BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4449
(2417 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 286 bits (733), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 168/476 (35%), Positives = 244/476 (51%), Gaps = 64/476 (13%)
Query: 1712 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFY 1771
K+VCYFTNWA YRQ ++LP D+D LCTH+IY FA + QL + D Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWN-----DETLY 56
Query: 1772 EKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLD 1829
++ LKK +K LAIGGWN K++ +V + R F+ + F+ +++FDGLD
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGT-QKFTDMVATANNRQTFVNSAIRFLRKYSFDGLD 115
Query: 1830 LDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF-------NPHDLLLSAAVSPSKAVI 1882
LDWEYP + PA DK+ F L+++L AF LLLSAAV + +
Sbjct: 116 LDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYV 170
Query: 1883 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDT--TPTFNANYSLHYWV 1940
D Y++ +++NLD++++M YD+HG W+K TGH +P+Y ++ + N + ++ W+
Sbjct: 171 DAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWL 230
Query: 1941 SHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQ 2000
G K+I GMP YG+SFTLA + + + G G T+ G LAYYE+C
Sbjct: 231 QKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCS--- 287
Query: 2001 KDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKN 2060
G R + +++ PY F+ +QWVGFDD K ++K LGGAM+WALDLDDF
Sbjct: 288 WKGATKQRIQDQKV-PYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAG 346
Query: 2061 F-CGCESYPLLKTINRVLR-----------NYPGPGPNCFLKPVPPKHEDNVPQTTGTQY 2108
F C YPL++T+ + L P PG +P P+H + Q T Q
Sbjct: 347 FSCNQGRYPLIQTLRQELSLPYLPSGTPELEVPKPG-----QPSEPEHGPSPGQDTFCQG 401
Query: 2109 EEDETLSDDTIVIDSKSNRCNRTGELYQHEGDCAKFASCENGLIKIYDCPPGLHFN 2164
+ D LY + + + F SC G + CP GL F+
Sbjct: 402 KAD---------------------GLYPNPRERSSFYSCAAGRLFQQSCPTGLVFS 436
Score = 191 bits (484), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 168/297 (56%), Gaps = 21/297 (7%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFY 443
K+VCY TNW+ R+ + +F+P+++D LCTH++YAFA + + LS N D+ Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWN-----DETLY 56
Query: 444 QRISSSPLVTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGL 503
Q + + + K+K L+AIGGW + +K++ ++++ +NR+ F+ S + FLR++ F GL
Sbjct: 57 QEFNGLKKM-NPKLKTLLAIGGWNFGT-QKFTDMVATANNRQTFVNSAIRFLRKYSFDGL 114
Query: 504 HFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFD-------KHDYSIAVGISGYKEI 556
DW YP DK F L+Q+L F K ++ + +
Sbjct: 115 DLDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTY 169
Query: 557 LEVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGE--PYPNYNINTALKLI 614
++ Y+ + +++F++LM+YD+HG+WE +TG SPL R E + N++ A++
Sbjct: 170 VDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQW 229
Query: 615 DELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEIC 671
+ G K+++G+P YG+S+TL + +GA G G G +T++ GMLAYYE+C
Sbjct: 230 LQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVC 286
Score = 179 bits (455), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 115/395 (29%), Positives = 195/395 (49%), Gaps = 34/395 (8%)
Query: 14 QVVCYVEAKSAYRHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALIPEDLEYDVIKGGY 73
++VCY + YR A F K++ P CTH+IYA+A + + L + + + Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETL---Y 56
Query: 74 KSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDL 127
+ F GLK+ NP+LK LA+ F + + +R F++S + Y FDGLDL
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDL 116
Query: 128 NVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSLVDI 187
+ + P E D + Q+ + T + L+ P + ++
Sbjct: 117 DWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEV 176
Query: 188 SVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGAR 247
+A +D + L +++ H E V + Q S A N+++AV W++KG
Sbjct: 177 DKIAQNLDFVNLMAYDF-HGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTP 235
Query: 248 PEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWR 307
++I+G+P +G+S+ L + S+ +GA G GT G +T+ G LA++EVC+ +K T +
Sbjct: 236 ASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCS-WKGATKQ 294
Query: 308 HFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGF-CGQ-K 365
D P++ + ++W+ +++ +S + K++Y+K + LGGAM+W LDLDDF GF C Q +
Sbjct: 295 RIQDQK-VPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGR 353
Query: 366 YPLLSAVVSNL------------------QPEEPE 382
YPL+ + L QP EPE
Sbjct: 354 YPLIQTLRQELSLPYLPSGTPELEVPKPGQPSEPE 388
Score = 161 bits (408), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 142/258 (55%), Gaps = 28/258 (10%)
Query: 1341 KIVCYFTNWAWYRPGKGKYVLKKV-PWINILKLYVTLQTGLGTDQEKENTFLKISELTYV 1399
K+VCYFTNWA YR G+ +++ K + P + +Y G+ Q +S +
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAF--AGMTNHQ--------LSTTEWN 51
Query: 1400 HILFYERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQ 1457
Y+ LKK +K LAIGGWN K++ +V +A RQ F+ ++FL KY
Sbjct: 52 DETLYQEFNGLKKMNPKLKTLLAIGGWNFGTQ-KFTDMVATANNRQTFVNSAIRFLRKYS 110
Query: 1458 FDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG-------LLLSAAVSP 1510
FDGLDLDWEYP P DKE F V++L AF+ LLLSAAV
Sbjct: 111 FDGLDLDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPA 165
Query: 1511 SKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDD--FFYFNANFT 1568
+ ++A Y+V ++++LD++++M YD+HG W+K TGH +PLY+ ++ N +
Sbjct: 166 GQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAA 225
Query: 1569 MNYWMKKGAPSRKLVMGV 1586
+ W++KG P+ KL++G+
Sbjct: 226 VQQWLQKGTPASKLILGM 243
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 84/143 (58%), Gaps = 4/143 (2%)
Query: 2191 KVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSHNNKLDLEQGFY 2250
K++CY+T+WA RQ E ++ P+D+D SLCTHL+YAFA + +L N++ ++ +
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDETLYQE--F 59
Query: 2251 EKITKFNERGIQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGLEFA 2310
+ K N + ++ +LAIGGW + + K++ +V R+ FV FL Y F+GL+
Sbjct: 60 NGLKKMNPK-LKTLLAIGGW-NFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLD 117
Query: 2311 WEYPKCWQTCSTVKSHEWTVVRD 2333
WEYP + + K T+V+D
Sbjct: 118 WEYPGSQGSPAVDKERFTTLVQD 140
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 73/151 (48%), Gaps = 10/151 (6%)
Query: 695 TLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQG 754
TL + +GA G G G +T++ GMLAYYE+C + T QR P+ F+
Sbjct: 251 TLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVC---SWKGATKQRIQDQKVPYIFRD 307
Query: 755 DQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLDDFHNKCCMES-FPLLRAVNRAFGRL 813
+QWV ++D S KV ++K G G M W +DLDDF C + +PL++ + R
Sbjct: 308 NQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTL-----RQ 362
Query: 814 KDKKPSAPDCTRPTVSTPSPIGTSTTEDSVS 844
+ P P T P + P P S E S
Sbjct: 363 ELSLPYLPSGT-PELEVPKPGQPSEPEHGPS 392
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 2340 PYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQNL-CSCGPYPLLSAVN 2398
PY + W+ +DD + K +KQ GLGGAMVW++DLDDF C+ G YPL+ +
Sbjct: 302 PYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLR 361
Query: 2399 YELRNTTLNYEP 2410
EL +L Y P
Sbjct: 362 QEL---SLPYLP 370
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 56/158 (35%), Gaps = 36/158 (22%)
Query: 870 QVKFIKSNGYAGIMAWTIDLDDFHNKCCMDKSRFRKIEGEKAKCTGLYQINSVNSFPNWN 929
+V ++K G G M W +DLDDF C ++ R+ I+ + + + Y + P
Sbjct: 322 KVSYLKQKGLGGAMVWALDLDDFAGFSC-NQGRYPLIQTLRQELSLPYLPSGT---PELE 377
Query: 930 IDN-RRFSKSRFRKIEGQKAKCTGLYQTNSVNSFPNWNIDNRRFSIXXXXXXXXXXXGEY 988
+ + S+ GQ C G
Sbjct: 378 VPKPGQPSEPEHGPSPGQDTFCQG-------------------------------KADGL 406
Query: 989 YPVDGECGSYYRCILGTLKKESCAPGLHWNKVNKICDW 1026
YP E S+Y C G L ++SC GL ++ K C W
Sbjct: 407 YPNPRERSSFYSCAAGRLFQQSCPTGLVFSNSCKCCTW 444
Score = 34.3 bits (77), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 1145 PDPDDCRSFLICSHGNLLKQSCGPSLLWNAKKKLCDWS 1182
P+P + SF C+ G L +QSC L+++ K C W+
Sbjct: 408 PNPRERSSFYSCAAGRLFQQSCPTGLVFSNSCKCCTWN 445
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 279 bits (713), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 147/378 (38%), Positives = 214/378 (56%), Gaps = 27/378 (7%)
Query: 1712 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFY 1771
K+VCYFTNWA YRQ ++LP D+D LCTH+IY FA + QL + D Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWN-----DETLY 56
Query: 1772 EKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLD 1829
++ LKK +K LAIGGWN K++ +V + R F+ + F+ +++FDGLD
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGT-QKFTDMVATANNRQTFVNSAIRFLRKYSFDGLD 115
Query: 1830 LDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN-------PHDLLLSAAVSPSKAVI 1882
LDWEYP + PA DK+ F L+++L AF LLLSAAV + +
Sbjct: 116 LDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYV 170
Query: 1883 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDT--TPTFNANYSLHYWV 1940
D Y++ +++NLD++++M YD+HG W+K TGH +P+Y ++ + N + ++ W+
Sbjct: 171 DAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWL 230
Query: 1941 SHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQ 2000
G K+I GMP YG+SFTLA + + + G G T+ G LAYYE+C
Sbjct: 231 QKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCS--- 287
Query: 2001 KDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKN 2060
G R + +++ PY F+ +QWVGFDD K ++K LGGAM+WALDLDDF
Sbjct: 288 WKGATKQRIQDQKV-PYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAG 346
Query: 2061 F-CGCESYPLLKTINRVL 2077
F C YPL++T+ + L
Sbjct: 347 FSCNQGRYPLIQTLRQEL 364
Score = 191 bits (484), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 168/297 (56%), Gaps = 21/297 (7%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFY 443
K+VCY TNW+ R+ + +F+P+++D LCTH++YAFA + + LS N D+ Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWN-----DETLY 56
