RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4448
(487 letters)
>gnl|CDD|238635 cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a
cytoplasmic protein, shown to have magnesium dependent
DNase activity.
Length = 251
Score = 194 bits (495), Expect = 6e-59
Identities = 88/265 (33%), Positives = 124/265 (46%), Gaps = 58/265 (21%)
Query: 3 YIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLA 62
ID +L ++ D D VL RA AG+ KIIV GT+++ S +L+LA
Sbjct: 1 LIDTHCHLDFPQFD-----------ADRDDVLARAREAGVIKIIVVGTDLKSSKRALELA 49
Query: 63 QSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPV 122
+ + +Y+ VG HP E ++ L L+ + KVVA GE GLDY R + P
Sbjct: 50 KKYDNVYAAVGLHPHDADEHVDE---DLDLLELLAAN--PKVVAIGEIGLDYYRDKS-PR 103
Query: 123 ETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQA- 181
E Q + FR QL+L+ LP+ +H R+A D +EI+KEY P++GV H F G+ +A
Sbjct: 104 EVQKEVFRAQLELAKELNLPVVIHSRDAHEDVLEILKEY--GPPKRGVFHCFSGSAEEAK 161
Query: 182 --VD-----SL-------KTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQH 227
+D S+ E E VK IP +RLLLETD P+ P
Sbjct: 162 ELLDLGFYISISGIVTFKNANELREVVKEIPLERLLLETDSPYLAPVPFR---------- 211
Query: 228 EKVKKEQWKPDKMVKSRNEPANIVY 252
RNEPA + +
Sbjct: 212 --------------GKRNEPAYVKH 222
Score = 133 bits (337), Expect = 5e-36
Identities = 54/183 (29%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 238 DKMVKSRNEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHS 297
D FR QL+L+ LP+ +H R+A D +EI+KEY P++GV H
Sbjct: 95 DYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRDAHEDVLEILKEY--GPPKRGVFHC 152
Query: 298 FDGTPFQA---VD-----SL-------KTKENLETVKSIPEDRLLLETDCPWCEVKPSHA 342
F G+ +A +D S+ E E VK IP +RLLLETD P+ P
Sbjct: 153 FSGSAEEAKELLDLGFYISISGIVTFKNANELREVVKEIPLERLLLETDSPYLAPVPFR- 211
Query: 343 GFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLR 402
RNEPA + + E +A ++G+ E++ + +N R
Sbjct: 212 -----------------------GKRNEPAYVKHVAEKIAELKGISVEEVAEVTTENAKR 248
Query: 403 LFF 405
LF
Sbjct: 249 LFG 251
Score = 49.9 bits (120), Expect = 8e-07
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 428 RLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQ 486
+Y+ VG HP E ++ L L+ + KVVA GE GLDY R + P E Q
Sbjct: 54 NVYAAVGLHPHDADEHVDE---DLDLLELLAAN--PKVVAIGEIGLDYYRDKS-PREVQ 106
>gnl|CDD|223162 COG0084, TatD, Mg-dependent DNase [DNA replication, recombination,
and repair].
Length = 256
Score = 177 bits (452), Expect = 2e-52
Identities = 80/267 (29%), Positives = 122/267 (45%), Gaps = 56/267 (20%)
Query: 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLK 60
M ID +L ++ D D V+ RA AG++K++V GT++ED +L+
Sbjct: 1 MMLIDTHCHLDFEEFDE-----------DRDEVIARAREAGVKKMVVVGTDLEDFKRALE 49
Query: 61 LAQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYC 120
LA+ +Y+ VG HP + + E L+ L+++ + KVVA GE GLDY +
Sbjct: 50 LAEKYPNVYAAVGVHPL---DADEHSEEDLEELEQLAEHH-PKVVAIGEIGLDYYWDKEP 105
Query: 121 PVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQ 180
E Q + F QL+L+ LP+ +H R+A D +EI+KE P GV+H F G+ +
Sbjct: 106 DKERQEEVFEAQLELAKELNLPVIIHTRDAHEDTLEILKEE--GAPVGGVLHCFSGSAEE 163
Query: 181 AVDSLKT---------------KENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRT 225
A L ++ E + +P DRLLLETD P+ P + G
Sbjct: 164 ARKLLDLGFYISISGIVTFKNAEKLREVARELPLDRLLLETDAPYLAPVP-YRG------ 216
Query: 226 QHEKVKKEQWKPDKMVKSRNEPANIVY 252
