RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4448
(487 letters)
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Length = 301
Score = 328 bits (843), Expect = e-110
Identities = 128/266 (48%), Positives = 174/266 (65%), Gaps = 18/266 (6%)
Query: 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLK 60
MK+IDIG NL D M+ G Y QKH+ D+ V+ RA G++K ++TG N++DS +L
Sbjct: 1 MKFIDIGINLTDPMFRGIYRGV-QKHQDDLQDVIGRAVEIGVKKFMITGGNLQDSKDALH 59
Query: 61 LAQSDERLYSTVGCHPTRCSEF-ENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQY 119
LAQ++ +STVGCHPTRC EF +N+P+ YL+ L + + KVVA GE GLD+DR+Q+
Sbjct: 60 LAQTNGMFFSTVGCHPTRCGEFEKNNPDLYLKELLNLAENNKGKVVAIGECGLDFDRLQF 119
Query: 120 CPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTP- 178
CP +TQLKYF KQ +LS KLP+FLHCRN+ ++F++I K + GV+HSFDGT
Sbjct: 120 CPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDITKRNRDRCV-GGVVHSFDGTKE 178
Query: 179 --FQAVD----------SLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQ 226
+D SLKT+ NLE +KSIP ++L++ETD PWC VK +HAG YIRT
Sbjct: 179 AAAALIDLDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIRTA 238
Query: 227 HEKVKKEQWKPDKMVKSRNEPANIVY 252
KK W+ +K RNEP +I+
Sbjct: 239 FPTKKK--WESGHCLKDRNEPCHIIQ 262
Score = 197 bits (503), Expect = 9e-60
Identities = 77/168 (45%), Positives = 107/168 (63%), Gaps = 16/168 (9%)
Query: 252 YFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTP---FQAVD- 307
YF KQ +LS KLP+FLHCRN+ ++F++I K + GV+HSFDGT +D
Sbjct: 128 YFEKQFELSEQTKLPMFLHCRNSHAEFLDITKRNRDRCV-GGVVHSFDGTKEAAAALIDL 186
Query: 308 ---------SLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQ 358
SLKT+ NLE +KSIP ++L++ETD PWC VK +HAG YIRT KK
Sbjct: 187 DLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIRTAFPTKKK-- 244
Query: 359 WKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLFFP 406
W+ +K RNEP +I+QILEI++AVR + +L ++ NT+++FFP
Sbjct: 245 WESGHCLKDRNEPCHIIQILEIMSAVRDEDPLELANTLYNNTIKVFFP 292
Score = 88.9 bits (221), Expect = 8e-20
Identities = 34/62 (54%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 427 ERLYSTVGCHPTRCSEF-ENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVET 485
+STVGCHPTRC EF +N+P+ YL+ L + + KVVA GE GLD+DR+Q+CP +T
Sbjct: 65 GMFFSTVGCHPTRCGEFEKNNPDLYLKELLNLAENNKGKVVAIGECGLDFDRLQFCPKDT 124
Query: 486 QL 487
QL
Sbjct: 125 QL 126
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural
genomics center for infect disease, dysentery, liver
abcess; 1.95A {Entamoeba histolytica hm-1}
Length = 325
Score = 318 bits (818), Expect = e-106
Identities = 107/271 (39%), Positives = 153/271 (56%), Gaps = 23/271 (8%)
Query: 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLK 60
++IDIGANL D Y G Y K HE DID VL RA GL II+T + D +++
Sbjct: 26 QQFIDIGANLTDDNYFGNYHGK-HYHEEDIDVVLQRAERNGLSHIIITSGCLNDFKKAIE 84
Query: 61 LAQ-----SDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYD 115
+ ++ +L +T+G HPTR +E EGYL L + ++ KVVA GE GLDY+
Sbjct: 85 IINKYQNLTNIKLVTTIGVHPTRTNEL--KQEGYLDELLLLCEKNIDKVVAIGEIGLDYE 142
Query: 116 RVQYCPVETQLKYFRKQLDLSVTH-KLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSF 174
R+Q+ ETQL +R L + LP F HCR + SD ++ KE KGV+H F
Sbjct: 143 RLQFSDKETQLSGYRTLSILHQKYPYLPFFFHCRKSWSDLCQLNKELGYNGC-KGVVHCF 201
Query: 175 DGTPFQAV-------------DSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFA 221
DGT + +SL++ E L +K IP +RL +ETDCP+C +K + AGF
Sbjct: 202 DGTEEEMNQILNEGWDIGVTGNSLQSIELLNVMKQIPIERLHIETDCPYCGIKKTSAGFK 261
Query: 222 YIRTQHEKVKKEQWKPDKMVKSRNEPANIVY 252
Y++ + VK E+++ +K V+ RNEP+NI+
Sbjct: 262 YLKEKDFGVKVEKYQRNKYVQRRNEPSNIID 292
Score = 200 bits (511), Expect = 1e-60
Identities = 56/169 (33%), Positives = 95/169 (56%), Gaps = 15/169 (8%)
Query: 252 YFRKQLDLSVTH-KLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAV---- 306
+R L + LP F HCR + SD ++ KE KGV+H FDGT +
Sbjct: 155 GYRTLSILHQKYPYLPFFFHCRKSWSDLCQLNKELGYNGC-KGVVHCFDGTEEEMNQILN 213
Query: 307 ---------DSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKE 357
+SL++ E L +K IP +RL +ETDCP+C +K + AGF Y++ + VK E
Sbjct: 214 EGWDIGVTGNSLQSIELLNVMKQIPIERLHIETDCPYCGIKKTSAGFKYLKEKDFGVKVE 273
Query: 358 QWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLFFP 406
+++ +K V+ RNEP+NI+ I I+++++ + + ++ N++ ++FP
Sbjct: 274 KYQRNKYVQRRNEPSNIIDIAIIMSSIKHISLFEFVNKVYSNSMNMYFP 322
Score = 85.9 bits (213), Expect = 1e-18
Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 427 ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQ 486
+L +T+G HPTR +E EGYL L + ++ KVVA GE GLDY+R+Q+ ETQ
Sbjct: 95 IKLVTTIGVHPTRTNEL--KQEGYLDELLLLCEKNIDKVVAIGEIGLDYERLQFSDKETQ 152
Query: 487 L 487
L
Sbjct: 153 L 153
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Length = 401
Score = 262 bits (671), Expect = 2e-83
Identities = 103/354 (29%), Positives = 149/354 (42%), Gaps = 103/354 (29%)
Query: 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLK 60
+KY DIG NL D M+ G Y+ K Q H D +L RA ++ +VTG+++ +S S+++
Sbjct: 12 LKYYDIGLNLTDPMFHGIYNGK-QYHPADYVKLLERAAQRHVKNALVTGSSIAESQSAIE 70