Query: 444 QRISSSPLVTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGL 503
Q + + + K+K L+AIGGW + +K++ ++++ +NR+ F+ S + FLR++ F GL
Sbjct: 57 QEFNGLKKM-NPKLKTLLAIGGWNFGT-QKFTDMVATANNRQTFVNSAIRFLRKYSFDGL 114
Query: 504 HFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFD-------KHDYSIAVGISGYKEI 556
DW YP DK F L+Q+L F K ++ + +
Sbjct: 115 DLDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTY 169
Query: 557 LEVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGE--PYPNYNINTALKLI 614
++ Y+ + +++F++LM+YD+HG+WE +TG SPL R E + N++ A++
Sbjct: 170 VDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQW 229
Query: 615 DELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEIC 671
+ G K+++G+P YG+S+TL + +GA G G G +T++ GMLAYYE+C
Sbjct: 230 LQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVC 286
Score = 178 bits (451), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 190/371 (51%), Gaps = 16/371 (4%)
Query: 14 QVVCYVEAKSAYRHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALIPEDLEYDVIKGGY 73
++VCY + YR A F K++ P CTH+IYA+A + + L + + + Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETL---Y 56
Query: 74 KSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDL 127
+ F GLK+ NP+LK LA+ F + + +R F++S + Y FDGLDL
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDL 116
Query: 128 NVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSLVDI 187
+ + P E D + Q+ + T + L+ P + ++
Sbjct: 117 DWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEV 176
Query: 188 SVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGAR 247
+A +D + L +++ H E V + Q S A N+++AV W++KG
Sbjct: 177 DKIAQNLDFVNLMAYDF-HGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTP 235
Query: 248 PEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWR 307
++I+G+P +G+S+ L + S+ +GA G GT G +T+ G LA++EVC+ +K T +
Sbjct: 236 ASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCS-WKGATKQ 294
Query: 308 HFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGF-CGQ-K 365
D P++ + ++W+ +++ +S + K++Y+K + LGGAM+W LDLDDF GF C Q +
Sbjct: 295 RIQDQK-VPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGR 353
Query: 366 YPLLSAVVSNL 376
YPL+ + L
Sbjct: 354 YPLIQTLRQEL 364
Score = 161 bits (407), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 142/258 (55%), Gaps = 28/258 (10%)
Query: 1341 KIVCYFTNWAWYRPGKGKYVLKKV-PWINILKLYVTLQTGLGTDQEKENTFLKISELTYV 1399
K+VCYFTNWA YR G+ +++ K + P + +Y G+ Q +S +
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAF--AGMTNHQ--------LSTTEWN 51
Query: 1400 HILFYERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQ 1457
Y+ LKK +K LAIGGWN K++ +V +A RQ F+ ++FL KY
Sbjct: 52 DETLYQEFNGLKKMNPKLKTLLAIGGWNFGTQ-KFTDMVATANNRQTFVNSAIRFLRKYS 110
Query: 1458 FDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG-------LLLSAAVSP 1510
FDGLDLDWEYP P DKE F V++L AF+ LLLSAAV
Sbjct: 111 FDGLDLDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPA 165
Query: 1511 SKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDD--FFYFNANFT 1568
+ ++A Y+V ++++LD++++M YD+HG W+K TGH +PLY+ ++ N +
Sbjct: 166 GQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAA 225
Query: 1569 MNYWMKKGAPSRKLVMGV 1586
+ W++KG P+ KL++G+
Sbjct: 226 VQQWLQKGTPASKLILGM 243
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 84/143 (58%), Gaps = 4/143 (2%)
Query: 2191 KVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSHNNKLDLEQGFY 2250
K++CY+T+WA RQ E ++ P+D+D SLCTHL+YAFA + +L N++ ++ +
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDETLYQE--F 59
Query: 2251 EKITKFNERGIQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGLEFA 2310
+ K N + ++ +LAIGGW + + K++ +V R+ FV FL Y F+GL+
Sbjct: 60 NGLKKMNPK-LKTLLAIGGW-NFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLD 117
Query: 2311 WEYPKCWQTCSTVKSHEWTVVRD 2333
WEYP + + K T+V+D
Sbjct: 118 WEYPGSQGSPAVDKERFTTLVQD 140
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Query: 695 TLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQG 754
TL + +GA G G G +T++ GMLAYYE+C + T QR P+ F+
Sbjct: 251 TLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVC---SWKGATKQRIQDQKVPYIFRD 307
Query: 755 DQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLDDFHNKCCMES-FPLLRAVNR 808
+QWV ++D S KV ++K G G M W +DLDDF C + +PL++ + +
Sbjct: 308 NQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQ 362
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 2340 PYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQNL-CSCGPYPLLSAVN 2398
PY + W+ +DD + K +KQ GLGGAMVW++DLDDF C+ G YPL+ +
Sbjct: 302 PYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLR 361
Query: 2399 YEL 2401
EL
Sbjct: 362 QEL 364
Score = 34.7 bits (78), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 870 QVKFIKSNGYAGIMAWTIDLDDFHNKCCMDKSRFRKIE 907
+V ++K G G M W +DLDDF C ++ R+ I+
Sbjct: 322 KVSYLKQKGLGGAMVWALDLDDFAGFSC-NQGRYPLIQ 358
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 278 bits (712), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 147/378 (38%), Positives = 214/378 (56%), Gaps = 27/378 (7%)
Query: 1712 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFY 1771
K+VCYFTNWA YRQ ++LP D+D LCTH+IY FA + QL + D Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWN-----DETLY 56
Query: 1772 EKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLD 1829
++ LKK +K LAIGGWN K++ +V + R F+ + F+ +++FDGLD
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGT-QKFTDMVATANNRQTFVNSAIRFLRKYSFDGLD 115
Query: 1830 LDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN-------PHDLLLSAAVSPSKAVI 1882
LDWEYP + PA DK+ F L+++L AF LLLSAAV + +
Sbjct: 116 LDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYV 170
Query: 1883 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDT--TPTFNANYSLHYWV 1940
D Y++ +++NLD++++M YD+HG W+K TGH +P+Y ++ + N + ++ W+
Sbjct: 171 DAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWL 230
Query: 1941 SHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQ 2000
G K+I GMP YG+SFTLA + + + G G T+ G LAYYE+C
Sbjct: 231 EKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCS--- 287
Query: 2001 KDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKN 2060
G R + +++ PY F+ +QWVGFDD K ++K LGGAM+WALDLDDF
Sbjct: 288 WKGATKQRIQDQKV-PYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAG 346
Query: 2061 F-CGCESYPLLKTINRVL 2077
F C YPL++T+ + L
Sbjct: 347 FSCNQGRYPLIQTLRQEL 364
Score = 191 bits (486), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 168/297 (56%), Gaps = 21/297 (7%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFY 443
K+VCY TNW+ R+ + +F+P+++D LCTH++YAFA + + LS N D+ Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWN-----DETLY 56
Query: 444 QRISSSPLVTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGL 503
Q + + + K+K L+AIGGW + +K++ ++++ +NR+ F+ S + FLR++ F GL
Sbjct: 57 QEFNGLKKM-NPKLKTLLAIGGWNFGT-QKFTDMVATANNRQTFVNSAIRFLRKYSFDGL 114
Query: 504 HFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFD-------KHDYSIAVGISGYKEI 556
DW YP DK F L+Q+L F K ++ + +
Sbjct: 115 DLDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTY 169
Query: 557 LEVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGE--PYPNYNINTALKLI 614
++ Y+ + +++F++LM+YD+HG+WE +TG SPL R E + N++ A++
Sbjct: 170 VDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQW 229
Query: 615 DELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEIC 671
E G K+++G+P YG+S+TL + +GA G G G +T++ GMLAYYE+C
Sbjct: 230 LEKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVC 286
Score = 177 bits (449), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 190/371 (51%), Gaps = 16/371 (4%)
Query: 14 QVVCYVEAKSAYRHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALIPEDLEYDVIKGGY 73
++VCY + YR A F K++ P CTH+IYA+A + + L + + + Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETL---Y 56
Query: 74 KSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDL 127
+ F GLK+ NP+LK LA+ F + + +R F++S + Y FDGLDL
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDL 116
Query: 128 NVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSLVDI 187
+ + P E D + Q+ + T + L+ P + ++
Sbjct: 117 DWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEV 176
Query: 188 SVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGAR 247
+A +D + L +++ H E V + Q S A N+++AV W++KG
Sbjct: 177 DKIAQNLDFVNLMAYDF-HGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLEKGTP 235
Query: 248 PEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWR 307
++I+G+P +G+S+ L + S+ +GA G GT G +T+ G LA++EVC+ +K T +
Sbjct: 236 ASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCS-WKGATKQ 294
Query: 308 HFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGF-CGQ-K 365
D P++ + ++W+ +++ +S + K++Y+K + LGGAM+W LDLDDF GF C Q +
Sbjct: 295 RIQDQK-VPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGR 353
Query: 366 YPLLSAVVSNL 376
YPL+ + L
Sbjct: 354 YPLIQTLRQEL 364
Score = 160 bits (405), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 142/258 (55%), Gaps = 28/258 (10%)
Query: 1341 KIVCYFTNWAWYRPGKGKYVLKKV-PWINILKLYVTLQTGLGTDQEKENTFLKISELTYV 1399
K+VCYFTNWA YR G+ +++ K + P + +Y G+ Q +S +
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAF--AGMTNHQ--------LSTTEWN 51
Query: 1400 HILFYERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQ 1457
Y+ LKK +K LAIGGWN K++ +V +A RQ F+ ++FL KY
Sbjct: 52 DETLYQEFNGLKKMNPKLKTLLAIGGWNFGTQ-KFTDMVATANNRQTFVNSAIRFLRKYS 110
Query: 1458 FDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG-------LLLSAAVSP 1510
FDGLDLDWEYP P DKE F V++L AF+ LLLSAAV
Sbjct: 111 FDGLDLDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPA 165
Query: 1511 SKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDD--FFYFNANFT 1568
+ ++A Y+V ++++LD++++M YD+HG W+K TGH +PLY+ ++ N +