RNEPA + +
Sbjct: 217 -----------------KRNEPAYVRH 226
Score = 121 bits (305), Expect = 2e-31
Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 41/170 (24%)
Query: 250 IVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSL 309
F QL+L+ LP+ +H R+A D +EI+KE P GV+H F G+ +A L
Sbjct: 111 EEVFEAQLELAKELNLPVIIHTRDAHEDTLEILKEE--GAPVGGVLHCFSGSAEEARKLL 168
Query: 310 KT---------------KENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKV 354
++ E + +P DRLLLETD P+ P + G
Sbjct: 169 DLGFYISISGIVTFKNAEKLREVARELPLDRLLLETDAPYLAPVP-YRG----------- 216
Query: 355 KKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
RNEPA + + E +A ++G+ E++ I +N RLF
Sbjct: 217 ------------KRNEPAYVRHVAEKLAELKGISAEEVAEITTENAKRLF 254
Score = 47.6 bits (114), Expect = 5e-06
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 427 ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQ 486
+Y+ VG HP + + E L+ L+++ + KVVA GE GLDY + E Q
Sbjct: 55 PNVYAAVGVHPL---DADEHSEEDLEELEQLAEHH-PKVVAIGEIGLDYYWDKEPDKERQ 110
>gnl|CDD|216250 pfam01026, TatD_DNase, TatD related DNase. This family of proteins
are related to a large superfamily of metalloenzymes.
TatD, a member of this family has been shown
experimentally to be a DNase enzyme.
Length = 255
Score = 156 bits (396), Expect = 2e-44
Identities = 79/242 (32%), Positives = 111/242 (45%), Gaps = 44/242 (18%)
Query: 27 EPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLA-QSDERLYSTVGCHPTRCSEFEND 85
+ D D V+ RA AG+ ++V GT++ED + +L+LA + ++Y+ VG HP E +
Sbjct: 13 DEDRDEVIERAREAGVTAVVVVGTDLEDFLRALELARKYPGKVYAAVGVHPHEADEASEE 72
Query: 86 PEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFL 145
L+ L KVVA GE GLDY V P E Q + FR+QL+L+ LP+ +
Sbjct: 73 VLEALEKLLLAEHP---KVVAIGEIGLDYYYVDESPKEAQEEVFRRQLELAKELDLPVVI 129
Query: 146 HCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQA---------------VDSLKTKEN 190
H R+A+ D +EI+KE R V+H F G+ A V K+
Sbjct: 130 HTRDAEEDLLEILKEAGAPGLR-VVLHCFTGSLETAKEILDLGFYISISGIVTFKNAKKL 188
Query: 191 LETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANI 250
E V IP DRLL+ETD P+ P RNEPA +
Sbjct: 189 REVVAEIPLDRLLVETDAPYL------------------------APVPYRGKRNEPAYV 224
Query: 251 VY 252
Y
Sbjct: 225 PY 226
Score = 109 bits (274), Expect = 4e-27
Identities = 50/170 (29%), Positives = 73/170 (42%), Gaps = 40/170 (23%)
Query: 250 IVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQA---- 305
FR+QL+L+ LP+ +H R+A+ D +EI+KE R V+H F G+ A
Sbjct: 110 EEVFRRQLELAKELDLPVVIHTRDAEEDLLEILKEAGAPGLR-VVLHCFTGSLETAKEIL 168
Query: 306 -----------VDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKV 354
V K+ E V IP DRLL+ETD P+
Sbjct: 169 DLGFYISISGIVTFKNAKKLREVVAEIPLDRLLVETDAPYL------------------- 209
Query: 355 KKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
P RNEPA + + E +A ++G+ E++ I +N RLF
Sbjct: 210 -----APVPYRGKRNEPAYVPYVAEKLAELKGISEEEVAKITTENAKRLF 254
Score = 51.9 bits (125), Expect = 2e-07
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 411 TPTRFNTCVSFAPYEIERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGE 470
F + A ++Y+ VG HP E + L+ L KVVA GE
Sbjct: 37 DLEDFLRALELARKYPGKVYAAVGVHPHEADEASEEVLEALEKLLLAEHP---KVVAIGE 93
Query: 471 FGLDYDRVQYCPVETQ 486
GLDY V P E Q
Sbjct: 94 IGLDYYYVDESPKEAQ 109
>gnl|CDD|182449 PRK10425, PRK10425, DNase TatD; Provisional.
