RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4448
(487 letters)
>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC)
{Escherichia coli [TaxId: 562]}
Length = 260
Score = 91.2 bits (225), Expect = 2e-21
Identities = 69/264 (26%), Positives = 114/264 (43%), Gaps = 52/264 (19%)
Query: 4 IDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQ 63
DIG NL + + D D V+ A++AG+ +++TGTN+ +S + KLA+
Sbjct: 2 FDIGVNLTSSQFAK-----------DRDDVVACAFDAGVNGLLITGTNLRESQQAQKLAR 50
Query: 64 SDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVE 123
+ST G HP S+++ E + L +VVA GE GLD++R P E
Sbjct: 51 QYSSCWSTAGVHPHDSSQWQAATEEAIIELAA-----QPEVVAIGECGLDFNRNFSTPEE 105
Query: 124 TQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLP---------------RK 168
+ + F QL ++ +P+F+HCR+A F+ +++ + KLP
Sbjct: 106 QE-RAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREEMQAC 164
Query: 169 GVIHSFDGTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHE 228
+ G D + E E + IP ++LL+ETD P+ +
Sbjct: 165 VAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDL------------ 212
Query: 229 KVKKEQWKPDKMVKSRNEPANIVY 252
K RNEPA++ +
Sbjct: 213 --------TPKPSSRRNEPAHLPH 228
Score = 65.4 bits (158), Expect = 1e-12
Identities = 44/239 (18%), Positives = 76/239 (31%), Gaps = 47/239 (19%)
Query: 193 TVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNE------ 246
++ + + L H + + + V + E
Sbjct: 38 NLRESQQAQKLARQYSSCWSTAGVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFN 97
Query: 247 ------PANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLP---------- 290
F QL ++ +P+F+HCR+A F+ +++ + KLP
Sbjct: 98 RNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGT 157
Query: 291 -----RKGVIHSFDGTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFA 345
+ G D + E E + IP ++LL+ETD P+ +
Sbjct: 158 REEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDL----- 212
Query: 346 YIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
K RNEPA++ IL+ +A RG + L N LF
Sbjct: 213 ---------------TPKPSSRRNEPAHLPHILQRIAHWRGEDAAWLAATTDANVKTLF 256
>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga
maritima [TaxId: 2336]}
Length = 260
Score = 83.0 bits (204), Expect = 1e-18
Identities = 65/264 (24%), Positives = 107/264 (40%), Gaps = 57/264 (21%)
Query: 4 IDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLKLAQ 63
+D A+L ++ D + V++ +E ++ G N+EDS SL L++
Sbjct: 6 VDTHAHLHFHQFDD-----------DRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSK 54
Query: 64 SDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVE 123
+ +R++ +VG HP E D +L+ K K VA GE G P E
Sbjct: 55 TSDRIFCSVGVHPHDAKEVPEDFIEHLEKFAKDEKV-----VAIGETG-LDFFRNISPAE 108
Query: 124 TQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVD 183
Q + F +Q++L+ LPL +H R+A S+ EI++ + ++GVIH+F A
Sbjct: 109 VQKRVFVEQIELAGKLNLPLVVHIRDAYSEAYEILRTESLP-EKRGVIHAFSSDYEWAKK 167
Query: 184 SLK---------------TKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHE 228
+ + E VK + + ++LETDCP+
Sbjct: 168 FIDLGFLLGIGGPVTYPKNEALREVVKRVGLEYIVLETDCPFL----------------- 210
Query: 229 KVKKEQWKPDKMVKSRNEPANIVY 252
P RNEP + Y
Sbjct: 211 -------PPQPFRGKRNEPKYLKY 227
Score = 69.2 bits (168), Expect = 8e-14
Identities = 48/243 (19%), Positives = 88/243 (36%), Gaps = 44/243 (18%)
Query: 181 AVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKM 240
V+ +K++L+ K+ + P + ++ + K +
Sbjct: 40 GVNLEDSKKSLDLSKTSDRIFCSVGVH-PHDAKEVPEDFIEHLEKFAKDEKVVAIGETGL 98
Query: 241 VKSRNEP---ANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHS 297
RN F +Q++L+ LPL +H R+A S+ EI++ + ++GVIH+
Sbjct: 99 DFFRNISPAEVQKRVFVEQIELAGKLNLPLVVHIRDAYSEAYEILRTESLP-EKRGVIHA 157
Query: 298 FDGTPFQAVDSLK---------------TKENLETVKSIPEDRLLLETDCPWCEVKPSHA 342