Sbjct: 166 GQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAA 225
Query: 1569 MNYWMKKGAPSRKLVMGV 1586
+ W++KG P+ KL++G+
Sbjct: 226 VQQWLEKGTPASKLILGM 243
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 84/143 (58%), Gaps = 4/143 (2%)
Query: 2191 KVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSHNNKLDLEQGFY 2250
K++CY+T+WA RQ E ++ P+D+D SLCTHL+YAFA + +L N++ ++ +
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDETLYQE--F 59
Query: 2251 EKITKFNERGIQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGLEFA 2310
+ K N + ++ +LAIGGW + + K++ +V R+ FV FL Y F+GL+
Sbjct: 60 NGLKKMNPK-LKTLLAIGGW-NFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLD 117
Query: 2311 WEYPKCWQTCSTVKSHEWTVVRD 2333
WEYP + + K T+V+D
Sbjct: 118 WEYPGSQGSPAVDKERFTTLVQD 140
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Query: 695 TLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQG 754
TL + +GA G G G +T++ GMLAYYE+C + T QR P+ F+
Sbjct: 251 TLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVC---SWKGATKQRIQDQKVPYIFRD 307
Query: 755 DQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLDDFHNKCCMES-FPLLRAVNR 808
+QWV ++D S KV ++K G G M W +DLDDF C + +PL++ + +
Sbjct: 308 NQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQ 362
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 2340 PYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQNL-CSCGPYPLLSAVN 2398
PY + W+ +DD + K +KQ GLGGAMVW++DLDDF C+ G YPL+ +
Sbjct: 302 PYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLR 361
Query: 2399 YEL 2401
EL
Sbjct: 362 QEL 364
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 870 QVKFIKSNGYAGIMAWTIDLDDFHNKCCMDKSRFRKIE 907
+V ++K G G M W +DLDDF C ++ R+ I+
Sbjct: 322 KVSYLKQKGLGGAMVWALDLDDFAGFSC-NQGRYPLIQ 358
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 278 bits (711), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 146/379 (38%), Positives = 220/379 (58%), Gaps = 25/379 (6%)
Query: 1711 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1770
+++ CYFTNWA YR G+++P DI+ LCTH+IY FA + +++ W D+
Sbjct: 1 YQLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITTI---EWNDV--TL 55
Query: 1771 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1828
Y+ LK K +K LAIGGWN ++ +V++ + R FI V+ F+ ++ FDGL
Sbjct: 56 YQAFNGLKNKNSQLKTLLAIGGWNFGTA-PFTAMVSTPENRQTFITSVIKFLRQYEFDGL 114
Query: 1829 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF-------NPHDLLLSAAVSPSKAV 1881
D DWEYP + P DK F L++E+R AF N L+++AAV+ +
Sbjct: 115 DFDWEYP-----GSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISN 169
Query: 1882 IDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPT--FNANYSLHYW 1939
I + Y+IP +S+ LD+I VMTYD HG W+ TG +P+Y P DT N +Y ++YW
Sbjct: 170 IQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYW 229
Query: 1940 VSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKI 1999
+GA +K+I G P YG +F L++ + G+ + T G AG + G AYYEIC +
Sbjct: 230 KDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFL 289
Query: 2000 QKDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFK 2059
K+G D + + PYA++G+ WVG+D+ KA+++K+N GGAM+WA+DLDDF
Sbjct: 290 -KNGATQGWDAPQEV-PYAYQGNVWVGYDNVKSFDIKAQWLKHNKFGGAMVWAIDLDDFT 347
Query: 2060 N-FCGCESYPLLKTINRVL 2077
FC +PL+ T+ + L
Sbjct: 348 GTFCNQGKFPLISTLKKAL 366
Score = 199 bits (507), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 135/467 (28%), Positives = 213/467 (45%), Gaps = 98/467 (20%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFY 443
++ CY TNW+ R G+F+P++I+ LCTH++YAFA + N ++ N D Y
Sbjct: 2 QLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITTIEWN-----DVTLY 56
Query: 444 QRISSSPLVTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGL 503
Q + + ++K L+AIGGW + ++ ++S+ NR+ FI SV+ FLR+++F GL
Sbjct: 57 QAFNGLK-NKNSQLKTLLAIGGWNFGTA-PFTAMVSTPENRQTFITSVIKFLRQYEFDGL 114
Query: 504 HFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKH-----------DYSIAVGISG 552
FDW YP DK F L+QE++ F++ ++A GIS
Sbjct: 115 DFDWEYP-----GSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISN 169
Query: 553 YKEILEVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPN--YNINTA 610
++ Y+ P L+ +++++ +M+YD HG+WEG TG SPL P + N N++
Sbjct: 170 ----IQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYV 225
Query: 611 LKLIDELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEI 670
+ + G K+++G P YG ++ L G+GA T G G AG Y ++ G+ AYYEI
Sbjct: 226 MNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEI 285
Query: 671 CYRIK---TRKWTVQRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYY 727
C +K T+ W D P
Sbjct: 286 CTFLKNGATQGW-----------------------------DAP---------------Q 301
Query: 728 EICYRIKTRKWTVQRNTKSLEPFTFQGDQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTID 787
E+ Y + W N KS + K +++K N + G M W ID
Sbjct: 302 EVPYAYQGNVWVGYDNVKSFD-------------------IKAQWLKHNKFGGAMVWAID 342
Query: 788 LDDFHNKCCMES-FPLLRAVNRAFGRLKDKKPSAP-DCTRPTVSTPS 832
LDDF C + FPL+ + +A G L+ +AP P + P
Sbjct: 343 LDDFTGTFCNQGKFPLISTLKKALG-LQSASCTAPAQPIEPITAAPG 388
Score = 167 bits (424), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 143/258 (55%), Gaps = 28/258 (10%)
Query: 1340 FKIVCYFTNWAWYRPGKGKYVLKKV-PWINILKLYVTLQTGLGTDQEKENTFLKISELTY 1398
+++ CYFTNWA YRPG G+++ + P + +Y Q E T ++ +++T
Sbjct: 1 YQLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYA-----FAGMQNNEITTIEWNDVT- 54
Query: 1399 VHILFYERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY 1456
Y+ LK K +K LAIGGWN ++ +V++ RQ FI V+KFL +Y
Sbjct: 55 ----LYQAFNGLKNKNSQLKTLLAIGGWNFGTA-PFTAMVSTPENRQTFITSVIKFLRQY 109
Query: 1457 QFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG-------LLLSAAVS 1509
+FDGLD DWEYP P DK F + V+E+ +AF+ L+++AAV+
Sbjct: 110 EFDGLDFDWEYP-----GSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVA 164
Query: 1510 PSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDD--DFFYFNANF 1567
I + Y++ LS+ LD+I VMTYD HG W+ TG +PLY++P D Y N ++
Sbjct: 165 AGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDY 224
Query: 1568 TMNYWMKKGAPSRKLVMG 1585
MNYW GAP+ KL++G
Sbjct: 225 VMNYWKDNGAPAEKLIVG 242
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 178/380 (46%), Gaps = 30/380 (7%)
Query: 13 HQVVCYVEAKSAYRHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 72
+Q+ CY + YR F ++ P CTH+IYA+A + I + DV
Sbjct: 1 YQLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITTIEWN---DVTL-- 55
Query: 73 YKSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLD 126
Y++F GLK N +LK LA+ + F ++ S E+R FI+SV++ Y+FDGLD
Sbjct: 56 YQAFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLD 115
Query: 127 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQL-------TLTSPGVID 179
+ + P S ++ F+ +QE+ + Q+ T I
Sbjct: 116 FDWEYPG-------SRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGIS 168
Query: 180 RKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIAN-FNNIESAV 238
S +I ++ +D I + ++ D N+ + T T +N + N++ +
Sbjct: 169 NIQSGYEIPQLSQYLDYIHVMTY--DLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVM 226
Query: 239 YNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVC 298
W GA E++I+G P +G ++ L N S G+GA G G G Y + G A++E+C
Sbjct: 227 NYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEIC 286
Query: 299 NKFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDF 358
K+ + + P+ + + W+ Y+N S K ++K GGAM+W +DLDDF
Sbjct: 287 TFLKNGATQGWDAPQEVPYAYQGNVWVGYDNVKSFDIKAQWLKHNKFGGAMVWAIDLDDF 346
Query: 359 RG-FCGQ-KYPLLSAVVSNL 376
G FC Q K+PL+S + L
Sbjct: 347 TGTFCNQGKFPLISTLKKAL 366
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Query: 2190 YKVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSHNNKLDLEQGF 2249
Y++ CY+T+WA R G++ P+DI+ LCTHL+YAFA + E+ N+ + L Q F
Sbjct: 1 YQLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITTIEWND-VTLYQAF 59
Query: 2250 YEKITKFNERGIQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGLEF 2309
K ++ ++ +LAIGGW+ + ++ +V+ R+ F+ V +FL Y F+GL+F
Sbjct: 60 NGLKNKNSQ--LKTLLAIGGWNFGTA-PFTAMVSTPENRQTFITSVIKFLRQYEFDGLDF 116
Query: 2310 AWEYP 2314
WEYP
Sbjct: 117 DWEYP 121
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 2340 PYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQN-LCSCGPYPLLSAVN 2398
PYAY G +W+ YD+ + K + +K + GGAMVW+IDLDDF C+ G +PL+S +
Sbjct: 304 PYAYQGNVWVGYDNVKSFDIKAQWLKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTLK 363
Query: 2399 YEL 2401
L
Sbjct: 364 KAL 366
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 863 NASTSILQVKFIKSNGYAGIMAWTIDLDDFHNKCCMDKSRFRKIEGEKAKCTGL 916
N + ++ +++K N + G M W IDLDDF C ++ +F I K K GL
Sbjct: 317 NVKSFDIKAQWLKHNKFGGAMVWAIDLDDFTGTFC-NQGKFPLISTLK-KALGL 368
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 278 bits (711), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 147/378 (38%), Positives = 213/378 (56%), Gaps = 27/378 (7%)
Query: 1712 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFY 1771
K+VCYFTNWA YRQ ++LP D+D LCTH+IY FA + QL + D Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWN-----DETLY 56
Query: 1772 EKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLD 1829
++ LKK +K LAIGGWN K++ +V + R F+ + F+ +++FDGLD
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGT-QKFTDMVATANNRQTFVNSAIRFLRKYSFDGLD 115
Query: 1830 LDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN-------PHDLLLSAAVSPSKAVI 1882
LDWEYP + PA DK+ F L+++L AF LLLSAAV + +
Sbjct: 116 LDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYV 170
Query: 1883 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDT--TPTFNANYSLHYWV 1940
D Y++ +++NLD++++M YD+HG W+K TGH +P+Y + + N + ++ W+
Sbjct: 171 DAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWL 230
Query: 1941 SHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQ 2000
G K+I GMP YG+SFTLA + + + G G T+ G LAYYE+C