Length = 258
Score = 127 bits (322), Expect = 7e-34
Identities = 71/222 (31%), Positives = 109/222 (49%), Gaps = 34/222 (15%)
Query: 5 DIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQS 64
DIG NL + + D D V+ RA+ AG+ +++TGTN+ +S + KLA+
Sbjct: 3 DIGVNLTSSQFAK-----------DRDDVVARAFAAGVNGMLITGTNLRESQQAQKLARQ 51
Query: 65 DERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVET 124
+ST G HP S+++ E + L +VVA GE GLD++R P E
Sbjct: 52 YPSCWSTAGVHPHDSSQWQAATEEAIIEL-----AAQPEVVAIGECGLDFNRNFSTPEE- 105
Query: 125 QLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDS 184
Q + F QL ++ +P+F+HCR+A F+ +++ + KLP V+H F GT +
Sbjct: 106 QERAFVAQLAIAAELNMPVFMHCRDAHERFMALLEPWLDKLP-GAVLHCFTGTREEMQAC 164
Query: 185 L----------------KTKENLETVKSIPEDRLLLETDCPW 210
L + E E + IP +RLLLETD P+
Sbjct: 165 LARGLYIGITGWVCDERRGLELRELLPLIPAERLLLETDAPY 206
Score = 81.3 bits (201), Expect = 3e-17
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 45/172 (26%)
Query: 253 FRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSL--- 309
F QL ++ +P+F+HCR+A F+ +++ + KLP V+H F GT + L
Sbjct: 110 FVAQLAIAAELNMPVFMHCRDAHERFMALLEPWLDKLP-GAVLHCFTGTREEMQACLARG 168
Query: 310 -------------KTKENLETVKSIPEDRLLLETDCPWC---EVKPSHAGFAYIRTQHEK 353
+ E E + IP +RLLLETD P+ ++ P
Sbjct: 169 LYIGITGWVCDERRGLELRELLPLIPAERLLLETDAPYLLPRDLTP-------------- 214
Query: 354 VKKEQWKPDKMVKS-RNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
KP S RNEPA + IL+ +A RG + L N LF
Sbjct: 215 ------KP----ASRRNEPAFLPHILQRIAHWRGEDAAWLAATTDANARTLF 256
Score = 33.5 bits (77), Expect = 0.17
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 430 YSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDR 477
+ST G HP S+++ E + L +VVA GE GLD++R
Sbjct: 56 WSTAGVHPHDSSQWQAATEEAIIEL-----AAQPEVVAIGECGLDFNR 98
>gnl|CDD|232780 TIGR00010, TIGR00010, hydrolase, TatD family. PSI-BLAST, starting
with a urease alpha subunit, finds a large superfamily
of proteins, including a number of different enzymes
that act as hydrolases at C-N bonds other than peptide
bonds (EC 3.5.-.-), many uncharacterized proteins, and
the members of this family. Several genomes have
multiple paralogs related to this family. However, a set
of 17 proteins can be found, one each from 17 of the
first 20 genomes, such that each member forms a
bidirectional best hit across genomes with all other
members of the set. This core set (and one other
near-perfect member), but not the other paralogs, form
the seed for this model. Additionally, members of the
seed alignment and all trusted hits, but not all
paralogs, have a conserved motif DxHxH near the amino
end. The member from E. coli was recently shown to have
DNase activity [Unknown function, Enzymes of unknown
specificity].