Query: 61 LAQ-----SDERLYSTVGCHPTRCSEFEN------------------------------- 84
L S +LY T+G HP +EF +
Sbjct: 71 LVSSVKDLSPLKLYHTIGVHPCCVNEFADASQGDKASASIDNPSMDEAYNESLYAKVISN 130
Query: 85 --DPEGYLQSLDKIIKE----GGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSV- 137
+G L+ L ++ + + GE GLDYDR Y E Q +F +QL +S
Sbjct: 131 PSFAQGKLKELYDLMNQQAKPHDTSFRSIGEIGLDYDRFHYSSKEMQKVFFEEQLKISCL 190
Query: 138 ---THKLPLFLHCRNAKSDFIEIMKEYAPKLP-------------------------RKG 169
PLFLH R+A DF++I++ + RK
Sbjct: 191 NDKLSSYPLFLHMRSACDDFVQILERFVVGFTDEKDTFQLQKLGASSSSGFYKFHPDRKL 250
Query: 170 VIHSFDGTPFQA---------------VDSLKTKENLETVKSIPEDRLLLETDCPWCEVK 214
V+HSF G+ SL+T+ENL VK IP +RLLLETD PWCE+K
Sbjct: 251 VVHSFTGSAIDLQKLLNLSPNIFIGVNGCSLRTEENLAVVKQIPTERLLLETDAPWCEIK 310
Query: 215 PSHAGFAYIRT----------------QHEKVKKEQWKPDKMVKSRNEPANIVY 252
+HA F Y+ +++ K + MVK RNEP N+
Sbjct: 311 RTHASFQYLAKYQEVRDFEYPAFKSVKKNKLADKLNAEELYMVKGRNEPCNMEQ 364
Score = 174 bits (441), Expect = 1e-49
Identities = 63/217 (29%), Positives = 93/217 (42%), Gaps = 60/217 (27%)
Query: 252 YFRKQLDLSV----THKLPLFLHCRNAKSDFIEIMKEYAPKLP----------------- 290
+F +QL +S PLFLH R+A DF++I++ +
Sbjct: 180 FFEEQLKISCLNDKLSSYPLFLHMRSACDDFVQILERFVVGFTDEKDTFQLQKLGASSSS 239
Query: 291 --------RKGVIHSFDGTPFQA---------------VDSLKTKENLETVKSIPEDRLL 327
RK V+HSF G+ SL+T+ENL VK IP +RLL
Sbjct: 240 GFYKFHPDRKLVVHSFTGSAIDLQKLLNLSPNIFIGVNGCSLRTEENLAVVKQIPTERLL 299
Query: 328 LETDCPWCEVKPSHAGFAYIRT----------------QHEKVKKEQWKPDKMVKSRNEP 371
LETD PWCE+K +HA F Y+ +++ K + MVK RNEP
Sbjct: 300 LETDAPWCEIKRTHASFQYLAKYQEVRDFEYPAFKSVKKNKLADKLNAEELYMVKGRNEP 359
Query: 372 ANIVQILEIVAAVRGVEREKLGPIIHQNTLRLFFPHE 408
N+ Q+ +V+ V+ V+ L + T ++F
Sbjct: 360 CNMEQVAIVVSEVKDVDLATLIDTTWKTTCKIFGEGH 396
Score = 69.3 bits (169), Expect = 7e-13
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 406 PHELPTPTRFNTCVSFAPYEIERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKV 465
+ + S E LY+ V +P+ + +++ K
Sbjct: 100 ASQGDKASASIDNPSMDEAYNESLYAKVISNPSFAQGKLKE---LYDLMNQQAKPHDTSF 156
Query: 466 VAFGEFGLDYDRVQYCPVETQL 487
+ GE GLDYDR Y E Q
Sbjct: 157 RSIGEIGLDYDRFHYSSKEMQK 178
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Length = 287
Score = 201 bits (514), Expect = 2e-61
Identities = 73/272 (26%), Positives = 114/272 (41%), Gaps = 58/272 (21%)
Query: 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLK 60
M+ IDIG NL ++ + ++ RA AG+ ++++TGT++ S +L+
Sbjct: 1 MQLIDIGVNLTNSSFHD-----------QQAAIVERALEAGVTQMLLTGTSLAVSEQALE 49
Query: 61 LAQ----SDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDR 116
L Q S L++T G HP + + L ++ E +V A GE GLD++R
Sbjct: 50 LCQQLDASGAHLFATAGVHPHDAKAW---DTDSERQLRLLLSE--PRVRAVGECGLDFNR 104
Query: 117 VQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDG 176
+ P Q K QL L+ +LP+FLH R+A + I+K+Y L V+H F G
Sbjct: 105 -DFSPRPLQEKALEAQLTLAAQLRLPVFLHERDASERLLAILKDYRDHLTG-AVVHCFTG 162
Query: 177 TPFQAVDSL---------------KTKENL-ETVKSIPEDRLLLETDCPWCEVKPSHAGF 220
L + +L V +IPE RL+LE+D P+ +
Sbjct: 163 EREALFAYLDLDLHIGITGWICDERRGTHLHPLVGNIPEGRLMLESDAPYLLPRS-LRP- 220
Query: 221 AYIRTQHEKVKKEQWKPDKMVKSRNEPANIVY 252
K RNEPA +
Sbjct: 221 ------------------KPKSGRNEPAFLPE 234
Score = 129 bits (328), Expect = 2e-34
Identities = 43/168 (25%), Positives = 61/168 (36%), Gaps = 37/168 (22%)
Query: 253 FRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSL--- 309
QL L+ +LP+FLH R+A + I+K+Y L V+H F G L
Sbjct: 116 LEAQLTLAAQLRLPVFLHERDASERLLAILKDYRDHLTG-AVVHCFTGEREALFAYLDLD 174
Query: 310 ------------KTKENL-ETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKK 356
+ +L V +IPE RL+LE+D P+ +
Sbjct: 175 LHIGITGWICDERRGTHLHPLVGNIPEGRLMLESDAPYLLPRS-LRP------------- 220
Query: 357 EQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
K RNEPA + ++L VA RG E F
Sbjct: 221 ------KPKSGRNEPAFLPEVLREVALHRGESAEHTAAHTTATARDFF 262
Score = 52.2 bits (126), Expect = 1e-07
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 423 PYEIERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCP 482
L++T G HP + + L ++ E +V A GE GLD++R + P
Sbjct: 55 DASGAHLFATAGVHPHDAKAW---DTDSERQLRLLLSE--PRVRAVGECGLDFNR-DFSP 108
Query: 483 VETQ 486
Q
Sbjct: 109 RPLQ 112
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION,
structural genomics, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.1.9.12
Length = 264
Score = 195 bits (497), Expect = 3e-59
Identities = 70/271 (25%), Positives = 124/271 (45%), Gaps = 60/271 (22%)
Query: 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLK 60
+ DIG NL + + D D V+ A++AG+ +++TGTN+ +S + K
Sbjct: 3 YRMFDIGVNLTSSQFAK-----------DRDDVVACAFDAGVNGLLITGTNLRESQQAQK 51
Query: 61 LAQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYC 120
LA+ +ST G HP S++ +++ ++ + +VVA GE GLD++R +
Sbjct: 52 LARQYSSCWSTAGVHPHDSSQW---QAATEEAIIELAAQ--PEVVAIGECGLDFNR-NFS 105
Query: 121 PVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQ 180
E Q + F QL ++ +P+F+HCR+A F+ +++ + KLP V+H F GT +
Sbjct: 106 TPEEQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLPG-AVLHCFTGTREE 164
