQSD--ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKE 99 (487)
Q Consensus 29 d~~~vl~ra~~~GV~~ii~v~~-------~~~~~~~~~~la~~~--~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~ 99 (487)
.+.++++...++|+..++++|+ +.++-.++++.+.+. +++-.-+|+=-.. ..+.+ ++.+.+++
T Consensus 26 a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~-------t~eai-~lak~a~~ 97 (299)
T COG0329 26 ALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNS-------TAEAI-ELAKHAEK 97 (299)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCc-------HHHHH-HHHHHHHh
Confidence 4556788888999999999987 466777777765543 3332333432221 12222 34444544
Q ss_pred cCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc------hHHHHHHHHHhCCCCCCcEEEEe
Q psy4448 100 GGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA------KSDFIEIMKEYAPKLPRKGVIHS 173 (487)
Q Consensus 100 ~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a------~~d~l~iLk~~~~~~~~~~v~H~ 173 (487)
-.+.||= +=-.||. +..|..+++..-.+|...++|++|-..-. ..+++.-|.+.+ .-+-+--
T Consensus 98 --~Gad~il-~v~PyY~-----k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~----nivgiKd 165 (299)
T COG0329 98 --LGADGIL-VVPPYYN-----KPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEHP----NIVGVKD 165 (299)
T ss_pred --cCCCEEE-EeCCCCc-----CCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCC----CEEEEEe
Confidence 1233331 2223333 12388888888888888899999988532 335555554432 1345566
Q ss_pred cCCCHHHHHHHHcC
Q psy4448 174 FDGTPFQAVDSLKT 187 (487)
Q Consensus 174 FsG~~~~a~~~l~~ 187 (487)
.+|+...+++++..
T Consensus 166 ~~gd~~~~~~~~~~ 179 (299)
T COG0329 166 SSGDLDRLEEIIAA 179 (299)
T ss_pred CCcCHHHHHHHHHh
Confidence 78888888876654
No 188
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=58.96 E-value=1.2e+02 Score=31.62 Aligned_cols=160 Identities=17% Similarity=0.145 Sum_probs=83.4
Q ss_pred EecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEEC-----CCHHhHHHHHHHHhcCCCeEEEeecCCCCC
Q psy4448 5 DIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTG-----TNVEDSISSLKLAQSDERLYSTVGCHPTRC 79 (487)
Q Consensus 5 D~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~-----~~~~~~~~~~~la~~~~~v~~avGiHP~~~ 79 (487)
|.|.||+..-- .--++.+....++|++-|=.-- ...+.+...+..|+.+.. .+|+-=--+
T Consensus 110 ~fHiHLYT~g~------------~~~~e~l~~L~eAGLDEIRfHp~~~~~~~~e~~i~~l~~A~~~g~---dvG~EiPai 174 (353)
T COG2108 110 DFHIHLYTTGI------------LATEEALKALAEAGLDEIRFHPPRPGSKSSEKYIENLKIAKKYGM---DVGVEIPAI 174 (353)
T ss_pred ceeEEEeeccc------------cCCHHHHHHHHhCCCCeEEecCCCccccccHHHHHHHHHHHHhCc---cceeecCCC
Confidence 78999997321 2235778888999998763321 245666677777777653 345431111
Q ss_pred CCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHH
Q psy4448 80 SEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMK 159 (487)
Q Consensus 80 ~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk 159 (487)
+. .++++-++.+++. |.|+||-.++ ..+.-..=.++.++-.-...--.+.-...+.+..+.+++
T Consensus 175 pg----~e~~i~e~~~~~~----------~~~~~FlNiN--ELE~sE~N~~~l~~~gy~~~~~~~~av~GS~E~~Lk~l~ 238 (353)
T COG2108 175 PG----EEEAILEFAKALD----------ENGLDFLNIN--ELEFSENNYENLLERGYKISDDGSSAVAGSLEAALKVLK 238 (353)
T ss_pred cc----hHHHHHHHHHHHH----------hcccceeeee--eeeeccchHHHHHhcCceeccCCcccccchHHHHHHHHH
Confidence 11 1233444445444 4666664322 111111112222222111111112234556778888887
Q ss_pred HhCCCCCCcEEEEecCCCHHHHHHHHcCccchhHhhhcCC
Q psy4448 160 EYAPKLPRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPE 199 (487)
Q Consensus 160 ~~~~~~~~~~v~H~FsG~~~~a~~~l~~~~g~e~v~~iP~ 199 (487)
..... ...-+|-.|+....+.++-.. -++..+..+.
T Consensus 239 ~~~~~--~~l~vH~Css~~KDavQ~r~R--l~r~Akn~ak 274 (353)
T COG2108 239 WAEEN--WDLTVHYCSSKFKDAVQLRNR--LKRMAKNVAK 274 (353)
T ss_pred HHhcc--cCceEEECchhhhHHHHHHHH--HHHHHhhcCC
Confidence 76542 256789888887777765443 3344444443
No 189
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=58.74 E-value=78 Score=32.67 Aligned_cols=107 Identities=21% Similarity=0.310 Sum_probs=69.1
Q ss_pred hhCCCCEEE----------EeccchHHHHHHHHHhCCCCCCCcEEEEeeCCcccccccccch-----------hhH-HHh
Q psy4448 261 VTHKLPLFL----------HCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKTK-----------ENL-ETV 318 (487)
Q Consensus 261 ~~~~lPl~i----------H~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~~~~~~~~~k~~-----------~~~-e~v 318 (487)
+-...|++. |.|+--++.++.+.+. |=++|++... ..+... +.. -++
T Consensus 191 ~~s~~PviaSHSn~ral~~h~RNltDe~iraia~~-------GGviGi~~~~----~fl~~~~~~~~~~~~~~~Hi~y~~ 259 (320)
T PF01244_consen 191 EISKKPVIASHSNARALCPHPRNLTDEQIRAIAER-------GGVIGINFYP----AFLGDDWDPRASLDDLVDHIDYIV 259 (320)
T ss_dssp HH-SSEEEECCEEBTTTS--TTSB-HHHHHHHHHT-------T-EEEEESSH----HHHSTTHSSG-BHHHHHHHHHHHH
T ss_pred hhcCCCEEEeccChHhhCCCCCCCCHHHHHHHHHC-------CcEEEEEcch----hhhcccccccccHHHHHHHHHHHH
Confidence 344679663 5678889999999885 3367777632 112211 112 367
Q ss_pred hhCCCCceEeccCCCCCCCCCCCcchhhHhhhhhhhhhhccCCccCCCCCCccccHHHHHHHHHHhhCCCHHHHHHHHHH
Q psy4448 319 KSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQ 398 (487)
Q Consensus 319 ~~iPldrlLlETD~P~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~P~~l~~v~~~iA~ikg~~~~~va~~~~~ 398 (487)
+.+..|.+=+=||--.....| .+-+.+..++.+.+.+.+ +|.+.+++..+++.
T Consensus 260 ~l~G~dhVgiGsDfdg~~~~~--------------------------~gl~~~~~~~~l~~~L~~-rG~s~~~i~kI~g~ 312 (320)
T PF01244_consen 260 DLVGIDHVGIGSDFDGIDGPP--------------------------EGLEDPSDLPNLTEELLK-RGYSEEDIEKILGG 312 (320)
T ss_dssp HHH-GGGEEEE--BTTTSSHB--------------------------BTBSSGGGHHHHHHHHHH-TTS-HHHHHHHHTH
T ss_pred HhcCCCeEEECcccCCCCCCC--------------------------CccCCHHHHHHHHHHHHH-CCCCHHHHHHHHhH
Confidence 788999999999973321111 234468889999999977 89999999999999
Q ss_pred HHHHhcC
Q psy4448 399 NTLRLFF 405 (487)
Q Consensus 399 N~~rlf~ 405 (487)
|+.|+|+
T Consensus 313 N~lRv~~ 319 (320)
T PF01244_consen 313 NFLRVLR 319 (320)
T ss_dssp HHHHHHH
T ss_pred hHHHHhc
Confidence 9999973
No 190
>PRK02925 glucuronate isomerase; Reviewed
Probab=58.48 E-value=6.1 Score=42.77 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=24.4
Q ss_pred hhhhHHHH-----HHHHHHhhhCCCCEEEEe---ccchHHHHHHH
Q psy4448 246 EPANIVYF-----RKQLDLSVTHKLPLFLHC---RNAKSDFIEIM 282 (487)
Q Consensus 246 ~P~Q~~~F-----~~ql~lA~~~~lPl~iH~---r~a~~~~l~il 282 (487)
.+.....| ...-++..+.|+..=||. |+....+++-+
T Consensus 266 t~~E~~~f~~~~l~~la~~y~e~gwvmQlH~Ga~Rn~n~~~~~~l 310 (466)
T PRK02925 266 TEEEIAQFRTAMLTELARMYAEDGWVMQLHIGALRNNNTRMFKKL 310 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCeEEeecccccCCCHHHHHHh
Confidence 34444444 444566779999999996 77666666554
No 191
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=57.52 E-value=1e+02 Score=28.58 Aligned_cols=99 Identities=19% Similarity=0.218 Sum_probs=62.1
Q ss_pred CHHHHHHHHHhcCCCEEEEECCCHHhHHHHHH-HHhcCCCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEE
Q psy4448 29 DIDHVLNRAWNAGLEKIIVTGTNVEDSISSLK-LAQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAF 107 (487)
Q Consensus 29 d~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~-la~~~~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaI 107 (487)
=+.++++.+...|. .+..+|.+++..+++.+ +.++||++- .+|.|+-+-. ++..+.+.+.++...+.++.|
T Consensus 36 l~~~l~~~~~~~~~-~ifllG~~~~~~~~~~~~l~~~yP~l~-ivg~~~g~f~------~~~~~~i~~~I~~~~pdiv~v 107 (172)
T PF03808_consen 36 LFPDLLRRAEQRGK-RIFLLGGSEEVLEKAAANLRRRYPGLR-IVGYHHGYFD------EEEEEAIINRINASGPDIVFV 107 (172)
T ss_pred HHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHCCCeE-EEEecCCCCC------hhhHHHHHHHHHHcCCCEEEE
Confidence 35678888888876 57788999988887765 566789865 4555543322 123455555666555788887
Q ss_pred EeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC
Q psy4448 108 GEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN 149 (487)
Q Consensus 108 GEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~ 149 (487)
| .|- ..|+.+..+.. ..++-+|+|-+-.
T Consensus 108 g-lG~----------PkQE~~~~~~~---~~l~~~v~i~vG~ 135 (172)
T PF03808_consen 108 G-LGA----------PKQERWIARHR---QRLPAGVIIGVGG 135 (172)
T ss_pred E-CCC----------CHHHHHHHHHH---HHCCCCEEEEECc
Confidence 5 333 34776665543 4455666665543
No 192
>PF02614 UxaC: Glucuronate isomerase; InterPro: IPR003766 Uronate isomerase (also known as glucuronate isomerase) catalyses the reaction D-glucuronate to D-fructuronate and also converts D-galacturonate to D-tagaturonate [].; GO: 0008880 glucuronate isomerase activity, 0006064 glucuronate catabolic process; PDB: 2QEE_B 3HKA_A 3HK8_A 2PNK_H 2Q6E_A 3HK7_A 3HK5_B 3HK9_A 2Q08_L 1J5S_B ....
Probab=57.18 E-value=2.4 Score=45.96 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHhhhCCCCEEEEe---ccchHHHHHHH
Q psy4448 248 ANIVYFRKQLDLSVTHKLPLFLHC---RNAKSDFIEIM 282 (487)
Q Consensus 248 ~Q~~~F~~ql~lA~~~~lPl~iH~---r~a~~~~l~il 282 (487)
.+..++....+++.+.|+++=||- |+....+++-+
T Consensus 273 ~~~~ll~~l~~~~~e~g~vmQlHiGa~Rn~n~~~~~~l 310 (462)
T PF02614_consen 273 FRTYLLWELAKMYAERGWVMQLHIGALRNNNSRMFPRL 310 (462)
T ss_dssp HHHHHHHHHHHHHHHHT-EEEEEE-EETTSSHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCeeEEecCcccCCCHHHHHHh
Confidence 344556667788999999999986 66655444433
No 193
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=56.71 E-value=2.7e+02 Score=29.64 Aligned_cols=149 Identities=16% Similarity=0.193 Sum_probs=78.0
Q ss_pred CHHHHHHHHHhcCCCEEEEECC-CH---HhHH----HHHHHHhcC-----CCeEEEeecCCCCCCCcCCCchhhHHHHHH
Q psy4448 29 DIDHVLNRAWNAGLEKIIVTGT-NV---EDSI----SSLKLAQSD-----ERLYSTVGCHPTRCSEFENDPEGYLQSLDK 95 (487)
Q Consensus 29 d~~~vl~ra~~~GV~~ii~v~~-~~---~~~~----~~~~la~~~-----~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ 95 (487)
..+.+++.+.+.|++.++..+. ++ +... ...++.+.+ +.+...+|.|-.+. . .++.++.+.+
T Consensus 138 ~~~~~~~a~~~~GiR~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~~~~--~---s~~~l~~~~~ 212 (442)
T PRK07203 138 SLFTIADAAKKVGLRAMLCYETSDRDGEKELQEGVEENIRFIKHIDEAKDDMVEAMFGLHASFT--L---SDATLEKCRE 212 (442)
T ss_pred hHHHHHHHHHHhCCeEEEecccccCCcchhHHHHHHHHHHHHHHhcCCCCCceEEEEccCCCcC--c---CHHHHHHHHH
Confidence 3456778888999986654321 11 1111 222333322 24667777773222 1 2345666677
Q ss_pred HHHhc-CCCEEEEEeeCCCCCCCCCCChHHHHHHHH----HHHHHhhhCC----CCEEEEecCchHHHHHHHHHhCCCCC
Q psy4448 96 IIKEG-GKKVVAFGEFGLDYDRVQYCPVETQLKYFR----KQLDLSVTHK----LPLFLHCRNAKSDFIEIMKEYAPKLP 166 (487)
Q Consensus 96 ll~~~-~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~----~qL~LA~el~----lPViIH~r~a~~d~l~iLk~~~~~~~ 166 (487)
+..+. .+--+-++|..-+ ...+++ .-++...+++ ..+..||....++-+++|++.+.
T Consensus 213 lA~~~g~~i~~H~~E~~~e-----------~~~~~~~~g~~~v~~l~~~Gll~~~~~~~H~~~~~~~d~~~la~~g~--- 278 (442)
T PRK07203 213 AVKETGRGYHIHVAEGIYD-----------VSDSHKKYGKDIVERLADFGLLGEKTLAAHCIYLSDEEIDLLKETDT--- 278 (442)
T ss_pred HHHHcCCcEEEEecCChHH-----------HHHHHHHcCCCHHHHHHhCCCCCCCcEEEEeecCCHHHHHHHHhcCC---
Confidence 66652 1112233332211 111111 1334444443 35679999999888999988743
Q ss_pred CcEEEEecCCCH------HHHHHHHcCccchhHhhhcCCCceeeccCCC
Q psy4448 167 RKGVIHSFDGTP------FQAVDSLKTKENLETVKSIPEDRLLLETDCP 209 (487)
Q Consensus 167 ~~~v~H~FsG~~------~~a~~~l~~~~g~e~v~~iP~driLlETD~P 209 (487)
.|.||-..+. .-+.++++. |. ++-+.||+.
T Consensus 279 --~v~~~P~sn~~l~~g~~p~~~~~~~--Gv---------~v~lGtD~~ 314 (442)
T PRK07203 279 --FVVHNPESNMGNAVGYNPVLEMIKN--GI---------LLGLGTDGY 314 (442)
T ss_pred --eEEECchhhhhcccCCCCHHHHHHC--CC---------eEEEcCCCC
Confidence 6899976542 122333333 32 478899974
No 194
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=55.59 E-value=53 Score=37.04 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=7.3
Q ss_pred HHHHHHhcCCCEEEEEC
Q psy4448 33 VLNRAWNAGLEKIIVTG 49 (487)
Q Consensus 33 vl~ra~~~GV~~ii~v~ 49 (487)
.+..+...||+.++++.
T Consensus 401 ~L~~~~~~Gv~nILaLr 417 (612)
T PRK08645 401 HLLGLHALGIRNVLAIT 417 (612)
T ss_pred HHHHHHHcCCceEEEcc
Confidence 33334444444444443
No 195
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=54.63 E-value=31 Score=37.23 Aligned_cols=62 Identities=11% Similarity=0.051 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecC--chHHHHHHHHHhCCC----CCCcEEEEecCCCHHHHHHHHcC
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRN--AKSDFIEIMKEYAPK----LPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~--a~~d~l~iLk~~~~~----~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
.+.+++.++.|.+.++||.+|+-+ +.+.+++.+++.... .....+.||..-+.+.++++.++
T Consensus 294 ~e~l~~~~~~a~~~g~~v~~Ha~gd~~i~~~l~~~~~~~~~~g~~~~r~~i~H~~~~~~~~~~~l~~~ 361 (479)
T cd01300 294 PEELEELVRAADEAGLQVAIHAIGDRAVDTVLDALEAALKDNPRADHRHRIEHAQLVSPDDIPRFAKL 361 (479)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHHHHHhcCCCCCCceeeecccCCHHHHHHHHHc
Confidence 567899999999999999999975 234445554433211 11247899999999999998887
No 196
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=54.63 E-value=2.3e+02 Score=28.13 Aligned_cols=95 Identities=20% Similarity=0.251 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCCEEEEECCCHHhHHHHHHH-HhcCCCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEE
Q psy4448 30 IDHVLNRAWNAGLEKIIVTGTNVEDSISSLKL-AQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFG 108 (487)
Q Consensus 30 ~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~l-a~~~~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIG 108 (487)
..++++.+...|. ++..+|.+++..+++.+. .++| ++.. +|.|.-+-. .++ .+.+.+.+....+.++.||
T Consensus 94 ~~~ll~~~~~~~~-~v~llG~~~~v~~~a~~~l~~~y-~l~i-~g~~~Gyf~-----~~e-~~~i~~~I~~s~~dil~Vg 164 (243)
T PRK03692 94 WEALMARAGKEGT-PVFLVGGKPEVLAQTEAKLRTQW-NVNI-VGSQDGYFT-----PEQ-RQALFERIHASGAKIVTVA 164 (243)
T ss_pred HHHHHHHHHhcCC-eEEEECCCHHHHHHHHHHHHHHh-CCEE-EEEeCCCCC-----HHH-HHHHHHHHHhcCCCEEEEE
Confidence 4567888888884 688889999988888764 5667 6554 576643321 122 2344445555457788875
Q ss_pred eeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEe
Q psy4448 109 EFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHC 147 (487)
Q Consensus 109 EIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~ 147 (487)
.|- ..|+.+..+ ....++.+|++.+
T Consensus 165 -lG~----------PkQE~~~~~---~~~~~~~~v~~gv 189 (243)
T PRK03692 165 -MGS----------PKQEIFMRD---CRLVYPDALYMGV 189 (243)
T ss_pred -CCC----------cHHHHHHHH---HHHhCCCCEEEEe
Confidence 332 247776654 4445566776654
No 197
>PRK09356 imidazolonepropionase; Validated
Probab=54.27 E-value=2.4e+02 Score=29.43 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCch-HHHHHHHHHhCCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNAK-SDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a~-~d~l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
.+.+++.+++|.++++||.+|+-... ..-++.+.+.+. ..+.||+.-+.+.++.+.+.
T Consensus 221 ~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~~----~~~~H~~~~~~~~~~~la~~ 279 (406)
T PRK09356 221 VEQSERVLEAAKALGLPVKIHAEQLSNLGGAELAAEYGA----LSADHLEYLDEAGIAAMAEA 279 (406)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEecccCCCHHHHHHHcCC----cEehHhhcCCHHHHHHHHHh
Confidence 45677889999999999999995311 112344433332 35779988888887777665
No 198
>PRK07094 biotin synthase; Provisional
Probab=54.07 E-value=2.5e+02 Score=28.47 Aligned_cols=46 Identities=7% Similarity=-0.003 Sum_probs=28.4
Q ss_pred HHHHHHHHhhh-CCCCEEEEecCchHHHHHHHHHhCCCCCCcEEEEecCCC
Q psy4448 128 YFRKQLDLSVT-HKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGT 177 (487)
Q Consensus 128 vF~~qL~LA~e-l~lPViIH~r~a~~d~l~iLk~~~~~~~~~~v~H~FsG~ 177 (487)
.+...++..++ .++.+.++...-.++.++.|++.+. ..+.+++.+.
T Consensus 104 ~l~~l~~~i~~~~~l~i~~~~g~~~~e~l~~Lk~aG~----~~v~~glEs~ 150 (323)
T PRK07094 104 KIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGA----DRYLLRHETA 150 (323)
T ss_pred HHHHHHHHHHccCCceEEEecCCCCHHHHHHHHHcCC----CEEEeccccC
Confidence 34455555554 5667767665556778888887654 4566666544
No 199
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=54.02 E-value=51 Score=36.60 Aligned_cols=66 Identities=15% Similarity=0.068 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhhhCCCCEEEEecC--chHHHHHHHHHhCCCCC----CcEEEEecCCCHHHHHHHHcCc
Q psy4448 123 ETQLKYFRKQLDLSVTHKLPLFLHCRN--AKSDFIEIMKEYAPKLP----RKGVIHSFDGTPFQAVDSLKTK 188 (487)
Q Consensus 123 e~Q~~vF~~qL~LA~el~lPViIH~r~--a~~d~l~iLk~~~~~~~----~~~v~H~FsG~~~~a~~~l~~~ 188 (487)
-...+-|+..++-|.+.++||.+|+-. |.+.+++.+++.....+ .-.|.|.=.-+++.+.++.+++
T Consensus 317 l~~~e~l~~~v~~a~~~gl~v~vHAiGD~Av~~~LdafE~~~~~~~~~~~r~rieH~~~v~~~~i~R~~~Lg 388 (535)
T COG1574 317 LLTEEELEELVRAADERGLPVAVHAIGDGAVDAALDAFEKARKKNGLKGLRHRIEHAELVSPDQIERFAKLG 388 (535)
T ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEechHHHHHHHHHHHHHhhhcCCccCCceeeeeeecCHhHHHHHHhcC
Confidence 456788999999999999999999986 67778888776653211 2358899889999999988874
No 200
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=53.68 E-value=2.6e+02 Score=28.44 Aligned_cols=158 Identities=15% Similarity=0.083 Sum_probs=74.3
Q ss_pred HHHHHHHhcCCCEEEEECCCHHhHHHH-HHHHhcCC-CeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEe
Q psy4448 32 HVLNRAWNAGLEKIIVTGTNVEDSISS-LKLAQSDE-RLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGE 109 (487)
Q Consensus 32 ~vl~ra~~~GV~~ii~v~~~~~~~~~~-~~la~~~~-~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGE 109 (487)
++.+.+.+..=+.+-....++.+-+.+ .++.+... .-+..+.+||.......+ +..+..+-+.+.+. +-.+.| =
T Consensus 88 ~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~--~~~~~pi~~~a~~~-gvpv~i-h 163 (293)
T COG2159 88 DLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKLHPVAQGFYPD--DPRLYPIYEAAEEL-GVPVVI-H 163 (293)
T ss_pred HHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecccccCCCCC--ChHHHHHHHHHHHc-CCCEEE-E
Confidence 455555555544444445555543322 22222211 235677888876553321 12233343444442 233444 3
Q ss_pred eCCC---CCCCCCC-ChHHHHHHHHHHHHHhhhC-CCCEE-EEec---CchHHHHHHHHHhCCCCC-CcEEEE-ecCCCH
Q psy4448 110 FGLD---YDRVQYC-PVETQLKYFRKQLDLSVTH-KLPLF-LHCR---NAKSDFIEIMKEYAPKLP-RKGVIH-SFDGTP 178 (487)
Q Consensus 110 IGLD---~~~~~~~-~~e~Q~~vF~~qL~LA~el-~lPVi-IH~r---~a~~d~l~iLk~~~~~~~-~~~v~H-~FsG~~ 178 (487)
+|.. +.. ... ... ...-++|+++ +++|| .|+- --..+..++......-.- ..+... .|..
T Consensus 164 tG~~~~~~~~-~~~~~~p------~~~~~va~~fP~l~IVl~H~G~~~p~~~~a~~~a~~~~nvy~d~s~~~~~~~~~-- 234 (293)
T COG2159 164 TGAGPGGAGL-EKGHSDP------LYLDDVARKFPELKIVLGHMGEDYPWELEAIELAYAHPNVYLDTSGVRPKYFAP-- 234 (293)
T ss_pred eCCCCCCccc-ccCCCCc------hHHHHHHHHCCCCcEEEEecCCCCchhHHHHHHHHhCCCceeeeeccccccCCh--
Confidence 4443 211 110 000 1234678888 78765 7985 234456666654432110 011111 1221
Q ss_pred HHHHHHHcCccchhHhhhcCCCceeeccCCCCCC
Q psy4448 179 FQAVDSLKTKENLETVKSIPEDRLLLETDCPWCE 212 (487)
Q Consensus 179 ~~a~~~l~~~~g~e~v~~iP~driLlETD~P~l~ 212 (487)
.+++ .+..++.||||+.||.|+-.
T Consensus 235 ----~~~~------~~~~~~~dkilFGSD~P~~~ 258 (293)
T COG2159 235 ----PLLE------FLKELGPDKILFGSDYPAIH 258 (293)
T ss_pred ----HHHH------HHHhcccCeEEecCCCCCcC
Confidence 2222 23348999999999999974
No 201
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=53.56 E-value=1.1e+02 Score=32.72 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCCC
Q psy4448 374 IVQILEIVAAVRGVEREKLGPIIHQNTLRLFFPH 407 (487)
Q Consensus 374 l~~v~~~iA~ikg~~~~~va~~~~~N~~rlf~~~ 407 (487)
+..++..+..-.+++++++.+.++.|..++|++.
T Consensus 337 l~~~~~~~~~~~~l~~~~~~~~~t~~pA~~~g~~ 370 (443)
T TIGR03178 337 LDVMFDEAVQKRGLPLEDIARLMATNPAKRFGLA 370 (443)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhHHHHHHcCCC
Confidence 4444444444557999999999999999999984
No 202
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=53.47 E-value=58 Score=33.16 Aligned_cols=78 Identities=17% Similarity=0.129 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCCeEEEeecCCCCCCCcCCCchhhHH-HHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHH
Q psy4448 56 ISSLKLAQSDERLYSTVGCHPTRCSEFENDPEGYLQ-SLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLD 134 (487)
Q Consensus 56 ~~~~~la~~~~~v~~avGiHP~~~~~~~~~~~~~l~-~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~ 134 (487)
+.+++.|++.....+++-++= . +++. .|+..-+.+.|-++.+.+-+..|.- . -..+......
T Consensus 7 ~~ll~~Ake~~yAvpAfN~~n---------l-E~~~AileaA~e~~sPvIiq~S~g~~~y~g-g------~~~~~~~v~~ 69 (286)
T COG0191 7 KELLDKAKENGYAVPAFNINN---------L-ETLQAILEAAEEEKSPVIIQFSEGAAKYAG-G------ADSLAHMVKA 69 (286)
T ss_pred HHHHHHHHHcCCceeeeeecC---------H-HHHHHHHHHHHHhCCCEEEEecccHHHHhc-h------HHHHHHHHHH
Confidence 556677777777777777653 1 2232 3333333344667888888888753 1 3455666778
Q ss_pred HhhhCCCCEEEEecCc
Q psy4448 135 LSVTHKLPLFLHCRNA 150 (487)
Q Consensus 135 LA~el~lPViIH~r~a 150 (487)
+|.+++.||+||.-.+
T Consensus 70 ~a~~~~vPV~lHlDHg 85 (286)
T COG0191 70 LAEKYGVPVALHLDHG 85 (286)
T ss_pred HHHHCCCCEEEECCCC
Confidence 8999999999999543
No 203
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=53.25 E-value=1.7e+02 Score=29.98 Aligned_cols=104 Identities=12% Similarity=0.104 Sum_probs=61.2
Q ss_pred CHHHHHHHHHhcCCCEEEEECC-------CHHhHHHHHHHHhcC--CCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHh
Q psy4448 29 DIDHVLNRAWNAGLEKIIVTGT-------NVEDSISSLKLAQSD--ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKE 99 (487)
Q Consensus 29 d~~~vl~ra~~~GV~~ii~v~~-------~~~~~~~~~~la~~~--~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~ 99 (487)
.+...++...++||..+++.|+ +.++..++++.+.+. .++-.-+|+--.. .++.++. .+.+.+
T Consensus 30 ~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~-------t~~ai~~-a~~A~~ 101 (309)
T cd00952 30 ETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLN-------TRDTIAR-TRALLD 101 (309)
T ss_pred HHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCC-------HHHHHHH-HHHHHH
Confidence 4556888888999999998876 466777776654332 3344445553321 1233333 333433
Q ss_pred cCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhC-CCCEEEEec
Q psy4448 100 GGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTH-KLPLFLHCR 148 (487)
Q Consensus 100 ~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el-~lPViIH~r 148 (487)
-.+.+|- +--.||. . ..|..+++..-++|... ++||+|...
T Consensus 102 --~Gad~vl-v~~P~y~-~----~~~~~l~~yf~~va~a~~~lPv~iYn~ 143 (309)
T cd00952 102 --LGADGTM-LGRPMWL-P----LDVDTAVQFYRDVAEAVPEMAIAIYAN 143 (309)
T ss_pred --hCCCEEE-ECCCcCC-C----CCHHHHHHHHHHHHHhCCCCcEEEEcC
Confidence 1334442 3334443 1 13677788888888888 699998754
No 204
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=52.77 E-value=16 Score=34.88 Aligned_cols=114 Identities=16% Similarity=0.109 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHhhhCCCCEEEEeccchH---HHHHHHHHhCCCCC------------------CCcEEEEeeCCcccccc
Q psy4448 249 NIVYFRKQLDLSVTHKLPLFLHCRNAKS---DFIEIMKEYAPKLP------------------RKGVIHSFDGTPFQAVD 307 (487)
Q Consensus 249 Q~~~F~~ql~lA~~~~lPl~iH~r~a~~---~~l~il~~~~~~~~------------------~~gv~hsfsG~~~~~~~ 307 (487)
+.+.+++++++|+++++|+.+|+..... .+.++++....... ..|+++++++..
T Consensus 131 ~~~~~~~~~~~a~~~~~~i~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~~~~----- 205 (275)
T cd01292 131 SDESLRRVLEEARKLGLPVVIHAGELPDPTRALEDLVALLRLGGRVVIGHVSHLDPELLELLKEAGVSLEVCPLS----- 205 (275)
T ss_pred CcHHHHHHHHHHHHcCCeEEEeeCCcccCccCHHHHHHHHhcCCCEEEECCccCCHHHHHHHHHcCCeEEECCcc-----
Confidence 5678999999999999999999987764 34555543321000 134555555421
Q ss_pred cccc---hh----hHHHhhhCCCCceEeccCCCCCCCCCCCcchhhHhhhhhhhhhhccCCccCCCCCCccccHHHHHHH
Q psy4448 308 SLKT---KE----NLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEI 380 (487)
Q Consensus 308 ~~k~---~~----~~e~v~~iPldrlLlETD~P~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~P~~l~~v~~~ 380 (487)
.... .. ..++++.- .++++.||+|... .+.++...++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~g--~~~~lgTD~~~~~---------------------------------~~~~~~~~~~~ 250 (275)
T cd01292 206 NYLLGRDGEGAEALRRLLELG--IRVTLGTDGPPHP---------------------------------LGTDLLALLRL 250 (275)
T ss_pred cccccCCcCCcccHHHHHHCC--CcEEEecCCCCCC---------------------------------CCCCHHHHHHH
Confidence 1111 11 12333332 7999999998631 12334555565
Q ss_pred HHHhhC--CCHHHHHHHHHHHHHH
Q psy4448 381 VAAVRG--VEREKLGPIIHQNTLR 402 (487)
Q Consensus 381 iA~ikg--~~~~~va~~~~~N~~r 402 (487)
+....+ ++.+++.+.++.|..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~t~n~a~ 274 (275)
T cd01292 251 LLKVLRLGLSLEEALRLATINPAR 274 (275)
T ss_pred HHHHHhcCCCHHHHHHHHhccccC
Confidence 555544 6999999998888754
No 205
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=52.47 E-value=2.2e+02 Score=27.34 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecC------chHHHHHHHHHhCCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRN------AKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~------a~~d~l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
.--|+..|+++.+.++.++|.... ..+.+++++++++... .++++.||+ .+.++.+.+.
T Consensus 86 iptL~evl~~~~~~~~~l~ieiK~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~Sf~--~~~l~~~~~~ 150 (233)
T cd08582 86 VPTLEEYLAIVPKYGKKLFIEIKHPRRGPEAEEELLKLLKESGLLP-EQIVIISFD--AEALKRVREL 150 (233)
T ss_pred CCCHHHHHHHHHhcCceEEEEeCCCccCccHHHHHHHHHHHcCCCC-CCEEEEecC--HHHHHHHHHH
Confidence 345788888888888999998874 2456888888884322 378999986 4455555444
No 206
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=52.26 E-value=2.4e+02 Score=30.62 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHhcCCCEEEEEC----------CCHHhHHHHHHHHhcCCCeE
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTG----------TNVEDSISSLKLAQSDERLY 69 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~----------~~~~~~~~~~~la~~~~~v~ 69 (487)
.+.-.++....++|+..+=+.| .++..|+.+..+.+..|++.
T Consensus 26 ~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~ 77 (448)
T PRK12331 26 EEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTK 77 (448)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCE
Confidence 4555677888889997553321 35567888887776656543
No 207
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=52.05 E-value=48 Score=36.07 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCchHHH-----------HHHHHHhCCCCCCcEEEEecCCCH---------HHHHHHH
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNAKSDF-----------IEIMKEYAPKLPRKGVIHSFDGTP---------FQAVDSL 185 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a~~d~-----------l~iLk~~~~~~~~~~v~H~FsG~~---------~~a~~~l 185 (487)
.+.+++.+++|.++++||.+|+-....++ ++.+.+.+...+.-.+.||+.-+. +.++.+.
T Consensus 220 ~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~~g~l~~r~~l~H~~~l~~~~~~~~~~~~~~~~la 299 (488)
T PRK06151 220 VDLLRRTAAAARELGCPVRLHCAQGVLEVETVRRLHGTTPLEWLADVGLLGPRLLIPHATYISGSPRLNYSGGDDLALLA 299 (488)
T ss_pred HHHHHHHHHHHHHCCCcEEEEECCchHHHHHHHHHcCCCHHHHHHHcCCCCCCcEEEEEEEcCCccccccCCHHHHHHHH
Confidence 46688999999999999999997554433 333444332122235779998887 8888887
Q ss_pred cC
Q psy4448 186 KT 187 (487)
Q Consensus 186 ~~ 187 (487)
+.
T Consensus 300 ~~ 301 (488)
T PRK06151 300 EH 301 (488)
T ss_pred hc
Confidence 77
No 208
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=51.54 E-value=12 Score=32.43 Aligned_cols=41 Identities=24% Similarity=0.553 Sum_probs=20.7
Q ss_pred eeCCCCCCCCC---CChHHHHHHHHHHHHHhhhCCCCEEEEecCchH
Q psy4448 109 EFGLDYDRVQY---CPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKS 152 (487)
Q Consensus 109 EIGLD~~~~~~---~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~ 152 (487)
+.||.|.++.- .....+.+.|.+.|+ +...||.+|||....
T Consensus 55 ~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~---~~~~Pvl~hC~sG~R 98 (110)
T PF04273_consen 55 ALGLQYVHIPVDGGAITEEDVEAFADALE---SLPKPVLAHCRSGTR 98 (110)
T ss_dssp HCT-EEEE----TTT--HHHHHHHHHHHH---TTTTSEEEE-SCSHH
T ss_pred HcCCeEEEeecCCCCCCHHHHHHHHHHHH---hCCCCEEEECCCChh
Confidence 35666644211 122445555554444 456799999998654
No 209
>PRK06801 hypothetical protein; Provisional
Probab=51.47 E-value=1.6e+02 Score=30.10 Aligned_cols=62 Identities=15% Similarity=0.183 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCc------hHHHHHHHHHhCCCCCCcEEEEecCC-CHHHHHHHHcC
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNA------KSDFIEIMKEYAPKLPRKGVIHSFDG-TPFQAVDSLKT 187 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a------~~d~l~iLk~~~~~~~~~~v~H~FsG-~~~~a~~~l~~ 187 (487)
.+..+..++.|.+.+.||||-.-.. .+.+..+++........++.+|.=-| +.+.++++++.
T Consensus 28 ~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~ 96 (286)
T PRK06801 28 SHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRL 96 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHh
Confidence 3457778888888888888765332 23344444433211223577776444 67888888887
No 210
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=51.02 E-value=2.2e+02 Score=31.91 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=46.4
Q ss_pred HHHhhhC-CCCceEeccCCCCCCCCCCCcchhhHhhhh-hhhhhhccCCccCCCCCCccccHHHHHHH---HHHh-hCCC
Q psy4448 315 LETVKSI-PEDRLLLETDCPWCEVKPSHAGFAYIRTQH-EKVKKEQWKPDKMVKSRNEPANIVQILEI---VAAV-RGVE 388 (487)
Q Consensus 315 ~e~v~~i-PldrlLlETD~P~~~~~p~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~n~P~~l~~v~~~---iA~i-kg~~ 388 (487)
+|+.=-+ ...|+++=||.|-..|- .+|..|-++| .+..|+.+.. . +..-+.. ++.+ ++++
T Consensus 366 lel~Ll~~dp~~~~~ttDhPnggpf---~~YP~ii~~lm~~~~r~~~~~-----~------~~~~~~~~~~l~~~~Re~s 431 (556)
T TIGR03121 366 LELFLLIKDPWRVFLTTDHPNGGPF---TRYPRIIALLMSRKYREDMLS-----T------VHPWAAARSTLGGIDREYS 431 (556)
T ss_pred hHHHHhcCCcceeEEeccCCCCCcc---cchHHHHHHHcCHHHHHHHHH-----h------cCHHHHhhcccccccCCCC
Confidence 4553333 67899999999975432 3454444432 1122322110 0 1111111 1233 5688
Q ss_pred HHHHHHHHHHHHHHhcCCCC
Q psy4448 389 REKLGPIIHQNTLRLFFPHE 408 (487)
Q Consensus 389 ~~~va~~~~~N~~rlf~~~~ 408 (487)
++++++.++.|.-++|++..