Length = 252
Score = 123 bits (311), Expect = 3e-32
Identities = 73/243 (30%), Positives = 113/243 (46%), Gaps = 47/243 (19%)
Query: 25 KHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCSEFEN 84
E D++ V+ RA AG+ ++ GT++ED + +L+LA+ +Y+ VG HP +
Sbjct: 12 DFEEDVEEVIERAKAAGVTAVVAVGTDLEDFLRALELAEKYPNVYAAVGVHPLDVDDDTK 71
Query: 85 DPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLF 144
+ L+ L KVVA GE GLDY + Q + FR QL L+ LP+
Sbjct: 72 EDIKELERL-----AAHPKVVAIGETGLDYYKADE-YKRRQEEVFRAQLQLAEELNLPVI 125
Query: 145 LHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTP--------------FQAVDSLKTKEN 190
+H R+A+ D ++I++E PK+ GV+H F G + + K ++
Sbjct: 126 IHARDAEEDVLDILREEKPKVG--GVLHCFTGDAELAKKLLDLGFYISISGIVTFKNAKS 183
Query: 191 L-ETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPAN 249
L E V+ IP +RLL+ETD P+ P + G RNEPA
Sbjct: 184 LREVVRKIPLERLLVETDSPYLAPVP-YRG-----------------------KRNEPAF 219
Query: 250 IVY 252
+ Y
Sbjct: 220 VRY 222
Score = 93.1 bits (232), Expect = 2e-21
Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 41/167 (24%)
Query: 253 FRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTP---------- 302
FR QL L+ LP+ +H R+A+ D ++I++E PK+ GV+H F G
Sbjct: 110 FRAQLQLAEELNLPVIIHARDAEEDVLDILREEKPKVG--GVLHCFTGDAELAKKLLDLG 167
Query: 303 ----FQAVDSLKTKENL-ETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKE 357
+ + K ++L E V+ IP +RLL+ETD P+ P + G
Sbjct: 168 FYISISGIVTFKNAKSLREVVRKIPLERLLVETDSPYLAPVP-YRG-------------- 212
Query: 358 QWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
RNEPA + +E +A ++G++ E+L I +N RLF
Sbjct: 213 ---------KRNEPAFVRYTVEAIAEIKGMDVEELAQITTKNAKRLF 250
Score = 34.2 bits (79), Expect = 0.11
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 427 ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDY 475
+Y+ VG HP + + L+ L KVVA GE GLDY
Sbjct: 53 PNVYAAVGVHPLDVDDDTKEDIKELERL-----AAHPKVVAIGETGLDY 96
>gnl|CDD|171118 PRK11449, PRK11449, putative deoxyribonuclease YjjV; Provisional.
Length = 258
Score = 83.1 bits (205), Expect = 7e-18
Identities = 71/237 (29%), Positives = 104/237 (43%), Gaps = 36/237 (15%)
Query: 34 LNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDPEGYLQSL 93
L RA AG+ KIIV T E+ L LA+ + LY+ +G HP + + L L
Sbjct: 25 LQRAAQAGVGKIIVPATEAENFARVLALAERYQPLYAALGLHPGMLEKHSDVS---LDQL 81
Query: 94 DKIIKEGGKKVVAFGEFGLDY--DRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAK 151
+ ++ KVVA GE GLD D Q+ E Q +QL L+ + LP+ LH R
Sbjct: 82 QQALERRPAKVVAVGEIGLDLFGDDPQF---ERQQWLLDEQLKLAKRYDLPVILHSRRTH 138
Query: 152 SDFIEIMKEYAPKLPRKGVIHSFDGTPFQA---------------VDSLKTKENLETVKS 196
+K + LPR GV+H F G+ QA + + + + +
Sbjct: 139 DKLAMHLKRHD--LPRTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAK 196
Query: 197 IPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKP--DKMVKSRNEPANIV 251
+P LLLETD P + GF Q + + EQ D + + R EPA+ +
Sbjct: 197 LPLASLLLETDAPDMPLN----GF-----QGQPNRPEQAARVFDVLCELRPEPADEI 244
Score = 46.1 bits (109), Expect = 2e-05
Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 41/164 (25%)
Query: 256 QLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQA---------- 305
QL L+ + LP+ LH R +K + LPR GV+H F G+ QA
Sbjct: 119 QLKLAKRYDLPVILHSRRTHDKLAMHLKRHD--LPRTGVVHGFSGSLQQAERFVQLGYKI 176
Query: 306 -----VDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWK 360
+ + + + + +P LLLETD P + GF Q +
Sbjct: 177 GVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLN----GF-------------QGQ 219
Query: 361 PDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
P N P ++ +++ +R +++ ++ NT LF
Sbjct: 220 P-------NRPEQAARVFDVLCELRPEPADEIAEVLLNNTYTLF 256
Score = 30.3 bits (68), Expect = 2.0
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 14/96 (14%)
Query: 382 AAVRGVEREKLGPIIHQNTLRLFFPHELPTPTRFNTCVSFAPYEIERLYSTVGCHPTRCS 441
A+++ + +G II T F L R+ LY+ +G HP
Sbjct: 23 ASLQRAAQAGVGKIIVPATEAENFARVLALAERYQP-----------LYAALGLHPGMLE 71
Query: 442 EFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDR 477
+ + L L + ++ KVVA GE GLD
Sbjct: 72 KHSDVS---LDQLQQALERRPAKVVAVGEIGLDLFG 104
>gnl|CDD|236767 PRK10812, PRK10812, putative DNAse; Provisional.