F A + + E VK + + ++LETDCP+
Sbjct: 158 FSSDYEWAKKFIDLGFLLGIGGPVTYPKNEALREVVKRVGLEYIVLETDCPFL------- 210
Query: 343 GFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLR 402
P RNEP + ++E ++ V GV K+ +N R
Sbjct: 211 -----------------PPQPFRGKRNEPKYLKYVVETISQVLGVPEAKVDEATTENARR 253
Query: 403 LFF 405
+F
Sbjct: 254 IFL 256
>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH
{Escherichia coli [TaxId: 562]}
Length = 265
Score = 80.5 bits (197), Expect = 1e-17
Identities = 52/267 (19%), Positives = 92/267 (34%), Gaps = 56/267 (20%)
Query: 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLK 60
M +D +L YE + D+D VL +A ++ + T + +
Sbjct: 1 MFLVDSHCHLDGLDYESLH--------KDVDDVLAKAAARDVKFCLAVATTLPSYLHMRD 52
Query: 61 LAQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYC 120
L + + + G HP ++ + + + + + VVA GE GLDY
Sbjct: 53 LVGERDNVVFSCGVHPLNQNDPYDVEDLRRLAAE-------EGVVALGETGLDYYYTPET 105
Query: 121 PVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQ 180
V Q + + P+ +H R+A++D + I++E GV+H F
Sbjct: 106 KVRQQESFIHHI-QIGRELNKPVIVHTRDARADTLAILREEKVT-DCGGVLHCFTEDRET 163
Query: 181 AVDSLK---------------TKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRT 225
A L ++ + + +P DRLL+ETD P+
Sbjct: 164 AGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYL-------------- 209
Query: 226 QHEKVKKEQWKPDKMVKSRNEPANIVY 252
P N+PA +
Sbjct: 210 ----------APVPHRGKENQPAMVRD 226
Score = 65.1 bits (157), Expect = 2e-12
Identities = 37/168 (22%), Positives = 63/168 (37%), Gaps = 40/168 (23%)
Query: 252 YFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKT 311
F + + P+ +H R+A++D + I++E GV+H F A L
Sbjct: 112 SFIHHIQIGRELNKPVIVHTRDARADTLAILREEKVT-DCGGVLHCFTEDRETAGKLLDL 170
Query: 312 ---------------KENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKK 356
++ + + +P DRLL+ETD P+
Sbjct: 171 GFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYL--------------------- 209
Query: 357 EQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
P N+PA + + E +A ++GV E+L + N RLF
Sbjct: 210 ---APVPHRGKENQPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLF 254
>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV
{Escherichia coli [TaxId: 562]}
Length = 259
Score = 78.9 bits (193), Expect = 4e-17
Identities = 63/267 (23%), Positives = 95/267 (35%), Gaps = 56/267 (20%)
Query: 1 MKYIDIGANLKDAMYEGFYSSKNQKHEPDIDHVLNRAWNAGLEKIIVTGTNVEDSISSLK 60
++ID + + G D + L RA AG+ KIIV T E+ L
Sbjct: 3 CRFIDTHCHFDFPPFSG-----------DEEASLQRAAQAGVGKIIVPATEAENFARVLA 51
Query: 61 LAQSDERLYSTVGCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYC 120
LA++ + LY+ +G HP E + L+ L + ++ KVVA GE GLD
Sbjct: 52 LAENYQPLYAALGLHPGML---EKHSDVSLEQLQQALERRPAKVVAVGEIGLDLFGDDPQ 108
Query: 121 PVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQ 180
Q +QL L+ + LP+ LH R +K + PR GV+H F G+ Q
Sbjct: 109 FERQQ-WLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDL--PRTGVVHGFSGSLQQ 165
Query: 181 ---------------AVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRT 225
+ + + + + +P LLLETD P
Sbjct: 166 AERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPD--------------- 210
Query: 226 QHEKVKKEQWKPDKMVKSRNEPANIVY 252
+ N P
Sbjct: 211 ---------MPLNGFQGQPNRPEQAAR 228
Score = 59.3 bits (142), Expect = 2e-10
Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 41/168 (24%)
Query: 252 YFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQ------- 304
+QL L+ + LP+ LH R +K + PR GV+H F G+ Q
Sbjct: 115 LLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDL--PRTGVVHGFSGSLQQAERFVQL 172
Query: 305 --------AVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKK 356
+ + + + + +P LLLETD P
Sbjct: 173 GYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPD---------------------- 210