T Consensus 432 L~EI~~mtTanPAkaLGL~d 451 (556)
T TIGR03121 432 LYEIAIMTRAGPAKLLGLTD 451 (556)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999864
No 211
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=51.02 E-value=1.9e+02 Score=26.20 Aligned_cols=30 Identities=10% Similarity=0.161 Sum_probs=24.7
Q ss_pred HHHHHHhhhCCCCEEEEeccchHHHHHHHH
Q psy4448 254 RKQLDLSVTHKLPLFLHCRNAKSDFIEIMK 283 (487)
Q Consensus 254 ~~ql~lA~~~~lPl~iH~r~a~~~~l~il~ 283 (487)
...++.+++.|+++.+.+++..+++-.+++
T Consensus 150 ~~~i~~~~~~g~~v~~wtvn~~~~~~~~~~ 179 (189)
T cd08556 150 PELVRAAHAAGLKVYVWTVNDPEDARRLLA 179 (189)
T ss_pred HHHHHHHHHcCCEEEEEcCCCHHHHHHHHH
Confidence 466888999999999999998777766655
No 212
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=50.64 E-value=2.8e+02 Score=27.98 Aligned_cols=137 Identities=9% Similarity=0.036 Sum_probs=76.9
Q ss_pred CHHHHHHHHHhcC-CCEEEEECC-------CHHhHHHHHHHHhcC--CC--eEEEeecCCCCCCCcCCCchhhHHHHHHH
Q psy4448 29 DIDHVLNRAWNAG-LEKIIVTGT-------NVEDSISSLKLAQSD--ER--LYSTVGCHPTRCSEFENDPEGYLQSLDKI 96 (487)
Q Consensus 29 d~~~vl~ra~~~G-V~~ii~v~~-------~~~~~~~~~~la~~~--~~--v~~avGiHP~~~~~~~~~~~~~l~~L~~l 96 (487)
.+...++...+.| +..+++.|+ +.++..++++.+.+. .+ ++..+|-.. .++.++.. +.
T Consensus 22 ~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~---------t~~~i~la-~~ 91 (290)
T TIGR00683 22 GLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVN---------LKEAVELG-KY 91 (290)
T ss_pred HHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCC---------HHHHHHHH-HH
Confidence 3455677778899 999888876 567777777654332 23 455555221 12333333 33
Q ss_pred HHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhC-CCCEEEEecC------chHHHHHHHHHhCCCCCCcE
Q psy4448 97 IKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTH-KLPLFLHCRN------AKSDFIEIMKEYAPKLPRKG 169 (487)
Q Consensus 97 l~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el-~lPViIH~r~------a~~d~l~iLk~~~~~~~~~~ 169 (487)
+.+. .+.+| -+...||. . ..|.+++...-++|... ++||+|-.-- -..+++.-|.+.+. -.
T Consensus 92 a~~~--Gad~v-~v~~P~y~-~----~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~~pn----v~ 159 (290)
T TIGR00683 92 ATEL--GYDCL-SAVTPFYY-K----FSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYKNPK----VL 159 (290)
T ss_pred HHHh--CCCEE-EEeCCcCC-C----CCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHhcCCC----EE
Confidence 4431 33333 23445544 1 13678888888888777 7999976422 12344444444321 23
Q ss_pred EEEecCCCHHHHHHHHcC
Q psy4448 170 VIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 170 v~H~FsG~~~~a~~~l~~ 187 (487)
-+..-+|+.....+++..
T Consensus 160 giK~s~~d~~~~~~~~~~ 177 (290)
T TIGR00683 160 GVKFTAGDFYLLERLKKA 177 (290)
T ss_pred EEEeCCCCHHHHHHHHHh
Confidence 444467887777666543
No 213
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=50.61 E-value=50 Score=34.67 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=28.6
Q ss_pred HHHHHHHhhhCCCCEEEEeccchHHHHHHHHHhCC
Q psy4448 253 FRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAP 287 (487)
Q Consensus 253 F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~~~ 287 (487)
....++||.+++.||++|+-+-.+++-.+-.++.+
T Consensus 194 ~~e~~klav~y~vplvl~a~~dl~~lk~la~~~~~ 228 (467)
T COG1456 194 WKEFAKLAVEYKVPLVLSAFNDLDDLKNLAVTYAQ 228 (467)
T ss_pred HHHHHHHHhhcCCcEEEeccCCHHHHHHHHHHHHH
Confidence 45567889999999999999888888887776643
No 214
>COG1904 UxaC Glucuronate isomerase [Carbohydrate transport and metabolism]
Probab=50.60 E-value=14 Score=39.52 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=34.7
Q ss_pred CcEEEecccCCCcccccccccCCCCCCCCHHH--------HHHHHHhcCCCEEEEECCCHHhHHHHHHHHhcC
Q psy4448 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDH--------VLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSD 65 (487)
Q Consensus 1 m~~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~--------vl~ra~~~GV~~ii~v~~~~~~~~~~~~la~~~ 65 (487)
|.|||-|||+....+. -+ ...+|+-+ +..-++.+||..-.+.| +-++-++-...++.+
T Consensus 25 lPIidpH~Hl~P~~i~---en---~~F~d~t~l~l~~DHY~wRmmrs~GV~e~~itg-d~sdrEkw~afa~~~ 90 (463)
T COG1904 25 LPIIDPHCHLEPQEIA---EN---EAFPDPTSLWLKGDHYKWRMMRSNGVAERLITG-DTSDREKWRAFAKTV 90 (463)
T ss_pred CCeeCCcCCCCHHHHh---hc---CCCCCHHHHhhcccHHHHHHHHHcCCchhhcCC-CCChHHHHHHHHHhh
Confidence 7899999999975442 11 11234433 33557888998766665 544444445555544
No 215
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=49.83 E-value=2.9e+02 Score=27.93 Aligned_cols=139 Identities=12% Similarity=0.099 Sum_probs=77.1
Q ss_pred CHHHHHHHHHhcCCCEEEEECC-------CHHhHHHHHHHHhc-C-CCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHh
Q psy4448 29 DIDHVLNRAWNAGLEKIIVTGT-------NVEDSISSLKLAQS-D-ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKE 99 (487)
Q Consensus 29 d~~~vl~ra~~~GV~~ii~v~~-------~~~~~~~~~~la~~-~-~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~ 99 (487)
.+...++...+.||..+++.|+ +.++..++++.+.+ . .++-..+|+=... .++.++..+ .+.+
T Consensus 22 ~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~-------t~~ai~~a~-~A~~ 93 (294)
T TIGR02313 22 ALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALN-------HDETLELTK-FAEE 93 (294)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcch-------HHHHHHHHH-HHHH
Confidence 3456778888899999998877 35555566554322 2 3332333432111 123333333 3333
Q ss_pred cCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhC-CCCEEEEecC------chHHHHHHH-HHhCCCCCCcEEE
Q psy4448 100 GGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTH-KLPLFLHCRN------AKSDFIEIM-KEYAPKLPRKGVI 171 (487)
Q Consensus 100 ~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el-~lPViIH~r~------a~~d~l~iL-k~~~~~~~~~~v~ 171 (487)
-.+.+| -+...||. . ..|..+++..-++|... ++||+|..-- -..+++.-| ++.+. ..+|=
T Consensus 94 --~Gad~v-~v~pP~y~-~----~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pn---v~giK 162 (294)
T TIGR02313 94 --AGADAA-MVIVPYYN-K----PNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPN---IVGAK 162 (294)
T ss_pred --cCCCEE-EEcCccCC-C----CCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCC---EEEEE
Confidence 133444 34555553 1 23678888888888888 8999988532 123455444 34432 23444
Q ss_pred EecCCCHHHHHHHHcC
Q psy4448 172 HSFDGTPFQAVDSLKT 187 (487)
Q Consensus 172 H~FsG~~~~a~~~l~~ 187 (487)
. -+|+.....+++..
T Consensus 163 ~-ss~d~~~~~~~~~~ 177 (294)
T TIGR02313 163 E-SNKDFEHLNHLFLE 177 (294)
T ss_pred e-CCCCHHHHHHHHHh
Confidence 4 46787777666543
No 216
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=49.64 E-value=2.9e+02 Score=27.83 Aligned_cols=138 Identities=10% Similarity=0.048 Sum_probs=76.2
Q ss_pred CHHHHHHHHHh-cCCCEEEEECC-------CHHhHHHHHHHHhcC--CCeEEEeecCCCCCCCcCCCchhhHHHHHHHHH
Q psy4448 29 DIDHVLNRAWN-AGLEKIIVTGT-------NVEDSISSLKLAQSD--ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIK 98 (487)
Q Consensus 29 d~~~vl~ra~~-~GV~~ii~v~~-------~~~~~~~~~~la~~~--~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~ 98 (487)
.+...++...+ .||..+++.|+ +.++..++++.+.+. .++-..+|+=-.. .++.++. .+.+.
T Consensus 25 ~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~-------t~~ai~~-a~~a~ 96 (293)
T PRK04147 25 GLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVN-------TAEAQEL-AKYAT 96 (293)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCC-------HHHHHHH-HHHHH
Confidence 45567888888 99999998876 456666666654332 3333334441111 2233333 33333
Q ss_pred hcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc------hHHHHHHHHHhCCCCCCcEEEE
Q psy4448 99 EGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA------KSDFIEIMKEYAPKLPRKGVIH 172 (487)
Q Consensus 99 ~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a------~~d~l~iLk~~~~~~~~~~v~H 172 (487)
+ -.+.+| -+-..||. . ..|..+++..-++|...++||++..--. .-+++.-|.+.++ -.-+.
T Consensus 97 ~--~Gad~v-~v~~P~y~-~----~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pn----vvgiK 164 (293)
T PRK04147 97 E--LGYDAI-SAVTPFYY-P----FSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFTLPK----VIGVK 164 (293)
T ss_pred H--cCCCEE-EEeCCcCC-C----CCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhcCCC----EEEEE
Confidence 3 123333 23345543 2 2367888888888888999999985321 2244444444322 22334
Q ss_pred ecCCCHHHHHHHHc
Q psy4448 173 SFDGTPFQAVDSLK 186 (487)
Q Consensus 173 ~FsG~~~~a~~~l~ 186 (487)
.-+|+.....++++
T Consensus 165 ~s~~d~~~~~~~~~ 178 (293)
T PRK04147 165 QTAGDLYQLERIRK 178 (293)
T ss_pred eCCCCHHHHHHHHH
Confidence 44677766655543
No 217
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=49.62 E-value=2.6e+02 Score=27.29 Aligned_cols=133 Identities=11% Similarity=0.087 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHhcCCCEEEEECCCHHhHHHHHHHHhcCCCeEEEeecCCCC--CCC----cC-CCchhhHHHHHHHH---
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTR--CSE----FE-NDPEGYLQSLDKII--- 97 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~la~~~~~v~~avGiHP~~--~~~----~~-~~~~~~l~~L~~ll--- 97 (487)
-++++.++++.+.|.+.+=+.+....+.+.+.++.+++.--.++.++.+.. ... .. ...+...+.+++.+
T Consensus 15 ~~l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 94 (258)
T PRK09997 15 YDFLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYA 94 (258)
T ss_pred CCHHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHHHHHHH
Confidence 478999999999999866544433345666666666665433332221111 000 00 00112223333333
Q ss_pred HhcCCCEEEEEeeCCCCCCCCCCC---hHHHHHHHHHHHHHhhhCCCCEEEEec----------CchHHHHHHHHHhCC
Q psy4448 98 KEGGKKVVAFGEFGLDYDRVQYCP---VETQLKYFRKQLDLSVTHKLPLFLHCR----------NAKSDFIEIMKEYAP 163 (487)
Q Consensus 98 ~~~~~~vvaIGEIGLD~~~~~~~~---~e~Q~~vF~~qL~LA~el~lPViIH~r----------~a~~d~l~iLk~~~~ 163 (487)
..-.-+.+.+ -.|-.. . +... ++.=.+.+.+..++|++.|+.+.+|.. ...+++++++++...
T Consensus 95 ~~lga~~i~~-~~g~~~-~-~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~~~~~~~~~~~ll~~v~~ 170 (258)
T PRK09997 95 RALGNKKINC-LVGKTP-A-GFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPGFHLTGTRQALKLIDDVGC 170 (258)
T ss_pred HHhCCCEEEE-CCCCCC-C-CCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCCCCccCCHHHHHHHHHHhCC
Confidence 2211122221 223110 0 1111 122235567778888899999999852 234578888887653
No 218
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=49.23 E-value=1.3e+02 Score=32.25 Aligned_cols=104 Identities=14% Similarity=0.229 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCCCEEEEE--CCCHHhHHHHHHHHhcCCC---eEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCE
Q psy4448 30 IDHVLNRAWNAGLEKIIVT--GTNVEDSISSLKLAQSDER---LYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKV 104 (487)
Q Consensus 30 ~~~vl~ra~~~GV~~ii~v--~~~~~~~~~~~~la~~~~~---v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~v 104 (487)
.+..++++.++|++-+=+. =.|+...+.+++.+++++. ...+..+-|- +.. +.+++..++++
T Consensus 100 Ve~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPv--Ht~----e~yv~~akel~------- 166 (472)
T COG5016 100 VEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPV--HTL----EYYVELAKELL------- 166 (472)
T ss_pred HHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCc--ccH----HHHHHHHHHHH-------
Confidence 5567788889998743222 3478888888998888864 3445566663 222 34455555544
Q ss_pred EEEEeeCCCCCC-CCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc
Q psy4448 105 VAFGEFGLDYDR-VQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA 150 (487)
Q Consensus 105 vaIGEIGLD~~~-~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a 150 (487)
|+|.|.-- .+.+..-.=.++++-.=.+=+++++||.+||-..
T Consensus 167 ----~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lHtH~T 209 (472)
T COG5016 167 ----EMGVDSICIKDMAGLLTPYEAYELVKAIKKELPVPVELHTHAT 209 (472)
T ss_pred ----HcCCCEEEeecccccCChHHHHHHHHHHHHhcCCeeEEecccc
Confidence 34445311 0222222234556666666677899999999763
No 219
>PLN02591 tryptophan synthase
Probab=49.05 E-value=2.8e+02 Score=27.59 Aligned_cols=74 Identities=19% Similarity=0.233 Sum_probs=49.5
Q ss_pred CHHHHHHHHHhcCCCEEEEECCCHHhHHHHHHHHhcCCC-eEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEE
Q psy4448 29 DIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDER-LYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAF 107 (487)
Q Consensus 29 d~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~la~~~~~-v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaI 107 (487)
..+..++++.++|++.++++-..+++.....+.++++.- ....+. |.. .+ +.++.+.....+-+-.|
T Consensus 94 G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~--Ptt-------~~---~ri~~ia~~~~gFIY~V 161 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTT--PTT-------PT---ERMKAIAEASEGFVYLV 161 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeC--CCC-------CH---HHHHHHHHhCCCcEEEe
Confidence 678889999999999999999989999999998888752 333332 321 12 23444444332445566
Q ss_pred EeeCCCC
Q psy4448 108 GEFGLDY 114 (487)
Q Consensus 108 GEIGLD~ 114 (487)
|=.|..-
T Consensus 162 s~~GvTG 168 (250)
T PLN02591 162 SSTGVTG 168 (250)
T ss_pred eCCCCcC
Confidence 6666654
No 220
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=48.98 E-value=42 Score=39.58 Aligned_cols=64 Identities=16% Similarity=0.333 Sum_probs=42.2
Q ss_pred CcEEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCC-HHhHHHHHHHHhcCCCeEEEeec
Q psy4448 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTN-VEDSISSLKLAQSDERLYSTVGC 74 (487)
Q Consensus 1 m~~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~-~~~~~~~~~la~~~~~v~~avGi 74 (487)
|+++|.|+|.... | -.| ...+++++++|++.|+..+.++-.+ ........+.+++. ++.+-+|+
T Consensus 1 m~Fv~LH~HS~yS-l---Ldg-----~~~~~elv~~A~~~G~~aiAiTDh~~~~g~~~f~~~~~~~-gik~I~G~ 65 (874)
T PRK09532 1 MSFVGLHIHSDYS-L---LDG-----ASQLPALVDRAIELGMPAIALTDHGVMYGAIELLKVCRNK-GIKPIIGN 65 (874)
T ss_pred CCccccccCCcCc-h---hhc-----cCCHHHHHHHHHHCCCCEEEEecCCChhhHHHHHHHHHHc-CCeEEEEE
Confidence 8899999998753 2 123 5789999999999999877665322 33344445555553 34444444
No 221
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=48.94 E-value=2.3e+02 Score=28.57 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=35.2
Q ss_pred CEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHh
Q psy4448 103 KVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEY 161 (487)
Q Consensus 103 ~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~ 161 (487)
.++..|-.|==++ -+.+..+++++..++.+. -+.||+.|.-....+++++.+..
T Consensus 37 gi~v~GstGE~~~----Ls~eEr~~l~~~~~~~~~-~~~pvi~gv~~~t~~~i~~a~~a 90 (289)
T cd00951 37 ALFAAGGTGEFFS----LTPDEYAQVVRAAVEETA-GRVPVLAGAGYGTATAIAYAQAA 90 (289)
T ss_pred EEEECcCCcCccc----CCHHHHHHHHHHHHHHhC-CCCCEEEecCCCHHHHHHHHHHH
Confidence 3444455554322 245778888888888765 46899988866666777766554
No 222
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=48.91 E-value=1.5e+02 Score=30.36 Aligned_cols=96 Identities=13% Similarity=0.184 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCc-------hHHHHHHHHHhCCCCCCcEEEEecCC-CHHHHHHHHcCccchhHhhhc
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNA-------KSDFIEIMKEYAPKLPRKGVIHSFDG-TPFQAVDSLKTKENLETVKSI 197 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a-------~~d~l~iLk~~~~~~~~~~v~H~FsG-~~~~a~~~l~~~~g~e~v~~i 197 (487)
.+..+..|+.|.+.+-||||-.-.. ...+..+++......+.++++|.=-| +.+...+.++. |+.
T Consensus 28 lE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg~~~~~~~~ai~~--GFs----- 100 (286)
T COG0191 28 LETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDHGASFEDCKQAIRA--GFS----- 100 (286)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHhc--CCc-----
Confidence 4567889999999999999987552 23344444333222224799998877 88889888887 541
Q ss_pred CCCceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccccCCC-ChhhhHHHHHHHHHHhhhCCCCE
Q psy4448 198 PEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSR-NEPANIVYFRKQLDLSVTHKLPL 267 (487)
Q Consensus 198 P~driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-n~P~Q~~~F~~ql~lA~~~~lPl 267 (487)
-.++||+. +..-++..-++-++.|...|.+|
T Consensus 101 ---------------------------------------SvMiDgS~~~~eENi~~tkevv~~ah~~gvsV 132 (286)
T COG0191 101 ---------------------------------------SVMIDGSHLPFEENIAITKEVVEFAHAYGVSV 132 (286)
T ss_pred ---------------------------------------eEEecCCcCCHHHHHHHHHHHHHHHHHcCCcE
Confidence 01223322 34556777778888888888776
No 223
>PRK09228 guanine deaminase; Provisional
Probab=48.78 E-value=3.1e+02 Score=29.31 Aligned_cols=62 Identities=18% Similarity=0.128 Sum_probs=39.5
Q ss_pred HHHhhhCC----CCEEEEecCchHHHHHHHHHhCCCCCCcEEEEecCCCHHH------HHHHHcCccchhHhhhcCCCce
Q psy4448 133 LDLSVTHK----LPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQ------AVDSLKTKENLETVKSIPEDRL 202 (487)
Q Consensus 133 L~LA~el~----lPViIH~r~a~~d~l~iLk~~~~~~~~~~v~H~FsG~~~~------a~~~l~~~~g~e~v~~iP~dri 202 (487)
++...+++ ..++.|+....++-+++|++.+. .+.||-+.+... +.++++. | -++
T Consensus 253 ~~~l~~~G~l~~~~~~~H~~~l~~~~~~~la~~g~-----~v~~~P~sn~~lg~g~~~~~~~~~~--G---------v~v 316 (433)
T PRK09228 253 LDVYERYGLLGPRAVFAHCIHLEDRERRRLAETGA-----AIAFCPTSNLFLGSGLFDLKRADAA--G---------VRV 316 (433)
T ss_pred HHHHHHcCCCCCCeEEEeccCCCHHHHHHHHHcCC-----eEEECCccHHhhcCCCcCHHHHHHC--C---------CeE
Confidence 44445544 34668999998988999988743 678886654321 1222222 2 378
Q ss_pred eeccCCCC
Q psy4448 203 LLETDCPW 210 (487)
Q Consensus 203 LlETD~P~ 210 (487)
.+.||++-
T Consensus 317 ~lGtD~~~ 324 (433)
T PRK09228 317 GLGTDVGG 324 (433)
T ss_pred EEecCCCC
Confidence 89999863
No 224
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=48.78 E-value=53 Score=33.29 Aligned_cols=16 Identities=13% Similarity=0.337 Sum_probs=11.4
Q ss_pred HHHHHHhhhCCCCEEE
Q psy4448 254 RKQLDLSVTHKLPLFL 269 (487)
Q Consensus 254 ~~ql~lA~~~~lPl~i 269 (487)
+.-|.+|+++|.|+++
T Consensus 193 ~d~L~ic~~~giP~Vf 208 (275)
T PF03851_consen 193 EDVLPICEKLGIPMVF 208 (275)
T ss_dssp HHHHHHHHHHT--EEE
T ss_pred HHHHHHHHHhCCCEEE
Confidence 3468999999999984
No 225
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=48.32 E-value=3.1e+02 Score=27.89 Aligned_cols=117 Identities=12% Similarity=0.183 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHhcCCCEEEEECCC------HHhHHHHHHHHhcCC-CeEEEeecCCCCCCCc-C-CCchhhHHHHHHHHH
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTGTN------VEDSISSLKLAQSDE-RLYSTVGCHPTRCSEF-E-NDPEGYLQSLDKIIK 98 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~~~------~~~~~~~~~la~~~~-~v~~avGiHP~~~~~~-~-~~~~~~l~~L~~ll~ 98 (487)
.+++.+ .+|-++|.+.++.=|.. .+..+++.+++..+. .|=.=+|-=+..-... . .......++..++++
T Consensus 88 ~~~e~i-~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~ 166 (285)
T PRK07709 88 SSFEKC-KEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVE 166 (285)
T ss_pred CCHHHH-HHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHH
Confidence 465544 57888899876654543 233334555665543 1222233221110000 0 000123455666666
Q ss_pred hcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc
Q psy4448 99 EGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA 150 (487)
Q Consensus 99 ~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a 150 (487)
...-...|| -||==+.... .....+.+.++. +..+.+.|++||--..
T Consensus 167 ~TgvD~LAv-aiGt~HG~Y~-~~p~L~~~~L~~---I~~~~~iPLVLHGgSG 213 (285)
T PRK07709 167 ATGIDCLAP-ALGSVHGPYK-GEPNLGFAEMEQ---VRDFTGVPLVLHGGTG 213 (285)
T ss_pred HhCCCEEEE-eecccccCcC-CCCccCHHHHHH---HHHHHCCCEEEeCCCC
Confidence 532334555 2443332101 111233333333 4555677777776543
No 226
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=48.22 E-value=2.8e+02 Score=27.33 Aligned_cols=126 Identities=11% Similarity=0.062 Sum_probs=0.0
Q ss_pred hHHHHHHHHhcCCCeEEEeecCCCCC----CCcCCCchhhHHHHHHHHHhcCCCEEEEEeeC---CCCCCCCCCChHHHH
Q psy4448 54 DSISSLKLAQSDERLYSTVGCHPTRC----SEFENDPEGYLQSLDKIIKEGGKKVVAFGEFG---LDYDRVQYCPVETQL 126 (487)
Q Consensus 54 ~~~~~~~la~~~~~v~~avGiHP~~~----~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIG---LD~~~~~~~~~e~Q~ 126 (487)
.|.+.++++++.+.=..=+++.+... ..+. ....+.+.+.+++..=++++++--+ ......+...++.-.
T Consensus 17 ~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~ 93 (279)
T TIGR00542 17 CWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWS---REQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGL 93 (279)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCccchhhccCCC---HHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHH
Q ss_pred HHHHHHHHHhhhCCCCEE-EEec----------------CchHHHHHHHHHhCCCCCCcEEEE----ecCCCHHHHHHHH
Q psy4448 127 KYFRKQLDLSVTHKLPLF-LHCR----------------NAKSDFIEIMKEYAPKLPRKGVIH----SFDGTPFQAVDSL 185 (487)
Q Consensus 127 ~vF~~qL~LA~el~lPVi-IH~r----------------~a~~d~l~iLk~~~~~~~~~~v~H----~FsG~~~~a~~~l 185 (487)
+.+++.+++|.++|.+++ ++.. +...++.++.++++. ...+| .|-.+...+.+++
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv----~l~lE~~~~~~~~t~~~~~~li 169 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQV----TLAVEIMDTPFMSSISKWLKWD 169 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCC----EEEEeeCCCchhcCHHHHHHHH
Q ss_pred c
Q psy4448 186 K 186 (487)
Q Consensus 186 ~ 186 (487)
+
T Consensus 170 ~ 170 (279)
T TIGR00542 170 H 170 (279)
T ss_pred H
No 227
>PRK08185 hypothetical protein; Provisional
Probab=48.08 E-value=1.3e+02 Score=30.58 Aligned_cols=96 Identities=15% Similarity=0.263 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCc-----hHHHHHHHHHhCCCCCCcEEEEecCC-CHHHHHHHHcCccchhHhhhcCC
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNA-----KSDFIEIMKEYAPKLPRKGVIHSFDG-TPFQAVDSLKTKENLETVKSIPE 199 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a-----~~d~l~iLk~~~~~~~~~~v~H~FsG-~~~~a~~~l~~~~g~e~v~~iP~ 199 (487)
.+..+..++.|.+.+.||||-.-.. ..++..+++........++++|.=-| +.+.++++++. |+.
T Consensus 23 ~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i~~ai~~--Gf~------- 93 (283)
T PRK08185 23 SCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVPFVIHLDHGATIEDVMRAIRC--GFT------- 93 (283)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHc--CCC-------
Confidence 3456677777888888887755331 12344444433211123567766444 67788888877 431
Q ss_pred Cceee-ccCCCCCCCCCCCcccchhcccchhhhhhccCCccccCCCChhhhHHHHHHHHHHhhhCCCCE
Q psy4448 200 DRLLL-ETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVYFRKQLDLSVTHKLPL 267 (487)
Q Consensus 200 driLl-ETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~P~Q~~~F~~ql~lA~~~~lPl 267 (487)
-+++ +|+.| ...+++..++-+++|..+|.+|
T Consensus 94 -SVM~D~S~l~------------------------------------~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 94 -SVMIDGSLLP------------------------------------YEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred -EEEEeCCCCC------------------------------------HHHHHHHHHHHHHHHHHcCCeE
Confidence 1111 23333 3456777888899999999998
No 228
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=47.84 E-value=1.9e+02 Score=30.00 Aligned_cols=34 Identities=12% Similarity=0.048 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCCC
Q psy4448 374 IVQILEIVAAVRGVEREKLGPIIHQNTLRLFFPH 407 (487)
Q Consensus 374 l~~v~~~iA~ikg~~~~~va~~~~~N~~rlf~~~ 407 (487)
+...+-.++...+++++++.+.++.|.-+++++.
T Consensus 260 ll~~~~~la~~~gl~l~eAl~~aT~nPA~~lGl~ 293 (325)
T cd01306 260 LLHAAFRLADLGGWSLPEAVALVSANPARAVGLT 293 (325)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHhHHHHHHcCCC
Confidence 3334445566678999999999999999999986
No 229
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=47.79 E-value=3e+02 Score=28.22 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCCC-CCcEEEEecCCCHHHHHHHHcCccchhHhhhcCCCceeeccCCCCCCCCCCCcc
Q psy4448 153 DFIEIMKEYAPKL-PRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAG 219 (487)
Q Consensus 153 d~l~iLk~~~~~~-~~~~v~H~FsG~~~~a~~~l~~~~g~e~v~~iP~driLlETD~P~l~~~~~~~~ 219 (487)
++++.+++..+.. -..++|=+|+.+.++..+.++. ++.++.|.+.+ .+|+.|.+.|.-
T Consensus 195 e~l~~ak~~~pgi~~~TgiIVGlGETeee~~etl~~------Lrelg~d~v~i---gqYl~p~~~~~~ 253 (302)
T TIGR00510 195 KLLERAKEYLPNLPTKSGIMVGLGETNEEIKQTLKD------LRDHGVTMVTL---GQYLRPSRRHLP 253 (302)
T ss_pred HHHHHHHHhCCCCeecceEEEECCCCHHHHHHHHHH------HHhcCCCEEEe---ecccCCCCCCCc
Confidence 3444445542111 1357888898888887776554 67777777666 578876444443
No 230
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=47.03 E-value=1.5e+02 Score=30.19 Aligned_cols=61 Identities=7% Similarity=0.078 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhhCCCCEEEEecCc------hHHHHHHHHHhCCCCCCcEEEEecCC-CHHHHHHHHcC
Q psy4448 127 KYFRKQLDLSVTHKLPLFLHCRNA------KSDFIEIMKEYAPKLPRKGVIHSFDG-TPFQAVDSLKT 187 (487)
Q Consensus 127 ~vF~~qL~LA~el~lPViIH~r~a------~~d~l~iLk~~~~~~~~~~v~H~FsG-~~~~a~~~l~~ 187 (487)
+..+..++.|.+.+-||||-.-.. .+.+..+++........++++|-=-| +.+..+++++.
T Consensus 29 e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~i~~Ai~~ 96 (284)
T PRK09195 29 ETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDHHEKFDDIAQKVRS 96 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHc
Confidence 567777888888888888765331 22333333332211113567765333 67888888887
No 231
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=46.48 E-value=2.8e+02 Score=27.67 Aligned_cols=112 Identities=18% Similarity=0.168 Sum_probs=66.1
Q ss_pred eEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHH-------------HHHHHHHH
Q psy4448 68 LYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQL-------------KYFRKQLD 134 (487)
Q Consensus 68 v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~-------------~vF~~qL~ 134 (487)
.|.++|. |.. +..++.+..+.+. .+-+| |+|+.|+-.-....-.|. .+|+..-+
T Consensus 16 ~yi~aG~-P~~--------~~~~~~~~~l~~~---Gad~i-ElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~ 82 (258)
T PRK13111 16 PYITAGD-PDL--------ETSLEIIKALVEA---GADII-ELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVRE 82 (258)
T ss_pred EEEeCCC-CCH--------HHHHHHHHHHHHC---CCCEE-EECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4777774 632 3445566666554 57788 999999753223334455 44555555
Q ss_pred Hh-hhCCCCEEEEecC------chHHHHHHHHHhCCCCCCcEEEEecCCCHHHHHHHHcCccchhHhhhcCCCcee
Q psy4448 135 LS-VTHKLPLFLHCRN------AKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPEDRLL 203 (487)
Q Consensus 135 LA-~el~lPViIH~r~------a~~d~l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~~~g~e~v~~iP~driL 203 (487)
+. +..+.|+++=+-- ..+++++.+++.+.. ..++ =.=+.++++.+.+. .+...++-|+
T Consensus 83 ~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvd---Gvii--pDLp~ee~~~~~~~------~~~~gl~~I~ 147 (258)
T PRK13111 83 IREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVD---GLII--PDLPPEEAEELRAA------AKKHGLDLIF 147 (258)
T ss_pred HHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCc---EEEE--CCCCHHHHHHHHHH------HHHcCCcEEE
Confidence 55 4467897765522 567888888887652 2344 24456666665543 3444555554
No 232
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=45.46 E-value=2.5e+02 Score=28.02 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHhhhCCCCEEEEecc
Q psy4448 247 PANIVYFRKQLDLSVTHKLPLFLHCRN 273 (487)
Q Consensus 247 P~Q~~~F~~ql~lA~~~~lPl~iH~r~ 273 (487)
+.|..+++..-++|...++|++|+..-
T Consensus 110 ~s~~~l~~y~~~ia~~~~~pi~iYn~P 136 (289)
T PF00701_consen 110 PSQEELIDYFRAIADATDLPIIIYNNP 136 (289)
T ss_dssp CCHHHHHHHHHHHHHHSSSEEEEEEBH
T ss_pred chhhHHHHHHHHHHhhcCCCEEEEECC
Confidence 456778888888899999999998864
No 233
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=45.09 E-value=3.1e+02 Score=26.92 Aligned_cols=119 Identities=18% Similarity=0.176 Sum_probs=63.7
Q ss_pred EEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCCH----------------HhHH----HHHHHHh
Q psy4448 4 IDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNV----------------EDSI----SSLKLAQ 63 (487)
Q Consensus 4 iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~~----------------~~~~----~~~~la~ 63 (487)
+|.|+|...... | ...+++++++|.+.|+..+.+.--.+ .++. .+.++.+
T Consensus 1 ~D~H~Ht~~s~d-----~-----~~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~ 70 (253)
T TIGR01856 1 RDGHSHSPFCAH-----G-----TDTLEEVVQEAIQLGFEEICFTEHAPLPFEYPEETALDKMAFSSLPEYFKEINRLKK 70 (253)
T ss_pred CCcccCcCCCCC-----C-----CCCHHHHHHHHHHcCCCEEEecCCCCcccCCCccccccchhHHHHHHHHHHHHHHHH
Confidence 588999864321 2 56799999999999998766542211 1111 2334455
Q ss_pred cCC-CeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEE---ee-C--CCCCCC---------CCCChHHHHH
Q psy4448 64 SDE-RLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFG---EF-G--LDYDRV---------QYCPVETQLK 127 (487)
Q Consensus 64 ~~~-~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIG---EI-G--LD~~~~---------~~~~~e~Q~~ 127 (487)
+|+ .+..-+|+==.+.+ ...+.+++++...+-. ..|| .+ | .|+... .....+..+.
T Consensus 71 ~y~~~i~I~~GiE~~~~~-------~~~~~~~~~l~~~~~D-~vigSvH~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 142 (253)
T TIGR01856 71 EYADKLKILIGLEVDYIP-------GFEDFTKDFLDEYGLD-FVIGSVHFLGGIPIDFDAEEFNEGLVSFYGNLEQAQRD 142 (253)
T ss_pred HhhCCCeEEEEEEecccc-------chHHHHHHHHHHCCCC-eEEEEEEeecCCCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 665 46666676332221 2234556666542111 2233 22 2 444310 0122345566
Q ss_pred HHHHHHHHhhhCC
Q psy4448 128 YFRKQLDLSVTHK 140 (487)
Q Consensus 128 vF~~qL~LA~el~ 140 (487)
-|+.++++++.+.
T Consensus 143 Y~~~~~~~i~~~~ 155 (253)
T TIGR01856 143 YFESVYDSIQALF 155 (253)
T ss_pred HHHHHHHHHHcCC
Confidence 7777777777654
No 234
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=44.86 E-value=2.6e+02 Score=26.93 Aligned_cols=140 Identities=12% Similarity=0.063 Sum_probs=72.7
Q ss_pred CCCHHHHHHHHHhcCCCEEEEECCCHHhHHHHHHHHh-cCCCe-----EEEeecCCCCCCCcCCCchhhHHHHHHHHHhc
Q psy4448 27 EPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQ-SDERL-----YSTVGCHPTRCSEFENDPEGYLQSLDKIIKEG 100 (487)
Q Consensus 27 ~~d~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~la~-~~~~v-----~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~ 100 (487)
..+++++++++.+.|+..+.+. +.....+.+... ..+.+ ...+|+ | ... .......+++.+..
T Consensus 20 ~~d~~~~~~~~~~~g~~av~v~---~~~~~~~~~~~~~~~~~i~~~~~~~~i~~-p--~~~----~~~~~~~v~~a~~~- 88 (235)
T cd00958 20 LEDPEETVKLAAEGGADAVALT---KGIARAYGREYAGDIPLIVKLNGSTSLSP-K--DDN----DKVLVASVEDAVRL- 88 (235)
T ss_pred ccCHHHHHHHHHhcCCCEEEeC---hHHHHhcccccCCCCcEEEEECCCCCCCC-C--CCC----chhhhcCHHHHHHC-
Confidence 5799999999999998866553 333222222211 11211 122222 1 111 12334456666653
Q ss_pred CCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC--c------hHHHHH----HHHHhCCCCCCc
Q psy4448 101 GKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN--A------KSDFIE----IMKEYAPKLPRK 168 (487)
Q Consensus 101 ~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~--a------~~d~l~----iLk~~~~~~~~~ 168 (487)
.+.+ +.+..+. .....+.+.+...+..++|.++++|++|-..- . ..+.++ +..+.+. .
T Consensus 89 --Ga~~---v~~~~~~-~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~Ga----D 158 (235)
T cd00958 89 --GADA---VGVTVYV-GSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGA----D 158 (235)
T ss_pred --CCCE---EEEEEec-CCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCC----C
Confidence 2222 2111111 11124678888999999999999999984422 0 112222 2334443 2
Q ss_pred EEEEecCCCHHHHHHHHcC
Q psy4448 169 GVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 169 ~v~H~FsG~~~~a~~~l~~ 187 (487)
.|-=.|+++.+.++++.+.
T Consensus 159 ~Ik~~~~~~~~~~~~i~~~ 177 (235)
T cd00958 159 IVKTKYTGDAESFKEVVEG 177 (235)
T ss_pred EEEecCCCCHHHHHHHHhc
Confidence 3333577777777776654
No 235
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=44.75 E-value=3.2e+02 Score=26.92 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhhCCCCEEEEecCc--------hHHHHHHHHHhC
Q psy4448 124 TQLKYFRKQLDLSVTHKLPLFLHCRNA--------KSDFIEIMKEYA 162 (487)
Q Consensus 124 ~Q~~vF~~qL~LA~el~lPViIH~r~a--------~~d~l~iLk~~~ 162 (487)
.-.+.+++..++|++.+..+.|+.... ..++.+++++..