Length = 265
Score = 52.1 bits (125), Expect = 2e-07
Identities = 58/222 (26%), Positives = 92/222 (41%), Gaps = 43/222 (19%)
Query: 29 DIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDPEG 88
D+D VL +A ++ + T + L + + + G HP N E
Sbjct: 21 DVDDVLAKAAARDVKFCLAVATTLPGYRHMRDLVGERDNVVFSCGVHPL------NQDEP 74
Query: 89 Y-LQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCP--VETQLKYFRKQLDLSVTHKLPLFL 145
Y ++ L ++ + VVA GE GLDY Y P Q + FR + + P+ +
Sbjct: 75 YDVEELRRL--AAEEGVVAMGETGLDY---YYTPETKVRQQESFRHHIQIGRELNKPVIV 129
Query: 146 HCRNAKSDFIEIM------------------KEYAPKLPRKGVIHSFDG-TPFQAVDSLK 186
H R+A++D + I+ +E A KL G SF G F+ + L+
Sbjct: 130 HTRDARADTLAILREEKVTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNAEQLR 189
Query: 187 TKENLETVKSIPEDRLLLETDCPWCEVKPSHAGF----AYIR 224
+ + +P DRLL+ETD P+ P H G A +R
Sbjct: 190 -----DAARYVPLDRLLVETDSPYLAPVP-HRGKENQPAMVR 225
Score = 47.8 bits (114), Expect = 5e-06
Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 48/158 (30%)
Query: 266 PLFLHCRNAKSDFIEIM------------------KEYAPKLPRKGVIHSFDG-TPFQAV 306
P+ +H R+A++D + I+ +E A KL G SF G F+
Sbjct: 126 PVIVHTRDARADTLAILREEKVTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNA 185
Query: 307 DSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVK 366
+ L+ + + +P DRLL+ETD P+ P H G KE
Sbjct: 186 EQLR-----DAARYVPLDRLLVETDSPYLAPVP-HRG------------KE--------- 218
Query: 367 SRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
N+PA + + E +A ++GV E+L + N RLF
Sbjct: 219 --NQPAMVRDVAEYMAVLKGVSVEELAQVTTDNFARLF 254
>gnl|CDD|224024 COG1099, COG1099, Predicted metal-dependent hydrolases with the
TIM-barrel fold [General function prediction only].
Length = 254
Score = 44.7 bits (106), Expect = 4e-05
Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 36/170 (21%)
Query: 67 RLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQL 126
+L VG HP + E L+ L++++ VVA GE GL+ + +
Sbjct: 65 KLKVAVGVHP---RAIPPELEEVLEELEELLSNED--VVAIGEIGLEEA------TDEEK 113
Query: 127 KYFRKQLDLSVTHKLPLFLHC-----RNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQA 181
+ FR+QL+L+ +P+ +H + A S ++I+ E K P VI D +
Sbjct: 114 EVFREQLELARELDVPVIVHTPRRNKKEATSKILDILIESGLK-PSLVVI---DHVNEET 169
Query: 182 VDS----------------LKTKENLETVKSIPEDRLLLETDCPWCEVKP 215
VD L +E +E V+ +R++L +D P
Sbjct: 170 VDEVLDEEFYVGLTVQPGKLTVEEAVEIVREYGAERIILNSDAGSAASDP 219
Score = 31.2 bits (71), Expect = 0.90
Identities = 29/173 (16%), Positives = 62/173 (35%), Gaps = 42/173 (24%)
Query: 245 NEPANIVYFRKQLDLSVTHKLPLFLHC--RNAKSDFIEIMKEYAPKLPRKGVIHSFDGTP 302
FR+QL+L+ +P+ +H RN K +I+ ++ P
Sbjct: 108 ATDEEKEVFREQLELARELDVPVIVHTPRRNKKEATSKILD----------ILIESGLKP 157
Query: 303 FQAV-DSLKTKENLETVKSIPEDRLLLETDCPWC--EVKP---SHAGFAYIRTQHEKVKK 356
V D + N ETV +L+ + + V+P + I ++
Sbjct: 158 SLVVIDHV----NEETVDE------VLDEEF-YVGLTVQPGKLTVEEAVEIVREY----- 201
Query: 357 EQWKPDKMVKSRNEPANIVQILEIVAAV-----RGVEREKLGPIIHQNTLRLF 404
++++ + + + L + RGV E++ ++ +N L +
Sbjct: 202 ---GAERIILNSDAGSAASDPLAVPRTALEMEERGVGEEEIEKVVRENALSFY 251
>gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a
member of the nucleotidyl transferase family. This is
a subfamily of nucleotidyl transferases. Nucleotidyl
transferases transfer nucleotides onto phosphosugars.