Query: 357 EQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQNTLRLF 404
+ N P ++ ++ +R +++ + NT LF
Sbjct: 211 --MPLNGFQGQPNRPEQAARVFAVLCELRREPADEIAQALLNNTYTLF 256
>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein
{Escherichia coli [TaxId: 562]}
Length = 291
Score = 74.2 bits (181), Expect = 3e-15
Identities = 24/231 (10%), Positives = 53/231 (22%), Gaps = 38/231 (16%)
Query: 26 HEPDIDHVLNRAWNAGLEKIIV--TGTNVEDSISSLKLA-QSDERLYSTVGCHPTRCSEF 82
I +N G+ +I ++ L + ++ + + G +
Sbjct: 31 QYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQDAFFPE 90
Query: 83 ENDP-------EGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLDL 135
+ + +++ I K E G + K F
Sbjct: 91 HVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGTSE----GKITPLEEKVFIAAALA 146
Query: 136 SVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIH----------------------S 173
P+ H + ++ A + V
Sbjct: 147 HNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQ 206
Query: 174 FDG--TPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKPSHAGFAY 222
FD D + +R++L D ++ G+ Y
Sbjct: 207 FDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGY 257
Score = 59.2 bits (142), Expect = 2e-10
Identities = 16/185 (8%), Positives = 35/185 (18%), Gaps = 49/185 (26%)
Query: 244 RNEPANIVYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIH------- 296
+ P F P+ H + ++ A + V
Sbjct: 131 KITPLEEKVFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKD 190
Query: 297 ---------------SFDG--TPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWCEVKP 339
FD D + +R++L D
Sbjct: 191 NLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDITR----- 245
Query: 340 SHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPIIHQN 399
K + + + G + + ++ +N
Sbjct: 246 -------------------RSHLKANGGYGYDYLLTTFIPQLRQ-SGFSQADVDVMLREN 285
Query: 400 TLRLF 404
+ F
Sbjct: 286 PSQFF 290
>d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE)
{Pseudomonas diminuta [TaxId: 293]}
Length = 331
Score = 58.2 bits (139), Expect = 6e-10
Identities = 23/236 (9%), Positives = 52/236 (22%), Gaps = 43/236 (18%)
Query: 18 FYSSKNQKHEPDIDHVLNRAWNAGLEKII-VTGTNVEDSISSLK--LAQSDERLYSTVGC 74
+ + L RA AG+ I+ V+ ++ +S L +D + + G
Sbjct: 37 EFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVAATGL 96
Query: 75 HPTRCSEFENDPEGYLQSLDKIIKEGGKKVVAFGEFGLDYDRVQYCPVETQLKYFRKQLD 134
L + G + + Q +
Sbjct: 97 WFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKVAT-TGKATPFQELVLKAAAR 155
Query: 135 LSVTHKLPLFLHCRNAKSDFIEIMK-----------------------EYAPKLPRKGVI 171
S+ +P+ H ++ D + Y L +G +
Sbjct: 156 ASLATGVPVTTHTAASQRDGEQQAAIFESEGLSPSRVCIGHSDDTDDLSYLTALAARGYL 215
Query: 172 HSF----------------DGTPFQAVDSLKTKENLETVKSIPEDRLLLETDCPWC 211
+ + ++L+ D +
Sbjct: 216 IGLDHIPHSAIGLEDNASASALLGIRSWQTRALLIKALIDQGYMKQILVSNDWLFG 271
Score = 42.0 bits (97), Expect = 9e-05
Identities = 19/267 (7%), Positives = 52/267 (19%), Gaps = 39/267 (14%)
Query: 155 IEIMKEYAPKLPRKGVIH-----SFDGTPFQAVDSLKTKENLETVKSIPEDRLLLETDCP 209
E+ + + + S + + +E ++ +++
Sbjct: 80 AEVSRAADVHIVAATGLWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKVATT 139
Query: 210 WCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVYFRKQLDLSVTHKLPLFL 269
+ + + + ++ +
Sbjct: 140 GKATPFQELVL---KAAARASLATGVPVTTHTAASQRDGEQQAAIFESEGLSPSRVCIGH 196
Query: 270 HCRNAKSDFIEIMKEYAPKLPRKGVIHSF---------DGTPFQAVDSLKTKENLETVKS 320
++ + + + HS + +
Sbjct: 197 SDDTDDLSYLTALAARGYLIGLDHIPHSAIGLEDNASASALLGIRSWQTRALLIKALIDQ 256
Query: 321 IPEDRLLLETDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEI 380
++L+ D + V R P + I
Sbjct: 257 GYMKQILVSNDWLFGFSSYV-------------------TNIMDVMDRVNPDGMAFIPLR 297
Query: 381 VAAV---RGVEREKLGPIIHQNTLRLF 404