T Consensus 120 ~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~~v~ 166 (279)
T cd00019 120 RVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIIDLIK 166 (279)
T ss_pred HHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhcC
Confidence 344667777777778888888876432 356777777664
No 236
>PLN02522 ATP citrate (pro-S)-lyase
Probab=44.64 E-value=2.9e+02 Score=31.36 Aligned_cols=43 Identities=14% Similarity=0.065 Sum_probs=31.7
Q ss_pred cCCCChhhhHHHHHHHHHHhhhCCCCEE-EEecc----chHHHHHHHH
Q psy4448 241 VKSRNEPANIVYFRKQLDLSVTHKLPLF-LHCRN----AKSDFIEIMK 283 (487)
Q Consensus 241 ~~~~n~P~Q~~~F~~ql~lA~~~~lPl~-iH~r~----a~~~~l~il~ 283 (487)
.|.+..+.|.+.|++-|-+..++++..+ +|.++ +..++..-+-
T Consensus 391 ~g~~p~~~~~~~ld~~Lvl~ADHG~~aSt~~aarv~AStg~dl~sava 438 (608)
T PLN02522 391 FKRSLPRYCTKFIEMCIMLCADHGPCVSGAHNTIVTARAGKDLVSSLV 438 (608)
T ss_pred cCCCCCHHHHHHHHHHHHHhccCCCCccHHHHHHHhhccCCcHHHHHH
Confidence 5677888999999999999999999877 46543 3445444443
No 237
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=44.62 E-value=3e+02 Score=26.62 Aligned_cols=131 Identities=11% Similarity=-0.005 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHhcCCCEEEEECCCHHhHHHHHHHHhcCCCeEEEeecCCC--CCCC-----cCCCchhhHHHHHHHH---
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPT--RCSE-----FENDPEGYLQSLDKII--- 97 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~la~~~~~v~~avGiHP~--~~~~-----~~~~~~~~l~~L~~ll--- 97 (487)
.++++.++.+++.|.+.+=+......+...+.++++++.--.++++..+. .... ..+..++..+.+++.+
T Consensus 14 ~~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 93 (254)
T TIGR03234 14 LPFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVALAIAYA 93 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHHHHHHHH
Confidence 47899999999999987644322223455666677766544445543321 1100 0000111123333332
Q ss_pred HhcCCCEEEEEeeCCCCCCCCCCChHHHH----HHHHHHHHHhhhCCCCEEEEec----------CchHHHHHHHHHhC
Q psy4448 98 KEGGKKVVAFGEFGLDYDRVQYCPVETQL----KYFRKQLDLSVTHKLPLFLHCR----------NAKSDFIEIMKEYA 162 (487)
Q Consensus 98 ~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~----~vF~~qL~LA~el~lPViIH~r----------~a~~d~l~iLk~~~ 162 (487)
..-..+++.+ ..|-+.. ..+.+... +.+++..++|.+.|+.+.|+.. ...+++++++++..
T Consensus 94 ~~lg~~~i~~-~~g~~~~---~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~l~t~~~~~~li~~v~ 168 (254)
T TIGR03234 94 RALGCPQVNC-LAGKRPA---GVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPGFFLTTTEQALAVIDDVG 168 (254)
T ss_pred HHhCCCEEEE-CcCCCCC---CCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCCChhcCHHHHHHHHHHhC
Confidence 2211233334 2443321 11222222 4578888899999999998853 24567788887765
No 238
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=44.56 E-value=3.8e+02 Score=27.98 Aligned_cols=34 Identities=9% Similarity=0.012 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhC-CCCEEEEeccchHHHHHHHHH
Q psy4448 251 VYFRKQLDLSVTH-KLPLFLHCRNAKSDFIEIMKE 284 (487)
Q Consensus 251 ~~F~~ql~lA~~~-~lPl~iH~r~a~~~~l~il~~ 284 (487)
+.+++..++|+++ ++|+-+|+.....++-.+++.
T Consensus 186 e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~ 220 (401)
T TIGR02967 186 EQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKEL 220 (401)
T ss_pred HHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHH
Confidence 5688899999999 999999998777665555443
No 239
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=44.19 E-value=3.3e+02 Score=27.23 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=34.3
Q ss_pred CHHHHHHHHHhcCCCEEEEECCCHHhHHHHHHHHhcCC
Q psy4448 29 DIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDE 66 (487)
Q Consensus 29 d~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~la~~~~ 66 (487)
..+..++++.++|++.++++-..+++.+...+.+++++
T Consensus 105 G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~g 142 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHG 142 (258)
T ss_pred CHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcC
Confidence 67889999999999999999888999999998888875
No 240
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=43.75 E-value=4.3e+02 Score=28.16 Aligned_cols=51 Identities=14% Similarity=0.099 Sum_probs=34.0
Q ss_pred EEEEecCchHHHHHHHHHhCCCCCCcEEEEecCCCHHH------HHHHHcCccchhHhhhcCCCceeeccCCC
Q psy4448 143 LFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQ------AVDSLKTKENLETVKSIPEDRLLLETDCP 209 (487)
Q Consensus 143 ViIH~r~a~~d~l~iLk~~~~~~~~~~v~H~FsG~~~~------a~~~l~~~~g~e~v~~iP~driLlETD~P 209 (487)
++.||....++-+++|++.+. .|.||-..+... ++++++. |. ++-|.||++
T Consensus 250 ~~~H~~~l~~~d~~~la~~g~-----~v~~~P~sn~~l~~g~~p~~~~~~~--Gv---------~v~lGtD~~ 306 (435)
T PRK15493 250 VIAHGVVLNDNERAFLAEHDV-----RVAHNPNSNLKLGSGIANVKAMLEA--GI---------KVGIATDSV 306 (435)
T ss_pred EEEEeecCCHHHHHHHHHcCC-----eEEEChHHHHHHhcCcccHHHHHHC--CC---------eEEEccCcc
Confidence 789999998888899987643 688885543211 1222222 22 688999984
No 241
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=43.62 E-value=2.4e+02 Score=29.21 Aligned_cols=111 Identities=19% Similarity=0.218 Sum_probs=75.1
Q ss_pred HHHhhhCCCCEEE----------EeccchHHHHHHHHHhCCCCCCCcEEEEeeCCcccccccccc---h--------hh-
Q psy4448 257 LDLSVTHKLPLFL----------HCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKT---K--------EN- 314 (487)
Q Consensus 257 l~lA~~~~lPl~i----------H~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~~~~~~~~~k~---~--------~~- 314 (487)
.+.+.--+.||+. |.|+=.++-++-+.+.. =++|+|..+ .+++. . +.
T Consensus 176 ~Dvl~~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~g-------GvIgv~~~~----~fl~~~~~~~atldd~v~hI 244 (313)
T COG2355 176 WDVLDLSKAPVVASHSNARALVDHPRNLSDEQLKAIAETG-------GVIGVNFIP----AFLRPGGAARATLDDLVRHI 244 (313)
T ss_pred HHHHhccCCceEEecCCchhccCCCCCCCHHHHHHHHhcC-------CEEEEEeeh----hhccCCCCCCCCHHHHHHHH
Confidence 4555567889887 66888899999888753 266777632 22231 1 11
Q ss_pred HHHhhhCCCCceEeccCCCCCCCCCCCcchhhHhhhhhhhhhhccCCccCCCCCCccccHHHHHHHHHHhhCCCHHHHHH
Q psy4448 315 LETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGP 394 (487)
Q Consensus 315 ~e~v~~iPldrlLlETD~P~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~P~~l~~v~~~iA~ikg~~~~~va~ 394 (487)
.-++..+..|.+=|=||-=+....|. +--.+.-++.+.+.+. -+|.+.+++..
T Consensus 245 ~h~v~~~G~dhVglGsDf~g~~~~p~--------------------------gled~~~l~~l~~~L~-~~G~~e~~i~~ 297 (313)
T COG2355 245 DHFVELVGIDHVGLGSDFDGGTGPPD--------------------------GLEDVGKLPNLTAALI-ERGYSEEEIEK 297 (313)
T ss_pred HHHHHhcCcceeEecccccCCCCCch--------------------------hhcChhHHHHHHHHHH-HcCCCHHHHHH
Confidence 24677889999999999876543321 1223445566655553 35789999999
Q ss_pred HHHHHHHHhcC
Q psy4448 395 IIHQNTLRLFF 405 (487)
Q Consensus 395 ~~~~N~~rlf~ 405 (487)
+.+.|+.|+|.
T Consensus 298 i~~~N~lRV~~ 308 (313)
T COG2355 298 IAGENWLRVLK 308 (313)
T ss_pred HHHHhHHHHHH
Confidence 99999999984
No 242
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=43.07 E-value=1.9e+02 Score=29.43 Aligned_cols=62 Identities=10% Similarity=0.107 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecC------chHHHHHHHHHhCCCCCCcEEEEecCC-CHHHHHHHHcC
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRN------AKSDFIEIMKEYAPKLPRKGVIHSFDG-TPFQAVDSLKT 187 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~------a~~d~l~iLk~~~~~~~~~~v~H~FsG-~~~~a~~~l~~ 187 (487)
.+..+..++.|.+.+.||||-.-. ..+.+..+++........++.+|-=-| +.+.++++++.
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~ 96 (286)
T PRK12738 28 AETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHA 96 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHc
Confidence 456778888888888888885422 223344444332211123577776443 78888888887
No 243
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=43.06 E-value=3e+02 Score=27.83 Aligned_cols=88 Identities=13% Similarity=0.110 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHhcCC-CEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc--hHHHHHHHHHhCCC
Q psy4448 88 GYLQSLDKIIKEGGK-KVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA--KSDFIEIMKEYAPK 164 (487)
Q Consensus 88 ~~l~~L~~ll~~~~~-~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a--~~d~l~iLk~~~~~ 164 (487)
++.+.+.++....++ .++||+=.|-.... .+.. |....+.|++.++++.+|+-.. .+.+.+.+...+.
T Consensus 148 ~~~~~~~~~~~~~~~~~vvG~dl~g~E~~~---~~~~-----~~~~~~~a~~~gl~~t~HaGE~~~~~~~~~ai~~l~~- 218 (331)
T PF00962_consen 148 EWAEEIVELASKYPDKGVVGFDLAGDEDGG---PPLK-----FAPAFRKAREAGLKLTVHAGETGGPEHIRDAILLLGA- 218 (331)
T ss_dssp HHHHHHHHHHHHTTTTTEEEEEEESSTTST---TGGG-----HHHHHHHHHHTT-EEEEEESSSSTHHHHHHHHHTST--
T ss_pred HHHHHHHHHHhhcccceEEEEEecCCcccC---chHH-----HHHHHhhhcccceeecceecccCCcccccchhhhccc-
Confidence 334445555544444 68998888876422 2222 8888888999999999999764 3445555544333
Q ss_pred CCCcEEEEecCC--CHHHHHHHHcC
Q psy4448 165 LPRKGVIHSFDG--TPFQAVDSLKT 187 (487)
Q Consensus 165 ~~~~~v~H~FsG--~~~~a~~~l~~ 187 (487)
..|=|++.- +++.++.+.+.
T Consensus 219 ---~RIgHG~~~~~~p~l~~~~~~~ 240 (331)
T PF00962_consen 219 ---DRIGHGVRLIKDPELLELLAER 240 (331)
T ss_dssp ---SEEEE-GGGGGSHHHHHHHHHT
T ss_pred ---eeecchhhhhhhhHHHHHHHHh
Confidence 578899863 56555555554
No 244
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=42.63 E-value=29 Score=36.94 Aligned_cols=119 Identities=13% Similarity=0.055 Sum_probs=83.2
Q ss_pred HHHHHHHHHhhhCCCCEEEEeccch-HHHHHHHHHhCC-C-CC----------CCcEEEEeeCCcccccccccchhhHHH
Q psy4448 251 VYFRKQLDLSVTHKLPLFLHCRNAK-SDFIEIMKEYAP-K-LP----------RKGVIHSFDGTPFQAVDSLKTKENLET 317 (487)
Q Consensus 251 ~~F~~ql~lA~~~~lPl~iH~r~a~-~~~l~il~~~~~-~-~~----------~~gv~hsfsG~~~~~~~~~k~~~~~e~ 317 (487)
..|.+++++|+++++||.+|++.+. .++..+++.-.. . .. ..|+|+++.+. .. .....++
T Consensus 121 ~~l~~~i~~A~~~g~~v~~Ha~g~~~~~L~a~l~aGi~~dH~~~~~eea~e~l~~G~~i~i~~g-----~~--~~~~~~~ 193 (422)
T cd01295 121 DEMLAKIQAAKKAGKPVDGHAPGLSGEELNAYMAAGISTDHEAMTGEEALEKLRLGMYVMLREG-----SI--AKNLEAL 193 (422)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCCCCcCCCcHHHHHHHHHCCCEEEEECc-----cc--HhhHHHH
Confidence 4688999999999999999999987 677777752110 0 00 36888888742 11 1122356
Q ss_pred hhhCC---CCceEeccCCCCCCCCCCCcchhhHhhhhhhhhhhccCCccCCCCCCccccHHHHHHHHHHhhCCCHHHHHH
Q psy4448 318 VKSIP---EDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGP 394 (487)
Q Consensus 318 v~~iP---ldrlLlETD~P~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~P~~l~~v~~~iA~ikg~~~~~va~ 394 (487)
++.+| ..|++++||+|.. .+. . ....+..+++ ++..+|++++++.+
T Consensus 194 ~~~l~~~~~~~i~l~TD~~~~--~~~-------------------------~---~~g~~~~v~r-~a~~~g~s~~eal~ 242 (422)
T cd01295 194 LPAITEKNFRRFMFCTDDVHP--DDL-------------------------L---SEGHLDYIVR-RAIEAGIPPEDAIQ 242 (422)
T ss_pred HHhhhhccCCeEEEEcCCCCc--hhh-------------------------h---hcchHHHHHH-HHHHcCCCHHHHHH
Confidence 67777 6899999999842 111 0 0123455654 45668999999999
Q ss_pred HHHHHHHHhcCCC
Q psy4448 395 IIHQNTLRLFFPH 407 (487)
Q Consensus 395 ~~~~N~~rlf~~~ 407 (487)
..+.|..++|++.
T Consensus 243 ~aT~n~A~~~gl~ 255 (422)
T cd01295 243 MATINPAECYGLH 255 (422)
T ss_pred HHhHHHHHHcCCC
Confidence 9999999999884
No 245
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=42.56 E-value=50 Score=32.78 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=27.6
Q ss_pred HHHHHhhhCCCCEEEEecCc----hHHHHHHHHHhCCCCCCcEEEEecCCC
Q psy4448 131 KQLDLSVTHKLPLFLHCRNA----KSDFIEIMKEYAPKLPRKGVIHSFDGT 177 (487)
Q Consensus 131 ~qL~LA~el~lPViIH~r~a----~~d~l~iLk~~~~~~~~~~v~H~FsG~ 177 (487)
..|+-+.+.|+||+|=+-.+ .++.++++++.+.. .-.++||.|+=
T Consensus 104 ~lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~~~~~~~--~l~llHC~s~Y 152 (241)
T PF03102_consen 104 PLLEYIAKTGKPVILSTGMSTLEEIERAVEVLREAGNE--DLVLLHCVSSY 152 (241)
T ss_dssp HHHHHHHTT-S-EEEE-TT--HHHHHHHHHHHHHHCT----EEEEEE-SSS
T ss_pred HHHHHHHHhCCcEEEECCCCCHHHHHHHHHHHHhcCCC--CEEEEecCCCC
Confidence 35677778999999988775 34667777655543 24799999864
No 246
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=42.53 E-value=5e+02 Score=29.21 Aligned_cols=40 Identities=15% Similarity=0.063 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHhcCCCEEEEEC----------CCHHhHHHHHHHHhcCCC
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTG----------TNVEDSISSLKLAQSDER 67 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~----------~~~~~~~~~~~la~~~~~ 67 (487)
.+.-.++....++|+..+=+.| .+...|+.+..+.+..|+
T Consensus 21 ~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~ 70 (582)
T TIGR01108 21 EDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPN 70 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCC
Confidence 4555677778888987543321 345667777766655554
No 247
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=42.40 E-value=1e+02 Score=31.40 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=28.2
Q ss_pred ChhhhHHHHHHHHHHhhhCCCCEEEEe---ccchHHHHHHHHHh
Q psy4448 245 NEPANIVYFRKQLDLSVTHKLPLFLHC---RNAKSDFIEIMKEY 285 (487)
Q Consensus 245 n~P~Q~~~F~~ql~lA~~~~lPl~iH~---r~a~~~~l~il~~~ 285 (487)
|.|.|...++..-.+|...++|++|=. |-..+-..+.+.+.
T Consensus 111 ~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~l 154 (299)
T COG0329 111 NKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARL 154 (299)
T ss_pred cCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHH
Confidence 456688888888888888899999876 33444444444444
No 248
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=42.24 E-value=40 Score=35.26 Aligned_cols=123 Identities=11% Similarity=0.082 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHHhCCCCCCCcEEEEeeCCccccc-----------------ccc---
Q psy4448 250 IVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAV-----------------DSL--- 309 (487)
Q Consensus 250 ~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~~~~~~-----------------~~~--- 309 (487)
.+.+++.+++|+++++|+.+|+..+..+..+++.-..+. ..+.|+|.+...+.. +.+
T Consensus 172 ~~~l~~~~~~A~~~g~~v~iH~~e~~~~~~~~~~~l~~g---~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 248 (379)
T PRK12394 172 LKPLTETLRIANDLRCPVAVHSTHPVLPMKELVSLLRRG---DIIAHAFHGKGSTILTEEGAVLAEVRQARERGVIFDAA 248 (379)
T ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHhcCCC---CEEEecCCCCCCCcCCCCCCChHHHHHHHhCCeEEEec
Confidence 567899999999999999999988877776665543332 245677765310000 000
Q ss_pred --cchhh----HHHhhh-CCCCceEeccCCCCCCCCCCCcchhhHhhhhhhhhhhccCCccCCCCCCccccHHHHHHHHH
Q psy4448 310 --KTKEN----LETVKS-IPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVA 382 (487)
Q Consensus 310 --k~~~~----~e~v~~-iPldrlLlETD~P~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~P~~l~~v~~~iA 382 (487)
.++.+ .++++. + -...|=||.+-.. ...+....+..++.+..
T Consensus 249 ~g~s~~~~~~~~~~l~~G~--~~~~lgTD~~~~~-----------------------------~~~~~~~~l~~~~~~~~ 297 (379)
T PRK12394 249 NGRSHFDMNVARRAIANGF--LPDIISSDLSTIT-----------------------------KLAWPVYSLPWVLSKYL 297 (379)
T ss_pred CCccccchHHHHHHHHCCC--CceEEECCCCCCC-----------------------------cccCccchHHHHHHHHH
Confidence 01111 123322 2 1226677775210 00011134555555533
Q ss_pred HhhCCCHHHHHHHHHHHHHHhcCCC
Q psy4448 383 AVRGVEREKLGPIIHQNTLRLFFPH 407 (487)
Q Consensus 383 ~ikg~~~~~va~~~~~N~~rlf~~~ 407 (487)
-.+++++++.+..+.|..++|++.
T Consensus 298 -~~~~~~~~~~~~at~~~a~~~g~~ 321 (379)
T PRK12394 298 -ALGMALEDVINACTHTPAVLMGMA 321 (379)
T ss_pred -HcCCCHHHHHHHHHHHHHHHhCCC
Confidence 368999999999999999999985
No 249
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=42.04 E-value=3.7e+02 Score=26.89 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=35.8
Q ss_pred CEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC-chHHHHHHHHHh
Q psy4448 103 KVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN-AKSDFIEIMKEY 161 (487)
Q Consensus 103 ~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~-a~~d~l~iLk~~ 161 (487)
.++..|-.|-=+ . -+.+..+++++...+.+.. +.||+.|+-. ..++++++.+..
T Consensus 35 Gi~~~GstGE~~-~---Ls~~Er~~~~~~~~~~~~~-~~~vi~gv~~~s~~~~i~~a~~a 89 (285)
T TIGR00674 35 AIVVVGTTGESP-T---LSHEEHKKVIEFVVDLVNG-RVPVIAGTGSNATEEAISLTKFA 89 (285)
T ss_pred EEEECccCcccc-c---CCHHHHHHHHHHHHHHhCC-CCeEEEeCCCccHHHHHHHHHHH
Confidence 455556666432 2 2467888888888887753 6899988854 466777766544
No 250
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=41.69 E-value=77 Score=33.56 Aligned_cols=50 Identities=20% Similarity=0.343 Sum_probs=37.1
Q ss_pred hCCCCEEEEecC--------------chHHHHHHHHHhCCCCCCc-----EEEEecCCCHHHHHHHHcC
Q psy4448 138 THKLPLFLHCRN--------------AKSDFIEIMKEYAPKLPRK-----GVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 138 el~lPViIH~r~--------------a~~d~l~iLk~~~~~~~~~-----~v~H~FsG~~~~a~~~l~~ 187 (487)
..++-|+||+.+ ..+++++.+++|......+ .++...+.+.+.|+++.++
T Consensus 227 ~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~l 295 (371)
T PRK14461 227 PINLAISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARL 295 (371)
T ss_pred CceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHH
Confidence 356778899865 3568889888885322122 4678899999999998887
No 251
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=41.36 E-value=65 Score=39.23 Aligned_cols=63 Identities=17% Similarity=0.330 Sum_probs=41.6
Q ss_pred CcEEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC-CHHhHHHHHHHHhcCCCeEEEee
Q psy4448 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT-NVEDSISSLKLAQSDERLYSTVG 73 (487)
Q Consensus 1 m~~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~-~~~~~~~~~~la~~~~~v~~avG 73 (487)
|+++|.|+|.... + -.| ...+++++++|++.|+..+.+.-. +........+.+++. ++.+-+|
T Consensus 1 m~fv~LHvHS~yS-l---Ldg-----~~~i~elv~~A~~~G~~alAiTDh~~l~G~~~f~~~~~~~-gIkpIiG 64 (1170)
T PRK07374 1 MAFVPLHNHSDYS-L---LDG-----ASQLPKMVERAKELGMPAIALTDHGVMYGAIELLKLCKGK-GIKPIIG 64 (1170)
T ss_pred CCcccccccCcCc-h---hhc-----cCCHHHHHHHHHHCCCCEEEEecCCchHHHHHHHHHHHHc-CCeEEEE
Confidence 7899999998853 1 123 578999999999999998776532 234444444555543 3444444
No 252
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=41.21 E-value=3.8e+02 Score=26.82 Aligned_cols=137 Identities=14% Similarity=0.125 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHhcCCCEEEEECC-------CHHhHHHHHHHHhcC-CCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHh
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTGT-------NVEDSISSLKLAQSD-ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKE 99 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~~-------~~~~~~~~~~la~~~-~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~ 99 (487)
+.+...++...+.||+.+++.|+ +.++..++++.+.+. ..++..+|- .. ..+.++. .+.+.+
T Consensus 20 ~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi~gvg~--~~-------~~~ai~~-a~~a~~ 89 (279)
T cd00953 20 EKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVIFQVGS--LN-------LEESIEL-ARAAKS 89 (279)
T ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEEEEeCc--CC-------HHHHHHH-HHHHHH
Confidence 34556788888999999998876 456666666654332 346666662 11 1233333 333443
Q ss_pred cCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC---c---hHHHHHHHH-HhCCCCCCcEEEE
Q psy4448 100 GGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN---A---KSDFIEIMK-EYAPKLPRKGVIH 172 (487)
Q Consensus 100 ~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~---a---~~d~l~iLk-~~~~~~~~~~v~H 172 (487)
-.+.|| -+-..||. ... .|..+++..-++|. ++||+|..-- . .-+++.-|. ..+. ..+|=.
T Consensus 90 --~Gad~v-~v~~P~y~-~~~---~~~~i~~yf~~v~~--~lpv~iYn~P~~tg~~l~~~~l~~L~~~~p~---vvgiK~ 157 (279)
T cd00953 90 --FGIYAI-ASLPPYYF-PGI---PEEWLIKYFTDISS--PYPTFIYNYPKATGYDINARMAKEIKKAGGD---IIGVKD 157 (279)
T ss_pred --cCCCEE-EEeCCcCC-CCC---CHHHHHHHHHHHHh--cCCEEEEeCccccCCCCCHHHHHHHHhcCCC---EEEEEe
Confidence 234455 24456553 111 25666677777776 8999998532 1 224444443 2222 233433
Q ss_pred ecCCCHHHHHHHHcC
Q psy4448 173 SFDGTPFQAVDSLKT 187 (487)
Q Consensus 173 ~FsG~~~~a~~~l~~ 187 (487)
-+|+.....++.+.
T Consensus 158 -s~~d~~~~~~~~~~ 171 (279)
T cd00953 158 -TNEDISHMLEYKRL 171 (279)
T ss_pred -CccCHHHHHHHHHh
Confidence 46777777665543
No 253
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=41.06 E-value=42 Score=34.62 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=32.5
Q ss_pred cHHHHHHHHHHhh--CCCHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy4448 373 NIVQILEIVAAVR--GVEREKLGPIIHQNTLRLFFPHELPTPT 413 (487)
Q Consensus 373 ~l~~v~~~iA~ik--g~~~~~va~~~~~N~~rlf~~~~~~~~~ 413 (487)
.+..++..+++++ |++..+|.+.+++|.-++.++..+.+..
T Consensus 284 Pv~dla~~mSKllalgmpl~~Vi~avT~npA~~i~l~~~gtLa 326 (386)
T COG3964 284 PVYDLAWIMSKLLALGMPLTDVINAVTHNPAVLIGLAEIGTLA 326 (386)
T ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHhcCHHHHhCccccCccC
Confidence 3556666777775 8999999999999999999988555444
No 254
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=40.95 E-value=1.3e+02 Score=30.69 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=60.6
Q ss_pred HHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCC-CCEEEEecCc--hHHHHHHHHHhCCCCCCc
Q psy4448 92 SLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHK-LPLFLHCRNA--KSDFIEIMKEYAPKLPRK 168 (487)
Q Consensus 92 ~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~-lPViIH~r~a--~~d~l~iLk~~~~~~~~~ 168 (487)
...++....++.++|||=.|-+.. . +.=...|...++.|++.+ +++.+|+-.. ...+.+.+.-. . .
T Consensus 124 ~~~~l~~~~~~~vvG~Dl~g~E~~----~--~~~~~~f~~~~~~ar~~g~l~~t~HaGE~~~~~~v~~~~~~~-~----~ 192 (305)
T cd00443 124 EILELAKFLSNYVVGIDLVGDESK----G--ENPLRDFYSYYEYARRLGLLGLTLHCGETGNREELLQALLLL-P----D 192 (305)
T ss_pred HHHHHHHHhcCCEEEEEcCCCCCC----C--CCCHHHHHHHHHHHHHcCCcceEEeecCCCChHHHHHHHHhc-c----c
Confidence 333444433345777776665421 1 011456788899999999 9999999864 33444544322 2 4
Q ss_pred EEEEecCCCH--HHHHHHHcCccchhHhhhcCCCceeecc
Q psy4448 169 GVIHSFDGTP--FQAVDSLKTKENLETVKSIPEDRLLLET 206 (487)
Q Consensus 169 ~v~H~FsG~~--~~a~~~l~~~~g~e~v~~iP~driLlET 206 (487)
.|-|++.-.. +.++.+.+. +. .+..+|..++.+.+
T Consensus 193 RIgHg~~~~~~p~~~~~l~~~--~i-~ie~CP~SN~~~~~ 229 (305)
T cd00443 193 RIGHGIFLLKHPELIYLVKLR--NI-PIEVCPTSNVVLGT 229 (305)
T ss_pred eeeceEecCCCHHHHHHHHHc--CC-EEEECcchhhhhcC
Confidence 6888877554 777777666 22 34556666655543
No 255
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=40.78 E-value=1.7e+02 Score=27.24 Aligned_cols=62 Identities=8% Similarity=-0.075 Sum_probs=32.2
Q ss_pred EEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEec-Cch-HHHHHHHHHhCCCCCCcEEEEecCCC
Q psy4448 104 VVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCR-NAK-SDFIEIMKEYAPKLPRKGVIHSFDGT 177 (487)
Q Consensus 104 vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r-~a~-~d~l~iLk~~~~~~~~~~v~H~FsG~ 177 (487)
+.+| |+|+++.. .. ..+.++..-+.. -+.|+++|.. ... ...++.+.+.+.. ..++|..++.
T Consensus 26 i~~i-eig~~~~~-~~-----g~~~i~~i~~~~--~~~~i~~~~~v~~~~~~~~~~~~~aGad---~i~~h~~~~~ 89 (202)
T cd04726 26 VDII-EAGTPLIK-SE-----GMEAVRALREAF--PDKIIVADLKTADAGALEAEMAFKAGAD---IVTVLGAAPL 89 (202)
T ss_pred CCEE-EcCCHHHH-Hh-----CHHHHHHHHHHC--CCCEEEEEEEeccccHHHHHHHHhcCCC---EEEEEeeCCH
Confidence 5566 99988743 11 122222221111 3789999853 222 2334555565552 4677887643
No 256
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=40.75 E-value=1.7e+02 Score=29.01 Aligned_cols=42 Identities=17% Similarity=0.126 Sum_probs=31.3
Q ss_pred CCCChhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHH
Q psy4448 242 KSRNEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKE 284 (487)
Q Consensus 242 ~~~n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~ 284 (487)
+..+.|.-+....+.+..|++.|+|+-+++... ++.-+.+++
T Consensus 181 ~~~~~~~v~~a~~~v~~aa~a~G~~~g~~~~~~-~~~~~~~~~ 222 (249)
T TIGR03239 181 GNPNHPDVQKAIRHIFDRAAAHGKPCGILAPVE-ADARRYLEW 222 (249)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCEEEcCCCH-HHHHHHHHc
Confidence 445667788888999999999999999888554 444444443
No 257
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=40.73 E-value=2.3e+02 Score=28.78 Aligned_cols=95 Identities=6% Similarity=0.074 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhhCCCCEEEEecCc------hHHHHHHHHHhCCCCCCcEEEEecC-CCHHHHHHHHcCccchhHhhhcCC
Q psy4448 127 KYFRKQLDLSVTHKLPLFLHCRNA------KSDFIEIMKEYAPKLPRKGVIHSFD-GTPFQAVDSLKTKENLETVKSIPE 199 (487)
Q Consensus 127 ~vF~~qL~LA~el~lPViIH~r~a------~~d~l~iLk~~~~~~~~~~v~H~Fs-G~~~~a~~~l~~~~g~e~v~~iP~ 199 (487)
+..+..++.|.+.+-||||-.-.. .+.+..+++........++.+|-=- .+.+..+++++. |+
T Consensus 27 e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~--GF-------- 96 (282)
T TIGR01858 27 ETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDHHESLDDIRQKVHA--GV-------- 96 (282)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHc--CC--------
Confidence 567778888888888888765432 2334444433221111357777643 367888888888 54
Q ss_pred CceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccccCCC-ChhhhHHHHHHHHHHhhhCCCCE
Q psy4448 200 DRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSR-NEPANIVYFRKQLDLSVTHKLPL 267 (487)
Q Consensus 200 driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-n~P~Q~~~F~~ql~lA~~~~lPl 267 (487)
.-+ +.|++. +...+++.-++-.++|...|.+|
T Consensus 97 tSV------------------------------------M~DgS~lp~eeNi~~T~~vv~~Ah~~gv~V 129 (282)
T TIGR01858 97 RSA------------------------------------MIDGSHFPFAQNVKLVKEVVDFCHRQDCSV 129 (282)
T ss_pred CEE------------------------------------eecCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 111 112211 34567778888889999998876
No 258
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=40.72 E-value=3.2e+02 Score=28.09 Aligned_cols=111 Identities=23% Similarity=0.278 Sum_probs=69.2
Q ss_pred HHHHHHHHhhhCCCCEE-EE---------eccchHHHHHHHHHhCCCCCCCcEEEEeeCCccccccccc---ch------
Q psy4448 252 YFRKQLDLSVTHKLPLF-LH---------CRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLK---TK------ 312 (487)
Q Consensus 252 ~F~~ql~lA~~~~lPl~-iH---------~r~a~~~~l~il~~~~~~~~~~gv~hsfsG~~~~~~~~~k---~~------ 312 (487)
-|..-++++ ..||+ -| .|+--++.++.+.+. |=++|++... ..++ ..
T Consensus 179 ~~~dv~~~s---~~PviaSHsn~ral~~h~RNltD~~i~~ia~~-------GGvigi~~~~----~fl~~~~~~~~~~~~ 244 (309)
T cd01301 179 TFWDVLDIS---NAPVIASHSNARALCDHPRNLTDAQLKAIAET-------GGVIGVNFYP----AFLSPGADATLDDVV 244 (309)
T ss_pred HHHHHHHhc---CCCEEEeccChHHhcCCCCCCCHHHHHHHHHc-------CCEEEEeeeH----HHhCCCCCCCHHHHH
Confidence 345555555 68876 44 456678888888774 2255555421 1221 00
Q ss_pred hhH-HHhhhCCCCceEeccCCCCCCCCCCCcchhhHhhhhhhhhhhccCCccCCCCCCccccHHHHHHHHHHhhCCCHHH
Q psy4448 313 ENL-ETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREK 391 (487)
Q Consensus 313 ~~~-e~v~~iPldrlLlETD~P~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~P~~l~~v~~~iA~ikg~~~~~ 391 (487)
+.. -+++.+..|.+-+=||--.....| .+-..++.++.+.+.+.+ +|.+.++
T Consensus 245 ~hi~~i~~l~G~dhVgiGsDfdg~~~~~--------------------------~gl~~~~~~~~l~~~L~~-rG~s~~~ 297 (309)
T cd01301 245 RHIDYIVDLIGIDHVGLGSDFDGIGGTP--------------------------GGLEDVSDLPNLTAELLE-RGYSEEE 297 (309)
T ss_pred HHHHHHHHhcCCCeEEECcccCCCCCCc--------------------------cccCCHHHHHHHHHHHHH-cCCCHHH
Confidence 112 356668999999999974421111 122345566667666655 7999999
Q ss_pred HHHHHHHHHHHh
Q psy4448 392 LGPIIHQNTLRL 403 (487)
Q Consensus 392 va~~~~~N~~rl 403 (487)
+..++..|+.|+
T Consensus 298 i~~i~g~N~lRv 309 (309)
T cd01301 298 IEKIAGGNFLRV 309 (309)
T ss_pred HHHHHhhchhcC
Confidence 999999999874
No 259
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=40.67 E-value=2.3e+02 Score=29.90 Aligned_cols=178 Identities=13% Similarity=0.137 Sum_probs=94.6
Q ss_pred EEECCCHHhHHHHHHHHhcCCCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHH
Q psy4448 46 IVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQ 125 (487)
Q Consensus 46 i~v~~~~~~~~~~~~la~~~~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q 125 (487)
...+.||+.+.++++...+...-.+-+.+.|. ...+.|+..- +.+|-+ | ..-
T Consensus 139 r~~Sgdpekfa~ave~v~~~~~pv~l~s~dpe----------vmkaaLev~~-dqkPll---------Y--------aAt 190 (467)
T COG1456 139 RNRSGDPEKFAEAVEKVAEAGLPVILCSFDPE----------VMKAALEVVK-DQKPLL---------Y--------AAT 190 (467)
T ss_pred EecCCCHHHHHHHHHHHHhcCCcEEEEeCCHH----------HHHHHHHHhh-ccCcee---------e--------ecc
Confidence 34467999999999988776543333444442 1112233222 211221 1 112
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHhCCCCCCcEEE--EecCCCH---HHHHHHHcCccchhHhhhcCCC
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVI--HSFDGTP---FQAVDSLKTKENLETVKSIPED 200 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~~~~~~~~~v~--H~FsG~~---~~a~~~l~~~~g~e~v~~iP~d 200 (487)
++-+...++||.+++.||++|+.+..+++-.+..++....-..+|+ |-|.|+. ++...++.. .+..|..
T Consensus 191 e~n~~e~~klav~y~vplvl~a~~dl~~lk~la~~~~~~Gi~divLdPgT~p~~egl~~T~d~~v~i--Rr~aIe~---- 264 (467)
T COG1456 191 EDNWKEFAKLAVEYKVPLVLSAFNDLDDLKNLAVTYAQAGIKDIVLDPGTYPGGEGLKDTFDNFVMI--RRAAIEG---- 264 (467)
T ss_pred cccHHHHHHHHhhcCCcEEEeccCCHHHHHHHHHHHHHcCCceEEecCCcccCccchhHHHHHHHHH--HHHHhhc----
Confidence 3345678999999999999999888888777766553221113455 4555542 223333322 1111110
Q ss_pred ceeeccCC--CCCCCCCCCcccchhcccchhhhhhccCCccccCCCChhhhHHHHHHHHHH--hhhCCCCEEEEeccchH
Q psy4448 201 RLLLETDC--PWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVYFRKQLDL--SVTHKLPLFLHCRNAKS 276 (487)
Q Consensus 201 riLlETD~--P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~P~Q~~~F~~ql~l--A~~~~lPl~iH~r~a~~ 276 (487)
.++|. |-+ ..|.+. .+-....|.--.+|++-+.- -.+++--+++|+..-|.
T Consensus 265 ---~d~~~~yPim------------~~p~~~----------~~~~~dd~V~a~~~Ea~iAs~~~~rYaDilI~~~~e~w~ 319 (467)
T COG1456 265 ---FDKDFAYPIM------------ALPFTA----------WMFGEDDPVSASYWEAVIASTFMNRYADILILHSLEPWA 319 (467)
T ss_pred ---cCccccceee------------ecchhh----------hhhccCchHHHHHHHHHHHHHHHHhhcceEEecccchhh
Confidence 01111 111 111110 01223456666778877754 45777889999998887
Q ss_pred HHHHHH
Q psy4448 277 DFIEIM 282 (487)
Q Consensus 277 ~~l~il 282 (487)
-+=.+-
T Consensus 320 ~mPvlt 325 (467)
T COG1456 320 LMPVLT 325 (467)
T ss_pred hcchhh
Confidence 654443
No 260
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=40.57 E-value=4.7e+02 Score=27.82 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHHh
Q psy4448 250 IVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEY 285 (487)
Q Consensus 250 ~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~ 285 (487)
.+.+++.+++|.++|+|+.+|+..+.++....++..