Query: 181 AVDSL----------------KTKENLETVKSIPEDRLLLETDCPW---CEVKPSHAGFA 221
+ + E E + IP ++LL+ETD P+ ++ P +
Sbjct: 165 MQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSS-- 222
Query: 222 YIRTQHEKVKKEQWKPDKMVKSRNEPANIVY 252
RNEPA++ +
Sbjct: 223 ---------------------RRNEPAHLPH 232
Score = 123 bits (312), Expect = 2e-32
Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 43/171 (25%)
Query: 253 FRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSL--- 309
F QL ++ +P+F+HCR+A F+ +++ + KLP V+H F GT + +
Sbjct: 114 FVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLPG-AVLHCFTGTREEMQACVAHG 172
Query: 310 -------------KTKENLETVKSIPEDRLLLETDCPW---CEVKPSHAGFAYIRTQHEK 353
+ E E + IP ++LL+ETD P+ ++ P +
Sbjct: 173 IYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSS---------- 222
Query: 354 VKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
RNEPA++ IL+ +A RG + L N LF
Sbjct: 223 -------------RRNEPAHLPHILQRIAHWRGEDAAWLAATTDANVKTLF 260
Score = 48.3 bits (116), Expect = 2e-06
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 427 ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQ 486
+ST G HP S++ +++ ++ + +VVA GE GLD++R + E Q
Sbjct: 57 SSCWSTAGVHPHDSSQW---QAATEEAIIELAAQ--PEVVAIGECGLDFNR-NFSTPEEQ 110
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural
genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP:
c.1.9.12
Length = 259
Score = 163 bits (416), Expect = 2e-47
Identities = 62/198 (31%), Positives = 88/198 (44%), Gaps = 21/198 (10%)
Query: 27 EPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDP 86
D + L RA AG+ KIIV T E+ L LA++ + LY+ +G HP E
Sbjct: 18 SGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPLYAALGLHPG---MLEKHS 74
Query: 87 EGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLH 146
+ L+ L + ++ KVVA GE GLD E Q +QL L+ + LP+ LH
Sbjct: 75 DVSLEQLQQALERRPAKVVAVGEIGLDL-FGDDPQFERQQWLLDEQLKLAKRYDLPVILH 133
Query: 147 CRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLK-----------TKEN----L 191
R +K + LPR GV+H F G+ QA ++ T
Sbjct: 134 SRRTHDKLAMHLKRH--DLPRTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPRASKTR 191
Query: 192 ETVKSIPEDRLLLETDCP 209
+ + +P LLLETD P
Sbjct: 192 DVIAKLPLASLLLETDAP 209
Score = 111 bits (279), Expect = 6e-28
Identities = 36/168 (21%), Positives = 59/168 (35%), Gaps = 41/168 (24%)
Query: 252 YFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLK- 310
+QL L+ + LP+ LH R +K + LPR GV+H F G+ QA ++
Sbjct: 115 LLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRH--DLPRTGVVHGFSGSLQQAERFVQL 172
Query: 311 ----------TKEN----LETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKK 356
T + + +P LLLETD P + G
Sbjct: 173 GYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNG-FQG------------- 218
Query: 357 EQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
N P ++ ++ +R +++ + NT LF
Sbjct: 219 ----------QPNRPEQAARVFAVLCELRREPADEIAQALLNNTYTLF 256
Score = 46.7 bits (112), Expect = 6e-06
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 427 ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDY 475
+ LY+ +G HP E + L+ L + ++ KVVA GE GLD
Sbjct: 57 QPLYAALGLHPG---MLEKHSDVSLEQLQQALERRPAKVVAVGEIGLDL 102
>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}
Length = 272
Score = 163 bits (416), Expect = 3e-47
Identities = 46/204 (22%), Positives = 89/204 (43%), Gaps = 23/204 (11%)
Query: 27 EPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQS-DERLYSTVGCHPTRCSEFEND 85
+ D+D VL +A A + ++ + + ++L++ + + +G HP + E+
Sbjct: 19 DRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYNGFVLPCLGVHPVQGLPPEDQ 78
Query: 86 PEGYLQSLDKIIKEGG---KKVVAFGEFGLDYDRVQYC---PVETQLKYFRKQLDLSVTH 139
L+ LD + +++A GE GLD+ E Q + +Q+ L+
Sbjct: 79 RSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTGEQKEEQRQVLIRQIQLAKRL 138
Query: 140 KLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLK-----------T- 187
LP+ +H R+A I +++E K ++H+FDG P A++ ++
Sbjct: 139 NLPVNVHSRSAGRPTINLLQEQG---AEKVLLHAFDGRPSVAMEGVRAGYFFSIPPSIIR 195
Query: 188 KENL-ETVKSIPEDRLLLETDCPW 210
+ VK +P + LETD P
Sbjct: 196 SGQKQKLVKQLPLTSICLETDSPA 219
Score = 108 bits (273), Expect = 5e-27
Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 42/165 (25%)
Query: 253 FRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLK-- 310
+Q+ L+ LP+ +H R+A I +++E K ++H+FDG P A++ ++
Sbjct: 128 LIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQG---AEKVLLHAFDGRPSVAMEGVRAG 184
Query: 311 ---------T-KENL-ETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQW 359
+ VK +P + LETD P + P
Sbjct: 185 YFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPA--LGP-EKQ---------V------ 226
Query: 360 KPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
RNEP NI E +A V+G+ E++ + QN L+LF
Sbjct: 227 --------RNEPWNISISAEYIAQVKGISVEEVIEVTTQNALKLF 263
Score = 47.6 bits (114), Expect = 3e-06
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 427 ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGG---KKVVAFGEFGLDY 475