V +GV +E L I N R
Sbjct: 298 VIPFLREKGVPQETLAGITVTNPARFL 324
>d1t95a3 d.58.11.3 (A:162-234) Hypothetical protein AF0491,
C-terminal domain {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 73
Score = 27.7 bits (62), Expect = 0.68
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 337 VKPSHAGFAY-IRTQHEKVKKEQWKPDKMVKSRNEPANIVQILEIVAAVRGVEREKLGPI 395
+ P H G A V +E+W+ D + + ++ I + + G + LG +
Sbjct: 15 IPPEHTGRAISALYNFGGVTREEWQRD---------GSWICVMRIPSGMYGDLMDLLGKV 65
Query: 396 IHQN 399
Sbjct: 66 AKGE 69
Score = 26.5 bits (59), Expect = 1.9
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 213 VKPSHAGFAY-IRTQHEKVKKEQWKPD 238
+ P H G A V +E+W+ D
Sbjct: 15 IPPEHTGRAISALYNFGGVTREEWQRD 41
>d2hbva1 c.1.9.15 (A:3-333) 2-amino-3-carboxymuconate 6-semialdehyde
decarboxylase NbaD {Pseudomonas fluorescens [TaxId:
294]}
Length = 331
Score = 27.5 bits (59), Expect = 3.8
Identities = 20/139 (14%), Positives = 39/139 (28%), Gaps = 10/139 (7%)
Query: 206 TDCPWCEVKPSHAGFAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVYFRKQLDLSVTHKL 265
D + + E R + + F
Sbjct: 177 WDMMGGQRMKKWMLPWLVAMPAETQLAILSLILSGAFERIPKSLKICFG-----HGGGSF 231
Query: 266 PLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPEDR 325
L + +I++E P+ P + V F + +L+ V + EDR
Sbjct: 232 AFLLGRVDNAWRHRDIVREDCPRPPSEYVDRFFVDSAVFNPGALE-----LLVSVMGEDR 286
Query: 326 LLLETDCPWCEVKPSHAGF 344
++L +D P+ + G
Sbjct: 287 VMLGSDYPFPLGEQKIGGL 305
>d2plca_ c.1.18.2 (A:) Phosphatidylinositol-specific phospholipase C
{Listeria monocytogenes [TaxId: 1639]}
Length = 274
Score = 27.5 bits (60), Expect = 4.0
Identities = 8/64 (12%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 114 YDRVQYCPVETQLKYFRKQLDLSVTHKLPLFLHCRNAKSDFIEIMKEYAPKL---PRKGV 170
+ Q + QL+ + +D+ L ++ + +++ L P++ +
Sbjct: 42 LAQTQTMSLYQQLEAGIRYIDIRAKDNLNIYHGPIFLNASLSGVLETITQFLKKNPKETI 101
Query: 171 IHSF 174
I
Sbjct: 102 IMRL 105
>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor
receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}
Length = 299
Score = 27.2 bits (59), Expect = 4.6
Identities = 19/159 (11%), Positives = 49/159 (30%), Gaps = 5/159 (3%)
Query: 147 CRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTPFQAVDSLKTKENLETVKSIPEDRLLLET 206
D + A K+ ++G HS + L + V ++ +
Sbjct: 32 ADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGA--CTKP 89
Query: 207 DCPWCEVKPSHAG---FAYIRTQHEKVKKEQWKPDKMVKSRNEPANIVYFRKQLDLSVTH 263
P + Y+R++ + + P+ + K +++ + Q+ +
Sbjct: 90 GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEF 149
Query: 264 KLPLFLHCRNAKSDFIEIMKEYAPKLPRKGVIHSFDGTP 302
R+ + I + ++ K+ G+ P
Sbjct: 150 LASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDP 188
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas
maltophilia [TaxId: 40324]}
Length = 266
Score = 26.9 bits (58), Expect = 5.7
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 73 GCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVA--FGEFGLDY 114
G + + E Y +S + ++ G DY
Sbjct: 189 GYQLQGNPRYPHLIEDYRRSFATVRALPCDVLLTPHPGASNWDY 232
Score = 26.9 bits (58), Expect = 5.7
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 434 GCHPTRCSEFENDPEGYLQSLDKIIKEGGKKVVA--FGEFGLDY 475
G + + E Y +S + ++ G DY
Sbjct: 189 GYQLQGNPRYPHLIEDYRRSFATVRALPCDVLLTPHPGASNWDY 232
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.414
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,870,238
Number of extensions: 89140
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 25
Length of query: 487
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 398
Effective length of database: 1,185,626
Effective search space: 471879148
Effective search space used: 471879148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.5 bits)