T Consensus 201 ~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~ 236 (443)
T PRK09045 201 DENLERIRTLAEQLDLPIHIHLHETAQEIADSLKQH 236 (443)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecCcHHHHHHHHHHh
Confidence 367889999999999999999987777766666543
No 261
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=40.50 E-value=2.5e+02 Score=34.16 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=36.5
Q ss_pred CcEEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC-CHHhHHHHHHHHhcC
Q psy4448 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT-NVEDSISSLKLAQSD 65 (487)
Q Consensus 1 m~~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~-~~~~~~~~~~la~~~ 65 (487)
|+++-.|||....- -.| ...+++++++|++.|...+.+.-. +.-..-+....|++.
T Consensus 1 m~fvhLhvhS~ySl----Ldg-----~~~i~~lv~~A~~~g~~alAlTDh~~m~Ga~~F~~~a~~~ 57 (1107)
T PRK06920 1 MKFVHLQCQTVFSL----LKS-----ACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKH 57 (1107)
T ss_pred CCceeeecCcccch----hcc-----CCCHHHHHHHHHHCCCCEEEEEeCChHhHHHHHHHHHHHc
Confidence 77888888877532 234 678999999999999987766422 223333334445554
No 262
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=40.37 E-value=1.2e+02 Score=30.44 Aligned_cols=43 Identities=2% Similarity=-0.106 Sum_probs=32.7
Q ss_pred ccCCCChhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHH
Q psy4448 240 MVKSRNEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMK 283 (487)
Q Consensus 240 ~~~~~n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~ 283 (487)
+.+..+.|.-+..+++.++.|++.|+|+-+++... ++.-+.+.
T Consensus 186 ~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~~~~~-~~a~~~~~ 228 (267)
T PRK10128 186 YPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVDP-DMAQKCLA 228 (267)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEcCCCH-HHHHHHHH
Confidence 34567789999999999999999999998877554 33444443
No 263
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=40.36 E-value=4e+02 Score=26.76 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=50.6
Q ss_pred CHHHHHHHHHhcCCCEEEEECCCHHhHHHHHHHHhcCCCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEE
Q psy4448 29 DIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFG 108 (487)
Q Consensus 29 d~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~la~~~~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIG 108 (487)
..+..++++.++|++.++++-..+++.....+.++++. +.+.+-+=|.- . .+.++.++..-.+-+..|+
T Consensus 107 G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~g-i~~I~lv~PtT-------~---~eri~~i~~~a~gFIY~vS 175 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYN-IELILLIAPTS-------S---KSRIQKIARAAPGCIYLVS 175 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcC-CCEEEEECCCC-------C---HHHHHHHHHhCCCcEEEEc
Confidence 67889999999999999999998999988888888765 23333344532 1 2345555544323456666
Q ss_pred eeCCCC
Q psy4448 109 EFGLDY 114 (487)
Q Consensus 109 EIGLD~ 114 (487)
--|.--
T Consensus 176 ~~GvTG 181 (263)
T CHL00200 176 TTGVTG 181 (263)
T ss_pred CCCCCC
Confidence 666653
No 264
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=40.26 E-value=71 Score=38.08 Aligned_cols=56 Identities=23% Similarity=0.330 Sum_probs=39.5
Q ss_pred CcEEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEEC-CCHHhHHHHHHHHhcC
Q psy4448 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTG-TNVEDSISSLKLAQSD 65 (487)
Q Consensus 1 m~~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~-~~~~~~~~~~~la~~~ 65 (487)
|.++|.|||....-+ .| ...+++++++|++.|+..+.+.- .+...+....+.+++.
T Consensus 1 m~fv~LHvHS~ySlL----Dg-----~~~~~elv~~Ak~~G~~avAITDh~~l~G~~~f~~~a~~~ 57 (973)
T PRK07135 1 MKLINLHTNTEYSFL----SS-----TIKLDSLIKYAKENNLKTLVLTDHNNMFGVPKFYKLCKKN 57 (973)
T ss_pred CCccccccCccCccc----cc-----CCCHHHHHHHHHHcCCCEEEEecCCcHHhHHHHHHHHHHc
Confidence 779999999885311 23 57899999999999998776653 2345555555566554
No 265
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=39.83 E-value=2.2e+02 Score=29.34 Aligned_cols=97 Identities=12% Similarity=0.153 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCc------hHHHHHHHHHhCCCCC-CcEEEEecCC-CHHHHHHHHcCccchhHhhhc
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNA------KSDFIEIMKEYAPKLP-RKGVIHSFDG-TPFQAVDSLKTKENLETVKSI 197 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a------~~d~l~iLk~~~~~~~-~~~v~H~FsG-~~~~a~~~l~~~~g~e~v~~i 197 (487)
.+..+..++.|.+.+.||||-.-.. .+.+..+++......+ .++.+|-=-| +.+..+++++. |+.
T Consensus 27 ~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~--Gft----- 99 (307)
T PRK05835 27 FEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKA--GFT----- 99 (307)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHc--CCC-----
Confidence 3457778888999999998876442 2223333332211111 3577776444 78888888888 540
Q ss_pred CCCceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccccCCC-ChhhhHHHHHHHHHHhhhCCCCEE
Q psy4448 198 PEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSR-NEPANIVYFRKQLDLSVTHKLPLF 268 (487)
Q Consensus 198 P~driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-n~P~Q~~~F~~ql~lA~~~~lPl~ 268 (487)
- .+.+++. +..-+++.-++-.++|...|.+|=
T Consensus 100 ---S------------------------------------VM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VE 132 (307)
T PRK05835 100 ---S------------------------------------VMIDASHHAFEENLELTSKVVKMAHNAGVSVE 132 (307)
T ss_pred ---E------------------------------------EEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 1 1223332 445677888888999999998863
No 266
>PTZ00066 pyruvate kinase; Provisional
Probab=39.78 E-value=1.6e+02 Score=32.56 Aligned_cols=105 Identities=21% Similarity=0.214 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHhcCCCEEEEECC--CHHhHHHHHHHHhcCCCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCE
Q psy4448 27 EPDIDHVLNRAWNAGLEKIIVTGT--NVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKV 104 (487)
Q Consensus 27 ~~d~~~vl~ra~~~GV~~ii~v~~--~~~~~~~~~~la~~~~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~v 104 (487)
..|.+++++-+.+.||+.+ ..++ +.++...+.++.++. |-|+.-+.... ..+.++.|.+++..-..=.
T Consensus 209 ekD~~dI~~f~~~~~vD~I-alSFVr~a~DI~~~r~~l~~~-------g~~~~IiAKIE--~~~av~NldeIl~~sDGIM 278 (513)
T PTZ00066 209 EKDKNDILNFAIPMGCDFI-ALSFVQSADDVRLCRQLLGER-------GRHIKIIPKIE--NIEGLINFDEILAESDGIM 278 (513)
T ss_pred HHHHHHHHHHHHhcCCCEE-EECCCCCHHHHHHHHHHHHhC-------CCCceEEEEEC--CHHHHHHHHHHHHhcCEEE
Confidence 3466666677889999854 4444 677887777776653 22443333321 2345778888887643346
Q ss_pred EEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEe
Q psy4448 105 VAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHC 147 (487)
Q Consensus 105 vaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~ 147 (487)
+|=|-.|+...- .. -...|+ +.++.|+++++||++=+
T Consensus 279 VARGDLGvEip~-e~-vp~~QK----~II~~c~~~gkPVIvAT 315 (513)
T PTZ00066 279 VARGDLGMEIPP-EK-VFLAQK----MMISKCNVAGKPVITAT 315 (513)
T ss_pred EEccccccccCh-HH-cchHHH----HHHHHHHHhCCCEEEec
Confidence 788889987532 11 123454 45788999999999855
No 267
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=39.50 E-value=1.8e+02 Score=29.52 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=18.2
Q ss_pred HHHHHHHhhhCCCCEEEEe--ccchHHHHHHHH
Q psy4448 253 FRKQLDLSVTHKLPLFLHC--RNAKSDFIEIMK 283 (487)
Q Consensus 253 F~~ql~lA~~~~lPl~iH~--r~a~~~~l~il~ 283 (487)
|+.-=++++..+.||++|- -=..+++-++++
T Consensus 189 ~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~ 221 (282)
T TIGR01859 189 FERLKEIKELTNIPLVLHGASGIPEEQIKKAIK 221 (282)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH
Confidence 3333455667788888887 444445444444
No 268
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=39.36 E-value=3.8e+02 Score=26.27 Aligned_cols=102 Identities=18% Similarity=0.185 Sum_probs=0.0
Q ss_pred CchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHH-------------HHHHHHHHHhhhCCCCEEEEecCch
Q psy4448 85 DPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQL-------------KYFRKQLDLSVTHKLPLFLHCRNAK 151 (487)
Q Consensus 85 ~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~-------------~vF~~qL~LA~el~lPViIH~r~a~ 151 (487)
+.+.+.+.++.+.+. .+-+| |+|+.|+..-......|. ..|+..-++.+..+.|+++=+.-..
T Consensus 12 ~~~~~~~~~~~l~~~---Gad~i-el~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~ 87 (242)
T cd04724 12 DLETTLEILKALVEA---GADII-ELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNP 87 (242)
T ss_pred CHHHHHHHHHHHHHC---CCCEE-EECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCH
Q ss_pred ------HHHHHHHHHhCCCCCCcEEE---EecCCCHHHHHHHHcCccchhHhhhcCCCceee
Q psy4448 152 ------SDFIEIMKEYAPKLPRKGVI---HSFDGTPFQAVDSLKTKENLETVKSIPEDRLLL 204 (487)
Q Consensus 152 ------~d~l~iLk~~~~~~~~~~v~---H~FsG~~~~a~~~l~~~~g~e~v~~iP~driLl 204 (487)
+++++.+++.+. ...++ | .++...+++. ++...++-+++
T Consensus 88 ~~~~G~~~fi~~~~~aG~---~giiipDl~-----~ee~~~~~~~------~~~~g~~~i~~ 135 (242)
T cd04724 88 ILQYGLERFLRDAKEAGV---DGLIIPDLP-----PEEAEEFREA------AKEYGLDLIFL 135 (242)
T ss_pred HHHhCHHHHHHHHHHCCC---cEEEECCCC-----HHHHHHHHHH------HHHcCCcEEEE
No 269
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=39.24 E-value=2.1e+02 Score=29.22 Aligned_cols=96 Identities=10% Similarity=0.161 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCc-------hHHHHHHHHHhCCCC--CCcEEEEecCCCHHHHHHHHcCccchhHhhh
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNA-------KSDFIEIMKEYAPKL--PRKGVIHSFDGTPFQAVDSLKTKENLETVKS 196 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a-------~~d~l~iLk~~~~~~--~~~~v~H~FsG~~~~a~~~l~~~~g~e~v~~ 196 (487)
.+..+..++.|.+.+.||||-.-.. .+.+..+++...... ..++++|-=-|+.+.++++++. |+..|
T Consensus 28 ~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLDH~~~~~i~~ai~~--GftSV-- 103 (293)
T PRK07315 28 LEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHLDHGHYEDALECIEV--GYTSI-- 103 (293)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHc--CCCEE--
Confidence 4567888999999999999876432 233334343322111 1357888766788899999887 54111
Q ss_pred cCCCceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccccCC-CChhhhHHHHHHHHHHhhhCCCCE
Q psy4448 197 IPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKS-RNEPANIVYFRKQLDLSVTHKLPL 267 (487)
Q Consensus 197 iP~driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~n~P~Q~~~F~~ql~lA~~~~lPl 267 (487)
++|++ -+...+++.-++-.++|..+|.||
T Consensus 104 ------------------------------------------m~d~S~l~~eEni~~t~~v~~~a~~~gv~v 133 (293)
T PRK07315 104 ------------------------------------------MFDGSHLPVEENLKLAKEVVEKAHAKGISV 133 (293)
T ss_pred ------------------------------------------EEcCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 11221 134556778888899999999988
No 270
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=38.85 E-value=5.3e+02 Score=27.79 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHhcCCCEEEEECCCHHhH
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTGTNVEDS 55 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~~~~~~~ 55 (487)
+.+...+.+|.+.|...+-+..-+|..|
T Consensus 141 GG~~~a~~~a~~~g~~afqiF~~npr~w 168 (413)
T PTZ00372 141 GGVDNSPINAYNIAGQAFALFLKNQRTW 168 (413)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCccC
Confidence 4677788888888887776666555555
No 271
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=38.80 E-value=1.3e+02 Score=29.99 Aligned_cols=42 Identities=10% Similarity=0.022 Sum_probs=30.0
Q ss_pred CCCChhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHH
Q psy4448 242 KSRNEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKE 284 (487)
Q Consensus 242 ~~~n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~ 284 (487)
+....|.-.....+.+..|++.|+|+-+++... ++.-+.+.+
T Consensus 188 ~~~~~~~v~~a~~~v~~aa~~~G~~~g~~~~~~-~~~~~~~~~ 229 (256)
T PRK10558 188 GNASHPDVQKAIQHIFARAKAHGKPSGILAPVE-ADARRYLEW 229 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCceEEcCCCH-HHHHHHHHc
Confidence 344556777788889999999999998876553 445455443
No 272
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=38.71 E-value=2.9e+02 Score=29.63 Aligned_cols=36 Identities=8% Similarity=0.092 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecc--chHHHHHHHHHh
Q psy4448 250 IVYFRKQLDLSVTHKLPLFLHCRN--AKSDFIEIMKEY 285 (487)
Q Consensus 250 ~~~F~~ql~lA~~~~lPl~iH~r~--a~~~~l~il~~~ 285 (487)
.+.+++.++.|.+.|+||.+|+.. +...+++.+.+.
T Consensus 294 ~e~l~~~~~~a~~~g~~v~~Ha~gd~~i~~~l~~~~~~ 331 (479)
T cd01300 294 PEELEELVRAADEAGLQVAIHAIGDRAVDTVLDALEAA 331 (479)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHHH
Confidence 457889999999999999999973 344555555443
No 273
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=38.50 E-value=87 Score=30.47 Aligned_cols=108 Identities=14% Similarity=0.158 Sum_probs=66.6
Q ss_pred CHHHHHHHHHhcCCCEEEEECCCHHhHHHHHHHHhcC-CCeEEEeecCCCCCCCcCCCchhh-----HHHHHHHHHhcCC
Q psy4448 29 DIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSD-ERLYSTVGCHPTRCSEFENDPEGY-----LQSLDKIIKEGGK 102 (487)
Q Consensus 29 d~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~la~~~-~~v~~avGiHP~~~~~~~~~~~~~-----l~~L~~ll~~~~~ 102 (487)
++..+++++.+.|+..+++. |.-.....+..... +.+-..+|+ |+..... +.. ....++.++.
T Consensus 20 ~~~~~~~~a~~~~~~av~v~---p~~~~~~~~~~~~~~~~~~~vi~f-p~g~~~~----~~k~~~~~~~~ve~A~~~--- 88 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVT---PGYVKPAAELLAGSGVKVGLVIGF-PFGTSTT----EPKGYDQIVAEVEEAIRL--- 88 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEE---GGGHHHHHHHSTTSTSEEEEEEST-TTSSSTH----HHHTCEEEHHHHHHHHHT---
T ss_pred hHHHHHHHHHHhCCCEEEEC---HHHHHHHHHHhhccccccceEEEe-CCCCCcc----ccccccchHHHHHHHHHc---
Confidence 77889999999999987663 44444444443332 234455554 5433221 222 4566777764
Q ss_pred CEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEec
Q psy4448 103 KVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCR 148 (487)
Q Consensus 103 ~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r 148 (487)
.+.+| .+-+++.+......+.+.+-+++..+.|.++++||||.+.
T Consensus 89 GAd~v-d~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~ 133 (236)
T PF01791_consen 89 GADEV-DVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPY 133 (236)
T ss_dssp T-SEE-EEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEEC
T ss_pred CCcee-eeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 23334 2334332212234678899999999999999999999954
No 274
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=38.10 E-value=3.1e+02 Score=24.90 Aligned_cols=142 Identities=15% Similarity=0.129 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHhcCCCEEEEECCCHHhHHHHHHHHhc-CCCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEE
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQS-DERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVA 106 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~la~~-~~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vva 106 (487)
+....+++.+.++|+..+++.+ .-.+.+.+.... ...++..+| ++... .. .++..+..+...+. .+.+
T Consensus 13 ~~~~~~~~~~~~~gv~gi~~~g---~~i~~~~~~~~~~~~~v~~~v~-~~~~~-~~---~~~~~~~a~~a~~~---Gad~ 81 (201)
T cd00945 13 EDIAKLCDEAIEYGFAAVCVNP---GYVRLAADALAGSDVPVIVVVG-FPTGL-TT---TEVKVAEVEEAIDL---GADE 81 (201)
T ss_pred HHHHHHHHHHHHhCCcEEEECH---HHHHHHHHHhCCCCCeEEEEec-CCCCC-Cc---HHHHHHHHHHHHHc---CCCE
Confidence 3466788888899999887765 222223333222 112344444 23211 01 12334444444432 3344
Q ss_pred EEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC----chHHHHHH---HHHhCCCCCCcEEEEecCC---
Q psy4448 107 FGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN----AKSDFIEI---MKEYAPKLPRKGVIHSFDG--- 176 (487)
Q Consensus 107 IGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~----a~~d~l~i---Lk~~~~~~~~~~v~H~FsG--- 176 (487)
| .+...++.......+...+.|++..+.+ +.++|+++...- ..+.+.++ +++.+. ..+.-++|
T Consensus 82 i-~v~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~-----~~iK~~~~~~~ 154 (201)
T cd00945 82 I-DVVINIGSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVILETRGLKTADEIAKAARIAAEAGA-----DFIKTSTGFGG 154 (201)
T ss_pred E-EEeccHHHHhCCCHHHHHHHHHHHHHHh-cCCceEEEEEECCCCCCHHHHHHHHHHHHHhCC-----CEEEeCCCCCC
Confidence 4 3444443311011344445555555544 479999988763 22344443 222221 23444555
Q ss_pred ---CHHHHHHHHcC
Q psy4448 177 ---TPFQAVDSLKT 187 (487)
Q Consensus 177 ---~~~~a~~~l~~ 187 (487)
+.+.++++.+.
T Consensus 155 ~~~~~~~~~~i~~~ 168 (201)
T cd00945 155 GGATVEDVKLMKEA 168 (201)
T ss_pred CCCCHHHHHHHHHh
Confidence 66766665543
No 275
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=37.89 E-value=88 Score=38.06 Aligned_cols=56 Identities=16% Similarity=0.333 Sum_probs=36.1
Q ss_pred CcEEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC-CHHhHHHHHHHHhcC
Q psy4448 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT-NVEDSISSLKLAQSD 65 (487)
Q Consensus 1 m~~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~-~~~~~~~~~~la~~~ 65 (487)
|+++|.|+|....- ..| ...+++++++|.+.|+..+.+.-. +........+.+++.
T Consensus 3 m~fvdLHvHT~yS~----ldg-----~~~~~elv~~A~e~G~~avAITDH~~~~g~~~f~~~a~~~ 59 (1151)
T PRK06826 3 MSFVHLHVHTEYSL----LDG-----SARIKDLIKRAKELGMDSIAITDHGVMYGVVDFYKAAKKQ 59 (1151)
T ss_pred CcceeccccccCCh----hhh-----cCCHHHHHHHHHHCCCCEEEEecCCchHhHHHHHHHHHhC
Confidence 44999999986421 123 567999999999999987766522 223333334445443
No 276
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=37.46 E-value=2.6e+02 Score=29.37 Aligned_cols=62 Identities=13% Similarity=0.247 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCc------hHHHHHHHHHhCCCCC-CcEEEEecCC-CHHHHHHHHcC
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNA------KSDFIEIMKEYAPKLP-RKGVIHSFDG-TPFQAVDSLKT 187 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a------~~d~l~iLk~~~~~~~-~~~v~H~FsG-~~~~a~~~l~~ 187 (487)
.+.++..++.|.+.+.||||-.-.. .+.+..+++......+ .++.+|-=-| +.+..+++++.
T Consensus 26 ~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai~~ 95 (347)
T TIGR01521 26 MEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQRAIQL 95 (347)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHc
Confidence 4567888999999999999866442 2233334433321111 3577776443 78889999888
No 277
>PLN02765 pyruvate kinase
Probab=37.22 E-value=2.6e+02 Score=31.10 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHhcCCCEEEEECC--CHHhHHHHHHHHhcCCCeEEEeec-CCCCCCCcCCCchhhHHHHHHHHHhcCCC
Q psy4448 27 EPDIDHVLNRAWNAGLEKIIVTGT--NVEDSISSLKLAQSDERLYSTVGC-HPTRCSEFENDPEGYLQSLDKIIKEGGKK 103 (487)
Q Consensus 27 ~~d~~~vl~ra~~~GV~~ii~v~~--~~~~~~~~~~la~~~~~v~~avGi-HP~~~~~~~~~~~~~l~~L~~ll~~~~~~ 103 (487)
..|.+++..-+-..||+.+ ..++ +.++...+.++..+. |. ++.-+.... ..+.++.|++++..-..=
T Consensus 206 ekD~~di~~f~~~~~vD~i-a~SFVr~a~DI~~~r~~l~~~-------g~~~~~IiaKIE--~~~av~nl~eIi~~sDgI 275 (526)
T PLN02765 206 EKDKEVISTWGVPNKIDFL-SLSYTRHAEDVREAREFLSSL-------GLSQTQIFAKIE--NVEGLTHFDEILQEADGI 275 (526)
T ss_pred HhHHHHHHHHHHHcCCCEE-EECCCCCHHHHHHHHHHHHhc-------CCCCCcEEEEEC--CHHHHHHHHHHHHhcCEE
Confidence 3466555456678899854 4444 678888777776653 22 332222221 234577888888764334
Q ss_pred EEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEE
Q psy4448 104 VVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFL 145 (487)
Q Consensus 104 vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViI 145 (487)
.+|=|-.|+.... . .-...|+ +.+..|+++++|||.
T Consensus 276 MVARGDLGvEip~-e-~vp~~QK----~iI~~c~~~gKPVI~ 311 (526)
T PLN02765 276 ILSRGNLGIDLPP-E-KVFLFQK----AALYKCNMAGKPAVV 311 (526)
T ss_pred EEecCccccccCH-H-HhHHHHH----HHHHHHHHhCCCeEE
Confidence 6788888887532 1 1124565 567889999999985
No 278
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=36.95 E-value=2.7e+02 Score=28.34 Aligned_cols=61 Identities=10% Similarity=0.062 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhhCCCCEEEEecCc------hHHHHHHHHHhCCCCCCcEEEEecCC-CHHHHHHHHcC
Q psy4448 127 KYFRKQLDLSVTHKLPLFLHCRNA------KSDFIEIMKEYAPKLPRKGVIHSFDG-TPFQAVDSLKT 187 (487)
Q Consensus 127 ~vF~~qL~LA~el~lPViIH~r~a------~~d~l~iLk~~~~~~~~~~v~H~FsG-~~~~a~~~l~~ 187 (487)
+..+..++.|.+.+-||||-.-.. .+.+..+++........++.+|-=-| +.+..+++++.
T Consensus 29 e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLDH~~~~e~i~~ai~~ 96 (284)
T PRK12737 29 ETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLDHHEDLDDIKKKVRA 96 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHc
Confidence 556777777777777777655331 12233333322111113466665433 56778888877
No 279
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=36.52 E-value=5e+02 Score=26.81 Aligned_cols=160 Identities=15% Similarity=0.168 Sum_probs=86.3
Q ss_pred EEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCC------HHhHHHHHHHHhcCC-CeEEEeecCC
Q psy4448 4 IDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTN------VEDSISSLKLAQSDE-RLYSTVGCHP 76 (487)
Q Consensus 4 iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~------~~~~~~~~~la~~~~-~v~~avGiHP 76 (487)
+.+-.|||. ..+++. +.+|-++|.+.++.=|.. .+..+++.+++..+. .|=.=+|.=+
T Consensus 75 VPValHLDH--------------g~~~e~-i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vg 139 (307)
T PRK05835 75 IPVALHLDH--------------GTTFES-CEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLM 139 (307)
T ss_pred CeEEEECCC--------------CCCHHH-HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccC
Confidence 455678886 246654 467888899877665553 233345556666553 1222223221
Q ss_pred CCCCC---cC-CCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCC-CChHHHHHHHHHHHHHhhhCCCCEEEEecCch
Q psy4448 77 TRCSE---FE-NDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQY-CPVETQLKYFRKQLDLSVTHKLPLFLHCRNAK 151 (487)
Q Consensus 77 ~~~~~---~~-~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~-~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~ 151 (487)
..-.. .. +......++..+++++..-...|| -||==+..... .......+.++ ++++..+.|++||--...
T Consensus 140 g~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAv-aiGt~HG~Yk~~~~p~L~f~~L~---~I~~~~~iPLVLHGgSGi 215 (307)
T PRK05835 140 GIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAP-AIGTSHGAFKFKGEPKLDFERLQ---EVKRLTNIPLVLHGASAI 215 (307)
T ss_pred CccCCcccccccccCCCHHHHHHHHHhhCCCEEEE-ccCccccccCCCCCCccCHHHHH---HHHHHhCCCEEEeCCCCC
Confidence 11000 00 000122455667776532334444 24433311010 11133444444 467778999999998764
Q ss_pred -HHHHHHHHHhCCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 152 -SDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 152 -~d~l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
+++++.+.+++... =-.+.-+.++.++++++
T Consensus 216 p~e~~~~~~~~g~~~-----~~~~g~~~e~~~kai~~ 247 (307)
T PRK05835 216 PDDVRKSYLDAGGDL-----KGSKGVPFEFLQESVKG 247 (307)
T ss_pred chHHhhhhhhhcccc-----ccccCCCHHHHHHHHHc
Confidence 46888888776533 23567788899999988
No 280
>PLN02540 methylenetetrahydrofolate reductase
Probab=36.50 E-value=1.9e+02 Score=32.38 Aligned_cols=106 Identities=21% Similarity=0.239 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHhcCCCEEEEECCCHHh--------------HHHHHHHHhc-CCC-eEEEeecCCCCCCCcCC-----Cc
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTGTNVED--------------SISSLKLAQS-DER-LYSTVGCHPTRCSEFEN-----DP 86 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~~~~~~--------------~~~~~~la~~-~~~-v~~avGiHP~~~~~~~~-----~~ 86 (487)
..+++.|.+|.++||+.++++..|+.. ...+++..++ ++. .-.+++-+|..-.+... ..
T Consensus 73 ~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~ 152 (565)
T PLN02540 73 EKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATP 152 (565)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCC
Confidence 367788899999999999888766521 2233333333 443 44455556643221100 00
Q ss_pred hhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCC--CCEE
Q psy4448 87 EGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHK--LPLF 144 (487)
Q Consensus 87 ~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~--lPVi 144 (487)
.+....+..+.+ ++ +.|-||.- .+... ..+.|.+.++.+++.+ +||+
T Consensus 153 ~~~~~dl~~Lk~----Kv----dAGAdFiI-TQlfF--D~d~f~~f~~~~r~~Gi~vPIi 201 (565)
T PLN02540 153 EAYQKDLAYLKE----KV----DAGADLII-TQLFY--DTDIFLKFVNDCRQIGITCPIV 201 (565)
T ss_pred CChHHHHHHHHH----HH----HcCCCEEe-ecccc--CHHHHHHHHHHHHhcCCCCCEE
Confidence 111123333332 23 34788643 32222 3466778888888765 7766
No 281
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=36.47 E-value=4.7e+02 Score=26.50 Aligned_cols=40 Identities=10% Similarity=0.194 Sum_probs=27.7
Q ss_pred ChHHHHHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHh
Q psy4448 121 PVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEY 161 (487)
Q Consensus 121 ~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~ 161 (487)
+.+.++++++...+.+. -+.||+.|.-....+++++.+..
T Consensus 58 t~eEr~~~~~~~~~~~~-~~~pvi~gv~~~t~~~i~~~~~a 97 (303)
T PRK03620 58 TPDEYSQVVRAAVETTA-GRVPVIAGAGGGTAQAIEYAQAA 97 (303)
T ss_pred CHHHHHHHHHHHHHHhC-CCCcEEEecCCCHHHHHHHHHHH
Confidence 45778888888877664 36888888765566666666544
No 282
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=36.25 E-value=5.2e+02 Score=26.90 Aligned_cols=151 Identities=15% Similarity=0.120 Sum_probs=83.6
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEECCCH--------HhHH---HHHHHHhcCCC--eEEEeecCCCCCCCcCCCchhhHHH
Q psy4448 26 HEPDIDHVLNRAWNAGLEKIIVTGTNV--------EDSI---SSLKLAQSDER--LYSTVGCHPTRCSEFENDPEGYLQS 92 (487)
Q Consensus 26 ~~~d~~~vl~ra~~~GV~~ii~v~~~~--------~~~~---~~~~la~~~~~--v~~avGiHP~~~~~~~~~~~~~l~~ 92 (487)
-.+-++++++++++.||+.+|+...-| ..++ ++++..+..+. ....+.-||.+++ .+.+.
T Consensus 100 ~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~~~~~i~~I~~~~~~p~yI~-------a~a~~ 172 (320)
T COG0276 100 GPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELRGQPKISTIPDYYDEPLYIE-------ALADS 172 (320)
T ss_pred CCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcCCCCceEEecCccCChHHHH-------HHHHH
Confidence 367899999999999999998774422 2333 22222221122 2334444444432 33344
Q ss_pred HHHHHHhc--CCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCC-----EEEEecC--------chHHHHHH
Q psy4448 93 LDKIIKEG--GKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLP-----LFLHCRN--------AKSDFIEI 157 (487)
Q Consensus 93 L~~ll~~~--~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lP-----ViIH~r~--------a~~d~l~i 157 (487)
+++.+.+. .+.++..---||.....+. .-.-+.++.+.--.++.++++| +..-|+- ..+++++-
T Consensus 173 I~~~~~~~~~~~~~llfSaHglP~~~~~~-GDpY~~q~~~t~~li~e~lg~~~~~~~~~~QS~~G~~~WL~P~t~~~l~~ 251 (320)
T COG0276 173 IREKLAKHPRDDDVLLFSAHGLPKRYIDE-GDPYPQQCQETTRLIAEALGLPEEEYDLTFQSRFGPEPWLQPYTDDLLEE 251 (320)
T ss_pred HHHHHHhcCCCCeEEEEecCCCchhhhhc-CCchHHHHHHHHHHHHHHcCCCchheeEEeecCCCCCCCCCCCHHHHHHH
Confidence 55555543 1345566667777644332 2234666777777778888864 4455543 24566666
Q ss_pred HHHhCCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 158 MKEYAPKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 158 Lk~~~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
|.+.+. .++++=|.+-..+-++-+-++
T Consensus 252 L~~~g~---k~iiv~pigFvsDhlETL~Ei 278 (320)
T COG0276 252 LGEKGV---KKIIVVPIGFVSDHLETLYEI 278 (320)
T ss_pred HHhcCC---CeEEEECCchhhhhHHHHHHH
Confidence 655433 246666655444444444444
No 283
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=35.70 E-value=2.7e+02 Score=28.16 Aligned_cols=60 Identities=8% Similarity=0.201 Sum_probs=31.9
Q ss_pred HHHHHHHHhhhCCCCEEEEecC------c-hHHHHHHHHHhCCCCC-CcEEEEe-cCCCHHHHHHHHcC
Q psy4448 128 YFRKQLDLSVTHKLPLFLHCRN------A-KSDFIEIMKEYAPKLP-RKGVIHS-FDGTPFQAVDSLKT 187 (487)
Q Consensus 128 vF~~qL~LA~el~lPViIH~r~------a-~~d~l~iLk~~~~~~~-~~~v~H~-FsG~~~~a~~~l~~ 187 (487)
..+..++.|.+.+.||||-.-. . .+.+..+++....... .++++|- -..+.+.++++++.
T Consensus 28 ~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~ 96 (282)
T TIGR01859 28 WTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKA 96 (282)
T ss_pred HHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHc
Confidence 3667777777777777764422 1 2233333333211111 2467773 33467777777776
No 284
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=35.47 E-value=2.8e+02 Score=28.18 Aligned_cols=61 Identities=11% Similarity=0.151 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhhCCCCEEEEecCc------hHHHHHHHHHhCCCCCCcEEEEecCC-CHHHHHHHHcC
Q psy4448 127 KYFRKQLDLSVTHKLPLFLHCRNA------KSDFIEIMKEYAPKLPRKGVIHSFDG-TPFQAVDSLKT 187 (487)
Q Consensus 127 ~vF~~qL~LA~el~lPViIH~r~a------~~d~l~iLk~~~~~~~~~~v~H~FsG-~~~~a~~~l~~ 187 (487)
+..+..++.|.+.+.||||-.-.. .+.+..+++........++.+|-=-| +.+..+++++.
T Consensus 29 e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH~~~~e~i~~ai~~ 96 (284)
T PRK12857 29 EIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDHGTDFEQVMKCIRN 96 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHc
Confidence 556677777777777777655332 12233333322111113466655333 56777777776
No 285
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=35.33 E-value=4.1e+02 Score=25.44 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCCEEEEEeeCCCCCCCC--CCChHHHHHHHHHHHHHhhh--CCCCEEEEecC
Q psy4448 90 LQSLDKIIKEGGKKVVAFGEFGLDYDRVQ--YCPVETQLKYFRKQLDLSVT--HKLPLFLHCRN 149 (487)
Q Consensus 90 l~~L~~ll~~~~~~vvaIGEIGLD~~~~~--~~~~e~Q~~vF~~qL~LA~e--l~lPViIH~r~ 149 (487)
++..++++++ ..-.| .||....+.. ..+.+.+.+.+...++...+ .+.||+|=+.+
T Consensus 22 ~~~a~~~~~~---GAdiI-DIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~ 81 (210)
T PF00809_consen 22 VKRAREQVEA---GADII-DIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFN 81 (210)
T ss_dssp HHHHHHHHHT---T-SEE-EEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHh---cCCEE-EecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCC
Confidence 3344555554 33344 5555543311 12235566666777777764 67777777766
No 286
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=35.31 E-value=2.7e+02 Score=28.38 Aligned_cols=96 Identities=11% Similarity=0.163 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCc-------hHHHHHHHHHhCCCCC--CcEEEEecC-CCHHHHHHHHcCccchhHhh
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNA-------KSDFIEIMKEYAPKLP--RKGVIHSFD-GTPFQAVDSLKTKENLETVK 195 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a-------~~d~l~iLk~~~~~~~--~~~v~H~Fs-G~~~~a~~~l~~~~g~e~v~ 195 (487)
.+..+..++.|.+.+.||||-.-.. .+.+..+++....... .++.+|-=- .+.+.++++++. |+
T Consensus 28 ~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~--Gf---- 101 (286)
T PRK08610 28 LEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDA--GF---- 101 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHc--CC----
Confidence 3456788889999999999866332 2334444443221111 247776533 378888888888 54
Q ss_pred hcCCCceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccccCCC-ChhhhHHHHHHHHHHhhhCCCCE
Q psy4448 196 SIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSR-NEPANIVYFRKQLDLSVTHKLPL 267 (487)
Q Consensus 196 ~iP~driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-n~P~Q~~~F~~ql~lA~~~~lPl 267 (487)
.-+ +.+++. +...+++.-++-.++|...|.+|
T Consensus 102 ----tSV------------------------------------M~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 134 (286)
T PRK08610 102 ----TSV------------------------------------MIDASHSPFEENVATTKKVVEYAHEKGVSV 134 (286)
T ss_pred ----CEE------------------------------------EEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 111 122222 34567788888999999999886
No 287
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=35.28 E-value=35 Score=32.89 Aligned_cols=112 Identities=18% Similarity=0.254 Sum_probs=55.4
Q ss_pred HHHHHHHHhcCCCEEEEECCCHHhHHHHHHHHhcCCCeEEEeecC--CCCCCCcCCCchhhHHHHHHHHHh--------c
Q psy4448 31 DHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCH--PTRCSEFENDPEGYLQSLDKIIKE--------G 100 (487)
Q Consensus 31 ~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~la~~~~~v~~avGiH--P~~~~~~~~~~~~~l~~L~~ll~~--------~ 100 (487)
.+|+++|-++|+.-++ -.+..+....++.++++|..-+.++-.. |...+...+..-+.++.+.+++.+ .
T Consensus 82 ~~v~~~aL~~g~~~in-d~~~~~~~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~G 160 (210)
T PF00809_consen 82 PEVAEAALKAGADIIN-DISGFEDDPEMLPLAAEYGAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKAG 160 (210)
T ss_dssp HHHHHHHHHHTSSEEE-ETTTTSSSTTHHHHHHHHTSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcceEE-ecccccccchhhhhhhcCCCEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHcC
Confidence 4677777777887444 4444444677888888887633333333 433322110000223344444432 0
Q ss_pred --CCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhC-CCCEEE-EecCc
Q psy4448 101 --GKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTH-KLPLFL-HCRNA 150 (487)
Q Consensus 101 --~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el-~lPViI-H~r~a 150 (487)
..+++. -.|+.+. ...+...++++ .++.-+++ +.|+.+ ++|+.
T Consensus 161 i~~~~Ii~--DPgigf~----~~~~~~~~~l~-~i~~~~~~~~~p~l~~~srk~ 207 (210)
T PF00809_consen 161 IPRERIIL--DPGIGFG----KDPEQNLELLR-NIEELKELFGYPILVGGSRKS 207 (210)
T ss_dssp --GGGEEE--ETTTTSS----TTHHHHHHHHH-THHHHHTTSSSEBEEEETTGH
T ss_pred CCHHHEee--ccccCcC----CCHHHHHHHHH-HHHHHHHhCCCCEEEEEeCCc
Confidence 012222 3444441 22344555555 45555555 999665 77763
No 288
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=35.00 E-value=4.5e+02 Score=25.82 Aligned_cols=133 Identities=14% Similarity=0.083 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHhcCCCEEEEEC-----------CCHHhHHHHHHHHhcCCCeEEE--eecCCCCCCCcCCC--chhhHHH
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTG-----------TNVEDSISSLKLAQSDERLYST--VGCHPTRCSEFEND--PEGYLQS 92 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~-----------~~~~~~~~~~~la~~~~~v~~a--vGiHP~~~~~~~~~--~~~~l~~ 92 (487)
.++++.++.++++|.+.+=+.. .++.+...+.++++++.--.++ .+.|........+. .++.++.