+ +G HP + E+ L+ LD + +++A GE GLD+
Sbjct: 59 GFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDF 110
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237,
structural GENO PSI, protein structure initiative; 2.20A
{Staphylococcus aureus subsp}
Length = 265
Score = 162 bits (413), Expect = 6e-47
Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 23/200 (11%)
Query: 27 EPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDP 86
+ D+ V+ RA AG++++ V G N ++KL + LY +G HP +F
Sbjct: 15 DDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDFLYGIIGWHPVDAIDF---T 71
Query: 87 EGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLH 146
E +L+ ++ + + KV+ GE GLDY P + Q + FRKQ+ L+ KLP+ +H
Sbjct: 72 EEHLEWIESLAQH--PKVIGIGEMGLDYHW-DKSPADVQKEVFRKQIALAKRLKLPIIIH 128
Query: 147 CRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTP---FQAVDSL-------------KTKEN 190
R A D I+I+ E + G++HSF G+P + L K+
Sbjct: 129 NREATQDCIDILLEEHAE-EVGGIMHSFSGSPEIADIVTNKLNFYISLGGPVTFKNAKQP 187
Query: 191 LETVKSIPEDRLLLETDCPW 210
E K + +RLL+ETD P+
Sbjct: 188 KEVAKHVSMERLLVETDAPY 207
Score = 106 bits (268), Expect = 2e-26
Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 41/168 (24%)
Query: 253 FRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTP---FQAVDSL 309
FRKQ+ L+ KLP+ +H R A D I+I+ E + G++HSF G+P + L
Sbjct: 111 FRKQIALAKRLKLPIIIHNREATQDCIDILLEEHAE-EVGGIMHSFSGSPEIADIVTNKL 169
Query: 310 -------------KTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKK 356
K+ E K + +RLL+ETD P+ P + G K
Sbjct: 170 NFYISLGGPVTFKNAKQPKEVAKHVSMERLLVETDAPYLSPHP-YRG---------K--- 216
Query: 357 EQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
RNEPA + + E +A ++G+ E++ +N +LF
Sbjct: 217 -----------RNEPARVTLVAEQIAELKGLSYEEVCEQTTKNAEKLF 253
Score = 45.2 bits (108), Expect = 2e-05
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 427 ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQ 486
+ LY +G HP +F E +L+ ++ + + KV+ GE GLDY P + Q
Sbjct: 54 DFLYGIIGWHPVDAIDF---TEEHLEWIESLAQH--PKVIGIGEMGLDYHW-DKSPADVQ 107
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 1.80A {Thermotoga maritima} SCOP:
c.1.9.12
Length = 268
Score = 161 bits (409), Expect = 3e-46
Identities = 62/199 (31%), Positives = 107/199 (53%), Gaps = 22/199 (11%)
Query: 27 EPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDP 86
+ D + V++ +E ++ G N+EDS SL L+++ +R++ +VG HP + + P
Sbjct: 26 DDDRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTSDRIFCSVGVHPH---DAKEVP 82
Query: 87 EGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLH 146
E +++ L+K K+ +KVVA GE GLD+ R P E Q + F +Q++L+ LPL +H
Sbjct: 83 EDFIEHLEKFAKD--EKVVAIGETGLDFFR-NISPAEVQKRVFVEQIELAGKLNLPLVVH 139
Query: 147 CRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSL---------------KTKENL 191
R+A S+ EI++ + ++GVIH+F A + K +
Sbjct: 140 IRDAYSEAYEILRTESLP-EKRGVIHAFSSDYEWAKKFIDLGFLLGIGGPVTYPKNEALR 198
Query: 192 ETVKSIPEDRLLLETDCPW 210
E VK + + ++LETDCP+
Sbjct: 199 EVVKRVGLEYIVLETDCPF 217
Score = 104 bits (261), Expect = 2e-25
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 40/168 (23%)
Query: 253 FRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSL--- 309
F +Q++L+ LPL +H R+A S+ EI++ + ++GVIH+F A +
Sbjct: 122 FVEQIELAGKLNLPLVVHIRDAYSEAYEILRTESLP-EKRGVIHAFSSDYEWAKKFIDLG 180
Query: 310 ------------KTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKE 357
K + E VK + + ++LETDCP+ +P G K
Sbjct: 181 FLLGIGGPVTYPKNEALREVVKRVGLEYIVLETDCPFLPPQP-FRG---------K---- 226
Query: 358 QWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLFF 405
RNEP + ++E ++ V GV K+ +N R+F
Sbjct: 227 ----------RNEPKYLKYVVETISQVLGVPEAKVDEATTENARRIFL 264
Score = 45.6 bits (109), Expect = 2e-05
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 5/49 (10%)
Query: 427 ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDY 475
+R++ +VG HP + + PE +++ L+K K+ +KVVA GE GLD+
Sbjct: 65 DRIFCSVGVHPH---DAKEVPEDFIEHLEKFAKD--EKVVAIGETGLDF 108
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center
for structural genomics, nysgxrc; 1.90A {Escherichia
coli} SCOP: c.1.9.12
Length = 265
Score = 159 bits (405), Expect = 9e-46
Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 32/225 (14%)
Query: 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLK 60
M +D +L YE + D+D VL +A ++ + T + +
Sbjct: 1 MFLVDSHCHLDGLDYESLHK--------DVDDVLAKAAARDVKFCLAVATTLPSYLHMRD 52
Query: 61 LAQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYC 120
L + + + G HP ++ + ++ L ++ E + VVA GE GLDY
Sbjct: 53 LVGERDNVVFSCGVHPLNQNDPYD-----VEDLRRLAAE--EGVVALGETGLDYYY-TPE 104
Query: 121 PVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTP-- 178
Q + F + + P+ +H R+A++D + I++E GV+H F
Sbjct: 105 TKVRQQESFIHHIQIGRELNKPVIVHTRDARADTLAILREEKVT-DCGGVLHCFTEDRET 163
Query: 179 -FQAVD-----SL------KTKENL-ETVKSIPEDRLLLETDCPW 210
+ +D S + E L + + +P DRLL+ETD P+
Sbjct: 164 AGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPY 208
Score = 101 bits (255), Expect = 1e-24
Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 40/167 (23%)
Query: 253 FRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTP---FQAVD-- 307
F + + P+ +H R+A++D + I++E GV+H F + +D
Sbjct: 113 FIHHIQIGRELNKPVIVHTRDARADTLAILREEKVT-DCGGVLHCFTEDRETAGKLLDLG 171
Query: 308 ---SL------KTKENL-ETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKE 357
S + E L + + +P DRLL+ETD P+ P H G K
Sbjct: 172 FYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVP-HRG---------K---- 217
Query: 358 QWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
N+PA + + E +A ++GV E+L + N RLF
Sbjct: 218 ----------ENQPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLF 254
Score = 40.6 bits (96), Expect = 5e-04
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 427 ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDY 475
+ + + G HP ++ + ++ L ++ E + VVA GE GLDY
Sbjct: 58 DNVVFSCGVHPLNQNDPYD-----VEDLRRLAAE--EGVVALGETGLDY 99
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown
function, plasmid, PSI-2, protein structure initiative;
1.50A {Deinococcus radiodurans}
Length = 254
Score = 145 bits (368), Expect = 1e-40
Identities = 41/197 (20%), Positives = 74/197 (37%), Gaps = 24/197 (12%)
Query: 28 PDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDPE 87
+ RA ++ T +L LA +++ +G HP SE D
Sbjct: 13 YPDPVAVARACEERQLTVLSVTTTPAAWRGTLALAAGRPHVWTALGFHPEVVSERAADLP 72
Query: 88 GYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTH-KLPLFLH 146
+ + L + GE GLD Q F+ L H L +H
Sbjct: 73 WFDRYLP--------ETRFVGEVGLDGSPSLRGTWTQQFAVFQHILRRCEDHGGRILSIH 124
Query: 147 CRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTP---FQAVD-----SL-----KTKENLET 193
R A+S+ + ++ ++H + G+ +A+ S+ +T++
Sbjct: 125 SRRAESEVLNCLEANPR--SGTPILHWYSGSVTELRRAISLGCWFSVGPTMVRTQKGAAL 182
Query: 194 VKSIPEDRLLLETDCPW 210
++S+P DR+L ETD P+
Sbjct: 183 IRSMPRDRVLTETDGPF 199
Score = 99.5 bits (249), Expect = 6e-24
Identities = 29/166 (17%), Positives = 63/166 (37%), Gaps = 43/166 (25%)
Query: 253 FRKQLDLSVTH-KLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTP---FQAVD- 307
F+ L H L +H R A+S+ + ++ ++H + G+ +A+
Sbjct: 106 FQHILRRCEDHGGRILSIHSRRAESEVLNCLEANPR--SGTPILHWYSGSVTELRRAISL 163
Query: 308 ----SL-----KTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQ 358
S+ +T++ ++S+P DR+L ETD P+ Q
Sbjct: 164 GCWFSVGPTMVRTQKGAALIRSMPRDRVLTETDGPF---------LEL-DGQ-------- 205
Query: 359 WKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
P ++ ++E ++ + + ++ I+ +N RL
Sbjct: 206 ---------AALPWDVKSVVEGLSKIWQIPASEVERIVKENVSRLL 242
Score = 42.9 bits (102), Expect = 1e-04
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 427 ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDY 475
+++ +G HP SE D + + L + GE GLD
Sbjct: 51 PHVWTALGFHPEVVSERAADLPWFDRYLPE--------TRFVGEVGLDG 91
>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 3.20A
{Archaeoglobus fulgidus dsm 4304}
Length = 261
Score = 120 bits (303), Expect = 2e-31
Identities = 38/227 (16%), Positives = 79/227 (34%), Gaps = 40/227 (17%)
Query: 26 HEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSL---KLAQSDERLYSTVGCHPTRCSEF 82
E I V + A+ K T +V ++ + + +++ VG HP
Sbjct: 21 KENGIKEVCSLAFFPVKPKYPQTMIDVFRKLTEFEPLRCEAAGVKMHPAVGIHPR---CI 77
Query: 83 ENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLP 142
D E L L++ + VAFGE GL+ + +++ + QL+L+ +P
Sbjct: 78 PPDYEFVLGYLEE------GEWVAFGEIGLELVT------DEEIEVLKSQLELAKRMDVP 125
Query: 143 LFLHCR-----NAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDS------------L 185
+H A +EI++ + H T +++ L
Sbjct: 126 CIIHTPRGNKLKATRKTLEILESLDFPADLAVIDHVNFETLDMVLETEYWIGLTVQPGKL 185
Query: 186 KTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKK 232
++ V +R +L +D + + + K+++
Sbjct: 186 SAEDAARIVAEHGPERFMLNSDAGY---RDVEI--TTVAEAAVKIEE 227
Score = 89.3 bits (222), Expect = 3e-20
Identities = 20/170 (11%), Positives = 46/170 (27%), Gaps = 51/170 (30%)
Query: 252 YFRKQLDLSVTHKLPLFLHCR-----NAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAV 306
+ QL+L+ +P +H A +EI++ + H T +
Sbjct: 111 VLKSQLELAKRMDVPCIIHTPRGNKLKATRKTLEILESLDFPADLAVIDHVNFETLDMVL 170
Query: 307 DS------------LKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKV 354
++ L ++ V +R +L +D +
Sbjct: 171 ETEYWIGLTVQPGKLSAEDAARIVAEHGPERFMLNSDAGY-------------------- 210
Query: 355 KKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
E + + + V RE++ + +N +
Sbjct: 211 ------------RDVEITTVAEAAVKIE--EAVGREEMEKVARENARKFL 246
Score = 40.8 bits (96), Expect = 6e-04
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 427 ERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDY 475
+++ VG HP D E L L++ + VAFGE GL+
Sbjct: 64 VKMHPAVGIHPR---CIPPDYEFVLGYLEE------GEWVAFGEIGLEL 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 6e-06
Identities = 75/484 (15%), Positives = 139/484 (28%), Gaps = 198/484 (40%)
Query: 13 AMYEGFYSSKNQKHE-PDIDHVLNRAWNAGLEKIIVTGTNVEDSISSL------KLAQSD 65
+ G+ SS + + D VLN E + G ++ + L L ++