The activated sugars are precursors for synthesis of
lipopolysaccharide, glycolipids and polysaccharides.
Other subfamilies of nucleotidyl transferases include
Alpha-D-Glucose-1-Phosphate Cytidylyltransferase,
Mannose-1-phosphate guanyltransferase, and
Glucose-1-phosphate thymidylyltransferase.
Length = 221
Score = 32.2 bits (74), Expect = 0.42
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 14/53 (26%)
Query: 26 HEPDIDHVLNRAWNAGLEKIIVTGTNV-----------EDSISSLKLAQSDER 67
+P IDH L+R AG+ +I+V N DS L++ SDE
Sbjct: 29 GKPLIDHALDRLAAAGIRRIVV---NTHHLADQIEAHLGDSRFGLRITISDEP 78
>gnl|CDD|181585 PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional.
Length = 261
Score = 31.2 bits (71), Expect = 1.0
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 27/99 (27%)
Query: 82 FENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSV---- 137
+ +D E ++I K GG+ + G+ ++ D V ++T +K F LD+ +
Sbjct: 38 YRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNL--IQTAVKEF-GTLDVMINNAG 94
Query: 138 ------THKLPL--------------FLHCRNAKSDFIE 156
+H++ L FL R A F+E
Sbjct: 95 IENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVE 133
>gnl|CDD|184139 PRK13555, PRK13555, azoreductase; Provisional.
Length = 208
Score = 30.1 bits (67), Expect = 2.1
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Query: 83 ENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKY 128
N PEG GGKKVV G G DY Q P+E + Y
Sbjct: 126 ANGPEGLA---------GGKKVVVLGARGSDYSSEQMAPMEMAVNY 162
>gnl|CDD|226332 COG3811, COG3811, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 85
Score = 27.8 bits (62), Expect = 3.4
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 164 KLPRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPEDR 201
KL RK +I S G P++ T+ L+ V++ ++R
Sbjct: 53 KLKRKKLIKSSQGGPYRI-----TRRGLKNVRAQLDNR 85
Score = 27.8 bits (62), Expect = 3.4
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 288 KLPRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPEDR 325
KL RK +I S G P++ T+ L+ V++ ++R
Sbjct: 53 KLKRKKLIKSSQGGPYRI-----TRRGLKNVRAQLDNR 85
>gnl|CDD|224028 COG1103, COG1103, Archaea-specific pyridoxal phosphate-dependent
enzymes [General function prediction only].
Length = 382
Score = 29.4 bits (66), Expect = 4.1
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 81 EFENDPEGYLQSLDKIIKEGGKKVV 105
E++ PEGY + ++++ EGG
Sbjct: 134 EYKITPEGYAEVIEEVKDEGGDPPA 158
Score = 29.4 bits (66), Expect = 4.1
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 442 EFENDPEGYLQSLDKIIKEGGKKVV 466
E++ PEGY + ++++ EGG
Sbjct: 134 EYKITPEGYAEVIEEVKDEGGDPPA 158
>gnl|CDD|219573 pfam07781, Reovirus_Mu2, Reovirus minor core protein Mu-2. This
family represents the Reovirus core protein Mu-2. Mu-2
is a microtubule associated protein and is thought to
play a key role in the formation and structural
organisation of reovirus inclusion bodies.