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~ 100 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEI 100 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHH
Confidence 5788999999999998764431 1345555666666666533333 33443111000000 0112333
Q ss_pred HHHHHHh---cCCCEEEEEeeCCCCCC-CC-CCChHHHHHHHHHHHHHhhhCCCCEEEEecC-----chHHHHHHHHHhC
Q psy4448 93 LDKIIKE---GGKKVVAFGEFGLDYDR-VQ-YCPVETQLKYFRKQLDLSVTHKLPLFLHCRN-----AKSDFIEIMKEYA 162 (487)
Q Consensus 93 L~~ll~~---~~~~vvaIGEIGLD~~~-~~-~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~-----a~~d~l~iLk~~~ 162 (487)
+++.+.. -..+.+.++ |-+... .. ...++.-.+.|+..+++|+++|..+.||... ...++++++++.+
T Consensus 101 ~~~~i~~a~~lG~~~i~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~~~~~~~~~ll~~v~ 178 (283)
T PRK13209 101 MRKAIQLAQDLGIRVIQLA--GYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEIMDTPFMNSISKALGYAHYLN 178 (283)
T ss_pred HHHHHHHHHHcCCCEEEEC--CccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeecCCcccCCHHHHHHHHHHhC
Confidence 3333322 111233332 322111 00 0112333566788888888888888887653 3456777777664
No 289
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=34.82 E-value=46 Score=29.68 Aligned_cols=26 Identities=19% Similarity=0.485 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhhCCCCEEEEecCch
Q psy4448 123 ETQLKYFRKQLDLSVTHKLPLFLHCRNAK 151 (487)
Q Consensus 123 e~Q~~vF~~qL~LA~el~lPViIH~r~a~ 151 (487)
+.+...|.+.++ +.+.||.+||+...
T Consensus 72 ~~~v~~f~~~~~---~~~~pvL~HC~sG~ 97 (135)
T TIGR01244 72 PDDVETFRAAIG---AAEGPVLAYCRSGT 97 (135)
T ss_pred HHHHHHHHHHHH---hCCCCEEEEcCCCh
Confidence 567778888776 45789999998765
No 290
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=34.64 E-value=64 Score=33.21 Aligned_cols=136 Identities=18% Similarity=0.230 Sum_probs=82.0
Q ss_pred hhhhHHHHHHHHHHhhhCCCCEEEEeccch---HHHHHHHHHhCCCCC--------------------CCcEEEEeeCC-
Q psy4448 246 EPANIVYFRKQLDLSVTHKLPLFLHCRNAK---SDFIEIMKEYAPKLP--------------------RKGVIHSFDGT- 301 (487)
Q Consensus 246 ~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~---~~~l~il~~~~~~~~--------------------~~gv~hsfsG~- 301 (487)
.|..+++|++-...+++.|.||++|+-... -+.++||++...... ..|+|++|.+.
T Consensus 137 t~~E~k~lrAaa~A~~~TG~pI~~H~~~g~~~~~e~~~il~e~Gv~~~rvvigH~D~~~D~~y~~~la~~G~~l~~D~~g 216 (308)
T PF02126_consen 137 TPLEEKVLRAAARAHKETGAPISTHTGRGTRMGLEQLDILEEEGVDPSRVVIGHMDRNPDLDYHRELADRGVYLEFDTIG 216 (308)
T ss_dssp EHHHHHHHHHHHHHHHHHT-EEEEEESTTGTCHHHHHHHHHHTT--GGGEEETSGGGST-HHHHHHHHHTT-EEEETTTT
T ss_pred CHHHHHHHHHHHHHHHHhCCeEEEcCCCCCcCHHHHHHHHHHcCCChhHeEEeCCCCCCCHHHHHHHHhcCCEEEecCCc
Confidence 578889999999999999999999995444 799999998753221 37999999873
Q ss_pred ----cccc--cccccchhh-H----HHhhhCCCCceEeccCCCCCCCCCCCcchhhHhhhhhhhhhhccCCccCCCCCCc
Q psy4448 302 ----PFQA--VDSLKTKEN-L----ETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNE 370 (487)
Q Consensus 302 ----~~~~--~~~~k~~~~-~----e~v~~iPldrlLlETD~P~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~ 370 (487)
.... .+.+.+.+. . ++++.==.|||||=+|.-+.. .++.| . .++..
T Consensus 217 ~~~~g~~~~~~~~~~~d~~ri~~l~~L~~~Gy~~qIlLS~D~~~k~-----~~~~~--------------g---g~g~~- 273 (308)
T PF02126_consen 217 REFSGKDKNPRVGYPPDEERIELLKELIEEGYADQILLSHDIGRKS-----RLYRY--------------G---GGGYG- 273 (308)
T ss_dssp -B-TTTTTCHSCTTS-HHHHHHHHHHHHHTTTGGGEEE-HHHESEE-----GSSSC--------------C---HHHHT-
T ss_pred ccccCcccCccCCCCCHHHHHHHHHHHHHcCCcCcEEEeccccccc-----ccccc--------------C---CCCcc-
Confidence 1000 111223222 1 344455678999999984410 00000 0 00111
Q ss_pred cccH-HHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC
Q psy4448 371 PANI-VQILEIVAAVRGVEREKLGPIIHQNTLRLFF 405 (487)
Q Consensus 371 P~~l-~~v~~~iA~ikg~~~~~va~~~~~N~~rlf~ 405 (487)
-.+| ..++-.+ +-+|++.+++.+++.+|-+|+|.
T Consensus 274 ~~~i~~~fiP~L-~~~Gv~~~~i~~ilv~NP~r~lt 308 (308)
T PF02126_consen 274 YIYILTRFIPRL-KERGVSEEDIDKILVENPARILT 308 (308)
T ss_dssp TTHHHHTHHHHH-HHTTS-HHHHHHHHTHHHHHHHS
T ss_pred HHHHHHHHHHHH-HHcCCCHHHHHHHHHHCHHHHcC
Confidence 1122 2333333 34699999999999999999983
No 291
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=34.47 E-value=4.7e+02 Score=25.87 Aligned_cols=39 Identities=10% Similarity=0.223 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHHHHHhhhCCCCEEEEecC-chHHHHHHHHH
Q psy4448 121 PVETQLKYFRKQLDLSVTHKLPLFLHCRN-AKSDFIEIMKE 160 (487)
Q Consensus 121 ~~e~Q~~vF~~qL~LA~el~lPViIH~r~-a~~d~l~iLk~ 160 (487)
+.+..+++.+...+.+. -+.||+.|... ...+++++.+.
T Consensus 48 s~~Er~~l~~~~~~~~~-~~~~vi~gv~~~~~~~~i~~a~~ 87 (281)
T cd00408 48 TDEERKEVIEAVVEAVA-GRVPVIAGVGANSTREAIELARH 87 (281)
T ss_pred CHHHHHHHHHHHHHHhC-CCCeEEEecCCccHHHHHHHHHH
Confidence 45777888888777765 46888888865 34455555543
No 292
>PRK06189 allantoinase; Provisional
Probab=34.30 E-value=6.1e+02 Score=27.14 Aligned_cols=40 Identities=23% Similarity=0.411 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHHHHHhhhCCCCE-EEEecCchHHHHHHHHHhC
Q psy4448 121 PVETQLKYFRKQLDLSVTHKLPL-FLHCRNAKSDFIEIMKEYA 162 (487)
Q Consensus 121 ~~e~Q~~vF~~qL~LA~el~lPV-iIH~r~a~~d~l~iLk~~~ 162 (487)
+...+.....+.+.+|++.+.|| +.|. ...+.++++++.+
T Consensus 213 P~~~E~~~v~~~l~la~~~g~~~hi~Hi--St~~~~~~i~~~k 253 (451)
T PRK06189 213 PVVAELEAVQRALLYAQETGCPLHFVHI--SSGKAVALIAEAK 253 (451)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEEC--CCHHHHHHHHHHH
Confidence 34557778899999999999997 5666 3445666666543
No 293
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=33.82 E-value=5.1e+02 Score=26.13 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=36.2
Q ss_pred CCCEEEEecCc--hHHHHHHHHHhCCCCCCcEEEEecCCCHH----------HHHHHHcCccchhHhhhcCCCceeeccC
Q psy4448 140 KLPLFLHCRNA--KSDFIEIMKEYAPKLPRKGVIHSFDGTPF----------QAVDSLKTKENLETVKSIPEDRLLLETD 207 (487)
Q Consensus 140 ~lPViIH~r~a--~~d~l~iLk~~~~~~~~~~v~H~FsG~~~----------~a~~~l~~~~g~e~v~~iP~driLlETD 207 (487)
+.--+.|+... .++.++.+++.+. .+.+|-+++.. -++++++. |. ++.+.||
T Consensus 210 g~~~i~H~~~l~~~~~~~~~l~~~gi-----~v~~~P~sn~~l~~~~~~~~~p~~~l~~~--Gv---------~v~lgTD 273 (325)
T cd01320 210 GAERIGHGIRAIEDPELVKRLAERNI-----PLEVCPTSNVQTGAVKSLAEHPLRELLDA--GV---------KVTINTD 273 (325)
T ss_pred CCcccchhhccCccHHHHHHHHHcCC-----eEEECCCccccccccCCcccChHHHHHHC--CC---------EEEECCC
Confidence 33457899887 4568899987643 56677655431 23445555 43 6889999
Q ss_pred CCCC
Q psy4448 208 CPWC 211 (487)
Q Consensus 208 ~P~l 211 (487)
+|-.
T Consensus 274 ~~~~ 277 (325)
T cd01320 274 DPTV 277 (325)
T ss_pred CCcc
Confidence 9854
No 294
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=33.69 E-value=4.7e+02 Score=25.67 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHhcCCCEEEEEeeCCCC-CCCCCC---ChHHHHHHHHHHHHHhhhCCCCEEE
Q psy4448 88 GYLQSLDKIIKEGGKKVVAFGEFGLDY-DRVQYC---PVETQLKYFRKQLDLSVTHKLPLFL 145 (487)
Q Consensus 88 ~~l~~L~~ll~~~~~~vvaIGEIGLD~-~~~~~~---~~e~Q~~vF~~qL~LA~el~lPViI 145 (487)
...+.+.++++++.=.+.+++ ++... +....+ .++...+.+++.+++|.+++.+.+.
T Consensus 57 ~~~~~l~~~l~~~gl~i~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~ 117 (283)
T PRK13209 57 EQRLALVNALVETGFRVNSMC-LSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQ 117 (283)
T ss_pred HHHHHHHHHHHHcCCceeEEe-cccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 446788888877422233332 22211 111111 2445677899999999999999774
No 295
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=33.69 E-value=69 Score=31.88 Aligned_cols=42 Identities=5% Similarity=0.057 Sum_probs=31.9
Q ss_pred CCCChhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHH
Q psy4448 242 KSRNEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMK 283 (487)
Q Consensus 242 ~~~n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~ 283 (487)
+..+...+++-|...++-+.+.|.+|.|||+...+..=-++-
T Consensus 148 g~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~A 189 (241)
T PTZ00393 148 GDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLAS 189 (241)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 445556777888888887888899999999988877544443
No 296
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.20 E-value=5.8e+02 Score=27.26 Aligned_cols=51 Identities=18% Similarity=0.093 Sum_probs=36.1
Q ss_pred HHHHHHhhhCCCCEEEEecCchHHHHHHHHHhCCCCCCcEEEEecCCCHHHHHHHHc
Q psy4448 130 RKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLK 186 (487)
Q Consensus 130 ~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~ 186 (487)
++.++-|.+.++||-+|.-++. -+++..+.+. ..+-|...-+.+.+..+.+
T Consensus 223 ~~~l~~a~~~g~~v~~HA~~~~--g~~~A~~~g~----~s~~H~~~ld~~~~~~~a~ 273 (406)
T COG1228 223 RAVLAAALKAGIPVKAHAHGAD--GIKLAIRLGA----KSAEHGTLLDHETAALLAE 273 (406)
T ss_pred HHHHHHHHHCCCceEEEecccc--hHHHHHHhCc----ceehhhhhcCHhHHHHHhh
Confidence 7888889999999999988776 2233333432 4567777777777777777
No 297
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=32.89 E-value=6.9e+02 Score=27.35 Aligned_cols=161 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHhcCCCEEEEEC-----------CCHHhHHHHHHHHhcCCCeEEEeecCCCCCCCcCCCchhhHHHHHHH
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTG-----------TNVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKI 96 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~-----------~~~~~~~~~~~la~~~~~v~~avGiHP~~~~~~~~~~~~~l~~L~~l 96 (487)
.+.-.++....++|+. .|-++ .++..|+.+..+.+..|++....-......-.+..-.++.++.+-+.
T Consensus 25 ~dkl~Ia~~Ld~~Gv~-~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~~ 103 (467)
T PRK14041 25 EDMLPALEAFDRMGFY-SMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVKK 103 (467)
T ss_pred HHHHHHHHHHHHcCCC-EEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHHH
Q ss_pred HHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEE---------EEecCchHHHHHHHHHhCCCCCC
Q psy4448 97 IKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLF---------LHCRNAKSDFIEIMKEYAPKLPR 167 (487)
Q Consensus 97 l~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPVi---------IH~r~a~~d~l~iLk~~~~~~~~ 167 (487)
+.+ .|+|..++..+..+ .+-.+.-++.|++.++-|. .|+.+..-++.+-+.+.+.
T Consensus 104 A~~----------~Gvd~irif~~lnd--~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Ga---- 167 (467)
T PRK14041 104 VAE----------YGLDIIRIFDALND--IRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGV---- 167 (467)
T ss_pred HHH----------CCcCEEEEEEeCCH--HHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCC----
Q ss_pred cEEEEecC---CCHHHHHHHHcCccchhHhhhcCCCceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccccCCC
Q psy4448 168 KGVIHSFD---GTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSR 244 (487)
Q Consensus 168 ~~v~H~Fs---G~~~~a~~~l~~~~g~e~v~~iP~driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (487)
..|-=+=+ ..+..+.+++..
T Consensus 168 d~I~i~Dt~G~l~P~~v~~Lv~~--------------------------------------------------------- 190 (467)
T PRK14041 168 DSICIKDMAGLLTPKRAYELVKA--------------------------------------------------------- 190 (467)
T ss_pred CEEEECCccCCcCHHHHHHHHHH---------------------------------------------------------
Q ss_pred ChhhhHHHHHHHHHHhhhCCCCEEEEeccchH
Q psy4448 245 NEPANIVYFRKQLDLSVTHKLPLFLHCRNAKS 276 (487)
Q Consensus 245 n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~ 276 (487)
|-+++++||-+|+-+..+
T Consensus 191 --------------lk~~~~vpI~~H~Hnt~G 208 (467)
T PRK14041 191 --------------LKKKFGVPVEVHSHCTTG 208 (467)
T ss_pred --------------HHHhcCCceEEEecCCCC
No 298
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=32.80 E-value=4.6e+02 Score=27.00 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhCCCCEEEEeccchHHH
Q psy4448 250 IVYFRKQLDLSVTHKLPLFLHCRNAKSDF 278 (487)
Q Consensus 250 ~~~F~~ql~lA~~~~lPl~iH~r~a~~~~ 278 (487)
.+.|...+++|.++|+|+.+|+-...+..
T Consensus 193 ~~~l~~~~~~A~~~g~~v~~H~~e~~~~~ 221 (411)
T cd01298 193 DELLREVAELAREYGVPLHIHLAETEDEV 221 (411)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecCCHHHH
Confidence 35688899999999999999986554443
No 299
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=32.13 E-value=5.4e+02 Score=26.73 Aligned_cols=95 Identities=13% Similarity=0.014 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHhcCCCEEEEEC-------------C-CHHhHHHHHHHHhcCCCeEEEeecCCCCCCCcCCCchhhHHHH
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTG-------------T-NVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDPEGYLQSL 93 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~-------------~-~~~~~~~~~~la~~~~~v~~avGiHP~~~~~~~~~~~~~l~~L 93 (487)
++...+++.+.++||.. |-+| . ...+++.+..+.+..++...++-+.|.... .+.+
T Consensus 25 ~~~~~i~~~L~~aGv~~-IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~---------~~dl 94 (337)
T PRK08195 25 EQVRAIARALDAAGVPV-IEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGT---------VDDL 94 (337)
T ss_pred HHHHHHHHHHHHcCCCE-EEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCccc---------HHHH
Confidence 44556788889999974 4553 1 123455555554555555544444565432 2334
Q ss_pred HHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEE
Q psy4448 94 DKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFL 145 (487)
Q Consensus 94 ~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViI 145 (487)
+..... |.|..++.. ...+.......++.|++.++-|.+
T Consensus 95 ~~a~~~-----------gvd~iri~~--~~~e~~~~~~~i~~ak~~G~~v~~ 133 (337)
T PRK08195 95 KMAYDA-----------GVRVVRVAT--HCTEADVSEQHIGLARELGMDTVG 133 (337)
T ss_pred HHHHHc-----------CCCEEEEEE--ecchHHHHHHHHHHHHHCCCeEEE
Confidence 443322 222211100 011234567778888877776543
No 300
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=32.04 E-value=2e+02 Score=28.38 Aligned_cols=17 Identities=35% Similarity=0.473 Sum_probs=14.8
Q ss_pred hcCCCceeeccCCCCCC
Q psy4448 196 SIPEDRLLLETDCPWCE 212 (487)
Q Consensus 196 ~iP~driLlETD~P~l~ 212 (487)
.+..||||..||+|...
T Consensus 209 ~~g~dRlmfGSD~P~~~ 225 (263)
T cd01311 209 AAAPDRLVWGTDWPHPR 225 (263)
T ss_pred HhCCCcEEEeCCCCCCC
Confidence 44899999999999975
No 301
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=31.94 E-value=61 Score=28.87 Aligned_cols=27 Identities=22% Similarity=0.556 Sum_probs=21.5
Q ss_pred hhhhHHHHHHHHHHhhhCCCCEEEEeccch
Q psy4448 246 EPANIVYFRKQLDLSVTHKLPLFLHCRNAK 275 (487)
Q Consensus 246 ~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~ 275 (487)
.+.++..|.+.++ +...||++||+...
T Consensus 71 ~~~~v~~f~~~~~---~~~~pvL~HC~sG~ 97 (135)
T TIGR01244 71 TPDDVETFRAAIG---AAEGPVLAYCRSGT 97 (135)
T ss_pred CHHHHHHHHHHHH---hCCCCEEEEcCCCh
Confidence 6678888888886 56799999997655
No 302
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=31.43 E-value=5.3e+02 Score=29.16 Aligned_cols=168 Identities=15% Similarity=0.126 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHhcCCCEEEEECC----------CHHhHHHHHHHHhcCCCeEEEeecCCCCCCCcCCCchhhHHHH
Q psy4448 24 QKHEPDIDHVLNRAWNAGLEKIIVTGT----------NVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDPEGYLQSL 93 (487)
Q Consensus 24 ~~~~~d~~~vl~ra~~~GV~~ii~v~~----------~~~~~~~~~~la~~~~~v~~avGiHP~~~~~~~~~~~~~l~~L 93 (487)
+-...|...++..+.++|+..+=+.|. .-..|+++..+.+..|+.....-+--..+..+..-+++.++..
T Consensus 22 r~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~ 101 (596)
T PRK14042 22 RMRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAF 101 (596)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHH
Q ss_pred HHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEE---------EEecCchHHHHHHHHHhCCC
Q psy4448 94 DKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLF---------LHCRNAKSDFIEIMKEYAPK 164 (487)
Q Consensus 94 ~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPVi---------IH~r~a~~d~l~iLk~~~~~ 164 (487)
-+.+.+ .|+|.+|+... -...+.++..++.+++.|+-+. +|+.+..-++.+.+.+.+..
T Consensus 102 v~~a~~----------~Gidv~Rifd~--lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad 169 (596)
T PRK14042 102 VKLAVN----------NGVDVFRVFDA--LNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCD 169 (596)
T ss_pred HHHHHH----------cCCCEEEEccc--CcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q ss_pred CCCcEEEEecC-CCHHHHHHHHcCccchhHhhhcCCCceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccccCC
Q psy4448 165 LPRKGVIHSFD-GTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKS 243 (487)
Q Consensus 165 ~~~~~v~H~Fs-G~~~~a~~~l~~~~g~e~v~~iP~driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (487)
. -.+--..+ ..+..+.+++..
T Consensus 170 ~--I~IkDtaG~l~P~~v~~lv~a-------------------------------------------------------- 191 (596)
T PRK14042 170 S--IAIKDMAGLLTPTVTVELYAG-------------------------------------------------------- 191 (596)
T ss_pred E--EEeCCcccCCCHHHHHHHHHH--------------------------------------------------------
Q ss_pred CChhhhHHHHHHHHHHhhhCCCCEEEEeccchH
Q psy4448 244 RNEPANIVYFRKQLDLSVTHKLPLFLHCRNAKS 276 (487)
Q Consensus 244 ~n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~ 276 (487)
|-+++++||-+|+-+..+
T Consensus 192 ---------------lk~~~~ipi~~H~Hnt~G 209 (596)
T PRK14042 192 ---------------LKQATGLPVHLHSHSTSG 209 (596)
T ss_pred ---------------HHhhcCCEEEEEeCCCCC
No 303
>PLN02461 Probable pyruvate kinase
Probab=31.39 E-value=3.7e+02 Score=29.76 Aligned_cols=104 Identities=16% Similarity=0.132 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHhcCCCEEEEECC--CHHhHHHHHHHHhcCCCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEE
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTGT--NVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVV 105 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~~--~~~~~~~~~~la~~~~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vv 105 (487)
.|.+++++-+.+.||+.+. .++ +.++...+.++.... |-|+.-+.... ..+.++.|.+.+..-..=.+
T Consensus 194 kD~~di~~f~~~~~vD~ia-~SFVr~a~DV~~~r~~l~~~-------~~~~~IiAKIE--~~~av~nl~eIi~~sDgIMV 263 (511)
T PLN02461 194 KDKEDILQWGVPNKIDFIA-LSFVRKGSDLVEVRKVLGEH-------AKSILLISKVE--NQEGLDNFDDILAESDAFMV 263 (511)
T ss_pred HHHHHHHHHHhhcCCCEEE-ECCCCCHHHHHHHHHHHHhC-------CCCCCEEEEEC--CHHHHHHHHHHHHhcCEEEE
Confidence 4666655566788998554 444 567777777666532 22443333331 23557788888876434467
Q ss_pred EEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEe
Q psy4448 106 AFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHC 147 (487)
Q Consensus 106 aIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~ 147 (487)
|=|-.|+.... .. -...|+ +.++.|++.++||++=+
T Consensus 264 ARGDLGvEip~-e~-vp~~Qk----~II~~c~~~gkPVIvAT 299 (511)
T PLN02461 264 ARGDLGMEIPI-EK-IFLAQK----MMIYKCNLAGKPVVTAT 299 (511)
T ss_pred eccccccccCH-HH-hHHHHH----HHHHHHHHcCCCeEEee
Confidence 88988887532 11 123343 56788999999999755
No 304
>KOG0564|consensus
Probab=31.11 E-value=2.2e+02 Score=31.29 Aligned_cols=117 Identities=19% Similarity=0.240 Sum_probs=60.9
Q ss_pred EEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECCCH-----------HhHHHHHHH----HhcCCCe
Q psy4448 4 IDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNV-----------EDSISSLKL----AQSDERL 68 (487)
Q Consensus 4 iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~~~-----------~~~~~~~~l----a~~~~~v 68 (487)
+++=.||+.... ....++..|++|++.|++.|+..-.|| ..|+-+++| .++|+.
T Consensus 78 v~t~mHlTCtn~----------~~~~Id~aLe~a~~~GirNILALRGDpP~g~d~~~~~e~gF~yA~DLVr~Irs~YGD- 146 (590)
T KOG0564|consen 78 LETCMHLTCTNM----------PKEMIDKALEQAKALGIRNILALRGDPPIGQDKWVEEEGGFRYAVDLVRYIRSKYGD- 146 (590)
T ss_pred ccceeeeeccCc----------cHHHHHHHHHHHHHhCchhhhhhcCCCCCCccccccccCCchhHHHHHHHHHHHhCC-
Confidence 455567765432 145678889999999998888765442 123334444 345655
Q ss_pred EEEeec--CCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhC--CCCEE
Q psy4448 69 YSTVGC--HPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTH--KLPLF 144 (487)
Q Consensus 69 ~~avGi--HP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el--~lPVi 144 (487)
|.++|+ .|.--.+.. ..+.+..|.-+-. ++ +.|-||-- .+ .--.-+.|.+....+++. +.|++
T Consensus 147 yF~IgVAgYPEghpe~~--~~~~~~Dl~yLk~----Kv----daGaDFIi-TQ--lFYd~e~flkfv~~cR~~gi~~PIv 213 (590)
T KOG0564|consen 147 YFCIGVAGYPEGHPEAP--SHDYLADLPYLKE----KV----DAGADFII-TQ--LFYDVETFLKFVKDCRAAGINVPIV 213 (590)
T ss_pred eEEEEeccCCCCCcCCc--ccchhhhhHHHHH----hh----cccchhhh-hh--hhcCHHHHHHHHHHHHHhCCCCCcc
Confidence 445554 232111110 0112333433332 22 56778732 11 112346677777777775 45665
No 305
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=30.99 E-value=2e+02 Score=29.86 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCCEEEEECCCHHh
Q psy4448 32 HVLNRAWNAGLEKIIVTGTNVED 54 (487)
Q Consensus 32 ~vl~ra~~~GV~~ii~v~~~~~~ 54 (487)
++|+.|.++|.+.+=.-...+++
T Consensus 20 ~lI~~A~~aGadaVKfQt~~~~~ 42 (329)
T TIGR03569 20 KLVDAAAEAGADAVKFQTFKAED 42 (329)
T ss_pred HHHHHHHHhCCCEEEeeeCCHHH
Confidence 58889999998855444433333
No 306
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=30.90 E-value=88 Score=26.28 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=44.3
Q ss_pred EEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHhCC
Q psy4448 107 FGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAP 163 (487)
Q Consensus 107 IGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~~~ 163 (487)
-||++.-|.-.++..+-.-..+...+++-..+.|.|+-.|..+..+...++++..+.
T Consensus 19 tge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~lg~ 75 (89)
T PF08444_consen 19 TGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSKSLGF 75 (89)
T ss_pred cccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHHHCCC
Confidence 578887763223333445677888888899999999999999999999999988754
No 307
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=30.67 E-value=5.1e+02 Score=26.00 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=33.2
Q ss_pred CHHHHHHHHHhcCCCEEEEECCCHHhHHHHHHHHhcCC
Q psy4448 29 DIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDE 66 (487)
Q Consensus 29 d~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~la~~~~ 66 (487)
..+..++++.++|++++|++-..+++.....+.++++.
T Consensus 103 G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~g 140 (259)
T PF00290_consen 103 GIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHG 140 (259)
T ss_dssp -HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT
T ss_pred chHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcC
Confidence 56788999999999999999998999999988888775
No 308
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=30.64 E-value=5.3e+02 Score=25.36 Aligned_cols=103 Identities=9% Similarity=-0.003 Sum_probs=53.6
Q ss_pred CHHHHHHHHHhcCCCEEEE--ECCCHHhHHHHHHHHhcCCCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEE
Q psy4448 29 DIDHVLNRAWNAGLEKIIV--TGTNVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVA 106 (487)
Q Consensus 29 d~~~vl~ra~~~GV~~ii~--v~~~~~~~~~~~~la~~~~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vva 106 (487)
+.-++++...++||..+=+ +.....+|+.+..+.+..++.... ++.+.. .+.++..+.. +
T Consensus 21 ~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~~~~~~-~~~r~~-----------~~~v~~a~~~------g 82 (259)
T cd07939 21 EKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVALGLPARLI-VWCRAV-----------KEDIEAALRC------G 82 (259)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcCCCCEEE-EeccCC-----------HHHHHHHHhC------C
Confidence 4446778888999986533 334567777777776644443322 222110 1223333322 1
Q ss_pred EEeeCCCCCCCC--------CCChHHHHHHHHHHHHHhhhCCCCEEEEecCc
Q psy4448 107 FGEFGLDYDRVQ--------YCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA 150 (487)
Q Consensus 107 IGEIGLD~~~~~--------~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a 150 (487)
+..|.+=... . ..+.+.-.+.+...++.|++.++.|.+.+.++
T Consensus 83 ~~~i~i~~~~-s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~ 133 (259)
T cd07939 83 VTAVHISIPV-SDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDA 133 (259)
T ss_pred cCEEEEEEec-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccC
Confidence 1222221110 0 01123334667788888888888888777654
No 309
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=30.49 E-value=91 Score=26.96 Aligned_cols=37 Identities=11% Similarity=0.043 Sum_probs=28.1
Q ss_pred ChhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHH
Q psy4448 245 NEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEI 281 (487)
Q Consensus 245 n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~i 281 (487)
+.+.+...+-..++.+.+-+.||+|||+...+..--+
T Consensus 62 ~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~ 98 (139)
T cd00127 62 DISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATL 98 (139)
T ss_pred ChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHH
Confidence 4455667777888888888999999998887664433
No 310
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=30.48 E-value=1.4e+02 Score=30.29 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHhCCCCCCcEEEEe-cCCCHHHHHHHHc
Q psy4448 125 QLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHS-FDGTPFQAVDSLK 186 (487)
Q Consensus 125 Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~~~~~~~~~v~H~-FsG~~~~a~~~l~ 186 (487)
-...+++.++-.++.+.|+++|+-+.....++.+.+.+.. ++|+ ++-++..+++.+.
T Consensus 206 ~~p~~k~i~~~i~~~g~~~~lH~cG~~~~~~~~l~~~~~d-----~~~~d~~~dl~~~~~~~g 263 (330)
T cd03465 206 SLPYLKKVFDAIKALGGPVIHHNCGDTAPILELMADLGAD-----VFSIDVTVDLAEAKKKVG 263 (330)
T ss_pred hhHHHHHHHHHHHHcCCceEEEECCCchhHHHHHHHhCCC-----eEeecccCCHHHHHHHhC
Confidence 3555688888888889999999999888899999887642 3443 2237777777654
No 311
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=30.47 E-value=1.2e+02 Score=37.94 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=38.6
Q ss_pred cEEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC-CHHhHHHHHHHHhcC
Q psy4448 2 KYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT-NVEDSISSLKLAQSD 65 (487)
Q Consensus 2 ~~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~-~~~~~~~~~~la~~~ 65 (487)
+.||.|||...... .| ..++++++++|.+.|+..+.+.-. +...+..+.+.++++
T Consensus 333 KrvdLH~HT~~S~~----Dg-----~~~~~elv~~A~~~G~~aIAITDH~~v~~~p~a~~~~k~~ 388 (1437)
T PRK00448 333 KRVELHLHTKMSTM----DA-----IPSVSELVKRAAKWGHKAIAITDHGVVQAFPEAYNAAKKA 388 (1437)
T ss_pred ceEEecccccCccc----cc-----CCCHHHHHHHHHHCCCCEEEEecCCCCcCHHHHHHHHHhc
Confidence 57999999876432 13 578999999999999987766522 345555566666554
No 312
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=30.15 E-value=6e+02 Score=25.85 Aligned_cols=21 Identities=24% Similarity=0.083 Sum_probs=17.1
Q ss_pred CcEEEEecCCCH-HHHHHHHcC
Q psy4448 167 RKGVIHSFDGTP-FQAVDSLKT 187 (487)
Q Consensus 167 ~~~v~H~FsG~~-~~a~~~l~~ 187 (487)
.+.|+|+-||.+ +.++++++.
T Consensus 200 vPLVlHGgSG~~~e~~~~ai~~ 221 (283)
T PRK07998 200 VPLVIHGGSGIPPEILRSFVNY 221 (283)
T ss_pred CCEEEeCCCCCCHHHHHHHHHc
Confidence 468999999876 677788887
No 313
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=30.14 E-value=69 Score=33.01 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhhhCCCCEEEEeccchHH-------HHHHHHHhCCCCCCCcEEEEee
Q psy4448 249 NIVYFRKQLDLSVTHKLPLFLHCRNAKSD-------FIEIMKEYAPKLPRKGVIHSFD 299 (487)
Q Consensus 249 Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~-------~l~il~~~~~~~~~~gv~hsfs 299 (487)
..+.|++.+++|+++|+|+.+|+..+.++ .++.+.+.... +...+-|+..
T Consensus 187 s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~g~~-~~~~i~H~~~ 243 (398)
T cd01293 187 GEESLDTLFELAQEHGLDIDLHLDETDDPGSRTLEELAEEAERRGMQ-GRVTCSHATA 243 (398)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEeCCCCCcchhHHHHHHHHHHHhCCC-CCEEeeecch
Confidence 35789999999999999999999876543 45555554321 2234455554
No 314
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=30.14 E-value=4.3e+02 Score=26.19 Aligned_cols=113 Identities=12% Similarity=0.137 Sum_probs=63.0
Q ss_pred HHHHHHHhcCCCEEEEECC-CHHhHHHHHHHHhcCCCeEEEee-------cC--CCCCCCcCC--------CchhhHHHH
Q psy4448 32 HVLNRAWNAGLEKIIVTGT-NVEDSISSLKLAQSDERLYSTVG-------CH--PTRCSEFEN--------DPEGYLQSL 93 (487)
Q Consensus 32 ~vl~ra~~~GV~~ii~v~~-~~~~~~~~~~la~~~~~v~~avG-------iH--P~~~~~~~~--------~~~~~l~~L 93 (487)
..++++-+.|...++++-+ +.++.+.+++.++-.|.=.-++| +. +.+.....+ +..+.++.+
T Consensus 75 ~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~~av~n~ 154 (249)
T TIGR03239 75 VIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQKGVDNV 154 (249)
T ss_pred HHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECCHHHHHhH
Confidence 4568888899998888755 57777777777654332111111 11 111111000 112345667
Q ss_pred HHHHHhcCCC--EEEEEe------eCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCc
Q psy4448 94 DKIIKEGGKK--VVAFGE------FGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNA 150 (487)
Q Consensus 94 ~~ll~~~~~~--vvaIGE------IGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a 150 (487)
++++.. +. .+.||- +|... ......-..+..+.+..|++.++|+-+++...
T Consensus 155 ~eI~av--~gvd~l~iG~~DLs~slG~~~----~~~~~~v~~a~~~v~~aa~a~G~~~g~~~~~~ 213 (249)
T TIGR03239 155 DEIAAV--DGVDGIFVGPSDLAAALGHLG----NPNHPDVQKAIRHIFDRAAAHGKPCGILAPVE 213 (249)
T ss_pred HHHhCC--CCCCEEEEChHHHHHHcCCCC----CCCCHHHHHHHHHHHHHHHHcCCCEEEcCCCH
Confidence 777754 34 344553 22221 11223345577888999999999988877554
No 315
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=29.78 E-value=97 Score=32.48 Aligned_cols=44 Identities=23% Similarity=0.381 Sum_probs=39.4
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHhC
Q psy4448 119 YCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYA 162 (487)
Q Consensus 119 ~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~~ 162 (487)
....+.|...+++.|++|++.|.|+++=....+....+++++.+
T Consensus 244 f~~s~~q~~F~e~~L~~ake~~I~~vl~~P~V~~~~~~~~~~~~ 287 (345)
T PF07611_consen 244 FTFSETQFFFLEKFLKLAKENGIPVVLWWPKVSPPYEKLYKELK 287 (345)
T ss_pred CCCChhHHHHHHHHHHHHHHcCCcEEEEEeccCHHHHHHHHhhc
Confidence 44568999999999999999999999999999999988888764
No 316
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=29.69 E-value=3.9e+02 Score=27.21 Aligned_cols=96 Identities=13% Similarity=0.174 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCc-------hHHHHHHHHHhCCCC--CCcEEEEecCC-CHHHHHHHHcCccchhHhh
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNA-------KSDFIEIMKEYAPKL--PRKGVIHSFDG-TPFQAVDSLKTKENLETVK 195 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a-------~~d~l~iLk~~~~~~--~~~~v~H~FsG-~~~~a~~~l~~~~g~e~v~ 195 (487)
.+..+..++.|.+.+-||||-.-.. .+.+..+++...... ++++.+|-=-| +.+..+++++. |+.
T Consensus 28 ~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~--Gft--- 102 (285)
T PRK07709 28 LEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDA--GFT--- 102 (285)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHc--CCC---
Confidence 3456777888888888888765331 123333333322111 12477776444 67888888887 440
Q ss_pred hcCCCceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccccCCC-ChhhhHHHHHHHHHHhhhCCCCE
Q psy4448 196 SIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSR-NEPANIVYFRKQLDLSVTHKLPL 267 (487)
Q Consensus 196 ~iP~driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-n~P~Q~~~F~~ql~lA~~~~lPl 267 (487)
- .+.|++. +...++..-++-.++|...|.+|
T Consensus 103 -----S------------------------------------VM~DgS~lp~eeNi~~Trevv~~Ah~~gv~V 134 (285)
T PRK07709 103 -----S------------------------------------VMIDASHHPFEENVETTKKVVEYAHARNVSV 134 (285)
T ss_pred -----E------------------------------------EEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 0 1122222 44567788888999999999886
No 317
>PTZ00300 pyruvate kinase; Provisional
Probab=29.68 E-value=3e+02 Score=30.03 Aligned_cols=104 Identities=17% Similarity=0.167 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHhcCCCEEEEECC-CHHhHHHHHHHHhcCCCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEE
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTGT-NVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVA 106 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~~-~~~~~~~~~~la~~~~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vva 106 (487)
.|... ++.+-+.|++.+.+.-+ +.++.+.+.+++... |-++.-+.... ..+.++.|++++..-..=.+|
T Consensus 148 kD~~d-I~~ald~gvd~I~~SfVrsaeDv~~vr~~l~~~-------~~~~~IiaKIE--t~eav~nldeI~~~~DgImVa 217 (454)
T PTZ00300 148 KDCAD-LQFGVEQGVDMIFASFIRSAEQVGEVRKALGAK-------GGDIMIICKIE--NHQGVQNIDSIIEESDGIMVA 217 (454)
T ss_pred hhHHH-HHHHHHCCCCEEEECCCCCHHHHHHHHHHHHhc-------CCCceEEEEEC--CHHHHHhHHHHHHhCCEEEEe
Confidence 45544 57888999997765443 678888887777442 22332222221 234577888888652122455
Q ss_pred EEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEe
Q psy4448 107 FGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHC 147 (487)
Q Consensus 107 IGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~ 147 (487)
=|-.|+.... .+.. .+-++.++.|++.++|+++=+
T Consensus 218 RGDLgvei~~-----e~vp-~~Qk~Ii~~~~~~gkpvI~AT 252 (454)
T PTZ00300 218 RGDLGVEIPA-----EKVV-VAQKILISKCNVAGKPVICAT 252 (454)
T ss_pred cchhhhhcCh-----HHHH-HHHHHHHHHHHHcCCCEEEEC
Confidence 5666666532 1222 355567899999999999855
No 318
>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []. The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....