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTE-FENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 66 E--RLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVA-FGEFG-----LD---- 113
E + Y T R F+ +L + + EG ++VA FG G +
Sbjct: 121 ELIKNYITARIMAKR--PFDKKSNS---ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 114 -YDRVQYCPVETQL-------------------KYFRKQLDL-----------------S 136
Y Y + L K F + L++ S
Sbjct: 176 LYQT--YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 137 VTHKLPL-----FLH----CRN----------------------------AKSD----FI 155
+ PL H + A++D F
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 156 EIMK--------------EYAPK--LPRKGVIHSFDG-----TPFQAVDSLKTKENLETV 194
++ E P LP + S + +P ++ +L T+E ++
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL-TQEQVQDY 352
Query: 195 -----KSIPEDRLLLETDCPWCEVK----PSH---AGFA---Y-IRTQHEKVKKEQWKPD 238
+P + + E+ + +G Y + K K P
Sbjct: 353 VNKTNSHLPAGKQV--------EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA----PS 400
Query: 239 KMVKSRNEPANIVYF--RKQLDLSVTHK-LPLFL--HC---RNA----KSDFIEIMKEYA 286
+ +SR + F RK L +++ LP+ H A D ++ +
Sbjct: 401 GLDQSR------IPFSERK---LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 287 P---KLPRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPED--RLLLETDCPW---CEVK 338
++P V +FDG+ + + SI E ++ W + K
Sbjct: 452 AKDIQIP---VYDTFDGSDLRVLSG-----------SISERIVDCIIRLPVKWETTTQFK 497
Query: 339 PSHA 342
+H
Sbjct: 498 ATHI 501
Score = 38.1 bits (88), Expect = 0.007
Identities = 44/286 (15%), Positives = 87/286 (30%), Gaps = 105/286 (36%)
Query: 47 VTGTNVEDSISSLKLAQSD--ERLYST----------VGCHPTRCSE-FENDPEGYL-QS 92
TG + ++++ +A++D E + + +G RC E + P L S
Sbjct: 270 ATGH-SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV---RCYEAY---PNTSLPPS 322
Query: 93 LDKIIKEGGKKV------VAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLH 146
+ + E + V ++ + + Q V+ + L ++ L
Sbjct: 323 ILEDSLENNEGVPSPMLSIS------NLTQEQ---VQDYVNKTNSHLPAGKQVEISLV-- 371
Query: 147 CRNAKSDFI-------------EIMKEYAP------KLP---RKGVI-HSFD--GTPFQA 181
N + + + K AP ++P RK + F +PF
Sbjct: 372 --NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH- 428
Query: 182 VDS--LKTKENLETVKSIPEDRLLLETDCPW------CEVKPSHAGFAYIRTQHEKVKKE 233
S L I +D L++ + + V + G + +R +
Sbjct: 429 --SHLLV-----PASDLINKD--LVKNNVSFNAKDIQIPVYDTFDG-SDLRVLSGSI--- 475
Query: 234 QWKPDKMVKS-RNEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDF 278
+++V P V + TH L DF
Sbjct: 476 ---SERIVDCIIRLP---VKWETTTQFKATHIL-----------DF 504
Score = 30.8 bits (69), Expect = 1.2
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 31/82 (37%)
Query: 396 IHQNTLRLFFPHELPTPT-----------------RFNTCVSFAPYEIERLYSTVGCHPT 438
+ L+ F LP PT +F + + +E S VG
Sbjct: 28 FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF---LGYVSSLVEP--SKVG-QFD 81
Query: 439 RC-----SEFENDPEGYLQSLD 455
+ +EFEN YL+ D
Sbjct: 82 QVLNLCLTEFENC---YLEGND 100
>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A
{Escherichia coli} SCOP: c.1.9.3
Length = 291
Score = 43.4 bits (102), Expect = 9e-05
Identities = 24/218 (11%), Positives = 54/218 (24%), Gaps = 45/218 (20%)
Query: 29 DIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDPEG 88
+ +L+ G+ + TG + +S + L +
Sbjct: 61 NAQFMLDVMRETGINVVACTGYYQDAFFPEHVATRSVQELA-----------------QE 103
Query: 89 YLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCR 148
+ +++ I K E G ++ + K F P+ H
Sbjct: 104 MVDEIEQGIDGTELKAGIIAEIGTSEGKIT----PLEEKVFIAAALAHNQTGRPISTHTS 159
Query: 149 NAKSDFIEI----------------------MKEYAPKLPRKGVIHSFDGTPFQAV--DS 184
+ ++ + K+ G FD + D
Sbjct: 160 FSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYPDE 219
Query: 185 LKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAY 222
+ +R++L D ++ G+ Y
Sbjct: 220 KRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGY 257
Score = 32.6 bits (74), Expect = 0.27
Identities = 13/119 (10%), Positives = 27/119 (22%), Gaps = 24/119 (20%)
Query: 252 YFRKQLDLSVTHKLPLFLHCRNAKSDFIEI----------------------MKEYAPKL 289
F P+ H + ++ + K+
Sbjct: 139 VFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKM 198
Query: 290 PRKGVIHSFDGTPFQAV--DSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAY 346
G FD + D + +R++L D ++ G+ Y
Sbjct: 199 IDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGY 257
>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities,
enzyme evolution, hyperthermophilic, lactonase,
hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus
solfataricus} PDB: 2vc5_A*
Length = 314
Score = 38.9 bits (90), Expect = 0.002
Identities = 30/234 (12%), Positives = 59/234 (25%), Gaps = 58/234 (24%)
Query: 29 DIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDPEG 88
DI + G+ + TG + + L +S + + + + +G
Sbjct: 75 DIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLF------IHDIKEGIQG 128
Query: 89 YLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCR 148
F + D + + K R + K+P+ H
Sbjct: 129 T------------LNKAGFVKIAADEPGIT----KDVEKVIRAAAIANKETKVPIITHSN 172