Sbjct: 231 QKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCS--- 287
Query: 2001 KDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKN 2060
G R + +++ PY F+ +QWVGFDD K ++K LGGAM+WALDLDDF
Sbjct: 288 WKGATKQRIQDQKV-PYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAG 346
Query: 2061 F-CGCESYPLLKTINRVL 2077
F C YPL++T+ + L
Sbjct: 347 FSCNQGRYPLIQTLRQEL 364
Score = 189 bits (481), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 168/297 (56%), Gaps = 21/297 (7%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFY 443
K+VCY TNW+ R+ + +F+P+++D LCTH++YAFA + + LS N D+ Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWN-----DETLY 56
Query: 444 QRISSSPLVTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGL 503
Q + + + K+K L+AIGGW + +K++ ++++ +NR+ F+ S + FLR++ F GL
Sbjct: 57 QEFNGLKKM-NPKLKTLLAIGGWNFGT-QKFTDMVATANNRQTFVNSAIRFLRKYSFDGL 114
Query: 504 HFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFD-------KHDYSIAVGISGYKEI 556
DW YP DK F L+Q+L F K ++ + +
Sbjct: 115 DLDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTY 169
Query: 557 LEVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGE--PYPNYNINTALKLI 614
++ Y+ + +++F++LM+YD+HG+WE +TG SPL R + + N++ A++
Sbjct: 170 VDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQW 229
Query: 615 DELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEIC 671
+ G K+++G+P YG+S+TL + +GA G G G +T++ GMLAYYE+C
Sbjct: 230 LQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVC 286
Score = 178 bits (451), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 190/371 (51%), Gaps = 16/371 (4%)
Query: 14 QVVCYVEAKSAYRHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALIPEDLEYDVIKGGY 73
++VCY + YR A F K++ P CTH+IYA+A + + L + + + Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETL---Y 56
Query: 74 KSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDL 127
+ F GLK+ NP+LK LA+ F + + +R F++S + Y FDGLDL
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDL 116
Query: 128 NVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSLVDI 187
+ + P E D + Q+ + T + L+ P + ++
Sbjct: 117 DWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEV 176
Query: 188 SVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGAR 247
+A +D + L +++ H E V + Q S A N+++AV W++KG
Sbjct: 177 DKIAQNLDFVNLMAYDF-HGSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTP 235
Query: 248 PEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWR 307
++I+G+P +G+S+ L + S+ +GA G GT G +T+ G LA++EVC+ +K T +
Sbjct: 236 ASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCS-WKGATKQ 294
Query: 308 HFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGF-CGQ-K 365
D P++ + ++W+ +++ +S + K++Y+K + LGGAM+W LDLDDF GF C Q +
Sbjct: 295 RIQDQK-VPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGR 353
Query: 366 YPLLSAVVSNL 376
YPL+ + L
Sbjct: 354 YPLIQTLRQEL 364
Score = 160 bits (405), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 141/258 (54%), Gaps = 28/258 (10%)
Query: 1341 KIVCYFTNWAWYRPGKGKYVLKKV-PWINILKLYVTLQTGLGTDQEKENTFLKISELTYV 1399
K+VCYFTNWA YR G+ +++ K + P + +Y G+ Q +S +
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAF--AGMTNHQ--------LSTTEWN 51
Query: 1400 HILFYERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQ 1457
Y+ LKK +K LAIGGWN K++ +V +A RQ F+ ++FL KY
Sbjct: 52 DETLYQEFNGLKKMNPKLKTLLAIGGWNFGTQ-KFTDMVATANNRQTFVNSAIRFLRKYS 110
Query: 1458 FDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG-------LLLSAAVSP 1510
FDGLDLDWEYP P DKE F V++L AF+ LLLSAAV
Sbjct: 111 FDGLDLDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPA 165
Query: 1511 SKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDD--FFYFNANFT 1568
+ ++A Y+V ++++LD++++M YD+HG W+K TGH +PLY+ + N +
Sbjct: 166 GQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEQSGAAASLNVDAA 225
Query: 1569 MNYWMKKGAPSRKLVMGV 1586
+ W++KG P+ KL++G+
Sbjct: 226 VQQWLQKGTPASKLILGM 243
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 84/143 (58%), Gaps = 4/143 (2%)
Query: 2191 KVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSHNNKLDLEQGFY 2250
K++CY+T+WA RQ E ++ P+D+D SLCTHL+YAFA + +L N++ ++ +
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDETLYQE--F 59
Query: 2251 EKITKFNERGIQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGLEFA 2310
+ K N + ++ +LAIGGW + + K++ +V R+ FV FL Y F+GL+
Sbjct: 60 NGLKKMNPK-LKTLLAIGGW-NFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLD 117
Query: 2311 WEYPKCWQTCSTVKSHEWTVVRD 2333
WEYP + + K T+V+D
Sbjct: 118 WEYPGSQGSPAVDKERFTTLVQD 140
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Query: 695 TLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQG 754
TL + +GA G G G +T++ GMLAYYE+C + T QR P+ F+
Sbjct: 251 TLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVC---SWKGATKQRIQDQKVPYIFRD 307
Query: 755 DQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLDDFHNKCCMES-FPLLRAVNR 808
+QWV ++D S KV ++K G G M W +DLDDF C + +PL++ + +
Sbjct: 308 NQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQ 362
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 2340 PYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQNL-CSCGPYPLLSAVN 2398
PY + W+ +DD + K +KQ GLGGAMVW++DLDDF C+ G YPL+ +
Sbjct: 302 PYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLR 361
Query: 2399 YEL 2401
EL
Sbjct: 362 QEL 364
Score = 34.7 bits (78), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 870 QVKFIKSNGYAGIMAWTIDLDDFHNKCCMDKSRFRKIE 907
+V ++K G G M W +DLDDF C ++ R+ I+
Sbjct: 322 KVSYLKQKGLGGAMVWALDLDDFAGFSC-NQGRYPLIQ 358
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin F
Length = 381
Score = 278 bits (710), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 146/381 (38%), Positives = 221/381 (58%), Gaps = 25/381 (6%)
Query: 1709 DEFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDN 1768
+ +++ CYFTNWA YR G+++P DI+ LCTH+IY FA + +++ W D+
Sbjct: 3 EAYQLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITTI---EWNDV-- 57
Query: 1769 KFYEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFD 1826
Y+ LK K +K LAIGGWN ++ +V++ + R FI V+ F+ ++ FD
Sbjct: 58 TLYQAFNGLKNKNSQLKTLLAIGGWNFGTA-PFTAMVSTPENRQTFITSVIKFLRQYEFD 116
Query: 1827 GLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF-------NPHDLLLSAAVSPSK 1879
GLD DWEYP + P DK F L++E+R AF N L+++AAV+
Sbjct: 117 GLDFDWEYP-----GSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGI 171
Query: 1880 AVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPT--FNANYSLH 1937
+ I + Y+IP +S+ LD+I VMTYD HG W+ TG +P+Y P DT N +Y ++
Sbjct: 172 SNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVMN 231
Query: 1938 YWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICD 1997
YW +GA +K+I G P YG +F L++ + G+ + T G AG + G AYYEIC
Sbjct: 232 YWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICT 291
Query: 1998 KIQKDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDD 2057
+ K+G D + + PYA++G+ WVG+D+ KA+++K+N GGAM+WA+DLDD
Sbjct: 292 FL-KNGATQGWDAPQEV-PYAYQGNVWVGYDNIKSFDIKAQWLKHNKFGGAMVWAIDLDD 349
Query: 2058 FKN-FCGCESYPLLKTINRVL 2077
F FC +PL+ T+ + L
Sbjct: 350 FTGTFCNQGKFPLISTLKKAL 370
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 133/455 (29%), Positives = 210/455 (46%), Gaps = 97/455 (21%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFY 443
++ CY TNW+ R G+F+P++I+ LCTH++YAFA + N ++ N D Y
Sbjct: 6 QLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITTIEWN-----DVTLY 60
Query: 444 QRISSSPLVTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGL 503
Q + + ++K L+AIGGW + ++ ++S+ NR+ FI SV+ FLR+++F GL
Sbjct: 61 QAFNGLK-NKNSQLKTLLAIGGWNFGTA-PFTAMVSTPENRQTFITSVIKFLRQYEFDGL 118
Query: 504 HFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKH-----------DYSIAVGISG 552
FDW YP DK F L+QE++ F++ ++A GIS
Sbjct: 119 DFDWEYP-----GSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISN 173
Query: 553 YKEILEVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPN--YNINTA 610
++ Y+ P L+ +++++ +M+YD HG+WEG TG SPL P + N N++
Sbjct: 174 ----IQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYV 229
Query: 611 LKLIDELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEI 670
+ + G K+++G P YG ++ L G+GA T G G AG Y ++ G+ AYYEI
Sbjct: 230 MNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEI 289
Query: 671 CYRIK---TRKWTVQRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYY 727
C +K T+ W D P
Sbjct: 290 CTFLKNGATQGW-----------------------------DAP---------------Q 305
Query: 728 EICYRIKTRKWTVQRNTKSLEPFTFQGDQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTID 787
E+ Y + W N KS + K +++K N + G M W ID
Sbjct: 306 EVPYAYQGNVWVGYDNIKSFD-------------------IKAQWLKHNKFGGAMVWAID 346
Query: 788 LDDFHNKCCMES-FPLLRAVNRAFGRLKDKKPSAP 821
LDDF C + FPL+ + +A G L+ +AP
Sbjct: 347 LDDFTGTFCNQGKFPLISTLKKALG-LQSASCTAP 380
Score = 167 bits (423), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 143/258 (55%), Gaps = 28/258 (10%)
Query: 1340 FKIVCYFTNWAWYRPGKGKYVLKKV-PWINILKLYVTLQTGLGTDQEKENTFLKISELTY 1398
+++ CYFTNWA YRPG G+++ + P + +Y Q E T ++ +++T
Sbjct: 5 YQLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYA-----FAGMQNNEITTIEWNDVT- 58
Query: 1399 VHILFYERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY 1456
Y+ LK K +K LAIGGWN ++ +V++ RQ FI V+KFL +Y
Sbjct: 59 ----LYQAFNGLKNKNSQLKTLLAIGGWNFGTA-PFTAMVSTPENRQTFITSVIKFLRQY 113
Query: 1457 QFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG-------LLLSAAVS 1509
+FDGLD DWEYP P DK F + V+E+ +AF+ L+++AAV+
Sbjct: 114 EFDGLDFDWEYP-----GSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVA 168
Query: 1510 PSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDD--DFFYFNANF 1567
I + Y++ LS+ LD+I VMTYD HG W+ TG +PLY++P D Y N ++
Sbjct: 169 AGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDY 228