Probab=29.51 E-value=31 Score=34.44 Aligned_cols=21 Identities=10% Similarity=0.059 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCC
Q psy4448 387 VEREKLGPIIHQNTLRLFFPH 407 (487)
Q Consensus 387 ~~~~~va~~~~~N~~rlf~~~ 407 (487)
++++++.+..+.|.-+.|++.
T Consensus 295 ~~~~~~l~~aT~n~Ak~lg~~ 315 (333)
T PF01979_consen 295 ISPEEALKMATINPAKILGLD 315 (333)
T ss_dssp SHHHHHHHHHTHHHHHHTTST
T ss_pred ccccccccccchhHHHHcCCC
Confidence 999999999999999999994
No 319
>PRK06739 pyruvate kinase; Validated
Probab=29.18 E-value=4.1e+02 Score=27.98 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHhcCCCEEEEECC--CHHhHHHHHHHHhcCCCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEE
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTGT--NVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVV 105 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~~--~~~~~~~~~~la~~~~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vv 105 (487)
.|.++ ++-+.+.|++.+. .++ +.++...+.++.+++.. -++.-+.... ....++.|.+++..-..=.+
T Consensus 166 kD~~d-i~f~~~~~vD~ia-~SFVr~~~Dv~~~r~~l~~~g~------~~~~IiaKIE--~~~av~nl~eI~~~sDgimV 235 (352)
T PRK06739 166 KDKKD-IQFLLEEDVDFIA-CSFVRKPSHIKEIRDFIQQYKE------TSPNLIAKIE--TMEAIENFQDICKEADGIMI 235 (352)
T ss_pred HHHHH-HHHHHHcCCCEEE-ECCCCCHHHHHHHHHHHHHcCC------CCCcEEEEEC--CHHHHHHHHHHHHhcCEEEE
Confidence 35544 5677788998554 343 67777777777665421 0111112221 23456778888876433467
Q ss_pred EEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEe
Q psy4448 106 AFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHC 147 (487)
Q Consensus 106 aIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~ 147 (487)
|=|-.|+.... . .-...|+ +.+..|+++++||++=+
T Consensus 236 ARGDLgve~~~-e-~vp~~Qk----~Ii~~c~~~gkPvIvAT 271 (352)
T PRK06739 236 ARGDLGVELPY-Q-FIPLLQK----MMIQECNRTNTYVITAT 271 (352)
T ss_pred ECcccccccCH-H-HHHHHHH----HHHHHHHHhCCCEEEEc
Confidence 88889988632 1 1123454 56788999999999865
No 320
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=29.12 E-value=4.8e+02 Score=26.87 Aligned_cols=56 Identities=14% Similarity=0.051 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHhCCCCCCcEEEEecCCCHHHHHHHH
Q psy4448 127 KYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSL 185 (487)
Q Consensus 127 ~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l 185 (487)
..+...|+....++.+|.++......++..+|++.....+..+|+||. .+.+..++
T Consensus 148 ~~L~~~l~~~~~~~~~i~~~~~~~~~d~~~~L~~ik~~~~~~iVv~~~---~~~a~~il 203 (333)
T cd06394 148 LRLEELLRQFLISKETLSVRMLDDSRDPTPLLKEIRDDKTATIIIDAN---ASMSHTIL 203 (333)
T ss_pred HHHHHHHHhhcccCCceeeEEccCcccHHHHHHHHHhcCCCEEEEECC---hHHHHHHH
Confidence 334444555555677777877655556777776654433346889984 44444444
No 321
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=29.06 E-value=3.8e+02 Score=27.14 Aligned_cols=61 Identities=11% Similarity=0.168 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhhCCCCEEEEecCc------hHHHHHHHHHhCCCCCCcEEEEecCC-CHHHHHHHHcC
Q psy4448 127 KYFRKQLDLSVTHKLPLFLHCRNA------KSDFIEIMKEYAPKLPRKGVIHSFDG-TPFQAVDSLKT 187 (487)
Q Consensus 127 ~vF~~qL~LA~el~lPViIH~r~a------~~d~l~iLk~~~~~~~~~~v~H~FsG-~~~~a~~~l~~ 187 (487)
+..+..++.|.+.+.||||-.-.. .+.+..+++........++.+|-=-| +.+.+.++++.
T Consensus 24 e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~ 91 (276)
T cd00947 24 ETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRA 91 (276)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHh
Confidence 456677777888888877755432 12344444332211113466665433 56777777776
No 322
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=28.90 E-value=4.3e+02 Score=26.81 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHhhhCCCCE
Q psy4448 247 PANIVYFRKQLDLSVTHKLPL 267 (487)
Q Consensus 247 P~Q~~~F~~ql~lA~~~~lPl 267 (487)
..+++.-++-.++|+++|.||
T Consensus 111 ~eni~~t~~v~~~a~~~gv~v 131 (281)
T PRK06806 111 EENIQKTKEIVELAKQYGATV 131 (281)
T ss_pred HHHHHHHHHHHHHHHHcCCeE
Confidence 345566667778888888886
No 323
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=28.89 E-value=1.3e+02 Score=29.44 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=38.8
Q ss_pred hCCCCEEEEecCchHHHHHHHHHhCCCCCCcEEEEecCCCHH------HHHHHHcCccchhHhhhcCCCceeeccCCCC
Q psy4448 138 THKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPF------QAVDSLKTKENLETVKSIPEDRLLLETDCPW 210 (487)
Q Consensus 138 el~lPViIH~r~a~~d~l~iLk~~~~~~~~~~v~H~FsG~~~------~a~~~l~~~~g~e~v~~iP~driLlETD~P~ 210 (487)
+.+..++.|+....++.+++|++.+. .+.||-+.+.. -++++++. |. ++.+.||++-
T Consensus 162 ~~~~~~i~H~~~l~~~~~~~la~~g~-----~v~~~P~sn~~l~~g~~p~~~l~~~--Gv---------~v~lGtD~~~ 224 (263)
T cd01305 162 DLEPDLLVHGTHLTDEDLELVRENGV-----PVVLCPRSNLYFGVGIPPVAELLKL--GI---------KVLLGTDNVM 224 (263)
T ss_pred hCCCCEEEEcCCCCHHHHHHHHHcCC-----cEEEChhhHHHhCCCCCCHHHHHHC--CC---------cEEEECCCCc
Confidence 33556789999999999999998753 58888644332 12334444 32 6889999864
No 324
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=28.88 E-value=1.4e+02 Score=27.73 Aligned_cols=43 Identities=16% Similarity=0.414 Sum_probs=34.7
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEECCCHHhHHHHHHHHhcC
Q psy4448 23 NQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSD 65 (487)
Q Consensus 23 ~~~~~~d~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~la~~~ 65 (487)
+++.+..++-.++||.+.|+..+++.+++-.+..+++++.+..
T Consensus 9 ~eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~ 51 (186)
T COG1751 9 KENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGD 51 (186)
T ss_pred ccchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccC
Confidence 4444556667789999999999999998888888889888754
No 325
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=28.53 E-value=84 Score=31.79 Aligned_cols=131 Identities=17% Similarity=0.161 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHhhhCCCCEEEEeccchHHHHH----HHHHhCCCCCCCcEEEEeeCCccccc------ccccchhh-HH
Q psy4448 248 ANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIE----IMKEYAPKLPRKGVIHSFDGTPFQAV------DSLKTKEN-LE 316 (487)
Q Consensus 248 ~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~----il~~~~~~~~~~gv~hsfsG~~~~~~------~~~k~~~~-~e 316 (487)
.--++++.-+++|++.+.||.+|.-+...+.++ +.++..-+ +.+.|.|=-++...... ...-+.++ .+
T Consensus 142 ~~n~vl~~a~elA~dvdc~vqLHtes~~~~~~~~i~~~ak~~G~~-~~~VVkHha~p~v~~~~~~Gi~pSV~asr~~v~~ 220 (285)
T COG1831 142 ASNEVLEYAMELAKDVDCAVQLHTESLDEETYEEIAEMAKEAGIK-PYRVVKHHAPPLVLKCEEVGIFPSVPASRKNVED 220 (285)
T ss_pred HHHHHHHHHHHHhhcCCCcEEEecCCCChHHHHHHHHHHHHhCCC-cceeEeecCCccchhhhhcCcCCcccccHHHHHH
Confidence 445788999999999999999999777665444 44544321 12233333222110000 00011112 23
Q ss_pred HhhhCCCCceEeccCCCCCCCCCCCcchhhHhhhhhhhhhhccCCccCCCCCCccccHHHHHHHHHHhhCCCHHHHHHHH
Q psy4448 317 TVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPII 396 (487)
Q Consensus 317 ~v~~iPldrlLlETD~P~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~P~~l~~v~~~iA~ikg~~~~~va~~~ 396 (487)
.++. -.|.|+|||-=+-..+| |.--.|..++.-++.|.+--..+.+.+-++-
T Consensus 221 a~~~--g~~FmmETDyIDDp~Rp--------------------------gavL~PktVPrr~~~i~~~g~~~ee~vy~i~ 272 (285)
T COG1831 221 AAEL--GPRFMMETDYIDDPRRP--------------------------GAVLGPKTVPRRTREILEKGDLTEEDVYRIH 272 (285)
T ss_pred HHhc--CCceEeecccccCcccC--------------------------CCcCCccchhHHHHHHHHhcCCcHHHHHHHH
Confidence 3332 34799999986532222 2233577888888888777778899999999
Q ss_pred HHHHHHhcCCC
Q psy4448 397 HQNTLRLFFPH 407 (487)
Q Consensus 397 ~~N~~rlf~~~ 407 (487)
-+|..++|++.
T Consensus 273 ~E~pe~VYg~~ 283 (285)
T COG1831 273 VENPERVYGIE 283 (285)
T ss_pred HhCHHHHhCcc
Confidence 99999999876
No 326
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=28.37 E-value=5.7e+02 Score=26.29 Aligned_cols=121 Identities=18% Similarity=0.161 Sum_probs=76.3
Q ss_pred HHhHHHHHHHHhcCCC-eEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCC---CCCChHHHHH
Q psy4448 52 VEDSISSLKLAQSDER-LYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRV---QYCPVETQLK 127 (487)
Q Consensus 52 ~~~~~~~~~la~~~~~-v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~---~~~~~e~Q~~ 127 (487)
++-.+...+.|=+.+. |-.++|--|...+ ++.++.|+++.+. --+.| |.||.-..- ..-++.+-..
T Consensus 99 vevLre~ye~aL~~~~VVGLsIgTRPDClp------d~VldlL~e~~~r---~~vWv-ELGLQT~h~~Tlk~iNRgHd~~ 168 (312)
T COG1242 99 VEVLREMYEQALSEAGVVGLSIGTRPDCLP------DDVLDLLAEYNKR---YEVWV-ELGLQTAHDKTLKRINRGHDFA 168 (312)
T ss_pred HHHHHHHHHHHhCcCCeeEEeecCCCCCCc------HHHHHHHHHHhhh---eEEEE-EeccchhhHHHHHHHhcccchH
Confidence 3444444555545555 6789999998875 5678888887764 24566 999985430 0113445667
Q ss_pred HHHHHHHHhhhCCCCEEEEecC-----chHHHHHHHHHh---CCCCCCc-EEEEecCCCHHHHHHH
Q psy4448 128 YFRKQLDLSVTHKLPLFLHCRN-----AKSDFIEIMKEY---APKLPRK-GVIHSFDGTPFQAVDS 184 (487)
Q Consensus 128 vF~~qL~LA~el~lPViIH~r~-----a~~d~l~iLk~~---~~~~~~~-~v~H~FsG~~~~a~~~ 184 (487)
.|.....-+++.|+-|+-|.-. ..+++++-++.. +... .+ -.+|--.|+. +++.+
T Consensus 169 ~y~dav~r~rkrgIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~G-IKlH~LhvvkgT~-m~k~Y 232 (312)
T COG1242 169 CYVDAVKRLRKRGIKVCTHLINGLPGETRDEMLETAKIVAELGVDG-IKLHPLHVVKGTP-MEKMY 232 (312)
T ss_pred HHHHHHHHHHHcCCeEEEEEeeCCCCCCHHHHHHHHHHHHhcCCce-EEEEEEEEecCCh-HHHHH
Confidence 7888899999999999999854 355666655543 2211 12 2466677773 44433
No 327
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=28.36 E-value=1.1e+02 Score=32.04 Aligned_cols=47 Identities=15% Similarity=0.279 Sum_probs=42.8
Q ss_pred cccCCCChhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHHh
Q psy4448 239 KMVKSRNEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEY 285 (487)
Q Consensus 239 ~~~~~~n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~~ 285 (487)
=++..+-.+.|...+++.|.+|++.|.|+++=..+.+..+.+++++.
T Consensus 240 ~l~~f~~s~~q~~F~e~~L~~ake~~I~~vl~~P~V~~~~~~~~~~~ 286 (345)
T PF07611_consen 240 YLSSFTFSETQFFFLEKFLKLAKENGIPVVLWWPKVSPPYEKLYKEL 286 (345)
T ss_pred hhcCCCCChhHHHHHHHHHHHHHHcCCcEEEEEeccCHHHHHHHHhh
Confidence 34557788999999999999999999999999999999999999985
No 328
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=28.32 E-value=6.1e+02 Score=27.29 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=41.2
Q ss_pred HHHHHHHHHh--------cCCCEEEEECC-----CHHhHHHHHHHHhcC----CCeEEEeecCCCCCCCcCCCchhhHHH
Q psy4448 30 IDHVLNRAWN--------AGLEKIIVTGT-----NVEDSISSLKLAQSD----ERLYSTVGCHPTRCSEFENDPEGYLQS 92 (487)
Q Consensus 30 ~~~vl~ra~~--------~GV~~ii~v~~-----~~~~~~~~~~la~~~----~~v~~avGiHP~~~~~~~~~~~~~l~~ 92 (487)
++.++++++. .+|..+...|. +++.+.++++..++. +.+-.++-.+|..+. ++.++.
T Consensus 83 ~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~l~------~e~l~~ 156 (455)
T TIGR00538 83 LDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLSPEQISRLMKLIRENFPFNADAEISIEIDPRYIT------KDVIDA 156 (455)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEeccCcCC------HHHHHH
Confidence 5556666553 26666666554 456777777766553 345677888996552 233333
Q ss_pred HHHHHHhcCCCEEEEEeeCCCCC
Q psy4448 93 LDKIIKEGGKKVVAFGEFGLDYD 115 (487)
Q Consensus 93 L~~ll~~~~~~vvaIGEIGLD~~ 115 (487)
|.+ . .+.-| .+|++-.
T Consensus 157 lk~---~---G~~ri-siGvqS~ 172 (455)
T TIGR00538 157 LRD---E---GFNRL-SFGVQDF 172 (455)
T ss_pred HHH---c---CCCEE-EEcCCCC
Confidence 332 2 24445 6788743
No 329
>PF05563 SpvD: Salmonella plasmid virulence protein SpvD; InterPro: IPR008834 This family consists of several SpvD plasmid virulence proteins from different Salmonella species.
Probab=28.25 E-value=23 Score=32.20 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=18.0
Q ss_pred eeecCCCCCCCceecCCccc
Q psy4448 466 VAFGEFGLDYDRVQYCPVET 485 (487)
Q Consensus 466 ~a~g~~~~d~~~~~fc~~~~ 485 (487)
..||||.-||+.++.|.|+.
T Consensus 155 piigecrhdfnavviceydk 174 (216)
T PF05563_consen 155 PIIGECRHDFNAVVICEYDK 174 (216)
T ss_pred chhhhccCcCceEEEEecCC
Confidence 56999999999999999874
No 330
>PF12085 DUF3562: Protein of unknown function (DUF3562); InterPro: IPR021945 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 62 to 84 amino acids in length. This protein has two completely conserved residues (A and Y) that may be functionally important.
Probab=28.05 E-value=1.3e+02 Score=23.82 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=28.3
Q ss_pred ccHHHHHHHHHHhhCCCHHHHHHHHHHHHHHh
Q psy4448 372 ANIVQILEIVAAVRGVEREKLGPIIHQNTLRL 403 (487)
Q Consensus 372 ~~l~~v~~~iA~ikg~~~~~va~~~~~N~~rl 403 (487)
.++.++++.||+-.++|.+.|.......+..|
T Consensus 4 ~~~~e~i~~iA~~t~~P~e~V~~my~dt~~~l 35 (66)
T PF12085_consen 4 DNVDEVIRSIAEETGTPAETVRRMYDDTMREL 35 (66)
T ss_pred ccHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 46889999999999999999999988888855
No 331
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=27.94 E-value=6.5e+02 Score=25.47 Aligned_cols=77 Identities=25% Similarity=0.272 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHhcCCCEEEEECCCHHhHHHHHHHHhcCCCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEE
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAF 107 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~la~~~~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaI 107 (487)
..++..+++++++||+.++++-.-++......+.++++.--. .+=+-|.. +++ .|+.+.+...+-+.++
T Consensus 109 ~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~-I~lvaPtt-------~~~---rl~~i~~~a~GFiY~v 177 (265)
T COG0159 109 YGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDP-IFLVAPTT-------PDE---RLKKIAEAASGFIYYV 177 (265)
T ss_pred hhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcE-EEEeCCCC-------CHH---HHHHHHHhCCCcEEEE
Confidence 467888999999999999999888999988888888775211 11122421 123 4455444332456677
Q ss_pred EeeCCCCC
Q psy4448 108 GEFGLDYD 115 (487)
Q Consensus 108 GEIGLD~~ 115 (487)
+=.|.-..
T Consensus 178 s~~GvTG~ 185 (265)
T COG0159 178 SRMGVTGA 185 (265)
T ss_pred ecccccCC
Confidence 66666543
No 332
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=27.88 E-value=1.1e+02 Score=34.00 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHHhhhCCCCEEEEe--ccchHHHHHHHHHhCCCCCCCcEEEEeeC
Q psy4448 247 PANIVYFRKQLDLSVTHKLPLFLHC--RNAKSDFIEIMKEYAPKLPRKGVIHSFDG 300 (487)
Q Consensus 247 P~Q~~~F~~ql~lA~~~~lPl~iH~--r~a~~~~l~il~~~~~~~~~~gv~hsfsG 300 (487)
....+-|+..++-|.+.|+|+.+|+ -.|.+.+++.+.+..++.+..|..|.+--
T Consensus 317 l~~~e~l~~~v~~a~~~gl~v~vHAiGD~Av~~~LdafE~~~~~~~~~~~r~rieH 372 (535)
T COG1574 317 LLTEEELEELVRAADERGLPVAVHAIGDGAVDAALDAFEKARKKNGLKGLRHRIEH 372 (535)
T ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEechHHHHHHHHHHHHHhhhcCCccCCceeee
Confidence 3456789999999999999999999 67899999999888765443344444433
No 333
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=27.86 E-value=6.3e+02 Score=25.29 Aligned_cols=139 Identities=9% Similarity=0.011 Sum_probs=76.5
Q ss_pred CHHHHHHHHHhc-CCCEEEEECC-------CHHhHHHHHHHHhcC--CCeEEEeecCCCCCCCcCCCchhhHHHHHHHHH
Q psy4448 29 DIDHVLNRAWNA-GLEKIIVTGT-------NVEDSISSLKLAQSD--ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIK 98 (487)
Q Consensus 29 d~~~vl~ra~~~-GV~~ii~v~~-------~~~~~~~~~~la~~~--~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~ 98 (487)
.+...++...+. |+..+++.|+ +.++..++++.+.+. +++-..+|+=-.. ..+.++ +.+.+.
T Consensus 22 ~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~-------~~~ai~-~a~~a~ 93 (288)
T cd00954 22 VLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLN-------LKESQE-LAKHAE 93 (288)
T ss_pred HHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCC-------HHHHHH-HHHHHH
Confidence 345677888888 9999988876 456666776654432 3444444552111 123232 333343
Q ss_pred hcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhC-CCCEEEEecCc------hHHHHHHHHHhCCCCCCcEEE
Q psy4448 99 EGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTH-KLPLFLHCRNA------KSDFIEIMKEYAPKLPRKGVI 171 (487)
Q Consensus 99 ~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el-~lPViIH~r~a------~~d~l~iLk~~~~~~~~~~v~ 171 (487)
+. .+.+| -+--.||. . ..|.++++..-++|... ++||+|..--+ .-+++.-|.+.+. -.-+
T Consensus 94 ~~--Gad~v-~~~~P~y~-~----~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~~pn----ivgi 161 (288)
T cd00954 94 EL--GYDAI-SAITPFYY-K----FSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFEIPN----VIGV 161 (288)
T ss_pred Hc--CCCEE-EEeCCCCC-C----CCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhcCCC----EEEE
Confidence 31 23333 23344443 1 23677888888888888 89999885321 2244444444322 2333
Q ss_pred EecCCCHHHHHHHHcC
Q psy4448 172 HSFDGTPFQAVDSLKT 187 (487)
Q Consensus 172 H~FsG~~~~a~~~l~~ 187 (487)
.--+|+.....++++.
T Consensus 162 K~s~~d~~~~~~~~~~ 177 (288)
T cd00954 162 KFTATDLYDLERIRAA 177 (288)
T ss_pred EeCCCCHHHHHHHHHh
Confidence 4346777666655543
No 334
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=27.60 E-value=2.7e+02 Score=29.00 Aligned_cols=71 Identities=21% Similarity=0.330 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhhCC--CCEEEEecCch-------HHHHHHHHHhCCCCCCcEEEEecC--CCHHHHHHHHcCccchhHh
Q psy4448 126 LKYFRKQLDLSVTHK--LPLFLHCRNAK-------SDFIEIMKEYAPKLPRKGVIHSFD--GTPFQAVDSLKTKENLETV 194 (487)
Q Consensus 126 ~~vF~~qL~LA~el~--lPViIH~r~a~-------~d~l~iLk~~~~~~~~~~v~H~Fs--G~~~~a~~~l~~~~g~e~v 194 (487)
..-|..+++.|++.+ +|+.+|+-... +.+.+.| ..+. .-|=|++. .+++.++.+.+. +. .+
T Consensus 178 ~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al-~lg~----~RIGHG~~~~~dp~ll~~l~~~--~I-~l 249 (345)
T cd01321 178 LLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDAL-LLNT----KRIGHGFALPKHPLLMDLVKKK--NI-AI 249 (345)
T ss_pred HHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHH-HhCC----CcCccccccCcCHHHHHHHHHc--CC-eE
Confidence 456778888999999 99999998653 3566666 3433 23445555 356677666655 21 23
Q ss_pred hhcCCCceee
Q psy4448 195 KSIPEDRLLL 204 (487)
Q Consensus 195 ~~iP~driLl 204 (487)
..+|..++++
T Consensus 250 EvCPtSN~~~ 259 (345)
T cd01321 250 EVCPISNQVL 259 (345)
T ss_pred EECcchhhhh
Confidence 4455555544
No 335
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=27.54 E-value=6.7e+02 Score=25.54 Aligned_cols=38 Identities=13% Similarity=0.357 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHhcCCCEEEEECCC------HHhHHHHHHHHhcCC
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTGTN------VEDSISSLKLAQSDE 66 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~~~------~~~~~~~~~la~~~~ 66 (487)
.+++.+ .+|-++|.+.++.=|.. .+..+++.+++..+.
T Consensus 88 ~~~e~i-~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~g 131 (286)
T PRK08610 88 SSFEKC-KEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKG 131 (286)
T ss_pred CCHHHH-HHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 466554 57888899876655543 233334555665543
No 336
>PRK08204 hypothetical protein; Provisional
Probab=27.43 E-value=6.7e+02 Score=26.53 Aligned_cols=51 Identities=20% Similarity=0.191 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhhCCCCEEEEecc----chHHHHHHHHHhCCCCCCCcEEEEeeCC
Q psy4448 251 VYFRKQLDLSVTHKLPLFLHCRN----AKSDFIEIMKEYAPKLPRKGVIHSFDGT 301 (487)
Q Consensus 251 ~~F~~ql~lA~~~~lPl~iH~r~----a~~~~l~il~~~~~~~~~~gv~hsfsG~ 301 (487)
+.+++.+++|.++|+|+-+|+-. ...+.++.+.+....-+..-+.|+...+
T Consensus 201 e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~l~~~g~~~~~~~i~H~~~~~ 255 (449)
T PRK08204 201 EVARADFRLARELGLPISMHQGFGPWGATPRGVEQLHDAGLLGPDLNLVHGNDLS 255 (449)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcCCCcccCCCHHHHHHHCCCCCCCeEEEecCCCC
Confidence 45677889999999999999842 2335667776653221223456766554
No 337
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=27.41 E-value=1.2e+02 Score=26.21 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhhCCCCEEEEecCchHHHH
Q psy4448 123 ETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFI 155 (487)
Q Consensus 123 e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l 155 (487)
..+...+-.+++.+.+.+.||.|||..+....-
T Consensus 64 ~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~ 96 (139)
T cd00127 64 SKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSA 96 (139)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEECCCCCchhH
Confidence 344555556666666678899999998765443
No 338
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=27.36 E-value=19 Score=41.11 Aligned_cols=28 Identities=32% Similarity=0.558 Sum_probs=24.4
Q ss_pred ChhHHHHhhHHhhhcCC----ceeeeecCCCC
Q psy4448 446 DPEGYLQSLDKIIKEGG----KKVVAFGEFGL 473 (487)
Q Consensus 446 ~~~~~~~~l~~~~~~~~----~~~~a~g~~~~ 473 (487)
||+||+.+|+.++-++. |||.+++|.=-
T Consensus 310 DP~gYl~rLR~~~G~~~~I~VEKIL~~~E~Lp 341 (889)
T COG3280 310 DPKGYLRRLRQLVGPDRYIVVEKILAVDEPLP 341 (889)
T ss_pred CHHHHHHHHHHhcCCCcEEEEehhccCCCCCC
Confidence 79999999999888776 99999999643
No 339
>PRK15250 virulence protein SpvD; Provisional
Probab=27.21 E-value=23 Score=32.20 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=18.0
Q ss_pred eeecCCCCCCCceecCCccc
Q psy4448 466 VAFGEFGLDYDRVQYCPVET 485 (487)
Q Consensus 466 ~a~g~~~~d~~~~~fc~~~~ 485 (487)
..||||.-||+.++.|.|+.
T Consensus 155 piigecrhdfnavviceydk 174 (216)
T PRK15250 155 PIIGECRHDFNAVVICEYDK 174 (216)
T ss_pred chhhhhhccCceEEEEecCC
Confidence 56999999999999999874
No 340
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=27.09 E-value=4.9e+02 Score=25.53 Aligned_cols=59 Identities=10% Similarity=0.103 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHhc-CCCEEEEEeeCCCCCCCCCC--ChHHHHHHHHHHHHHhhhCCCCE-EEEec
Q psy4448 88 GYLQSLDKIIKEG-GKKVVAFGEFGLDYDRVQYC--PVETQLKYFRKQLDLSVTHKLPL-FLHCR 148 (487)
Q Consensus 88 ~~l~~L~~ll~~~-~~~vvaIGEIGLD~~~~~~~--~~e~Q~~vF~~qL~LA~el~lPV-iIH~r 148 (487)
+..+.+.+++.++ .-.+.+.+ +.++...... .++.=.+.|++.+++|.+++.+. ++|.-
T Consensus 45 ~~~~~l~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g 107 (279)
T cd00019 45 ERAEKFKAIAEEGPSICLSVHA--PYLINLASPDKEKREKSIERLKDEIERCEELGIRLLVFHPG 107 (279)
T ss_pred HHHHHHHHHHHHcCCCcEEEEc--CceeccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCC
Confidence 5577888888774 11222222 2222111111 24445667999999999999995 46654
No 341
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=26.91 E-value=2.8e+02 Score=26.96 Aligned_cols=48 Identities=13% Similarity=0.136 Sum_probs=30.9
Q ss_pred CHHHHHHHHHhcCCCEEEEECCCHHh-HHHHHHHHhcCCCeEEEeecCCC
Q psy4448 29 DIDHVLNRAWNAGLEKIIVTGTNVED-SISSLKLAQSDERLYSTVGCHPT 77 (487)
Q Consensus 29 d~~~vl~ra~~~GV~~ii~v~~~~~~-~~~~~~la~~~~~v~~avGiHP~ 77 (487)
+.+..++.+.++|++.+.+-+..... ..++++..++++ ...++.+.|.
T Consensus 76 ~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G-~~~gval~p~ 124 (228)
T PTZ00170 76 NPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAG-MKVGVAIKPK 124 (228)
T ss_pred CHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCC-CeEEEEECCC
Confidence 34556778888898866554443333 666777766654 4667888874
No 342
>COG4806 RhaA L-rhamnose isomerase [Carbohydrate transport and metabolism]
Probab=26.54 E-value=1.4e+02 Score=30.60 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=27.5
Q ss_pred hcCCCceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccccCCCChhhhHHHHHHHHHHhhhCCCC
Q psy4448 196 SIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVYFRKQLDLSVTHKLP 266 (487)
Q Consensus 196 ~iP~driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~P~Q~~~F~~ql~lA~~~~lP 266 (487)
.+-+.-|-+|||-|.-. ++..| +.|+..+++|+++||-
T Consensus 91 rlNLHAIY~etd~~V~r--------------------~~ieP-------------~HF~~WV~WAK~~gLG 128 (419)
T COG4806 91 RLNLHAIYLESDTPVER--------------------DQIKP-------------EHFKNWVEWAKANGLG 128 (419)
T ss_pred ccceeEEEecCCCcchh--------------------cccCh-------------hhhhHHHHHHHhcCCC
Confidence 45677899999987642 11111 4699999999999885
No 343
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=26.47 E-value=1.3e+02 Score=28.55 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=27.3
Q ss_pred EEEEeeCCcccccccccchhhHHHhhhCCCCceEeccCCCC
Q psy4448 294 VIHSFDGTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPW 334 (487)
Q Consensus 294 v~hsfsG~~~~~~~~~k~~~~~e~v~~iPldrlLlETD~P~ 334 (487)
-.+-+||. .-++-.+..++++.-+|-...++||++--
T Consensus 93 d~vRiSG~----EP~l~~EHvlevIeLl~~~tFvlETNG~~ 129 (228)
T COG5014 93 DLVRISGA----EPILGREHVLEVIELLVNNTFVLETNGLM 129 (228)
T ss_pred cEEEeeCC----CccccHHHHHHHHHhccCceEEEEeCCeE
Confidence 36777883 22444456679999999999999999954
No 344
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=26.42 E-value=7.9e+02 Score=25.96 Aligned_cols=62 Identities=18% Similarity=0.000 Sum_probs=39.1
Q ss_pred HHHhhhCCC----CEEEEecCchHHHHHHHHHhCCCCCCcEEEEecCCCHH------HHHHHHcCccchhHhhhcCCCce
Q psy4448 133 LDLSVTHKL----PLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPF------QAVDSLKTKENLETVKSIPEDRL 202 (487)
Q Consensus 133 L~LA~el~l----PViIH~r~a~~d~l~iLk~~~~~~~~~~v~H~FsG~~~------~a~~~l~~~~g~e~v~~iP~dri 202 (487)
++.+.++++ .++.|+....++.++.|++.+. .+.||-..+.. -++++++. | -++
T Consensus 228 ~~~l~~~G~l~~~~~~~H~~~l~~~~l~~la~~g~-----~v~~~P~sn~~lg~g~~~~~~~~~~--G---------v~v 291 (424)
T PRK08393 228 VVLLDEIGFLNEDVIAAHGVWLSSRDIRILASAGV-----TVAHNPASNMKLGSGVMPLRKLLNA--G---------VNV 291 (424)
T ss_pred HHHHHHcCCCCCCcEEEEeecCCHHHHHHHHhcCC-----EEEECHHHHHhhccCCCCHHHHHHC--C---------CcE
Confidence 344445443 2689999998999999987643 68888543211 11222222 2 378
Q ss_pred eeccCCCC
Q psy4448 203 LLETDCPW 210 (487)
Q Consensus 203 LlETD~P~ 210 (487)
.+.||+|.
T Consensus 292 ~lGtD~~~ 299 (424)
T PRK08393 292 ALGTDGAA 299 (424)
T ss_pred EEecCCCc
Confidence 99999875
No 345
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=26.31 E-value=7.8e+02 Score=25.88 Aligned_cols=54 Identities=13% Similarity=0.246 Sum_probs=42.6
Q ss_pred HHHHHHHhhhC-CCCEEEEecCchH-HHHHHHHHhCCCCCCcEEEEecCCCHHHHHHHHcC
Q psy4448 129 FRKQLDLSVTH-KLPLFLHCRNAKS-DFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKT 187 (487)
Q Consensus 129 F~~qL~LA~el-~lPViIH~r~a~~-d~l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~ 187 (487)
|.+.=++++.. +.|+++|--.... ++++.+..++... =-.+.-+.+++++++++
T Consensus 214 ~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~-----~~~~g~~~e~~~kai~~ 269 (347)
T PRK13399 214 IDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGKM-----KETYGVPVEEIQRGIKH 269 (347)
T ss_pred HHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCCc-----cccCCCCHHHHHHHHHC
Confidence 56666788888 7999999988754 8889898887643 24567788999999998
No 346
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=26.22 E-value=7e+02 Score=25.33 Aligned_cols=60 Identities=10% Similarity=0.096 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCC--CChHHHHHHHHHHHHHh-hhCCCCEEEEecCc
Q psy4448 87 EGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQY--CPVETQLKYFRKQLDLS-VTHKLPLFLHCRNA 150 (487)
Q Consensus 87 ~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~--~~~e~Q~~vF~~qL~LA-~el~lPViIH~r~a 150 (487)
+..++..++++++ ....| .||-.-.+.+. .+.+.+.+-+...++.. .+++.||+|=+.++
T Consensus 38 ~~a~~~a~~~~~~---GAdII-DIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~~~ 100 (282)
T PRK11613 38 IDAVKHANLMINA---GATII-DVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVWISVDTSKP 100 (282)
T ss_pred HHHHHHHHHHHHC---CCcEE-EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEECCCH
Confidence 3445566666665 22233 44432222111 12222322233333333 35678888877663
No 347
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=26.12 E-value=1.6e+02 Score=30.20 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=23.9
Q ss_pred hCCCHHHHHHHHHHHHHHhcCCCCCCCCCcc
Q psy4448 385 RGVEREKLGPIIHQNTLRLFFPHELPTPTRF 415 (487)
Q Consensus 385 kg~~~~~va~~~~~N~~rlf~~~~~~~~~~~ 415 (487)
.+++++.+.+.++.|..|+|++. |.+-+|
T Consensus 276 ~~l~l~~~v~~~s~nPA~i~gl~--~~kg~i 304 (335)
T cd01294 276 EHNALDKLEAFASDNGPNFYGLP--PNKKTI 304 (335)
T ss_pred ccCCHHHHHHHHHhHHHHHhCCC--CCCCeE
Confidence 47999999999999999999995 334444
No 348
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=26.09 E-value=5.8e+02 Score=24.32 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=24.7
Q ss_pred HHHHHHhhhCCCCEEEEeccchHHHHHHHHH
Q psy4448 254 RKQLDLSVTHKLPLFLHCRNAKSDFIEIMKE 284 (487)
Q Consensus 254 ~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~ 284 (487)
...++.+++.|++|.+..++..+++-++++.
T Consensus 190 ~~~i~~~~~~g~~v~~Wtvn~~~~~~~~~~~ 220 (230)
T cd08563 190 EEVVEELKKRGIPVRLWTVNEEEDMKRLKDL 220 (230)
T ss_pred HHHHHHHHHCCCEEEEEecCCHHHHHHHHHC
Confidence 4577888899999999999888777666653
No 349
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=26.06 E-value=1.8e+02 Score=35.75 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=37.9
Q ss_pred cEEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC-CHHhHHHHHHHHhcC
Q psy4448 2 KYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT-NVEDSISSLKLAQSD 65 (487)
Q Consensus 2 ~~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~-~~~~~~~~~~la~~~ 65 (487)
+-||.|+|...... .| ...+++++++|.+.|+..+.+.-- +...+..+.+.++++
T Consensus 103 krvDLH~HT~~S~~----Dg-----~~~~~elv~~A~~~Gl~aiAITDH~~~~~~~~~~~~~~~~ 158 (1213)
T TIGR01405 103 KRVELHFHTKMSQM----DA-----ITSVQEYVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKD 158 (1213)
T ss_pred ceEEeeeCccCccc----cc-----CCCHHHHHHHHHHCCCCEEEEecCCCccCHHHHHHHHHhc
Confidence 46899999875422 12 568999999999999987766532 244555555555554
No 350
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=25.41 E-value=4.7e+02 Score=27.53 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=18.6
Q ss_pred ChhhhHHHHHHHHHHhhhCCCCEE
Q psy4448 245 NEPANIVYFRKQLDLSVTHKLPLF 268 (487)
Q Consensus 245 n~P~Q~~~F~~ql~lA~~~~lPl~ 268 (487)
+..-+++.-++-.++|...|.+|=
T Consensus 140 pfEeNI~~TkevVe~Ah~~GvsVE 163 (350)
T PRK09197 140 PLEENIEICSKYLERMAKAGMTLE 163 (350)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEE
Confidence 345667778888999999998863
No 351
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=25.33 E-value=2.3e+02 Score=28.34 Aligned_cols=92 Identities=20% Similarity=0.211 Sum_probs=62.1
Q ss_pred ccchHHHHHHHHHhCCCCCCCcEEEEeeCCcccccccccchhhHHHhhhCCCCceEeccCCCCCCCCCCCcchhhHhhhh
Q psy4448 272 RNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQH 351 (487)
Q Consensus 272 r~a~~~~l~il~~~~~~~~~~gv~hsfsG~~~~~~~~~k~~~~~e~v~~iPldrlLlETD~P~~~~~p~~~~~~~l~~~~ 351 (487)
+...++..+-|++..-+....|.+-|-+|. .+ ..-..+.+|-=-||.||+..+ |.