Query: 149 NAKSDFIEIMKE-----------------------YAPKLPRKGVIHSFD--GTPFQAVD 183
+ +E + Y K+ KG D G
Sbjct: 173 AHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPV 232
Query: 184 SLKTKENLETVKSIPEDRLLLETDC----PWCEVKPSH-------AGFAYIRTQ 226
+ + L +K D++++ D W KP + I
Sbjct: 233 DKRNETTLRLIKDGYSDKIMISHDYCCTIDWGTAKPEYKPKLAPRWSITLIFED 286
Score = 33.5 bits (76), Expect = 0.14
Identities = 23/178 (12%), Positives = 50/178 (28%), Gaps = 41/178 (23%)
Query: 252 YFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKE-----------------------YAPK 288
R + K+P+ H + +E + Y K
Sbjct: 152 VIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKK 211
Query: 289 LPRKGVIHSFD--GTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAY 346
+ KG D G + + L +K D++++ D +
Sbjct: 212 IADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCT------IDWGT 265
Query: 347 IRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
+ +++ +W + + + L+ GV E + I +N + F
Sbjct: 266 AKPEYKPKLAPRWSITLI------FEDTIPFLKR----NGVNEEVIATIFKENPKKFF 313
>3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX;
1.60A {Listeria monocytogenes serotype 4b
strorganism_taxid}
Length = 330
Score = 32.4 bits (73), Expect = 0.28
Identities = 33/226 (14%), Positives = 60/226 (26%), Gaps = 37/226 (16%)
Query: 28 PDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQSDERLYSTVGCHPTRCSEFENDPE 87
+ V + G++ + G N + + + + +
Sbjct: 73 RRVLDVAQISKETGIQIVGTAGFNKSFLWDGKIKPEL-KPIIGDFETYY--EWIENTTTD 129
Query: 88 GYLQSLDKIIKE---GGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDLSVTHKLPLF 144
+ + ++ G +FG Y+ + K R K P+
Sbjct: 130 KLTEFVVNEVENGLEGTPYKAGQVKFGTGYNM----ITPLEEKTIRAVARAHHETKAPIH 185
Query: 145 LHCRNAKSDF--IEIMKEYAPKLPRKGVIH--------------------SFDGTPFQAV 182
H IEI+K+ L + H SFDG
Sbjct: 186 SHTEAGTMALEQIEILKQENIPLEYLSIGHMDRNLDPYYHKQVAKTGAFMSFDGIAKIKY 245
Query: 183 --DSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHA---GFAYI 223
+S + L V ED++L+ D + G YI
Sbjct: 246 APESARIAAILYLVSEGFEDQILVSGDTARKTYYKHYGHGPGLEYI 291
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.47
Identities = 31/215 (14%), Positives = 63/215 (29%), Gaps = 67/215 (31%)
Query: 270 HCRNAKSDFIEIMKEYAPKLP--RKGVIHSFDGTPFQAV-DSLK---TKENLETVKSIPE 323
H + + E +Y L + +FD + V D K +KE ++ + +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFD---CKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 324 D----RLLLETDCPWC-EVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQIL 378
L W K ++ ++ + + +P+ + ++
Sbjct: 60 AVSGTLRLF-----WTLLSKQEEMVQKFVEEVLRI--NYKFLMSPIKTEQRQPSMMTRMY 112
Query: 379 EIVAAVRGVEREKLGPIIHQNTLRLFFPHELPTPTRFNTCVSFAPYEIER--LYSTVGCH 436
+R++L +N FA Y + R Y +
Sbjct: 113 I-------EQRDRL----------------------YNDNQVFAKYNVSRLQPYLKL--- 140
Query: 437 PTRCSEFENDPEGYLQSLDKIIKEG----GKKVVA 467
R + E P ++ +G GK VA
Sbjct: 141 --RQALLELRPAKN------VLIDGVLGSGKTWVA 167
>3ojg_A Phosphotriesterase; (beta/alpha)8 barrel, lactonase, hydrolase;
HET: KCX HL4; 1.60A {Geobacillus kaustophilus} PDB:
3orw_A* 3f4c_A* 3f4d_A*
Length = 330
Score = 31.2 bits (70), Expect = 0.74
Identities = 26/192 (13%), Positives = 52/192 (27%), Gaps = 42/192 (21%)
Query: 240 MVKSRNEPANIVYFRKQLDLSVTHKLPLFLHCRNAK--SDFIEIMKEYAPKLPRKGVIH- 296
K R ++FR + H + + + E+ + + H
Sbjct: 152 SSKGRITEYEKMFFRAAARAQKETGAVIITHTQEGTMGPEQAAYLLEHGADPKKIVIGHM 211
Query: 297 -------------------SFDGTPFQAVDSLKTKEN-----LETVKSIPEDRLLLETDC 332
+FD Q + T E L ++ E +++L +
Sbjct: 212 CGNTDPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGYEKQIMLSHNT 271
Query: 333 PWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKL 392
G + + + W + + NI+ L+ G+ E L
Sbjct: 272 VN-----VWLGRPFTLPEPFAEMMKNWHVEHL------FVNIIPALK----NEGIRDEVL 316
Query: 393 GPIIHQNTLRLF 404
+ N LF
Sbjct: 317 EQMFIGNPAALF 328
Score = 29.7 bits (66), Expect = 2.0
Identities = 16/140 (11%), Positives = 36/140 (25%), Gaps = 32/140 (22%)
Query: 123 ETQLKYFRKQLDLSVTHKLPLFLHCRNAK--SDFIEIMKEYAPKLPRKGVIH-------- 172
E + +FR + H + + + E+ + + H
Sbjct: 159 EYEKMFFRAAARAQKETGAVIITHTQEGTMGPEQAAYLLEHGADPKKIVIGHMCGNTDPD 218
Query: 173 ------------SFDGTPFQAVDSLKTKEN-----LETVKSIPEDRLLLETDCPWCEVKP 215
+FD Q + T E L ++ E +++L +
Sbjct: 219 YHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGYEKQIMLSHNTVN----- 273
Query: 216 SHAGFAYIRTQHEKVKKEQW 235
G + + + W
Sbjct: 274 VWLGRPFTLPEPFAEMMKNW 293
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.88
Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 388 EREKLGPIIHQNTLRLFFPHELP 410
E++ L + Q +L+L+ P
Sbjct: 18 EKQALKKL--QASLKLYADDSAP 38
Score = 28.8 bits (63), Expect = 2.3
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 16/35 (45%)
Query: 158 MKEYAPKLPRKGVIHSFDGTPFQAVDSLKTKENLE 192
+K YA D P +L K +E
Sbjct: 29 LKLYAD-----------DSAP-----ALAIKATME 47
Score = 28.8 bits (63), Expect = 2.3
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 16/35 (45%)
Query: 282 MKEYAPKLPRKGVIHSFDGTPFQAVDSLKTKENLE 316
+K YA D P +L K +E
Sbjct: 29 LKLYAD-----------DSAP-----ALAIKATME 47
>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG
MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB:
1qno_A* 1qnq_A* 1qnp_A* 1qns_A*
Length = 344
Score = 29.8 bits (66), Expect = 2.1
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 63 QSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQY 119
Q + T +P G++Q+ GK V F E+G +
Sbjct: 231 QIKSLDFGTFHLYPDSWGTNYTWGNGWIQTHAAACLAAGKPCV-FEEYGAQQNPCTN 286
Score = 29.0 bits (64), Expect = 3.7
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 430 YSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQY 480
+ T +P G++Q+ GK V F E+G +
Sbjct: 237 FGTFHLYPDSWGTNYTWGNGWIQTHAAACLAAGKPCV-FEEYGAQQNPCTN 286
>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta
barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB:
2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A*
3fdk_A* 3htw_A*
Length = 339
Score = 29.3 bits (65), Expect = 2.7
Identities = 33/180 (18%), Positives = 56/180 (31%), Gaps = 42/180 (23%)
Query: 252 YFRKQLDLSVTHKLPLFLHCRNAKS--DFIEIMKEYAPKLPRKGVIH------------- 296
+FR + +P+ H + + E++ R + H
Sbjct: 174 FFRAAARVQRETGVPIITHTQEGQQGPQQAELLTSLGADPARIMIGHMDGNTDPAYHRET 233
Query: 297 -------SFDGTPFQA-VDSLKTKENLETVKSI----PEDRLLLETDCPWCEVKPSHAGF 344
+FD Q V + E L + ++ DRLLL D W G
Sbjct: 234 LRHGVSIAFDRIGLQGMVGTPTDAERLSVLTTLLGEGYADRLLLSHDSIW-----HWLGR 288
Query: 345 AYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
+ + W P + +I+ L RG+ E++G + N RLF
Sbjct: 289 PPAIPEAALPAVKDWHPLHISD------DILPDLRR----RGITEEQVGQMTVGNPARLF 338
Score = 29.3 bits (65), Expect = 3.0
Identities = 23/143 (16%), Positives = 40/143 (27%), Gaps = 32/143 (22%)
Query: 123 ETQLKYFRKQLDLSVTHKLPLFLHCRNAKS--DFIEIMKEYAPKLPRKGVIH-------- 172
+ +FR + +P+ H + + E++ R + H
Sbjct: 169 PYEQLFFRAAARVQRETGVPIITHTQEGQQGPQQAELLTSLGADPARIMIGHMDGNTDPA 228
Query: 173 ------------SFDGTPFQA-VDSLKTKENLETVKSI----PEDRLLLETDCPWCEVKP 215
+FD Q V + E L + ++ DRLLL D W
Sbjct: 229 YHRETLRHGVSIAFDRIGLQGMVGTPTDAERLSVLTTLLGEGYADRLLLSHDSIW----- 283
Query: 216 SHAGFAYIRTQHEKVKKEQWKPD 238
G + + W P
Sbjct: 284 HWLGRPPAIPEAALPAVKDWHPL 306
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma
synoviae} PDB: 3msr_A*
Length = 363
Score = 29.4 bits (65), Expect = 3.2
Identities = 16/124 (12%), Positives = 29/124 (23%), Gaps = 29/124 (23%)
Query: 123 ETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEI-----------------------MK 159
+LK S+ P+ +H +
Sbjct: 165 RLELKALEVAARTSILTGCPILVHTQLGTMALEVAKHLIGFGANPDKIQISHLNKNPDKY 224
Query: 160 EYAPKLPRKGVIHSFDGTPFQAVDSLKTKENLETVKSI----PEDRLLLETDCPWCEVKP 215
Y + GV FDG V E +K + + + L D +
Sbjct: 225 YYEKVIKETGVTLCFDG--PDRVKYYPDSLLAENIKYLVDKGLQKHITLSLDAGRILYQR 282
Query: 216 SHAG 219
++
Sbjct: 283 NYGL 286
>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET:
KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A*
1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A
1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A*
1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...
Length = 330
Score = 28.9 bits (64), Expect = 3.9
Identities = 20/189 (10%), Positives = 46/189 (24%), Gaps = 42/189 (22%)
Query: 62 AQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGE-FGLDYDRVQYC 120
+D + + G L ++E + G G+
Sbjct: 84 RAADVHIVAATGLWFDPPLSMRLRSVEELT--QFFLREIQYGIEDTGIRAGIIKVATTGK 141
Query: 121 PVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMK--------------------- 159
Q + S+ +P+ H ++ D +
Sbjct: 142 ATPFQELVLKAAARASLATGVPVTTHTAASQRDGEQQAAIFESEGLSPSRVCIGHSDDTD 201
Query: 160 --EYAPKLPRKGVIHSFDGTPFQA------------VDSLKTKENLETVKSI----PEDR 201
Y L +G + D P+ A + + +K++ +
Sbjct: 202 DLSYLTALAARGYLIGLDHIPYSAIGLEDNASASALLGIRSWQTRALLIKALIDQGYMKQ 261
Query: 202 LLLETDCPW 210
+L+ D +
Sbjct: 262 ILVSNDWTF 270
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix,
anti-parrallel beta sheet, double straded anti-parallel
beta helix, metal binding protein; 2.00A {Mus musculus}
Length = 404
Score = 27.7 bits (61), Expect = 8.8
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 157 IMKEYAPKLPRKGVIHSFDGTPFQAVDSLKTKE---NLETVKSIPEDRLLLETDCPWC 211
+ +AP+ VI +D TP QA E + + + L T+CP C
Sbjct: 169 VENPHAPQKDNALVITYYDRTPQQAEMLGLQAEAPEEKAEEEDLRNEVLQFNTNCPEC 226
Score = 27.7 bits (61), Expect = 8.8
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 281 IMKEYAPKLPRKGVIHSFDGTPFQAVDSLKTKE---NLETVKSIPEDRLLLETDCPWC 335
+ +AP+ VI +D TP QA E + + + L T+CP C
Sbjct: 169 VENPHAPQKDNALVITYYDRTPQQAEMLGLQAEAPEEKAEEEDLRNEVLQFNTNCPEC 226
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.414
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,464,931
Number of extensions: 439989
Number of successful extensions: 1233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1135
Number of HSP's successfully gapped: 75
Length of query: 487
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 390
Effective length of database: 3,993,456
Effective search space: 1557447840
Effective search space used: 1557447840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)