Query: 1568 TMNYWMKKGAPSRKLVMG 1585
MNYW GAP+ KL++G
Sbjct: 229 VMNYWKDNGAPAEKLIVG 246
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 108/384 (28%), Positives = 180/384 (46%), Gaps = 30/384 (7%)
Query: 9 QSTKHQVVCYVEAKSAYRHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALIPEDLEYDV 68
++ +Q+ CY + YR F ++ P CTH+IYA+A + I + DV
Sbjct: 1 EAEAYQLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITTIEWN---DV 57
Query: 69 IKGGYKSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKF 122
Y++F GLK N +LK LA+ + F ++ S E+R FI+SV++ Y+F
Sbjct: 58 TL--YQAFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEF 115
Query: 123 DGLDLNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQL-------TLTSP 175
DGLD + + P S ++ F+ +QE+ + Q+ T
Sbjct: 116 DGLDFDWEYPG-------SRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVA 168
Query: 176 GVIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIAN-FNNI 234
I S +I ++ +D I + ++ D N+ + T T +N + N+
Sbjct: 169 AGISNIQSGYEIPQLSQYLDYIHVMTY--DLHGSWEGYTGENSPLYKYPTDTGSNAYLNV 226
Query: 235 ESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAF 294
+ + W GA E++I+G P +G ++ L N S G+GA G G G Y + G A+
Sbjct: 227 DYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAY 286
Query: 295 FEVCNKFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLD 354
+E+C K+ + + P+ + + W+ Y+N S K ++K GGAM+W +D
Sbjct: 287 YEICTFLKNGATQGWDAPQEVPYAYQGNVWVGYDNIKSFDIKAQWLKHNKFGGAMVWAID 346
Query: 355 LDDFRG-FCGQ-KYPLLSAVVSNL 376
LDDF G FC Q K+PL+S + L
Sbjct: 347 LDDFTGTFCNQGKFPLISTLKKAL 370
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 78/128 (60%), Gaps = 4/128 (3%)
Query: 2187 AEPYKVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSHNNKLDLE 2246
AE Y++ CY+T+WA R G++ P+DI+ LCTHL+YAFA + E+ N+ + L
Sbjct: 2 AEAYQLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITTIEWND-VTLY 60
Query: 2247 QGFYEKITKFNERGIQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNG 2306
Q F K ++ ++ +LAIGGW+ + ++ +V+ R+ F+ V +FL Y F+G
Sbjct: 61 QAFNGLKNKNSQ--LKTLLAIGGWNFGTA-PFTAMVSTPENRQTFITSVIKFLRQYEFDG 117
Query: 2307 LEFAWEYP 2314
L+F WEYP
Sbjct: 118 LDFDWEYP 125
Score = 64.3 bits (155), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 2340 PYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQN-LCSCGPYPLLSAVN 2398
PYAY G +W+ YD+ + K + +K + GGAMVW+IDLDDF C+ G +PL+S +
Sbjct: 308 PYAYQGNVWVGYDNIKSFDIKAQWLKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTLK 367
Query: 2399 YEL 2401
L
Sbjct: 368 KAL 370
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 869 LQVKFIKSNGYAGIMAWTIDLDDFHNKCCMDKSRFRKIEGEKAKCTGL 916
++ +++K N + G M W IDLDDF C ++ +F I K K GL
Sbjct: 327 IKAQWLKHNKFGGAMVWAIDLDDFTGTFC-NQGKFPLISTLK-KALGL 372
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 278 bits (710), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 147/378 (38%), Positives = 213/378 (56%), Gaps = 27/378 (7%)
Query: 1712 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFY 1771
K+VCYFTNWA YRQ ++LP D+D LCTH+IY FA + QL + D Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWN-----DETLY 56
Query: 1772 EKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLD 1829
++ LKK +K LAIGGWN K++ +V + R F+ + F+ +++FDGLD
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGT-QKFTDMVATANNRQTFVNSAIRFLRKYSFDGLD 115
Query: 1830 LDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN-------PHDLLLSAAVSPSKAVI 1882
LDWEYP + PA DK+ F L+++L AF LLLSAAV + +
Sbjct: 116 LDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYV 170
Query: 1883 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDT--TPTFNANYSLHYWV 1940
D Y++ +++NLD++++M YD+HG W+K TGH +P+Y + + N + ++ W+
Sbjct: 171 DAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWL 230
Query: 1941 SHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQ 2000
G K+I GMP YG+SFTLA + + + G G T+ G LAYYE+C
Sbjct: 231 QKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCS--- 287
Query: 2001 KDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKN 2060
G R + +++ PY F+ +QWVGFDD K ++K LGGAM+WALDLDDF
Sbjct: 288 WKGATKQRIQDQKV-PYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAG 346
Query: 2061 F-CGCESYPLLKTINRVL 2077
F C YPL++T+ + L
Sbjct: 347 FSCNQGRYPLIQTLRQEL 364
Score = 189 bits (480), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 168/297 (56%), Gaps = 21/297 (7%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFY 443
K+VCY TNW+ R+ + +F+P+++D LCTH++YAFA + + LS N D+ Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWN-----DETLY 56
Query: 444 QRISSSPLVTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGL 503
Q + + + K+K L+AIGGW + +K++ ++++ +NR+ F+ S + FLR++ F GL
Sbjct: 57 QEFNGLKKM-NPKLKTLLAIGGWNFGT-QKFTDMVATANNRQTFVNSAIRFLRKYSFDGL 114
Query: 504 HFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFD-------KHDYSIAVGISGYKEI 556
DW YP DK F L+Q+L F K ++ + +
Sbjct: 115 DLDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTY 169
Query: 557 LEVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGE--PYPNYNINTALKLI 614
++ Y+ + +++F++LM+YD+HG+WE +TG SPL R + + N++ A++
Sbjct: 170 VDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQW 229
Query: 615 DELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEIC 671
+ G K+++G+P YG+S+TL + +GA G G G +T++ GMLAYYE+C
Sbjct: 230 LQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVC 286
Score = 177 bits (450), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 190/371 (51%), Gaps = 16/371 (4%)
Query: 14 QVVCYVEAKSAYRHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALIPEDLEYDVIKGGY 73
++VCY + YR A F K++ P CTH+IYA+A + + L + + + Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETL---Y 56
Query: 74 KSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDL 127
+ F GLK+ NP+LK LA+ F + + +R F++S + Y FDGLDL
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDL 116
Query: 128 NVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSLVDI 187
+ + P E D + Q+ + T + L+ P + ++
Sbjct: 117 DWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEV 176
Query: 188 SVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGAR 247
+A +D + L +++ H E V + Q S A N+++AV W++KG
Sbjct: 177 DKIAQNLDFVNLMAYDF-HGSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTP 235
Query: 248 PEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWR 307
++I+G+P +G+S+ L + S+ +GA G GT G +T+ G LA++EVC+ +K T +
Sbjct: 236 ASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCS-WKGATKQ 294
Query: 308 HFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGF-CGQ-K 365
D P++ + ++W+ +++ +S + K++Y+K + LGGAM+W LDLDDF GF C Q +
Sbjct: 295 RIQDQK-VPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGR 353
Query: 366 YPLLSAVVSNL 376
YPL+ + L
Sbjct: 354 YPLIQTLRQEL 364
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 141/258 (54%), Gaps = 28/258 (10%)
Query: 1341 KIVCYFTNWAWYRPGKGKYVLKKV-PWINILKLYVTLQTGLGTDQEKENTFLKISELTYV 1399
K+VCYFTNWA YR G+ +++ K + P + +Y G+ Q +S +
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAF--AGMTNHQ--------LSTTEWN 51
Query: 1400 HILFYERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQ 1457
Y+ LKK +K LAIGGWN K++ +V +A RQ F+ ++FL KY
Sbjct: 52 DETLYQEFNGLKKMNPKLKTLLAIGGWNFGTQ-KFTDMVATANNRQTFVNSAIRFLRKYS 110
Query: 1458 FDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG-------LLLSAAVSP 1510
FDGLDLDWEYP P DKE F V++L AF+ LLLSAAV
Sbjct: 111 FDGLDLDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPA 165
Query: 1511 SKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDD--FFYFNANFT 1568
+ ++A Y+V ++++LD++++M YD+HG W+K TGH +PLY+ + N +
Sbjct: 166 GQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEQSGAAASLNVDAA 225
Query: 1569 MNYWMKKGAPSRKLVMGV 1586
+ W++KG P+ KL++G+
Sbjct: 226 VQQWLQKGTPASKLILGM 243
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 84/143 (58%), Gaps = 4/143 (2%)
Query: 2191 KVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSHNNKLDLEQGFY 2250
K++CY+T+WA RQ E ++ P+D+D SLCTHL+YAFA + +L N++ ++ +
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDETLYQE--F 59
Query: 2251 EKITKFNERGIQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGLEFA 2310
+ K N + ++ +LAIGGW + + K++ +V R+ FV FL Y F+GL+
Sbjct: 60 NGLKKMNPK-LKTLLAIGGW-NFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLD 117
Query: 2311 WEYPKCWQTCSTVKSHEWTVVRD 2333
WEYP + + K T+V+D
Sbjct: 118 WEYPGSQGSPAVDKERFTTLVQD 140
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Query: 695 TLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQG 754
TL + +GA G G G +T++ GMLAYYE+C + T QR P+ F+
Sbjct: 251 TLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVC---SWKGATKQRIQDQKVPYIFRD 307
Query: 755 DQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLDDFHNKCCMES-FPLLRAVNR 808
+QWV ++D S KV ++K G G M W +DLDDF C + +PL++ + +
Sbjct: 308 NQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQ 362
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 2340 PYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQNL-CSCGPYPLLSAVN 2398
PY + W+ +DD + K +KQ GLGGAMVW++DLDDF C+ G YPL+ +
Sbjct: 302 PYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLR 361
Query: 2399 YEL 2401
EL
Sbjct: 362 QEL 364
Score = 34.3 bits (77), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 870 QVKFIKSNGYAGIMAWTIDLDDFHNKCCMDKSRFRKIE 907
+V ++K G G M W +DLDDF C ++ R+ I+
Sbjct: 322 KVSYLKQKGLGGAMVWALDLDDFAGFSC-NQGRYPLIQ 358
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling Protein
From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein Liganded
With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 275 bits (703), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 152/378 (40%), Positives = 221/378 (58%), Gaps = 31/378 (8%)