T Consensus 131 va~~~~~~~~l~~~~~~~~~~G~I~G~~g~------ll----~e~~~r~i~a~~ll~et~~~~--PD------------- 185 (244)
T COG1938 131 VATSEEKLEKLKDLGAEPLEEGTIVGPSGA------LL----NECLKRGIPALVLLAETFGDR--PD------------- 185 (244)
T ss_pred EecchhhhhHHhhcCCCccccceeecccHH------HH----HHHHHcCCCeEEEeccccCCC--CC-------------
Confidence 455566677788776555567777777772 11 113567889999999999976 22
Q ss_pred hhhhhhccCCccCCCCCCccccHHHHHHHHHHhhCCC---------HHHHHHHHHHHHHHhcCCC
Q psy4448 352 EKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVE---------REKLGPIIHQNTLRLFFPH 407 (487)
Q Consensus 352 ~~~~~~~~~~~~~~~~~n~P~~l~~v~~~iA~ikg~~---------~~~va~~~~~N~~rlf~~~ 407 (487)
|.-...+++.+.++.|++ .+++.+++.++..++.+..
T Consensus 186 -------------------P~AAa~vve~lnk~~~l~V~td~L~keAe~i~~~lekl~eq~~~~~ 231 (244)
T COG1938 186 -------------------PRAAARVVEALNKMLGLNVDTDKLEKEAEEIEEQLEKLAEQLEKEE 231 (244)
T ss_pred -------------------hHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566778888888754 4556677777777776554
No 352
>TIGR03586 PseI pseudaminic acid synthase.
Probab=25.28 E-value=3.3e+02 Score=28.35 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCCCEE
Q psy4448 31 DHVLNRAWNAGLEKI 45 (487)
Q Consensus 31 ~~vl~ra~~~GV~~i 45 (487)
.++++.|.++|.+.+
T Consensus 20 ~~lI~~A~~aGAdav 34 (327)
T TIGR03586 20 LAMIEAAKAAGADAI 34 (327)
T ss_pred HHHHHHHHHhCCCEE
Confidence 358888999998743
No 353
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=25.25 E-value=98 Score=32.57 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHH
Q psy4448 248 ANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMK 283 (487)
Q Consensus 248 ~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~ 283 (487)
.+.+.++...++|+++++|+.+|....-.|.-.+.+
T Consensus 160 ~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~ 195 (381)
T cd01312 160 VHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEE 195 (381)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHH
Confidence 456789999999999999999999988888655443
No 354
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=25.15 E-value=5.3e+02 Score=26.30 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=16.9
Q ss_pred hhhhHHHHHHHHHHhhhCCCCE
Q psy4448 246 EPANIVYFRKQLDLSVTHKLPL 267 (487)
Q Consensus 246 ~P~Q~~~F~~ql~lA~~~~lPl 267 (487)
...+++.-++-.++|...|.+|
T Consensus 113 ~eeNi~~T~~vv~~Ah~~gv~V 134 (288)
T TIGR00167 113 FEENIELTKKVVERAHKMGVSV 134 (288)
T ss_pred HHHHHHHHHHHHHHHHHcCCEE
Confidence 4456777788888898888876
No 355
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=24.86 E-value=3.7e+02 Score=26.74 Aligned_cols=114 Identities=11% Similarity=0.144 Sum_probs=60.0
Q ss_pred HHHHHHHhcCCCEEEEECC-CHHhHHHHHHHHhcCCCeEEE---------eecCCCCCCCcCC--------CchhhHHHH
Q psy4448 32 HVLNRAWNAGLEKIIVTGT-NVEDSISSLKLAQSDERLYST---------VGCHPTRCSEFEN--------DPEGYLQSL 93 (487)
Q Consensus 32 ~vl~ra~~~GV~~ii~v~~-~~~~~~~~~~la~~~~~v~~a---------vGiHP~~~~~~~~--------~~~~~l~~L 93 (487)
..++++-++|...++++-+ +.++.+.+++.++-.|.=.-+ +|-.|.+.....+ +..+-++.+
T Consensus 82 ~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~IEt~~av~ni 161 (256)
T PRK10558 82 VIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQIESQQGVDNV 161 (256)
T ss_pred HHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEECCHHHHHHH
Confidence 4567888889888887755 577777777777643421111 1111222111110 012345667
Q ss_pred HHHHHhcCCCE--EEEEeeCCCCCC----CCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC
Q psy4448 94 DKIIKEGGKKV--VAFGEFGLDYDR----VQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN 149 (487)
Q Consensus 94 ~~ll~~~~~~v--vaIGEIGLD~~~----~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~ 149 (487)
++++.. +.+ +.||-- |+.. ......+.-..+..+.+..|++.++|+-+++..
T Consensus 162 ~eI~av--~gvd~l~iG~~--DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~~~~~ 219 (256)
T PRK10558 162 DAIAAT--EGVDGIFVGPS--DLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGILAPV 219 (256)
T ss_pred HHHhCC--CCCcEEEECHH--HHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEEcCCC
Confidence 777753 343 333321 2210 011122334446777888888888888776644
No 356
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=24.86 E-value=1.9e+02 Score=25.31 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCCEEEEEeeCCCCC-CCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHhCCCCCCc
Q psy4448 90 LQSLDKIIKEGGKKVVAFGEFGLDYD-RVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRK 168 (487)
Q Consensus 90 l~~L~~ll~~~~~~vvaIGEIGLD~~-~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~~~~~~~~ 168 (487)
.+.++.++... +.++-|| +|-.-. . .+.+ .++..++.+.-|..-.-.+..+++.+|...+.+ +.
T Consensus 48 ~~~l~~ll~~~-peivliG-TG~~~~~~---~~~~--------~~~~l~~~Gi~ve~m~T~aAcrTYN~L~~EgRr--V~ 112 (117)
T cd05126 48 PEELEELLEEG-VEVIVIG-TGQSGALK---VPPE--------TVEKLEKRGVEVLVLPTEEAVKRYNELAGKGRR--VL 112 (117)
T ss_pred HHHHHHHHhcC-CCEEEEc-CCCCcccc---CCHH--------HHHHHHhcCCEEEEcChHHHHHHHHHHHhCCCe--EE
Confidence 45677777654 6789888 777631 1 1111 122445567778777778888999999876532 34
Q ss_pred EEEE
Q psy4448 169 GVIH 172 (487)
Q Consensus 169 ~v~H 172 (487)
..||
T Consensus 113 Aa~H 116 (117)
T cd05126 113 AVIH 116 (117)
T ss_pred EEEe
Confidence 6777
No 357
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=24.70 E-value=2.8e+02 Score=29.15 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHhCCCCCCcEEEEecCCCHHHHHHHHc
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLK 186 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~ 186 (487)
...+++.++-.++.+.|+++|..+.....++.+++.+.. .++.+-.+.++..+++.+.
T Consensus 254 ~P~~k~i~~~i~~~g~~~ilh~cG~~~~~l~~l~~~g~~---~v~~~~~~~dl~~ak~~~g 311 (378)
T cd03308 254 WPSFKKVVEGLAARGQRIFLFFEGDWERYLEYLQELPKG---KTVGLFEYGDPKKVKEKLG 311 (378)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcHHHHHHHHhcCCC---cEEEcCCCCCHHHHHHHhC
Confidence 344466666666678899999999999999999887542 3555555688888887765
No 358
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=24.47 E-value=8.7e+02 Score=25.80 Aligned_cols=35 Identities=11% Similarity=0.064 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhhCCCCEEEEeccchHHHHHHHHH
Q psy4448 250 IVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKE 284 (487)
Q Consensus 250 ~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~ 284 (487)
.+.++..+++|.++|+|+-+|+-.+-.+....++.
T Consensus 213 ~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~ 247 (451)
T PRK08203 213 RELMRESAALARRLGVRLHTHLAETLDEEAFCLER 247 (451)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHH
Confidence 46788899999999999999998777766555543
No 359
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=24.33 E-value=3.2e+02 Score=28.17 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhhC-CCCEEEEecCchHHHHHHHHHhCCCCCCcEEEEe-cC-CCHHHHHHHHc
Q psy4448 126 LKYFRKQLDLSVTH-KLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHS-FD-GTPFQAVDSLK 186 (487)
Q Consensus 126 ~~vF~~qL~LA~el-~lPViIH~r~a~~d~l~iLk~~~~~~~~~~v~H~-Fs-G~~~~a~~~l~ 186 (487)
...+++.++-.++. +.|+++|+.++....++.+.+.+.. +++. +. .+...+++.+.
T Consensus 197 ~P~~krIi~~ik~~~g~piilH~cG~~~~~l~~~~e~g~d-----vl~~d~~~~dl~eak~~~g 255 (321)
T cd03309 197 LPRMQRIFDFLRSNTSALIVHHSCGAAASLVPSMAEMGVD-----SWNVVMTANNTAELRRLLG 255 (321)
T ss_pred HHHHHHHHHHHHhccCCceEEEeCCCcHHHHHHHHHcCCC-----EEEecCCCCCHHHHHHHhC
Confidence 44456777777766 7899999999988888888887542 3332 34 38877777655
No 360
>PRK07213 chlorohydrolase; Provisional
Probab=24.26 E-value=2.2e+02 Score=29.72 Aligned_cols=61 Identities=13% Similarity=0.042 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCchHHH-----------HHHHHHhCCCCCCcEEEEecCCCHHHHHHHHcCc
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNAKSDF-----------IEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKTK 188 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a~~d~-----------l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~~ 188 (487)
.+.+++..++|+++++||.+|+-....+. ++.+.+.+.. + +.+.||+.-+.+.++.+.+.+
T Consensus 178 ~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~G~~~v~~~~~~G~~-~-~~i~H~~~~~~~~i~~la~~g 249 (375)
T PRK07213 178 DEELKFICKECKREKKIFSIHAAEHKGSVEYSLEKYGMTEIERLINLGFK-P-DFIVHATHPSNDDLELLKENN 249 (375)
T ss_pred HHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHcCCChHHHHHhcCCC-C-CEEEECCCCCHHHHHHHHHcC
Confidence 35789999999999999999996654432 3444444432 2 478999999999999888774
No 361
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=24.17 E-value=5.4e+02 Score=23.30 Aligned_cols=102 Identities=15% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHhhhCCCC-EEEEe---------------------cCchHHHHHHHHHhCCCCCCcEEEEec---CCCHHHHHH
Q psy4448 129 FRKQLDLSVTHKLP-LFLHC---------------------RNAKSDFIEIMKEYAPKLPRKGVIHSF---DGTPFQAVD 183 (487)
Q Consensus 129 F~~qL~LA~el~lP-ViIH~---------------------r~a~~d~l~iLk~~~~~~~~~~v~H~F---sG~~~~a~~ 183 (487)
++...++++++++. +.+|. ++...+.+++.+..+. ...++|.. .+.......
T Consensus 29 ~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~---~~i~~~~g~~~~~~~~~~~~ 105 (213)
T PF01261_consen 29 AEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGA---KYIVVHSGRYPSGPEDDTEE 105 (213)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTB---SEEEEECTTESSSTTSSHHH
T ss_pred HHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCC---CceeecCcccccccCCCHHH
Q ss_pred HHcCccchhHhhhcCCCceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccccCCCChhhhHHHHHHHHHHhhhC
Q psy4448 184 SLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVYFRKQLDLSVTH 263 (487)
Q Consensus 184 ~l~~~~g~e~v~~iP~driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~P~Q~~~F~~ql~lA~~~ 263 (487)
..+. -.+.|++-++.|++.
T Consensus 106 ~~~~-------------------------------------------------------------~~~~l~~l~~~a~~~ 124 (213)
T PF01261_consen 106 NWER-------------------------------------------------------------LAENLRELAEIAEEY 124 (213)
T ss_dssp HHHH-------------------------------------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHH-------------------------------------------------------------HHHHHHHHHhhhhhh
Q ss_pred CCCEEEEeccch--------HHHHHHHHHhCCCCCCCcEEEEe
Q psy4448 264 KLPLFLHCRNAK--------SDFIEIMKEYAPKLPRKGVIHSF 298 (487)
Q Consensus 264 ~lPl~iH~r~a~--------~~~l~il~~~~~~~~~~gv~hsf 298 (487)
|..+.|+.-... +++.+++++...+ .+.++|
T Consensus 125 gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~i~~ 163 (213)
T PF01261_consen 125 GVRIALENHPGPFSETPFSVEEIYRLLEEVDSP----NVGICF 163 (213)
T ss_dssp TSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTT----TEEEEE
T ss_pred cceEEEecccCccccchhhHHHHHHHHhhcCCC----cceEEE
No 362
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=24.13 E-value=6.7e+02 Score=24.38 Aligned_cols=96 Identities=8% Similarity=0.096 Sum_probs=50.9
Q ss_pred CCCHHhHHHHHHHHhcCCCeEEEeec-CCC-CCCCcCCCchhhHHHHHHHHHhcCCCEEEEEe--eCCCCCCC--CCCCh
Q psy4448 49 GTNVEDSISSLKLAQSDERLYSTVGC-HPT-RCSEFENDPEGYLQSLDKIIKEGGKKVVAFGE--FGLDYDRV--QYCPV 122 (487)
Q Consensus 49 ~~~~~~~~~~~~la~~~~~v~~avGi-HP~-~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGE--IGLD~~~~--~~~~~ 122 (487)
+....++.+.++.+++.+.-..-+.. .|+ +.... .....+.+.+++.++.=++.+++- .|..+... +...+
T Consensus 9 ~~~~~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~---~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r 85 (275)
T PRK09856 9 GHQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDL---KAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMR 85 (275)
T ss_pred hheeCCHHHHHHHHHHcCCCEEEEccCCcccccccc---CchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHH
Confidence 33344677788888776532212211 121 11111 123467788888774223444431 12222111 11123
Q ss_pred HHHHHHHHHHHHHhhhCCCCEE-EEe
Q psy4448 123 ETQLKYFRKQLDLSVTHKLPLF-LHC 147 (487)
Q Consensus 123 e~Q~~vF~~qL~LA~el~lPVi-IH~ 147 (487)
+...+.+++.+++|..+|.+.+ +|.
T Consensus 86 ~~~~~~~~~~i~~a~~lGa~~i~~~~ 111 (275)
T PRK09856 86 RESLDMIKLAMDMAKEMNAGYTLISA 111 (275)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 4567899999999999999975 554
No 363
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=23.96 E-value=7.4e+02 Score=25.60 Aligned_cols=51 Identities=8% Similarity=0.048 Sum_probs=31.1
Q ss_pred CHHHHHHHHHh-------cCCCEEEEECCC-----HHhHHHHHHHHhcC--CCeEEEeecCCCCC
Q psy4448 29 DIDHVLNRAWN-------AGLEKIIVTGTN-----VEDSISSLKLAQSD--ERLYSTVGCHPTRC 79 (487)
Q Consensus 29 d~~~vl~ra~~-------~GV~~ii~v~~~-----~~~~~~~~~la~~~--~~v~~avGiHP~~~ 79 (487)
.++.++++++. .++..+..-|.+ ++...++++..+++ +..-.++-.+|...
T Consensus 32 y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~eitiE~nP~~~ 96 (350)
T PRK08446 32 YMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVSAKFYEPIFEIISPYLSKDCEITTEANPNSA 96 (350)
T ss_pred HHHHHHHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHhcCCCceEEEEeCCCCC
Confidence 34556666553 256665555544 45577777766553 34677899999654
No 364
>PRK00035 hemH ferrochelatase; Reviewed
Probab=23.94 E-value=7.9e+02 Score=25.11 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHhcCCCEEEEECCCH
Q psy4448 27 EPDIDHVLNRAWNAGLEKIIVTGTNV 52 (487)
Q Consensus 27 ~~d~~~vl~ra~~~GV~~ii~v~~~~ 52 (487)
.+.++++++++.+.|++.++++..-|
T Consensus 104 ~P~i~eal~~l~~~G~~~IivlPL~p 129 (333)
T PRK00035 104 NPSIEEALEALKADGVDRIVVLPLYP 129 (333)
T ss_pred CCCHHHHHHHHHhcCCCEEEEEECCC
Confidence 57899999999999999999887655
No 365
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.81 E-value=4.5e+02 Score=26.11 Aligned_cols=28 Identities=14% Similarity=0.064 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHhcCCCEEEEECCCHHh
Q psy4448 27 EPDIDHVLNRAWNAGLEKIIVTGTNVED 54 (487)
Q Consensus 27 ~~d~~~vl~ra~~~GV~~ii~v~~~~~~ 54 (487)
.+.+.+.++++.+.|.+.+=+...+|..
T Consensus 10 ~g~~~~a~~~~~~~G~~~~qif~~~P~~ 37 (274)
T TIGR00587 10 AGGLQAAYNRAAEIGATAFMFFLKSPRW 37 (274)
T ss_pred cCCHHHHHHHHHHhCCCEEEEEecCccc
Confidence 3577888999999998876554444443
No 366
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=23.69 E-value=3.8e+02 Score=29.41 Aligned_cols=89 Identities=22% Similarity=0.294 Sum_probs=50.6
Q ss_pred CCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHH-HhhhCCCCEEEEecCch-------HHHHHHHHHhCCCCCCcEEEEe
Q psy4448 102 KKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLD-LSVTHKLPLFLHCRNAK-------SDFIEIMKEYAPKLPRKGVIHS 173 (487)
Q Consensus 102 ~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~-LA~el~lPViIH~r~a~-------~d~l~iLk~~~~~~~~~~v~H~ 173 (487)
+.++|+|=+|=.-. + ....-|..++. ++++.++|+.+|+-... ..+++.| ..+. +-|=|+
T Consensus 288 ~~vvGfDL~G~E~~--g-----~pl~~f~~~~~~~~~~~gl~~t~HAGE~~~~g~~~d~nl~dAI-lLg~----~RIGHG 355 (479)
T TIGR01431 288 DFVAGFDLVGQEDK--G-----RSLLDFIDALLGPSDKEKLPYFFHAGETNWQGTTVDENLIDAL-LLNT----TRIGHG 355 (479)
T ss_pred CeEEEEeccCCCCC--C-----CCHHHHHHHHHHHHHhCCCCEEEecCCcCCCCCCchhHHHHHH-HcCC----ccccCc
Confidence 34677766663310 1 12334455554 55568999999998653 4566666 3333 456677
Q ss_pred cCC--CHHHHHHHHcCccchhHhhhcCCCceeec
Q psy4448 174 FDG--TPFQAVDSLKTKENLETVKSIPEDRLLLE 205 (487)
Q Consensus 174 FsG--~~~~a~~~l~~~~g~e~v~~iP~driLlE 205 (487)
|+- +++.++.+.+. +. .|..+|..++++-
T Consensus 356 ~~l~~~P~l~~~vke~--~I-~lEvCP~SN~~l~ 386 (479)
T TIGR01431 356 FALVKHPLVLQMLKER--NI-AVEVNPISNQVLQ 386 (479)
T ss_pred ccccCCHHHHHHHHHh--CC-eEEECccchhhhc
Confidence 774 46666666554 22 3445566555443
No 367
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=23.67 E-value=6.3e+02 Score=23.88 Aligned_cols=105 Identities=13% Similarity=0.143 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHhcCCCEEEEECCCHHhHHHHHHHHhcCCC-eEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEE
Q psy4448 27 EPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDER-LYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVV 105 (487)
Q Consensus 27 ~~d~~~vl~ra~~~GV~~ii~v~~~~~~~~~~~~la~~~~~-v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vv 105 (487)
.++++++++++.+.|+..+++ .|...+.+.+..+..+- +...+| .|..... .+.-..+.++.++. .+.
T Consensus 16 ~~~i~~~~~~a~~~~~~av~v---~p~~v~~~~~~l~~~~~~v~~~~~-fp~g~~~----~~~k~~eve~A~~~---GAd 84 (203)
T cd00959 16 EEDIRKLCDEAKEYGFAAVCV---NPCFVPLAREALKGSGVKVCTVIG-FPLGATT----TEVKVAEAREAIAD---GAD 84 (203)
T ss_pred HHHHHHHHHHHHHcCCCEEEE---cHHHHHHHHHHcCCCCcEEEEEEe-cCCCCCc----HHHHHHHHHHHHHc---CCC
Confidence 467778899999988876654 35555544444443333 344444 3665421 13334556666664 233
Q ss_pred EEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEE
Q psy4448 106 AFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFL 145 (487)
Q Consensus 106 aIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViI 145 (487)
+| ++-+++........+...+-+.+..+.|. ++|+.+
T Consensus 85 ev-dvv~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkv 121 (203)
T cd00959 85 EI-DMVINIGALKSGDYEAVYEEIAAVVEACG--GAPLKV 121 (203)
T ss_pred EE-EEeecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEE
Confidence 34 34444322112234556666677777665 777644
No 368
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=23.52 E-value=6.7e+02 Score=24.14 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhhCCCCEEEEec----------cchHHHHHHHHHhC
Q psy4448 251 VYFRKQLDLSVTHKLPLFLHCR----------NAKSDFIEIMKEYA 286 (487)
Q Consensus 251 ~~F~~ql~lA~~~~lPl~iH~r----------~a~~~~l~il~~~~ 286 (487)
+.+++-.++|++.|..+.++.. ...+++++++++..
T Consensus 123 ~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~l~t~~~~~~li~~v~ 168 (254)
T TIGR03234 123 ENLRYAADALDRIGLTLLIEPINSFDMPGFFLTTTEQALAVIDDVG 168 (254)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCcccCCCChhcCHHHHHHHHHHhC
Confidence 4567778899999999999863 46678888888764
No 369
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.48 E-value=7e+02 Score=24.32 Aligned_cols=126 Identities=13% Similarity=-0.023 Sum_probs=0.0
Q ss_pred hHHHHHHHHhcCCCeEEEeecCC----CCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCC---hHHHH
Q psy4448 54 DSISSLKLAQSDERLYSTVGCHP----TRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCP---VETQL 126 (487)
Q Consensus 54 ~~~~~~~la~~~~~v~~avGiHP----~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~---~e~Q~ 126 (487)
++++.++.+++.+.=..=+.+++ .....+. +...+.+.+.+.+..=.+.+++-.|...+.....+ ++...
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~---~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~ 93 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESDERLARLDWS---KEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERAL 93 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCcccccccccCC---HHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHH
Q ss_pred HHHHHHHHHhhhCCCCEEEEe-----------------cCchHHHHHHHHHhCCCCCCcEEEEe----cCCCHHHHHHHH
Q psy4448 127 KYFRKQLDLSVTHKLPLFLHC-----------------RNAKSDFIEIMKEYAPKLPRKGVIHS----FDGTPFQAVDSL 185 (487)
Q Consensus 127 ~vF~~qL~LA~el~lPViIH~-----------------r~a~~d~l~iLk~~~~~~~~~~v~H~----FsG~~~~a~~~l 185 (487)
+.|++.+++|++++.+++.-. ++...++.++.++++. ...+|- |..+.+.+..++
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv----~l~lE~~~~~~~~~~~~~~~l~ 169 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQV----MLAVEIMDTPFMNSISKWKKWD 169 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCC----EEEEEecCccccCCHHHHHHHH
Q ss_pred c
Q psy4448 186 K 186 (487)
Q Consensus 186 ~ 186 (487)
+
T Consensus 170 ~ 170 (284)
T PRK13210 170 K 170 (284)
T ss_pred H
No 370
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=23.34 E-value=8.2e+02 Score=25.11 Aligned_cols=139 Identities=14% Similarity=0.148 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHhcCCCEEEEECCCH--------HhHHHHHHHHhcC---CC--eEEEeecCCCCCCCcCCCchhhHHHH
Q psy4448 27 EPDIDHVLNRAWNAGLEKIIVTGTNV--------EDSISSLKLAQSD---ER--LYSTVGCHPTRCSEFENDPEGYLQSL 93 (487)
Q Consensus 27 ~~d~~~vl~ra~~~GV~~ii~v~~~~--------~~~~~~~~la~~~---~~--v~~avGiHP~~~~~~~~~~~~~l~~L 93 (487)
.+.++++++++++.|++.++++..-| ..++.+.+..++. +. +...+.-||.++ +.+.+.+
T Consensus 99 ~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~~~~~~~~~~~~~~~~~~~~i~~~~~~p~yi-------~a~~~~i 171 (316)
T PF00762_consen 99 PPSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSYLDEVERALKKSRPNPKVRFIPSFYDHPAYI-------EALAERI 171 (316)
T ss_dssp SSBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHHHHHHHHHHHHTHSSSEEEEE---TT-HHHH-------HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHHHHHHHHHHHhcCCCCeEEEeCCccCCHHHH-------HHHHHHH
Confidence 67899999999999999999886533 2222333333333 21 333334444333 2334555
Q ss_pred HHHHHhc---CCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCC---EEEEecCc--------hHHHHHHHH
Q psy4448 94 DKIIKEG---GKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLP---LFLHCRNA--------KSDFIEIMK 159 (487)
Q Consensus 94 ~~ll~~~---~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lP---ViIH~r~a--------~~d~l~iLk 159 (487)
.+.+... .+..+..---||.-.........-+.++.+..-.+|..++.+ +...|+-+ .+++++-|.
T Consensus 172 ~~~l~~~~~~~~~~llfSaHglP~~~~~~~GdpY~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~ 251 (316)
T PF00762_consen 172 REALERFPRGEPDHLLFSAHGLPQRYVEDKGDPYPAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELA 251 (316)
T ss_dssp HHHHTTS-HCCCEEEEEEEE--BHHHHTCCT-SHHHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHH
T ss_pred HHHHHhcCCCCCCEEEEccCCCCccccccCCCChHHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHH
Confidence 5555543 112333445666543321111234555556666677777765 44555532 456666666
Q ss_pred HhCCCCCCcEEEEecC
Q psy4448 160 EYAPKLPRKGVIHSFD 175 (487)
Q Consensus 160 ~~~~~~~~~~v~H~Fs 175 (487)
+.+. .++++=+.+
T Consensus 252 ~~G~---~~V~v~p~g 264 (316)
T PF00762_consen 252 KEGV---KRVVVVPPG 264 (316)
T ss_dssp HCT----SEEEEEETT
T ss_pred hcCC---CeEEEECCc
Confidence 6653 256666644
No 371
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=23.18 E-value=5.5e+02 Score=23.36 Aligned_cols=69 Identities=17% Similarity=0.109 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEecC-chHHHHHHHHHh
Q psy4448 89 YLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN-AKSDFIEIMKEY 161 (487)
Q Consensus 89 ~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~-a~~d~l~iLk~~ 161 (487)
.++.|.+++.++....+. |||++.- +.......+.+=..-=.|.+.+++||++|.-+ ...+..+.|.+.
T Consensus 41 ~~~~l~~li~~~~~~~vV---VGlP~~m-~g~~~~~~~~~~~f~~~L~~r~~lpv~l~DERltTv~A~~~L~~~ 110 (141)
T COG0816 41 DFNALLKLVKEYQVDTVV---VGLPLNM-DGTEGPRAELARKFAERLKKRFNLPVVLWDERLSTVEAERMLIEA 110 (141)
T ss_pred hHHHHHHHHHHhCCCEEE---EecCcCC-CCCcchhHHHHHHHHHHHHHhcCCCEEEEcCccCHHHHHHHHHHc
Confidence 577888888886444444 6787643 22222233333333344567789999999966 455566666654
No 372
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=23.15 E-value=1.1e+02 Score=28.30 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=27.8
Q ss_pred CCCChhhhHHHHHHHHHHhhhC----CCCEEEEeccchHHHHHH
Q psy4448 242 KSRNEPANIVYFRKQLDLSVTH----KLPLFLHCRNAKSDFIEI 281 (487)
Q Consensus 242 ~~~n~P~Q~~~F~~ql~lA~~~----~lPl~iH~r~a~~~~l~i 281 (487)
+..+...++..|...++-+... +.||.|||+...+..=-+
T Consensus 72 ~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~ 115 (166)
T PTZ00242 72 GAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPIL 115 (166)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHH
Confidence 3445555677777777766644 999999998877764433
No 373
>PRK05826 pyruvate kinase; Provisional
Probab=23.14 E-value=4.3e+02 Score=28.90 Aligned_cols=103 Identities=18% Similarity=0.205 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHhcCCCEEEEECC-CHHhHHHHHHHHhcCC--CeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCE
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTGT-NVEDSISSLKLAQSDE--RLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKV 104 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~~-~~~~~~~~~~la~~~~--~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~v 104 (487)
.|.+ .++++.+.|++.+++.-+ +.++.+.+.++.+... .+...+= .. ..+.++.|++++..-..=.
T Consensus 174 ~D~~-~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiak--------IE--t~eav~nldeI~~~~DgIm 242 (465)
T PRK05826 174 KDKA-DIKFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAK--------IE--RAEAVDNIDEIIEASDGIM 242 (465)
T ss_pred hhHH-HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEE--------Ec--CHHHHHhHHHHHHHcCEEE
Confidence 3443 467889999998776644 6777777777655432 2221111 11 1244677777776521223
Q ss_pred EEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEe
Q psy4448 105 VAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHC 147 (487)
Q Consensus 105 vaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~ 147 (487)
+|=|-.|.+... +.=..+-++.++.|++.++|+++=+
T Consensus 243 IgrgDLg~elg~------~~v~~~qk~Ii~~c~~~gKpvi~AT 279 (465)
T PRK05826 243 VARGDLGVEIPD------EEVPGLQKKIIRKAREAGKPVITAT 279 (465)
T ss_pred ECcchhhhhcCc------HhHHHHHHHHHHHHHHcCCCEEEEC
Confidence 455555665431 2222344788999999999999754
No 374
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=22.96 E-value=8e+02 Score=25.87 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCCC
Q psy4448 374 IVQILEIVAAVRGVEREKLGPIIHQNTLRLFFPH 407 (487)
Q Consensus 374 l~~v~~~iA~ikg~~~~~va~~~~~N~~rlf~~~ 407 (487)
+...++.+..-..++.+++.+.++.|..++|++.
T Consensus 345 l~~l~~~~v~~~~~~~~~~~~~~t~~pa~~~gl~ 378 (454)
T TIGR02033 345 MTLLFDEGVATGRITLEKFVELTSTNPAKIFNMY 378 (454)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHhhHHHHHcCCC
Confidence 3333333333345899999999999999999985
No 375
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=22.77 E-value=1.1e+03 Score=26.51 Aligned_cols=41 Identities=17% Similarity=0.072 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHhcCCCEEEEEC----------CCHHhHHHHHHHHhcCCCe
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTG----------TNVEDSISSLKLAQSDERL 68 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~----------~~~~~~~~~~~la~~~~~v 68 (487)
.+.-.++....++|+..+=+.| .+.+.|+++.++.+..|++
T Consensus 26 ~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~ 76 (592)
T PRK09282 26 EDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNT 76 (592)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCC
Confidence 4555677788888987543321 2456677777776665653
No 376
>PRK00957 methionine synthase; Provisional
Probab=22.68 E-value=7.9e+02 Score=24.70 Aligned_cols=90 Identities=11% Similarity=0.173 Sum_probs=55.8
Q ss_pred CCCCEEEEecCchHHHHHHHHHhCCCCCCcEEEEecCCCHHHHHHHHc---Ccc----c-------------------hh
Q psy4448 139 HKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLK---TKE----N-------------------LE 192 (487)
Q Consensus 139 l~lPViIH~r~a~~d~l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~---~~~----g-------------------~e 192 (487)
.+.++++|+-+..+.+++.|.+.+. .++.--|+++.+.++.+-+ .++ | .+
T Consensus 189 i~~~v~lH~CG~~~~i~~~l~~~~v----d~i~ld~~~~~~~l~~l~~~~~~~k~l~~GvId~~~~~~e~~e~v~~~i~~ 264 (305)
T PRK00957 189 LNVPVAMHVCGDVSNIIDDLLKFNV----DILDHEFASNKKNLEILEEKDLIGKKIGFGCVDTKSKSVESVDEIKALIEE 264 (305)
T ss_pred hCCceEEEECCCcHHHHHHHHhCCC----CEEEEeecCCCCCHHHHhhhccCCCEEEEEEEcCCCCCCCCHHHHHHHHHH
Confidence 4788999999888888888866543 3444344443322322221 110 1 14
Q ss_pred HhhhcCCCceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccccCCCChhhhHHHHHHHHHHhhhC
Q psy4448 193 TVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVYFRKQLDLSVTH 263 (487)
Q Consensus 193 ~v~~iP~driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~P~Q~~~F~~ql~lA~~~ 263 (487)
+++.+|.+|+.+=+||.+.. .++..+.+-++.-.+.|++.
T Consensus 265 ~~~~~~~~~l~lsp~CGl~~-------------------------------~~~~~~~~kL~~l~~aa~~~ 304 (305)
T PRK00957 265 GIEILGAENILIDPDCGMRM-------------------------------LPRDVAFEKLKNMVEAAREI 304 (305)
T ss_pred HHHhcCHHHEEECCCcCCCc-------------------------------CCHHHHHHHHHHHHHHHHHh
Confidence 56678899999999998742 23556667777777777653
No 377
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=22.62 E-value=4.8e+02 Score=26.58 Aligned_cols=40 Identities=13% Similarity=0.272 Sum_probs=28.3
Q ss_pred ChHHHHHHHHHHHHHhhhCCCCEEEEecC-chHHHHHHHHHh
Q psy4448 121 PVETQLKYFRKQLDLSVTHKLPLFLHCRN-AKSDFIEIMKEY 161 (487)
Q Consensus 121 ~~e~Q~~vF~~qL~LA~el~lPViIH~r~-a~~d~l~iLk~~ 161 (487)
+.+.++++.+...+.+. -+.||++|+-. ..++++++.+..
T Consensus 59 t~eEr~~v~~~~~~~~~-grvpvi~Gv~~~~t~~ai~~a~~A 99 (309)
T cd00952 59 TWEEKQAFVATVVETVA-GRVPVFVGATTLNTRDTIARTRAL 99 (309)
T ss_pred CHHHHHHHHHHHHHHhC-CCCCEEEEeccCCHHHHHHHHHHH
Confidence 46788888888888764 46888888863 566666666544
No 378
>PLN02727 NAD kinase
Probab=22.48 E-value=77 Score=37.42 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=46.5
Q ss_pred CHHHHHHHHcCccchhHhhhcCCCceeeccCCCCCC---CCCCCcccchhcccchhhhhhccCCccccCCCChhhhHHHH
Q psy4448 177 TPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCE---VKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVYF 253 (487)
Q Consensus 177 ~~~~a~~~l~~~~g~e~v~~iP~driLlETD~P~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~P~Q~~~F 253 (487)
+++.++++.+. |+..|=.+-.|. |.|.||.. -....+|+.|++-|..- .....+.|++-|
T Consensus 270 spe~la~LA~~--GfKTIINLRpd~---E~~q~~~~ee~eAae~~GL~yVhIPVs~------------~~apt~EqVe~f 332 (986)
T PLN02727 270 TEEGLKWLLEK--GFKTIVDLRAEI---VKDNFYQAAVDDAISSGKIEVVKIPVEV------------RTAPSAEQVEKF 332 (986)
T ss_pred CHHHHHHHHHC--CCeEEEECCCCC---cCCCchhHHHHHHHHHcCCeEEEeecCC------------CCCCCHHHHHHH
Confidence 55556666666 654443332232 34666631 11123466666543221 233466888888
Q ss_pred HHHH-HHhhhCCCCEEEEeccchHH
Q psy4448 254 RKQL-DLSVTHKLPLFLHCRNAKSD 277 (487)
Q Consensus 254 ~~ql-~lA~~~~lPl~iH~r~a~~~ 277 (487)
.+.+ + ++..||.+||+...+.
T Consensus 333 a~~l~~---slpkPVLvHCKSGarR 354 (986)
T PLN02727 333 ASLVSD---SSKKPIYLHSKEGVWR 354 (986)
T ss_pred HHHHHh---hcCCCEEEECCCCCch
Confidence 8887 4 7899999999876633
No 379
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=22.28 E-value=6.6e+02 Score=26.40 Aligned_cols=62 Identities=11% Similarity=0.231 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhhCCCCEEEEecCc------hHHHHHHHHHhCCCCC-CcEEEEecCC-CHHHHHHHHcC
Q psy4448 126 LKYFRKQLDLSVTHKLPLFLHCRNA------KSDFIEIMKEYAPKLP-RKGVIHSFDG-TPFQAVDSLKT 187 (487)
Q Consensus 126 ~~vF~~qL~LA~el~lPViIH~r~a------~~d~l~iLk~~~~~~~-~~~v~H~FsG-~~~~a~~~l~~ 187 (487)
.+..+..++.|.+.+-||||-.-.. .+.+..+++......+ .++++|-=-| +.+..+++++.