Length = 735
Score = 29.4 bits (66), Expect = 4.9
Identities = 31/167 (18%), Positives = 47/167 (28%), Gaps = 19/167 (11%)
Query: 300 GTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHE---KVKK 356
GT FQ + S K + S P LL + PW E P A E +
Sbjct: 562 GTLFQVLLSYCYKMQATSTASKPAGLLLKQLFGPWLEAAPLLAPLTPNSLSAELAWYIPA 621
Query: 357 EQWKPD----------KMVKSRNEPANIVQILEIV----AAVRGVERE--KLGPIIHQNT 400
+ + + R P I + A V+R ++G I
Sbjct: 622 KVLRANGWCICEDRHVTFSFIRGPPLVISVLRLYDWSRFRATIIVDRTLVEVGADIRAVA 681
Query: 401 LRLFFPHELPTPTRFNTCVSFAPYEIERLYSTVGCHPTRCSEFENDP 447
+ + + P + F L C R +N P
Sbjct: 682 VSVIWTEYAPPVPLISNPALFTLPATYHLSLNCSCTSGRGWAAKNMP 728
>gnl|CDD|236522 PRK09450, cyaA, adenylate cyclase; Provisional.
Length = 830
Score = 29.1 bits (66), Expect = 5.7
Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 401 LRLFFPHELPTPTRFNTCVSFAPYEIERL--YSTVGCHPTR 439
LR FP LP PT P EI L + PT
Sbjct: 529 LRQHFPLRLPAPTPQALL---QPCEIRHLLIIVNLEVDPTA 566
>gnl|CDD|132929 cd07018, S49_SppA_67K_type, Signal peptide peptidase A (SppA) 67K
type, a serine protease, has catalytic Ser-Lys dyad.
Signal peptide peptidase A (SppA; Peptidase S49;
Protease IV) 67K type: SppA is found in all three
domains of life and is involved in the cleavage of
signal peptides after their removal from the precursor
proteins by signal peptidases. Members in this subfamily
contain an amino-terminal domain in addition to the
carboxyl-terminal protease domain that is conserved in
all the S49 family members (sometimes referred to as 67K
type), similar to E. coli and Arabidopsis thaliana SppA
peptidases. Unlike the eukaryotic functional homologs
that are proposed to be aspartic proteases,
site-directed mutagenesis and sequence analysis have
shown that members in this subfamily, mostly bacterial,
are serine proteases. The predicted active site serine
for members in this family occurs in a transmembrane
domain. Mutagenesis studies also suggest that the
catalytic center comprises a Ser-Lys dyad (both residues
absolutely conserved within bacteria, chloroplast and
mitochondrial signal peptidase family members) and not
the usual Ser-His-Asp catalytic triad found in the
majority of serine proteases. Interestingly, the single
membrane spanning E. coli SppA carries out catalysis
using a Ser-Lys dyad with the serine located in the
conserved carboxy-terminal protease domain and the
lysine in the non-conserved amino-terminal domain.
Length = 222
Score = 28.3 bits (64), Expect = 8.3
Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 23/80 (28%)
Query: 49 GTNVEDSISSLKLAQSDER---LY---STVGCHPTRCSEFENDPEGYLQSLDKII---KE 99
++ D + +L+ A D+R + + + L+ L + + +
Sbjct: 28 ELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAK-----------LEELRQALERFRA 76
Query: 100 GGKKVVAFGEFGLDYDRVQY 119
GK V+A+ + Y + QY
Sbjct: 77 SGKPVIAYADG---YSQGQY 93
>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine
Kinase, Discoidin Domain Receptor 2. Protein Tyrosine
Kinase (PTK) family; mammalian Discoidin Domain Receptor
2 (DDR2) and homologs; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR2 is a
member of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDR2 binds mostly to fibrillar collagens. More recently,
it has been reported to also bind collagen X. DDR2 is
widely expressed in many tissues with the highest levels
found in skeletal muscle, skin, kidney and lung. It is
important in cell proliferation and development. Mice,
with a deletion of DDR2, suffer from dwarfism and
delayed healing of epidermal wounds. DDR2 also
contributes to collagen (type I) regulation by
inhibiting fibrillogenesis and altering the morphology
of collagen fibers. It is also expressed in immature
dendritic cells (DCs), where it plays a role in DC
activation and function.
Length = 296
Score = 28.3 bits (63), Expect = 8.3
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 15/62 (24%)
Query: 108 GEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHC--------RNAKSDF---IE 156
G+FG V C E K+ K L V+ P+ + +NA++DF I+
Sbjct: 16 GQFG----EVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIK 71
Query: 157 IM 158
IM
Sbjct: 72 IM 73
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.414
Gapped
Lambda K H
0.267 0.0764 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,711,750
Number of extensions: 2376037
Number of successful extensions: 2333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2286
Number of HSP's successfully gapped: 50
Length of query: 487
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 386
Effective length of database: 6,457,848
Effective search space: 2492729328
Effective search space used: 2492729328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)