Query: 1711 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1770
+K++CY+T+W+ YR+ G P ID LCTHVIY FA + +++ DTW D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 1771 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1828
Y+ + LK + +K L++GGWN ++S++ + Q+R FI V F+ H FDGL
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWN-FGPQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 1829 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF------NPHDLLLSAAVSPSKAVI 1882
DL W YP DK+ L+KE++A F LLLSAAVS K I
Sbjct: 115 DLAWLYPG----------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAI 164
Query: 1883 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTF-NANYSLHYWVS 1941
D YDI +S +LD+IS++TYD+HG W + GH +P++ D + F NA+Y++ Y +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGQEDASSRFSNADYAVSYMLR 224
Query: 1942 HGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQK 2001
GA K++ G+P +G+SFTLA +K + + G G+ T+ +G LAYYEICD +Q
Sbjct: 225 LGAPANKLVMGIPTFGKSFTLA-SSKTDVGAPVSGPGIPGQFTKEKGILAYYEICDFLQ- 282
Query: 2002 DGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFK-N 2060
G R R +++ PYA KG+QWV +DDQ + +KA ++K L GAM+WALDLDDF+
Sbjct: 283 -GATTHRFRDQQV-PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGT 340
Query: 2061 FCGCE-SYPLLKTINRVL 2077
FCG ++PL + VL
Sbjct: 341 FCGQNLTFPLTSAVKDVL 358
Score = 187 bits (474), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 125/438 (28%), Positives = 207/438 (47%), Gaps = 88/438 (20%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFY 443
K++CY T+WS R+ DG P+ ID LCTH++Y+FA++ N + N + + D
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWN-DVTLYDTLN 60
Query: 444 QRISSSPLVTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGL 503
+ +P +K L+++GGW + +++S++ S +R+ FIKSV FLR F GL
Sbjct: 61 TLKNRNP-----NLKTLLSVGGW-NFGPQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 504 HFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKHDYS------IAVGISGYKEIL 557
W YP + DK + L++E+KAEF + + ++ +S K +
Sbjct: 115 DLAWLYP----------GRRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAI 164
Query: 558 EVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPNY-NINTALKLIDE 616
+ YD ++ H++F+SL++YD+HGAW G SPL + + N + A+ +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGQEDASSRFSNADYAVSYMLR 224
Query: 617 LGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKT 676
LG K+V+G+P +G+S+TL K +GA GPG+ G++T++ G+LAYYEIC ++
Sbjct: 225 LGAPANKLVMGIPTFGKSFTLASSKTD-VGAPVSGPGIPGQFTKEKGILAYYEICDFLQ- 282
Query: 677 RKWTVQRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTR 736
GA T + Q ++ Y K
Sbjct: 283 ----------------------------GATTH------RFRDQ-------QVPYATKGN 301
Query: 737 KWTVQRNTKSLEPFTFQGDQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLDDFHNKCC 796
+W + +S++ K +++K+ AG M W +DLDDF C
Sbjct: 302 QWVAYDDQESVK-------------------NKARYLKNRQLAGAMVWALDLDDFRGTFC 342
Query: 797 ME--SFPLLRAVNRAFGR 812
+ +FPL AV R
Sbjct: 343 GQNLTFPLTSAVKDVLAR 360
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 185/375 (49%), Gaps = 36/375 (9%)
Query: 13 HQVVCYVEAKSAYRHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 72
++++CY + S YR + + P CTHVIY++A I S I DV
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI---SNNEIDTWEWNDVTL-- 55
Query: 73 YKSFLGLKEANPELKVYLAVKS------NFVSITSDRESRLNFISSVLEMFDMYKFDGLD 126
Y + LK NP LK L+V F I S +SR FI SV + FDGLD
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWNFGPQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 127 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLT---LTSPGVIDRKTS 183
L P ++ +T ++E+ + R T L S V K +
Sbjct: 116 LAWLYPG------------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIA 163
Query: 184 L---VDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYN 240
+ DI+ ++ +D I L ++ D V ++ + + F+N + AV
Sbjct: 164 IDRGYDIAQISRHLDFISLLTY--DFHGAWRQTVGHHSPLFRGQEDASSRFSNADYAVSY 221
Query: 241 WIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNK 300
++ GA ++++GIP FGKS+ L + S+ +GA V GPG G++T+ G LA++E+C+
Sbjct: 222 MLRLGAPANKLVMGIPTFGKSFTLAS-SKTDVGAPVSGPGIPGQFTKEKGILAYYEICDF 280
Query: 301 FKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRG 360
+ T F D P+ K ++W+ Y++ +S++ K Y+K+R L GAM+W LDLDDFRG
Sbjct: 281 LQGATTHRFRDQQ-VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRG 339
Query: 361 -FCGQK--YPLLSAV 372
FCGQ +PL SAV
Sbjct: 340 TFCGQNLTFPLTSAV 354
Score = 134 bits (336), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 132/257 (51%), Gaps = 31/257 (12%)
Query: 1340 FKIVCYFTNWAWYRPGKGKYVLKKV-PWINILKLYVTLQTGLGTDQEKENTFLKISELTY 1398
+K++CY+T+W+ YR G G + P++ +Y E I +
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIY-----SFANISNNE-----IDTWEW 50
Query: 1399 VHILFYERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY 1456
+ Y+ + TLK + +K L++GGWN ++S++ + +R+ FI+ V FL +
Sbjct: 51 NDVTLYDTLNTLKNRNPNLKTLLSVGGWNFG-PQRFSKIASKTQSRRTFIKSVPPFLRTH 109
Query: 1457 QFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG------LLLSAAVSP 1510
FDGLDL W YP DK V+E+ F LLLSAAVS
Sbjct: 110 GFDGLDLAWLYPG----------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSA 159
Query: 1511 SKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYF-NANFTM 1569
K I+ YD+ +S LD+IS++TYD+HG W + GH +PL+ +D F NA++ +
Sbjct: 160 GKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGQEDASSRFSNADYAV 219
Query: 1570 NYWMKKGAPSRKLVMGV 1586
+Y ++ GAP+ KLVMG+
Sbjct: 220 SYMLRLGAPANKLVMGI 236
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 75/127 (59%), Gaps = 8/127 (6%)
Query: 2190 YKVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSHNNKLDLEQGF 2249
YK+ICYYTSW+ R+ +G P+ ID LCTH++Y+FA++ E+ N+
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWNDVT-----L 55
Query: 2250 YEKITKFNER--GIQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGL 2307
Y+ + R ++ +L++GGW+ ++S++ + +RR F++ V FL +GF+GL
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWNFG-PQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 2308 EFAWEYP 2314
+ AW YP
Sbjct: 115 DLAWLYP 121
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 2340 PYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQNLCSCG---PYPLLSA 2396
PYA G W++YDD ++ K + +K L GAMVW++DLDDF+ CG +PL SA
Sbjct: 295 PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRG-TFCGQNLTFPLTSA 353
Query: 2397 V 2397
V
Sbjct: 354 V 354
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 870 QVKFIKSNGYAGIMAWTIDLDDFHNKCC 897
+ +++K+ AG M W +DLDDF C
Sbjct: 315 KARYLKNRQLAGAMVWALDLDDFRGTFC 342
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 274 bits (701), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 154/379 (40%), Positives = 223/379 (58%), Gaps = 32/379 (8%)
Query: 1711 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1770
+K+VCY+T+W+ YR+ G P +D LCTH+IY FA + D + DTW D
Sbjct: 1 YKLVCYYTSWSQYREGDGSCFPDALDRFLCTHIIYSFANISNDHI-----DTWEWNDVTL 55
Query: 1771 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1828
Y + LK + +K L++GGWN + ++S++ ++ Q+R FI V F+ H FDGL
Sbjct: 56 YGMLNTLKNRNPNLKTLLSVGGWNFGS-QRFSKIASNTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 1829 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF------NPHDLLLSAAVSPSKAVI 1882
DL W YP DKQ F LIKE++A F LLLSAA+S K I
Sbjct: 115 DLAWLYPG----------RRDKQHFTTLIKEMKAEFIKEAQPGKKQLLLSAALSAGKVTI 164
Query: 1883 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPT--FNANYSLHYWV 1940
D++YDI +S++LD+IS+MTYD+HG W TGH +P++ D +P N +Y++ Y +
Sbjct: 165 DSSYDIAKISQHLDFISIMTYDFHGAWRGTTGHHSPLFRGQEDASPDRFSNTDYAVGYML 224
Query: 1941 SHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQ 2000
GA K++ G+P +G+SFTLA ++ G+ + G G T+ G LAYYEICD ++
Sbjct: 225 RLGAPASKLVMGIPTFGRSFTLA-SSETGVGAPISGPGIPGRFTKEAGTLAYYEICDFLR 283
Query: 2001 KDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFK- 2059
G V R +++ PYA KG+QWVG+DDQ + K +++K L GAM+WALDLDDF+
Sbjct: 284 --GATVHRILGQQV-PYATKGNQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLDDFQG 340
Query: 2060 NFCGCE-SYPLLKTINRVL 2077
+FCG + +PL I L
Sbjct: 341 SFCGQDLRFPLTNAIKDAL 359
Score = 206 bits (524), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 138/437 (31%), Positives = 212/437 (48%), Gaps = 89/437 (20%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFY 443
K+VCY T+WS R+ DG P+ +D LCTHI+Y+FA++ + + N D Y
Sbjct: 2 KLVCYYTSWSQYREGDGSCFPDALDRFLCTHIIYSFANISNDHIDTWEWN-----DVTLY 56
Query: 444 QRISSSPLVTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGL 503
+++ + +K L+++GGW S +++S++ S+ +R+ FIKSV FLR F GL
Sbjct: 57 GMLNTLK-NRNPNLKTLLSVGGWNFGS-QRFSKIASNTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 504 HFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEF------DKHDYSIAVGISGYKEIL 557
W YP + DK +F LI+E+KAEF K ++ +S K +
Sbjct: 115 DLAWLYP----------GRRDKQHFTTLIKEMKAEFIKEAQPGKKQLLLSAALSAGKVTI 164
Query: 558 EVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPNYNINT--ALKLID 615
+ +YD ++ H++F+S+M+YD+HGAW G TG SPL + P+ NT A+ +
Sbjct: 165 DSSYDIAKISQHLDFISIMTYDFHGAWRGTTGHHSPLFRGQEDASPDRFSNTDYAVGYML 224
Query: 616 ELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIK 675
LG K+V+G+P +G+S+TL E G+GA GPG+ G +T++ G LAYYEIC +
Sbjct: 225 RLGAPASKLVMGIPTFGRSFTLA-SSETGVGAPISGPGIPGRFTKEAGTLAYYEICDFL- 282
Query: 676 TRKWTVQRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKT 735
R TV R + G+ ++ Y K
Sbjct: 283 -RGATVHR-----------------------------ILGQ-----------QVPYATKG 301
Query: 736 RKWTVQRNTKSLEPFTFQGDQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLDDFHNKC 795
+W V Y+D S+ KV+++K AG M W +DLDDF
Sbjct: 302 NQW-------------------VGYDDQESVKSKVQYLKDRQLAGAMVWALDLDDFQGSF 342
Query: 796 CMES--FPLLRAVNRAF 810
C + FPL A+ A
Sbjct: 343 CGQDLRFPLTNAIKDAL 359
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/379 (30%), Positives = 189/379 (49%), Gaps = 35/379 (9%)
Query: 13 HQVVCYVEAKSAYRHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 72
+++VCY + S YR + + CTH+IY++A I S I DV
Sbjct: 1 YKLVCYYTSWSQYREGDGSCFPDALDRFLCTHIIYSFANI---SNDHIDTWEWNDVTL-- 55
Query: 73 YKSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLD 126
Y LK NP LK L+V F I S+ +SR FI SV + FDGLD
Sbjct: 56 YGMLNTLKNRNPNLKTLLSVGGWNFGSQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 127 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRR----NNYQLTLTSPGVIDRKT 182
L P ++ F+T I+E+ + + QL L++ + T
Sbjct: 116 LAWLYPG------------RRDKQHFTTLIKEMKAEFIKEAQPGKKQLLLSAALSAGKVT 163
Query: 183 --SLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYN 240
S DI+ ++ +D I + +++ H + Q ++ F+N + AV
Sbjct: 164 IDSSYDIAKISQHLDFISIMTYDF-HGAWRGTTGHHSPLFRGQEDASPDRFSNTDYAVGY 222
Query: 241 WIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNK 300
++ GA ++++GIP FG+S+ L + SE G+GA + GPG G++T+ G LA++E+C+
Sbjct: 223 MLRLGAPASKLVMGIPTFGRSFTLAS-SETGVGAPISGPGIPGRFTKEAGTLAYYEICDF 281
Query: 301 FKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRG 360
+ T H P+ K ++W+ Y++ +S++ K+ Y+KDR L GAM+W LDLDDF+G
Sbjct: 282 LRGAT-VHRILGQQVPYATKGNQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLDDFQG 340
Query: 361 -FCGQ--KYPLLSAVVSNL 376
FCGQ ++PL +A+ L
Sbjct: 341 SFCGQDLRFPLTNAIKDAL 359
Score = 137 bits (344), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 136/261 (52%), Gaps = 38/261 (14%)
Query: 1340 FKIVCYFTNWAWYRPGKGKY---VLKKVPWINILKLYVTLQTGLGTDQEKENTFLKISEL 1396
+K+VCY+T+W+ YR G G L + +I+ + + I
Sbjct: 1 YKLVCYYTSWSQYREGDGSCFPDALDRFLCTHIIYSFANISND------------HIDTW 48
Query: 1397 TYVHILFYERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLL 1454
+ + Y + TLK + +K L++GGWN ++S++ ++ +R+ FI+ V FL
Sbjct: 49 EWNDVTLYGMLNTLKNRNPNLKTLLSVGGWNFG-SQRFSKIASNTQSRRTFIKSVPPFLR 107
Query: 1455 KYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG------LLLSAAV 1508
+ FDGLDL W YP DK+ F ++E+ F LLLSAA+
Sbjct: 108 THGFDGLDLAWLYPG----------RRDKQHFTTLIKEMKAEFIKEAQPGKKQLLLSAAL 157
Query: 1509 SPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDD---DFFYFNA 1565
S K I+++YD+ +S+ LD+IS+MTYD+HG W TGH +PL+ +D D F N
Sbjct: 158 SAGKVTIDSSYDIAKISQHLDFISIMTYDFHGAWRGTTGHHSPLFRGQEDASPDRFS-NT 216
Query: 1566 NFTMNYWMKKGAPSRKLVMGV 1586
++ + Y ++ GAP+ KLVMG+
Sbjct: 217 DYAVGYMLRLGAPASKLVMGI 237
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 75/127 (59%), Gaps = 8/127 (6%)
Query: 2190 YKVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSHNNKLDLEQGF 2249
YK++CYYTSW+ R+ +G P+ +D LCTH++Y+FA++ + N+
Sbjct: 1 YKLVCYYTSWSQYREGDGSCFPDALDRFLCTHIIYSFANISNDHIDTWEWNDVT-----L 55
Query: 2250 YEKITKFNER--GIQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGL 2307
Y + R ++ +L++GGW + S ++S++ ++ +RR F++ V FL +GF+GL
Sbjct: 56 YGMLNTLKNRNPNLKTLLSVGGW-NFGSQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 2308 EFAWEYP 2314
+ AW YP
Sbjct: 115 DLAWLYP 121
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 2330 VVRDSLGARGPYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQNLCSCG 2389
V LG + PYA G W+ YDD ++ K + +K L GAMVW++DLDDFQ CG
Sbjct: 286 TVHRILGQQVPYATKGNQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLDDFQG-SFCG 344
Query: 2390 P---YPLLSAVNYELRNT 2404
+PL +A+ L T
Sbjct: 345 QDLRFPLTNAIKDALAAT 362
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 870 QVKFIKSNGYAGIMAWTIDLDDFHNKCCMDKSRF 903
+V+++K AG M W +DLDDF C RF
Sbjct: 316 KVQYLKDRQLAGAMVWALDLDDFQGSFCGQDLRF 349
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence Of
Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein From
Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide (Nag6)
And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 273 bits (697), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 152/378 (40%), Positives = 219/378 (57%), Gaps = 31/378 (8%)
Query: 1711 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1770
+K++CY+T+W+ YR+ G P ID LCTHVIY FA + +++ DTW D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 1771 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1828
Y+ + LK + +K L++GGWN ++S + + Q+R FI V F+ H FDGL
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWN-FGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 1829 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF------NPHDLLLSAAVSPSKAVI 1882
DL W YP DK+ L+KE++A F LLLSAAVS K I
Sbjct: 115 DLAWLYPG----------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAI 164
Query: 1883 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTF-NANYSLHYWVS 1941
D YDI +S +LD+IS++TYD+HG W + GH +P++A D + F NA+Y++ Y +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFAGNEDASSRFSNADYAVSYMLR 224
Query: 1942 HGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQK 2001
GA K++ G+P +G+SFTLA +K + + G G T+ +G LAYYEICD +
Sbjct: 225 LGAPANKLVMGIPTFGRSFTLA-SSKTDVGAPVSGPGVPGRFTKEKGILAYYEICDFLH- 282
Query: 2002 DGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFK-N 2060
G R R +++ PYA KG+QWV +DDQ + +KA ++K L GAM+WALDLDDF+
Sbjct: 283 -GATTHRFRDQQV-PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGT 340
Query: 2061 FCGCE-SYPLLKTINRVL 2077
FCG ++PL + VL
Sbjct: 341 FCGQNLTFPLTSAVKDVL 358
Score = 187 bits (475), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 126/432 (29%), Positives = 204/432 (47%), Gaps = 88/432 (20%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFY 443
K++CY T+WS R+ DG P+ ID LCTH++Y+FA++ N + N + + D
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWN-DVTLYDTLN 60
Query: 444 QRISSSPLVTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGL 503
+ +P K+K L+++GGW + E++S + S +R+ FIKSV FLR F GL
Sbjct: 61 TLKNRNP-----KLKTLLSVGGW-NFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 504 HFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKHDYS------IAVGISGYKEIL 557
W YP + DK + L++E+KAEF + + ++ +S K +
Sbjct: 115 DLAWLYP----------GRRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAI 164
Query: 558 EVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPNY-NINTALKLIDE 616
+ YD ++ H++F+SL++YD+HGAW G SPL + + + N + A+ +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFAGNEDASSRFSNADYAVSYMLR 224
Query: 617 LGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKT 676
LG K+V+G+P +G+S+TL K +GA GPG+ G +T++ G+LAYYEIC
Sbjct: 225 LGAPANKLVMGIPTFGRSFTLASSKTD-VGAPVSGPGVPGRFTKEKGILAYYEIC----- 278
Query: 677 RKWTVQRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTR 736
D HG + Q ++ Y K
Sbjct: 279 ----------------------DFLHGATTH--------RFRDQ-------QVPYATKGN 301
Query: 737 KWTVQRNTKSLEPFTFQGDQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLDDFHNKCC 796
+W + +S++ K +++K+ AG M W +DLDDF C
Sbjct: 302 QWVAYDDQESVK-------------------NKARYLKNRQLAGAMVWALDLDDFRGTFC 342
Query: 797 ME--SFPLLRAV 806
+ +FPL AV
Sbjct: 343 GQNLTFPLTSAV 354
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 121/376 (32%), Positives = 187/376 (49%), Gaps = 38/376 (10%)
Query: 13 HQVVCYVEAKSAYRHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 72
++++CY + S YR + + P CTHVIY++A I S I DV
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI---SNNEIDTWEWNDVTL-- 55
Query: 73 YKSFLGLKEANPELKVYLAVKS------NFVSITSDRESRLNFISSVLEMFDMYKFDGLD 126
Y + LK NP+LK L+V F +I S +SR FI SV + FDGLD
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 127 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLT---LTSPGVIDRKTS 183
L P ++ +T ++E+ + R T L S V K +
Sbjct: 116 LAWLYPG------------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIA 163
Query: 184 L---VDISVVAPLVDLILLKSFN-NDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVY 239
+ DI+ ++ +D I L +++ + V P N +S F+N + AV
Sbjct: 164 IDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFAGNEDASS---RFSNADYAVS 220
Query: 240 NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCN 299
++ GA ++++GIP FG+S+ L + S+ +GA V GPG G++T+ G LA++E+C+
Sbjct: 221 YMLRLGAPANKLVMGIPTFGRSFTLAS-SKTDVGAPVSGPGVPGRFTKEKGILAYYEICD 279
Query: 300 KFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFR 359
T F D P+ K ++W+ Y++ +S++ K Y+K+R L GAM+W LDLDDFR
Sbjct: 280 FLHGATTHRFRDQQ-VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFR 338
Query: 360 G-FCGQK--YPLLSAV 372
G FCGQ +PL SAV
Sbjct: 339 GTFCGQNLTFPLTSAV 354
Score = 131 bits (330), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 131/257 (50%), Gaps = 31/257 (12%)
Query: 1340 FKIVCYFTNWAWYRPGKGKYVLKKV-PWINILKLYVTLQTGLGTDQEKENTFLKISELTY 1398
+K++CY+T+W+ YR G G + P++ +Y E I +
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIY-----SFANISNNE-----IDTWEW 50
Query: 1399 VHILFYERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY 1456
+ Y+ + TLK + +K L++GGWN ++S + + +R+ FI+ V FL +
Sbjct: 51 NDVTLYDTLNTLKNRNPKLKTLLSVGGWNFG-PERFSAIASKTQSRRTFIKSVPPFLRTH 109
Query: 1457 QFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG------LLLSAAVSP 1510
FDGLDL W YP DK V+E+ F LLLSAAVS
Sbjct: 110 GFDGLDLAWLYPG----------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSA 159
Query: 1511 SKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYF-NANFTM 1569
K I+ YD+ +S LD+IS++TYD+HG W + GH +PL+ +D F NA++ +
Sbjct: 160 GKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFAGNEDASSRFSNADYAV 219
Query: 1570 NYWMKKGAPSRKLVMGV 1586
+Y ++ GAP+ KLVMG+
Sbjct: 220 SYMLRLGAPANKLVMGI 236
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 75/127 (59%), Gaps = 8/127 (6%)
Query: 2190 YKVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSHNNKLDLEQGF 2249
YK+ICYYTSW+ R+ +G P+ ID LCTH++Y+FA++ E+ N+
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWNDVT-----L 55
Query: 2250 YEKITKFNERG--IQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGL 2307
Y+ + R ++ +L++GGW+ +++S + + +RR F++ V FL +GF+GL