T Consensus 28 ~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~~ 97 (347)
T PRK13399 28 MEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDHGNSPATCQSAIRS 97 (347)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHhc
Confidence 4557788889999999999876432 1223334433321111 3577776444 77888888888
No 380
>PLN02762 pyruvate kinase complex alpha subunit
Probab=22.18 E-value=5.8e+02 Score=28.31 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHhcCCCEEEEECC--CHHhHHHHHHHHhcCCCeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEE
Q psy4448 28 PDIDHVLNRAWNAGLEKIIVTGT--NVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVV 105 (487)
Q Consensus 28 ~d~~~vl~ra~~~GV~~ii~v~~--~~~~~~~~~~la~~~~~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vv 105 (487)
.|.++ |.-+-+.||+.+ ..++ +.++...+.++..+... |-|+.-+.... ..+.++.|.+++.....=.+
T Consensus 204 kD~~d-i~f~~~~~vD~i-a~SFVr~a~Dv~~~r~~l~~~g~-----~~~~~IiAKIE--~~~av~nl~eIi~~sDgiMV 274 (509)
T PLN02762 204 KDWLD-IDFGISEGVDFI-AVSFVKSAEVIKHLKSYIAARSR-----DSDIGVIAKIE--SLDSLKNLEEIIRASDGAMV 274 (509)
T ss_pred HHHHH-HHHHHHcCCCEE-EECCCCCHHHHHHHHHHHHHcCC-----CCCceEEEEeC--CHHHHHHHHHHHHhcCEEEE
Confidence 45544 456778899854 4444 67777777777654311 11333333221 23457788888876434467
Q ss_pred EEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEe
Q psy4448 106 AFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHC 147 (487)
Q Consensus 106 aIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~ 147 (487)
|=|-.|+.... . .-...|+ +.+..|++.++||++=+
T Consensus 275 ARGDLGvEip~-e-~vp~~QK----~II~~c~~~gKPVIvAT 310 (509)
T PLN02762 275 ARGDLGAQIPL-E-QVPSVQE----KIVRLCRQLNKPVIVAS 310 (509)
T ss_pred ecCccccccCH-H-HhHHHHH----HHHHHHHHhCCCEEEEC
Confidence 88989988532 1 1123344 45788999999999754
No 381
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=22.09 E-value=1.4e+02 Score=29.91 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=32.2
Q ss_pred hhCCCC--EEEEecCchH-HHHHHHHHhCCCCCCcEEEE---ecCCCHHHHHHHHcC
Q psy4448 137 VTHKLP--LFLHCRNAKS-DFIEIMKEYAPKLPRKGVIH---SFDGTPFQAVDSLKT 187 (487)
Q Consensus 137 ~el~lP--ViIH~r~a~~-d~l~iLk~~~~~~~~~~v~H---~FsG~~~~a~~~l~~ 187 (487)
...++| +++||-.+.+ ++++=+.+.+. ...-|| .|+|..+.++++-+.
T Consensus 86 ~~~~rpg~iv~HcSga~~~~il~~~gr~g~---~~asiHP~f~Fsgl~edl~rl~d~ 139 (289)
T COG5495 86 TSLNRPGTIVAHCSGANGSGILAPLGRQGC---IPASIHPAFSFSGLDEDLSRLKDT 139 (289)
T ss_pred hcccCCCeEEEEccCCCchhhhhhhhhcCC---cceeecccccccCCHHHHHhCccc
Confidence 345666 9999998755 56666655433 134555 599999998876554
No 382
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=22.04 E-value=7.8e+02 Score=24.39 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=65.2
Q ss_pred eEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCCChHHH-------------HHHHHHHHH
Q psy4448 68 LYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQ-------------LKYFRKQLD 134 (487)
Q Consensus 68 v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~~~~~~~e~Q-------------~~vF~~qL~ 134 (487)
.|.++| .|. .+..++.+..+.+. .+-.| |+|+.|+-.-....-.| ..+|+..-+
T Consensus 14 ~y~~aG-~P~--------~~~~~~~~~~l~~~---Gad~i-ElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ 80 (256)
T TIGR00262 14 PFVTAG-DPT--------LETSLEIIKTLIEA---GADAL-ELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKK 80 (256)
T ss_pred EEEeCC-CCC--------HHHHHHHHHHHHHc---CCCEE-EECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 366777 452 23445556665553 57778 99999975322222233 245555555
Q ss_pred Hhhh-CCCCEEEEecCc-------hHHHHHHHHHhCCCCCCcEEEEecCCCHHHHHHHHcCccchhHhhhcCCCceeecc
Q psy4448 135 LSVT-HKLPLFLHCRNA-------KSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPEDRLLLET 206 (487)
Q Consensus 135 LA~e-l~lPViIH~r~a-------~~d~l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~~~~g~e~v~~iP~driLlET 206 (487)
+.++ .+.|++ |.--. .+++++-+++.+.. ..++|- -..++..++++. ++...++-+++=+
T Consensus 81 ir~~~~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvd---gviipD--lp~ee~~~~~~~------~~~~gl~~i~lv~ 148 (256)
T TIGR00262 81 VRQKHPNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVD---GVLVAD--LPLEESGDLVEA------AKKHGVKPIFLVA 148 (256)
T ss_pred HHhcCCCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCC---EEEECC--CChHHHHHHHHH------HHHCCCcEEEEEC
Confidence 6555 688987 66442 36778888877652 467773 344565555543 4444555554433
No 383
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=21.98 E-value=7.6e+02 Score=24.20 Aligned_cols=75 Identities=20% Similarity=0.176 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHhhhCCCCEE--EEec------------cchHHHHHHHHHhCCCCCCCcEEEEeeCCcccccccccchh
Q psy4448 248 ANIVYFRKQLDLSVTHKLPLF--LHCR------------NAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKTKE 313 (487)
Q Consensus 248 ~Q~~~F~~ql~lA~~~~lPl~--iH~r------------~a~~~~l~il~~~~~~~~~~gv~hsfsG~~~~~~~~~k~~~ 313 (487)
.+..+-+.-+++|+++|.--+ |-.. .+..++.+.|+..... ...|...|++| ..+.
T Consensus 91 ~~~~~a~~il~~~~~~gv~~Ii~Lgg~~~~~~~~~v~~~at~~~~~~~l~~~~~~-~~~g~i~G~~g------~ll~--- 160 (238)
T TIGR00161 91 VVYDMTNAIVEWMVRNNSRELISFNGMVVREKSQPVFGAANSQELIERLKDLIEI-FPFGNLNGISG------TLLT--- 160 (238)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEeCccCCCCCCcEEEEECCHHHHHHHHHhcCc-CCCCEEechhH------HHHH---
Confidence 467888899999999887533 2222 2456788888875322 33577788887 2221
Q ss_pred hHHHhhhCCCCceEeccCCC
Q psy4448 314 NLETVKSIPEDRLLLETDCP 333 (487)
Q Consensus 314 ~~e~v~~iPldrlLlETD~P 333 (487)
.-..+.+|-=-||.||.+.
T Consensus 161 -~a~~~gi~~i~Ll~et~~~ 179 (238)
T TIGR00161 161 -RCAVNDIPAICLLAETLGP 179 (238)
T ss_pred -HHHHcCCCEEEEEEeCCCC
Confidence 1244678888899999664
No 384
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.97 E-value=46 Score=29.64 Aligned_cols=42 Identities=24% Similarity=0.427 Sum_probs=29.1
Q ss_pred EeeCCCCCCC---CCCChHHHHHHHHHHHHHhhhCCCCEEEEecCchH
Q psy4448 108 GEFGLDYDRV---QYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKS 152 (487)
Q Consensus 108 GEIGLD~~~~---~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~ 152 (487)
+..||+|..+ ....-+.+.+.|.+.|+- ..-||.-|||....
T Consensus 55 ~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~e---aegPVlayCrsGtR 99 (130)
T COG3453 55 EAAGLTYTHIPVTGGGITEADVEAFQRALDE---AEGPVLAYCRSGTR 99 (130)
T ss_pred HhcCCceEEeecCCCCCCHHHHHHHHHHHHH---hCCCEEeeecCCch
Confidence 3589998653 123346677777777664 46899999998765
No 385
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=21.95 E-value=2.6e+02 Score=29.02 Aligned_cols=35 Identities=6% Similarity=-0.015 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCCC
Q psy4448 373 NIVQILEIVAAVRGVEREKLGPIIHQNTLRLFFPH 407 (487)
Q Consensus 373 ~l~~v~~~iA~ikg~~~~~va~~~~~N~~rlf~~~ 407 (487)
.+...++.+.+-..++.+++.+.++.|..++|++.
T Consensus 291 ~l~~~~~~~~~~~~~~~~~~~~~~t~npA~~lgl~ 325 (374)
T cd01317 291 ALPLLWTLLVKGGLLTLPDLIRALSTNPAKILGLP 325 (374)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCC
Confidence 44555555555456899999999999999999986
No 386
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=21.91 E-value=9.6e+02 Score=25.39 Aligned_cols=35 Identities=11% Similarity=0.113 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhhCC-CCEEEEeccchHHHHHHHHHh
Q psy4448 251 VYFRKQLDLSVTHK-LPLFLHCRNAKSDFIEIMKEY 285 (487)
Q Consensus 251 ~~F~~ql~lA~~~~-lPl~iH~r~a~~~~l~il~~~ 285 (487)
+.+++..++|.+++ +|+.+|+....+++-.+++.+
T Consensus 208 e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~ 243 (429)
T cd01303 208 ELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELF 243 (429)
T ss_pred HHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHc
Confidence 45888899999999 999999998887766666554
No 387
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=21.88 E-value=6.5e+02 Score=26.19 Aligned_cols=61 Identities=21% Similarity=0.255 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhhCCCCEEEEecCc---------hHHHHHHHHHhCCCC--CCcEEEEecCC-CHHHHHHHHcC
Q psy4448 127 KYFRKQLDLSVTHKLPLFLHCRNA---------KSDFIEIMKEYAPKL--PRKGVIHSFDG-TPFQAVDSLKT 187 (487)
Q Consensus 127 ~vF~~qL~LA~el~lPViIH~r~a---------~~d~l~iLk~~~~~~--~~~~v~H~FsG-~~~~a~~~l~~ 187 (487)
+..+..++.|.+.+-||||-.-.. ...+...++.+.... ..++++|-=-| +.+..+++++.
T Consensus 35 e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~~ 107 (321)
T PRK07084 35 EQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGCPIPIVLHLDHGDSFELCKDCIDS 107 (321)
T ss_pred HHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHc
Confidence 556777888888888888765331 112222222221100 13466765433 77788888887
No 388
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=21.87 E-value=60 Score=25.43 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=16.5
Q ss_pred cchhHhhhcCCCceeeccCCCC
Q psy4448 189 ENLETVKSIPEDRLLLETDCPW 210 (487)
Q Consensus 189 ~g~e~v~~iP~driLlETD~P~ 210 (487)
.|.+.+......+|.+|||+=-
T Consensus 11 ~al~~a~~~g~~~i~v~sDs~~ 32 (87)
T PF13456_consen 11 EALQLAWELGIRKIIVESDSQL 32 (87)
T ss_dssp HHHHHHHCCT-SCEEEEES-HH
T ss_pred HHHHHHHHCCCCEEEEEecCcc
Confidence 3677788899999999999943
No 389
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=21.79 E-value=2.4e+02 Score=34.14 Aligned_cols=55 Identities=13% Similarity=0.270 Sum_probs=36.9
Q ss_pred cEEEecccCCCcccccccccCCCCCCCCHHHHHHHHHhcCCCEEEEECC-CHHhHHHHHHHHhcC
Q psy4448 2 KYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGT-NVEDSISSLKLAQSD 65 (487)
Q Consensus 2 ~~iD~H~HL~~~~f~~~~~g~~~~~~~d~~~vl~ra~~~GV~~ii~v~~-~~~~~~~~~~la~~~ 65 (487)
.++|.|||.... + -.| ...+++++++|++.|...+.+.-. +........+.++++
T Consensus 4 ~fv~LHvHT~yS-l---Ldg-----~~~~~elv~~A~~~G~~avAiTDh~~l~g~~~f~~~~~~~ 59 (1046)
T PRK05672 4 PYAELHCHSNFS-F---LDG-----ASHPEELVERAARLGLRALAITDECGLAGVVRAAEAAKEL 59 (1046)
T ss_pred ceeeccccccCc-c---ccc-----CCCHHHHHHHHHHcCCCEEEEEeCCcchhHHHHHHHHHHC
Confidence 489999998642 1 123 578999999999999987766522 344444445555554
No 390
>PRK05926 hypothetical protein; Provisional
Probab=21.65 E-value=60 Score=34.30 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=17.0
Q ss_pred ecc-CCcccccCCCcCC---ChhHHHHhhHH
Q psy4448 430 YST-VGCHPTRCSEFEN---DPEGYLQSLDK 456 (487)
Q Consensus 430 f~~-~~~~~~~c~~~~~---~~~~~~~~l~~ 456 (487)
|++ |...|.||. |.. .++.|.+..+.
T Consensus 74 ~Tn~C~~dC~FCa-f~~~~~~~~~~~ls~ee 103 (370)
T PRK05926 74 PTNFCQFNCTFCS-FYAKPGDPKGWFYTPDQ 103 (370)
T ss_pred cCCCCCCCCCccc-cccCCCCcccccCCHHH
Confidence 554 888899999 532 35666654543
No 391
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=21.64 E-value=2e+02 Score=30.06 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=34.5
Q ss_pred HHHHHHHhhhCCCCEEEEecCc----hHHHHHHHHHhCCCCCCcEEEEecCC
Q psy4448 129 FRKQLDLSVTHKLPLFLHCRNA----KSDFIEIMKEYAPKLPRKGVIHSFDG 176 (487)
Q Consensus 129 F~~qL~LA~el~lPViIH~r~a----~~d~l~iLk~~~~~~~~~~v~H~FsG 176 (487)
.--.|+...+.++|++|=+--+ .++.++++++++.. .-.++||-|.
T Consensus 136 ~~plik~iA~~~kPiIlSTGma~~~ei~~av~~~r~~g~~--~i~LLhC~s~ 185 (347)
T COG2089 136 DLPLIKYIAKKGKPIILSTGMATIEEIEEAVAILRENGNP--DIALLHCTSA 185 (347)
T ss_pred ChHHHHHHHhcCCCEEEEcccccHHHHHHHHHHHHhcCCC--CeEEEEecCC
Confidence 3456788888899999988765 45788889988763 2478999764
No 392
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=21.62 E-value=40 Score=31.48 Aligned_cols=31 Identities=16% Similarity=0.349 Sum_probs=20.0
Q ss_pred HHHHHHhhhCCCCEEEEeccchHHHHHHHHH
Q psy4448 254 RKQLDLSVTHKLPLFLHCRNAKSDFIEIMKE 284 (487)
Q Consensus 254 ~~ql~lA~~~~lPl~iH~r~a~~~~l~il~~ 284 (487)
..-++.|++-++||+||.--.+----..|.+
T Consensus 27 ~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~ 57 (163)
T PF03190_consen 27 EEALEKAKKENKPIFLSIGYSWCHWCHVMER 57 (163)
T ss_dssp HHHHHHHHHHT--EEEEEE-TT-HHHHHHHH
T ss_pred HHHHHHHHhcCCcEEEEEEecCCcchhhhcc
Confidence 4678999999999999987666554444443
No 393
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=21.58 E-value=4.9e+02 Score=26.58 Aligned_cols=45 Identities=20% Similarity=0.101 Sum_probs=34.1
Q ss_pred CEEEEEeeCCCCCC----CCCCChHHHHHHHHHHHHHhhhCCCCEEEEe
Q psy4448 103 KVVAFGEFGLDYDR----VQYCPVETQLKYFRKQLDLSVTHKLPLFLHC 147 (487)
Q Consensus 103 ~vvaIGEIGLD~~~----~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~ 147 (487)
+-+.|||+|-+-.- ...+..+.|+..+++.+.--+..|.-+.+-.
T Consensus 232 k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~G~d~fvfe 280 (305)
T COG5309 232 KTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSCGYDVFVFE 280 (305)
T ss_pred ccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhccCccEEEee
Confidence 57899999987521 1235689999999999988888777776544
No 394
>KOG4549|consensus
Probab=21.47 E-value=2.5e+02 Score=25.38 Aligned_cols=60 Identities=12% Similarity=0.078 Sum_probs=39.0
Q ss_pred cEEEecccCCCcccccccc--cCCC---CCCCCHHHHHHHHHhcCCCEEEEE-CCCHHhHHHHHHHHhc
Q psy4448 2 KYIDIGANLKDAMYEGFYS--SKNQ---KHEPDIDHVLNRAWNAGLEKIIVT-GTNVEDSISSLKLAQS 64 (487)
Q Consensus 2 ~~iD~H~HL~~~~f~~~~~--g~~~---~~~~d~~~vl~ra~~~GV~~ii~v-~~~~~~~~~~~~la~~ 64 (487)
.+||+|.|--..+| |+ |++. -.-+|+.-+|...++.||+-++.- +..++-....++..+.
T Consensus 19 ~~vdthl~~pfkP~---k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkv 84 (144)
T KOG4549|consen 19 RLVDTHLDYPFKPF---KCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKV 84 (144)
T ss_pred EEEEeccccccccc---ccCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhcc
Confidence 48999998765444 32 2111 123578889999999999755443 4567777777776543
No 395
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=21.34 E-value=8.4e+02 Score=24.50 Aligned_cols=53 Identities=17% Similarity=0.178 Sum_probs=33.4
Q ss_pred EEEEEeeCCCCCCCCCCChHHHHHHHHHHHHHhhhCCCCEEEEec-CchHHHHHHHHHh
Q psy4448 104 VVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCR-NAKSDFIEIMKEY 161 (487)
Q Consensus 104 vvaIGEIGLD~~~~~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r-~a~~d~l~iLk~~ 161 (487)
++..|-.|==++ -+.+..+++++...+.+.. +.||+.|+- ...++++++.+..
T Consensus 39 i~~~GstGE~~~----Lt~eEr~~~~~~~~~~~~~-~~pvi~gv~~~~t~~~i~la~~a 92 (290)
T TIGR00683 39 LYVGGSTGENFM----LSTEEKKEIFRIAKDEAKD-QIALIAQVGSVNLKEAVELGKYA 92 (290)
T ss_pred EEECCccccccc----CCHHHHHHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHH
Confidence 444455554321 2467778888888887653 678888874 4566676666543
No 396
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=21.31 E-value=1.5e+02 Score=25.68 Aligned_cols=59 Identities=12% Similarity=0.138 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHhhhCCCCEEEEecCchHHHHHHHHHhCCCCCCcEEEEecCCCHHHHHHHHc
Q psy4448 120 CPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLK 186 (487)
Q Consensus 120 ~~~e~Q~~vF~~qL~LA~el~lPViIH~r~a~~d~l~iLk~~~~~~~~~~v~H~FsG~~~~a~~~l~ 186 (487)
.+...+.......++.+.+.+.||.|||..+....-.++--| ++..++-+.+.|.++++
T Consensus 58 ~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~y--------l~~~~~~~~~~A~~~v~ 116 (138)
T smart00195 58 TKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAY--------LMKYRNLSLNDAYDFVK 116 (138)
T ss_pred CChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHH--------HHHHhCCCHHHHHHHHH
No 397
>COG3572 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]
Probab=21.19 E-value=3e+02 Score=29.53 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=28.6
Q ss_pred CCeEEEeecCCCCCCCcC-CCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCC
Q psy4448 66 ERLYSTVGCHPTRCSEFE-NDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDR 116 (487)
Q Consensus 66 ~~v~~avGiHP~~~~~~~-~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~ 116 (487)
.--+..+|+||.+..... -.+...+..|.+++. + +|-+|||-..
T Consensus 131 gl~fvGlG~~Pkw~r~e~p~mpk~RY~iM~~Ymp----k---vg~~glDMm~ 175 (456)
T COG3572 131 GLGFVGLGGSPKWTRAEVPVMPKSRYAIMTRYMP----K---VGVKGLDMMT 175 (456)
T ss_pred CCceEeecCCCccccCcCCCCCchHHHHHHHHHh----h---cCCcchhhhh
Confidence 445889999996643221 113345778888884 3 7779998643
No 398
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=21.15 E-value=3.9e+02 Score=27.07 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=17.0
Q ss_pred HHhhhCCCCEEEEe--ccchHHHHHHHHH
Q psy4448 258 DLSVTHKLPLFLHC--RNAKSDFIEIMKE 284 (487)
Q Consensus 258 ~lA~~~~lPl~iH~--r~a~~~~l~il~~ 284 (487)
++++..++||++|- -=..+++-++++.
T Consensus 194 ~i~~~~~iPlV~hG~SGI~~e~~~~~i~~ 222 (281)
T PRK06806 194 EINDVVHIPLVLHGGSGISPEDFKKCIQH 222 (281)
T ss_pred HHHHhcCCCEEEECCCCCCHHHHHHHHHc
Confidence 44455678888887 5555666555543
No 399
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=21.14 E-value=7.4e+02 Score=23.79 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhhCC----CCEEEEecC-----chHHHHHHHHHhC
Q psy4448 123 ETQLKYFRKQLDLSVTHK----LPLFLHCRN-----AKSDFIEIMKEYA 162 (487)
Q Consensus 123 e~Q~~vF~~qL~LA~el~----lPViIH~r~-----a~~d~l~iLk~~~ 162 (487)
..|...++++|+-+.+.+ .-++.|-.- ...++.+++++++
T Consensus 145 ~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~~~~~~~~~~~~~~ 193 (232)
T cd07393 145 ERELERLELSLKAAKKREKEKIKIVMLHYPPANENGDDSPISKLIEEYG 193 (232)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCCCCHHHHHHHHHHcC
Confidence 458888999998776543 345678543 2345677777764
No 400
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=20.82 E-value=3e+02 Score=28.02 Aligned_cols=95 Identities=11% Similarity=0.083 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhhCCCCEEEEecCch------HHHHHHHHHhCCCCCCcEEEEecC-CCHHHHHHHHcCccchhHhhhcCC
Q psy4448 127 KYFRKQLDLSVTHKLPLFLHCRNAK------SDFIEIMKEYAPKLPRKGVIHSFD-GTPFQAVDSLKTKENLETVKSIPE 199 (487)
Q Consensus 127 ~vF~~qL~LA~el~lPViIH~r~a~------~d~l~iLk~~~~~~~~~~v~H~Fs-G~~~~a~~~l~~~~g~e~v~~iP~ 199 (487)
+..+..++.|.+.+-||||-.-... +.+..+++........++.+|-=- .+.+.++++++. |+
T Consensus 28 e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValHLDH~~~~e~i~~ai~~--Gf-------- 97 (287)
T PF01116_consen 28 ETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVALHLDHGKDFEDIKRAIDA--GF-------- 97 (287)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEEEEEE-SHHHHHHHHHH--TS--------
T ss_pred HHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEeecccCCCHHHHHHHHHh--Cc--------
Confidence 5678888999999999998775421 223333332211111356665422 358888888887 54
Q ss_pred CceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccccCC-CChhhhHHHHHHHHHHhhhCCCCE
Q psy4448 200 DRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKS-RNEPANIVYFRKQLDLSVTHKLPL 267 (487)
Q Consensus 200 driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~n~P~Q~~~F~~ql~lA~~~~lPl 267 (487)
.-+ +.|++ .+..-++..-++-.++|..+|.+|
T Consensus 98 tSV------------------------------------M~DgS~l~~eeNi~~T~~vv~~ah~~gv~V 130 (287)
T PF01116_consen 98 TSV------------------------------------MIDGSALPFEENIAITREVVEYAHAYGVSV 130 (287)
T ss_dssp SEE------------------------------------EEE-TTS-HHHHHHHHHHHHHHHHHTT-EE
T ss_pred ccc------------------------------------cccCCcCCHHHHHHHHHHHHHhhhhhCCEE
Confidence 111 11221 134567788888899999999775
No 401
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=20.77 E-value=8.5e+02 Score=24.29 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=27.6
Q ss_pred ChHHHHHHHHHHHHHhhhCCCCEEEEecC-chHHHHHHHHHh
Q psy4448 121 PVETQLKYFRKQLDLSVTHKLPLFLHCRN-AKSDFIEIMKEY 161 (487)
Q Consensus 121 ~~e~Q~~vF~~qL~LA~el~lPViIH~r~-a~~d~l~iLk~~ 161 (487)
+.+.++++++...+.+. -+.||+.|.-. ..+++++..+..
T Consensus 52 s~~Er~~~~~~~~~~~~-~~~~vi~gv~~~~~~~~i~~a~~a 92 (292)
T PRK03170 52 THEEHEELIRAVVEAVN-GRVPVIAGTGSNSTAEAIELTKFA 92 (292)
T ss_pred CHHHHHHHHHHHHHHhC-CCCcEEeecCCchHHHHHHHHHHH
Confidence 45778888888888664 36788888764 566666666543
No 402
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=20.55 E-value=8.8e+02 Score=24.41 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=28.6
Q ss_pred ChHHHHHHHHHHHHHhhhCCCCEEEEecC-chHHHHHHHHHh
Q psy4448 121 PVETQLKYFRKQLDLSVTHKLPLFLHCRN-AKSDFIEIMKEY 161 (487)
Q Consensus 121 ~~e~Q~~vF~~qL~LA~el~lPViIH~r~-a~~d~l~iLk~~ 161 (487)
+.+.++++++...+.+. -+.||+.|.-. ..++++++.+..
T Consensus 51 s~~Er~~l~~~~~~~~~-g~~pvi~gv~~~~t~~ai~~a~~A 91 (294)
T TIGR02313 51 TLEERKQAIENAIDQIA-GRIPFAPGTGALNHDETLELTKFA 91 (294)
T ss_pred CHHHHHHHHHHHHHHhC-CCCcEEEECCcchHHHHHHHHHHH
Confidence 46888899988888665 46888888753 566666666544
No 403
>PF02007 MtrH: Tetrahydromethanopterin S-methyltransferase MtrH subunit; InterPro: IPR023467 In archaea the enzyme tetrahydromethanopterin S-methyltransferase is composed of eight subunits, MtrA-H. The enzyme is a membrane- associated enzyme complex which catalyzes an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide []. Subunit MtrH catalyzes the methylation reaction and was shown to exhibit methyltetrahydromethanopterin:cob(I)alamin methyltransferase activity []. CH3-H4MPT + cob(I)alamin --> H4MPT + CH3-cob(III)alamin (H4MPT = tetrahydromethanopterin); GO: 0008168 methyltransferase activity, 0006730 one-carbon metabolic process
Probab=20.39 E-value=1.7e+02 Score=30.02 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=40.0
Q ss_pred hccCCccccCCCChhhhHHHHHHHHHHhhhCCCCEEEEeccchHHHH
Q psy4448 233 EQWKPDKMVKSRNEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFI 279 (487)
Q Consensus 233 ~~~~~~~~~~~~n~P~Q~~~F~~ql~lA~~~~lPl~iH~r~a~~~~l 279 (487)
-+...|..+|.=.+..-....++|.+|+.+.|.|.++|......|-+
T Consensus 33 HkIV~D~~~G~FDk~~Ae~Li~~q~elsd~TGnp~~~~I~~~s~EA~ 79 (296)
T PF02007_consen 33 HKIVEDEKKGIFDKEAAEALINRQEELSDETGNPCIVDIVAESPEAM 79 (296)
T ss_pred ceeeeccCCCccCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHH
Confidence 34567777888899999999999999999999999999987766544
No 404
>COG4294 Uve UV damage repair endonuclease [DNA replication, recombination, and repair]
Probab=20.37 E-value=6.4e+02 Score=26.10 Aligned_cols=102 Identities=21% Similarity=0.262 Sum_probs=59.0
Q ss_pred HHHHHHHhhhCCCCEEEEecC--------------chHHH---HHHHHHhCCCCCCcEEEEe---cCCCHHHHHHHHcCc
Q psy4448 129 FRKQLDLSVTHKLPLFLHCRN--------------AKSDF---IEIMKEYAPKLPRKGVIHS---FDGTPFQAVDSLKTK 188 (487)
Q Consensus 129 F~~qL~LA~el~lPViIH~r~--------------a~~d~---l~iLk~~~~~~~~~~v~H~---FsG~~~~a~~~l~~~ 188 (487)
|+..=++|.+++.-+.+|--. +..++ +++|+..+.......++|- |.|..+...++++.
T Consensus 118 L~evGe~a~~~~~Rl~~HPdQf~vl~S~~~eV~~ssir~layH~r~l~~mgl~~Rs~~~lhlgg~~gGK~~~~eqf~kn- 196 (347)
T COG4294 118 LEEVGELANKHNHRLTMHPDQFTVLNSPREEVVDSSIRDLAYHYRILDGMGLAERSVWNLHLGGTHGGKKERLEQFIKN- 196 (347)
T ss_pred HHHHHHHHHhhCceeeecCCceEEecCCchHHHHHHHHHHHHHHHHHhhcCCCcCCceEEEeccccCCchhHHHHHHHH-
Confidence 444455666777766666432 11111 2334333322112467776 66666666666654
Q ss_pred cchhHhhhcC---CCceeeccCCCCCCCCCCCcccchhcccchhhhhhccCCccccCCCChhhhHHHHHHHHHHhhhCCC
Q psy4448 189 ENLETVKSIP---EDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVYFRKQLDLSVTHKL 265 (487)
Q Consensus 189 ~g~e~v~~iP---~driLlETD~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~P~Q~~~F~~ql~lA~~~~l 265 (487)
++.+| +.||.||-|-=-.+ .+.-|-++++++.
T Consensus 197 -----i~~LP~~vksRl~LENDd~sYs----------------------------------------~eelL~lCek~~i 231 (347)
T COG4294 197 -----IQRLPDSVKSRLTLENDDKSYS----------------------------------------TEELLPLCEKLNI 231 (347)
T ss_pred -----HhhcCHHHHHhheeeccccccc----------------------------------------HHHHHHHHHHhCC
Confidence 44454 46899999864332 1456889999999
Q ss_pred CEE--EEeccchH
Q psy4448 266 PLF--LHCRNAKS 276 (487)
Q Consensus 266 Pl~--iH~r~a~~ 276 (487)
|++ +|--.++.
T Consensus 232 PlVfD~HHh~v~~ 244 (347)
T COG4294 232 PLVFDAHHHNVHP 244 (347)
T ss_pred CEEEechhhhccC
Confidence 988 56544444
No 405
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=20.37 E-value=8e+02 Score=27.63 Aligned_cols=131 Identities=18% Similarity=0.312 Sum_probs=68.7
Q ss_pred EECCCHHhHHHH------HHHHhc--CC--CeEEEeecCCCCCCCcCCCchhhHHHHHHHHHhcCCCEEEEEeeCCCCCC
Q psy4448 47 VTGTNVEDSISS------LKLAQS--DE--RLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDR 116 (487)
Q Consensus 47 ~v~~~~~~~~~~------~~la~~--~~--~v~~avGiHP~~~~~~~~~~~~~l~~L~~ll~~~~~~vvaIGEIGLD~~~ 116 (487)
++-.||.-|..- +.-++. +| .+..+.|| |. +++-.+++++ +|-+|+.|--
T Consensus 96 ~ifldpylw~~qig~krLv~kara~G~~I~gvvIsAGI-P~------------le~A~ElI~~-------L~~~G~~yv~ 155 (717)
T COG4981 96 SIFLDPYLWKLQIGGKRLVQKARASGAPIDGVVISAGI-PS------------LEEAVELIEE-------LGDDGFPYVA 155 (717)
T ss_pred EEEechHHhhhcCChHHHHHHHHhcCCCcceEEEecCC-Cc------------HHHHHHHHHH-------HhhcCceeEE
Confidence 334577766642 332332 22 47777777 31 3334455554 5567887732
Q ss_pred CCCCChHHHHHHHHHHHHHhhhC-CCCEEEEecCc-------hHHHHHHH----HHhCCCCCCcEEEEecC---CCHHHH
Q psy4448 117 VQYCPVETQLKYFRKQLDLSVTH-KLPLFLHCRNA-------KSDFIEIM----KEYAPKLPRKGVIHSFD---GTPFQA 181 (487)
Q Consensus 117 ~~~~~~e~Q~~vF~~qL~LA~el-~lPViIH~r~a-------~~d~l~iL----k~~~~~~~~~~v~H~Fs---G~~~~a 181 (487)
.. .--.+.-+.-|.+|++. .+|++||.-+. ++|+-++| .+.... .-|+-|+. |+++.+
T Consensus 156 fK----PGtIeqI~svi~IAka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~~---~NIvl~vGgGiGtp~~a 228 (717)
T COG4981 156 FK----PGTIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRSR---DNIVLCVGGGIGTPDDA 228 (717)
T ss_pred ec----CCcHHHHHHHHHHHhcCCCCceEEEEecCccCCccchhhcccHHHHHHHHHhcC---CCEEEEecCCcCChhhc
Confidence 11 12344567788999986 79999998762 44443332 222221 22444665 455555
Q ss_pred HHHHcCccchhH---hhhcCCCceeecc
Q psy4448 182 VDSLKTKENLET---VKSIPEDRLLLET 206 (487)
Q Consensus 182 ~~~l~~~~g~e~---v~~iP~driLlET 206 (487)
..+|.= .+.. +-.+|.|-||+.|
T Consensus 229 a~YLTG--eWSt~~g~P~MP~DGiLvGt 254 (717)
T COG4981 229 APYLTG--EWSTAYGFPPMPFDGILVGT 254 (717)
T ss_pred cccccc--chhhhcCCCCCCcceeEech
Confidence 544431 1111 2345677777765
No 406
>PRK13753 dihydropteroate synthase; Provisional
Probab=20.31 E-value=9.2e+02 Score=24.52 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHhhhCCCCEE-EEeccc
Q psy4448 249 NIVYFRKQLDLSVTHKLPLF-LHCRNA 274 (487)
Q Consensus 249 Q~~~F~~ql~lA~~~~lPl~-iH~r~a 274 (487)
+.++.+..=++..++|+||. =+|||.
T Consensus 187 n~~ll~~l~~l~~~~g~PvLvg~SRKs 213 (279)
T PRK13753 187 SLHVLSNLQKLKSALGLPLLVSVSRKS 213 (279)
T ss_pred HHHHHHhHHHHHHhCCCceEEEccHhH
Confidence 33444443344445777753 455553
No 407
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=20.25 E-value=69 Score=28.31 Aligned_cols=14 Identities=43% Similarity=0.714 Sum_probs=11.9
Q ss_pred CCEEEEEeeCCCCC
Q psy4448 102 KKVVAFGEFGLDYD 115 (487)
Q Consensus 102 ~~vvaIGEIGLD~~ 115 (487)
++.+++||+|||..
T Consensus 80 ~~~~~~GEl~L~G~ 93 (121)
T PF13541_consen 80 EDTVFIGELGLDGE 93 (121)
T ss_pred CCEEEEEEecCCcc
Confidence 46899999999963
No 408
>PRK06256 biotin synthase; Validated
Probab=20.03 E-value=9.3e+02 Score=24.48 Aligned_cols=46 Identities=11% Similarity=0.051 Sum_probs=25.1
Q ss_pred HHHHHHHhhh-CCCCEEEEecCchHHHHHHHHHhCCCCCCcEEEEecCCCH
Q psy4448 129 FRKQLDLSVT-HKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTP 178 (487)
Q Consensus 129 F~~qL~LA~e-l~lPViIH~r~a~~d~l~iLk~~~~~~~~~~v~H~FsG~~ 178 (487)
+...++..++ .++.+.++..--.++.++.|++.+. ..+.|.+.++.
T Consensus 128 ~~e~i~~i~~~~~i~~~~~~g~l~~e~l~~LkeaG~----~~v~~~lEts~ 174 (336)
T PRK06256 128 VVEAVKAIKEETDLEICACLGLLTEEQAERLKEAGV----DRYNHNLETSR 174 (336)
T ss_pred HHHHHHHHHhcCCCcEEecCCcCCHHHHHHHHHhCC----CEEecCCccCH
Confidence 3334444433 3444555544456678888887754 35666555543
No 409
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=20.02 E-value=8.3e+02 Score=23.92 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=66.5
Q ss_pred HhcCCCEEEEECCCHHhHHHHHHHHhcCCCeEEEee-----------------cCCCCCCCcCCCchhhHHHHHHHHHhc
Q psy4448 38 WNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVG-----------------CHPTRCSEFENDPEGYLQSLDKIIKEG 100 (487)
Q Consensus 38 ~~~GV~~ii~v~~~~~~~~~~~~la~~~~~v~~avG-----------------iHP~~~~~~~~~~~~~l~~L~~ll~~~ 100 (487)
.+.|+.++-+.+.+|+.....+.-.+ -.+...-| .|||....-. +.+ -.|.+++.++
T Consensus 56 ~~yg~~gv~i~~~np~~l~~~V~k~~--~~vv~V~GGd~~vNR~AvE~~VDVL~~P~~~Rkd~-g~d---HVLAKlAa~n 129 (216)
T PRK03892 56 KEYGKVAILLVTPKPSLIREVKQRFL--NYLIYVQGGDLRVNRYAIERGVDAIISPWVGRKDP-GID---HVLARMAAKR 129 (216)
T ss_pred HhcCcceEEEecCCHHHHHHHHHhcc--ceEEEEECCcHHHHHHHHhcccceeecccccCcCC-Ccc---HHHHHHHHHc
Confidence 46788888888888988776654321 12333333 5887643210 111 2355666653
Q ss_pred CCCEEEEEeeCCCCCCC---CCCChHHHHHHHHHHHHHhhhCCCCEEEEecC-------chHHHHHHHHH
Q psy4448 101 GKKVVAFGEFGLDYDRV---QYCPVETQLKYFRKQLDLSVTHKLPLFLHCRN-------AKSDFIEIMKE 160 (487)
Q Consensus 101 ~~~vvaIGEIGLD~~~~---~~~~~e~Q~~vF~~qL~LA~el~lPViIH~r~-------a~~d~l~iLk~ 160 (487)
=||| ++++.++ ....+..=...|+..++|+++|+-|++|=+.- +..|+..+...
T Consensus 130 ---~VAI---e~~L~plL~~~G~~Rar~L~~~r~~l~L~rKYd~P~VISS~A~s~~~lRsPRdl~aL~~~ 193 (216)
T PRK03892 130 ---GVAI---GFSLSPLLRANPYERANILRFMMKAWQLVNKYKVPRFITSSAESKWEVRGPRDLMSLGIN 193 (216)
T ss_pred ---CeEE---EEecHHHHhhCchhHHHHHHHHHHHHHHHHHcCCCEEEecCcchhccCCCHHHHHHHHHH
Confidence 3565 4555432 22234555778999999999999999998743 44555555543
Done!