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFG-PERFSAIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 2308 EFAWEYP 2314
+ AW YP
Sbjct: 115 DLAWLYP 121
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 2340 PYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQNLCSCG---PYPLLSA 2396
PYA G W++YDD ++ K + +K L GAMVW++DLDDF+ CG +PL SA
Sbjct: 295 PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRG-TFCGQNLTFPLTSA 353
Query: 2397 V 2397
V
Sbjct: 354 V 354
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 870 QVKFIKSNGYAGIMAWTIDLDDFHNKCC 897
+ +++K+ AG M W +DLDDF C
Sbjct: 315 KARYLKNRQLAGAMVWALDLDDFRGTFC 342
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40 In
The Presense Of N,n',n''-triacetyl-chitotriose At 2.6a
Resolution
Length = 361
Score = 271 bits (694), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 151/378 (39%), Positives = 219/378 (57%), Gaps = 31/378 (8%)
Query: 1711 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1770
+K++CY+T+W+ YR+ G P ID LCTHVIY FA + +++ DTW D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 1771 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1828
Y+ + LK + +K L++GGWN ++S++ + Q+R FI V F+ H FDGL
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWN-FGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 1829 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF------NPHDLLLSAAVSPSKAVI 1882
DL W YP DK+ L+KE++A F LLLSAAVS K I
Sbjct: 115 DLAWLYPG----------RRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIAI 164
Query: 1883 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTF-NANYSLHYWVS 1941
D YDI +S +LD+IS++TYD+HG W + GH +P++ +D + F NA+Y++ Y +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDASSRFSNADYAVSYMLR 224
Query: 1942 HGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQK 2001
GA K++ G+P +G+SFTLA +G + G G T+ +G LAYYEICD +
Sbjct: 225 LGAPANKLVMGIPTFGRSFTLASSKTDG-GAPISGPGIPGRFTKEKGILAYYEICDFLH- 282
Query: 2002 DGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFK-N 2060
G R R +++ PYA KG+QWV +DDQ + +KA ++K L GAM+WALDLDDF+
Sbjct: 283 -GATTHRFRDQQV-PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGT 340
Query: 2061 FCGCE-SYPLLKTINRVL 2077
FCG ++PL + VL
Sbjct: 341 FCGQNLTFPLTSAVKDVL 358
Score = 192 bits (488), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 128/439 (29%), Positives = 206/439 (46%), Gaps = 88/439 (20%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFY 443
K++CY T+WS R+ DG P+ ID LCTH++Y+FA++ N + N + + D
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWN-DVTLYDTLN 60
Query: 444 QRISSSPLVTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGL 503
+ +P K+K L+++GGW + E++S++ S +R+ FIKSV FLR F GL
Sbjct: 61 TLKNRNP-----KLKTLLSVGGW-NFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 504 HFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKHDYS------IAVGISGYKEIL 557
W YP + DK + L++E+KAEF + + ++ +S K +
Sbjct: 115 DLAWLYP----------GRRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIAI 164
Query: 558 EVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPNY-NINTALKLIDE 616
+ YD ++ H++F+SL++YD+HGAW G SPL + + N + A+ +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDASSRFSNADYAVSYMLR 224
Query: 617 LGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKT 676
LG K+V+G+P +G+S+TL K G GA GPG+ G +T++ G+LAYYEIC
Sbjct: 225 LGAPANKLVMGIPTFGRSFTLASSKTDG-GAPISGPGIPGRFTKEKGILAYYEIC----- 278
Query: 677 RKWTVQRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTR 736
D HG + Q ++ Y K
Sbjct: 279 ----------------------DFLHGATTH--------RFRDQ-------QVPYATKGN 301
Query: 737 KWTVQRNTKSLEPFTFQGDQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLDDFHNKCC 796
+W + +S++ K +++K+ AG M W +DLDDF C
Sbjct: 302 QWVAYDDQESVK-------------------NKARYLKNRQLAGAMVWALDLDDFRGTFC 342
Query: 797 ME--SFPLLRAVNRAFGRL 813
+ +FPL AV R+
Sbjct: 343 GQNLTFPLTSAVKDVLARV 361
Score = 161 bits (408), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 184/376 (48%), Gaps = 38/376 (10%)
Query: 13 HQVVCYVEAKSAYRHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 72
++++CY + S YR + + P CTHVIY++A I S I DV
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI---SNNEIDTWEWNDVTL-- 55
Query: 73 YKSFLGLKEANPELKVYLAVKS------NFVSITSDRESRLNFISSVLEMFDMYKFDGLD 126
Y + LK NP+LK L+V F I S +SR FI SV + FDGLD
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 127 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLT---LTSPGVIDRKTS 183
L P ++ + ++E+ + R T L S V K +
Sbjct: 116 LAWLYPG------------RRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIA 163
Query: 184 L---VDISVVAPLVDLILLKSFN-NDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVY 239
+ DI+ ++ +D I L +++ + V P + N +S F+N + AV
Sbjct: 164 IDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDASS---RFSNADYAVS 220
Query: 240 NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCN 299
++ GA ++++GIP FG+S+ L + G GA + GPG G++T+ G LA++E+C+
Sbjct: 221 YMLRLGAPANKLVMGIPTFGRSFTLASSKTDG-GAPISGPGIPGRFTKEKGILAYYEICD 279
Query: 300 KFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFR 359
T F D P+ K ++W+ Y++ +S++ K Y+K+R L GAM+W LDLDDFR
Sbjct: 280 FLHGATTHRFRDQQ-VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFR 338
Query: 360 G-FCGQK--YPLLSAV 372
G FCGQ +PL SAV
Sbjct: 339 GTFCGQNLTFPLTSAV 354
Score = 134 bits (336), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 137/274 (50%), Gaps = 31/274 (11%)
Query: 1340 FKIVCYFTNWAWYRPGKGKYVLKKV-PWINILKLYVTLQTGLGTDQEKENTFLKISELTY 1398
+K++CY+T+W+ YR G G + P++ +Y ++ E I +
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI---SNNE-------IDTWEW 50
Query: 1399 VHILFYERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY 1456
+ Y+ + TLK + +K L++GGWN ++S++ + +R+ FI+ V FL +
Sbjct: 51 NDVTLYDTLNTLKNRNPKLKTLLSVGGWNFG-PERFSKIASKTQSRRTFIKSVPPFLRTH 109
Query: 1457 QFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG------LLLSAAVSP 1510
FDGLDL W YP DK V+E+ F LLLSAAVS
Sbjct: 110 GFDGLDLAWLYPG----------RRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSA 159
Query: 1511 SKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYF-NANFTM 1569
K I+ YD+ +S LD+IS++TYD+HG W + GH +PL+ D F NA++ +
Sbjct: 160 GKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDASSRFSNADYAV 219
Query: 1570 NYWMKKGAPSRKLVMGVHPLLSTITEVLGHGPGG 1603
+Y ++ GAP+ KLVMG+ + T GG
Sbjct: 220 SYMLRLGAPANKLVMGIPTFGRSFTLASSKTDGG 253
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 76/127 (59%), Gaps = 8/127 (6%)
Query: 2190 YKVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSHNNKLDLEQGF 2249
YK+ICYYTSW+ R+ +G P+ ID LCTH++Y+FA++ E+ N+
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWNDVT-----L 55
Query: 2250 YEKITKFNERG--IQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGL 2307
Y+ + R ++ +L++GGW+ +++S++ + +RR F++ V FL +GF+GL
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFG-PERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 2308 EFAWEYP 2314
+ AW YP
Sbjct: 115 DLAWLYP 121
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 2340 PYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQNLCSCG---PYPLLSA 2396
PYA G W++YDD ++ K + +K L GAMVW++DLDDF+ CG +PL SA
Sbjct: 295 PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRG-TFCGQNLTFPLTSA 353
Query: 2397 V 2397
V
Sbjct: 354 V 354
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 870 QVKFIKSNGYAGIMAWTIDLDDFHNKCC 897
+ +++K+ AG M W +DLDDF C
Sbjct: 315 KARYLKNRQLAGAMVWALDLDDFRGTFC 342
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 271 bits (693), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 151/378 (39%), Positives = 219/378 (57%), Gaps = 31/378 (8%)
Query: 1711 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1770
+K++CY+T+W+ YR+ G P ID LCTHVIY FA + +++ DTW D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYTFANISNNEI-----DTWEWNDVTL 55
Query: 1771 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1828
Y+ + LK + +K L++GGWN ++S++ + Q+R FI V F+ H FDGL
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWN-FGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 1829 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF------NPHDLLLSAAVSPSKAVI 1882
DL W YP DK+ L+KE++A F LLLSAAVS K I
Sbjct: 115 DLAWLYPG----------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAI 164
Query: 1883 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTF-NANYSLHYWVS 1941
D YDI +S +LD+IS++TYD+HG W + GH +P++ D + F NA+Y++ Y +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFSNADYAVSYMLR 224
Query: 1942 HGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQK 2001
GA K++ G+P +G+SFTLA +K + + G G T+ +G LAYYEICD +
Sbjct: 225 LGAPANKLVMGIPTFGRSFTLA-SSKTDVGAPVSGPGIPGRFTKEKGILAYYEICDFLH- 282
Query: 2002 DGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFK-N 2060
G R R +++ PYA KG+QWV +DDQ + +KA ++K L GAM+WALDLDDF+
Sbjct: 283 -GATTHRFRDQQV-PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGT 340
Query: 2061 FCGCE-SYPLLKTINRVL 2077
FCG ++PL + VL
Sbjct: 341 FCGQNLTFPLTSAVKDVL 358
Score = 187 bits (475), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 126/432 (29%), Positives = 203/432 (46%), Gaps = 88/432 (20%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFY 443
K++CY T+WS R+ DG P+ ID LCTH++Y FA++ N + N + + D
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYTFANISNNEIDTWEWN-DVTLYDTLN 60
Query: 444 QRISSSPLVTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGL 503
+ +P K+K L+++GGW + E++S++ S +R+ FIKSV FLR F GL
Sbjct: 61 TLKNRNP-----KLKTLLSVGGW-NFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 504 HFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKHDYS------IAVGISGYKEIL 557
W YP + DK + L++E+KAEF + + ++ +S K +
Sbjct: 115 DLAWLYP----------GRRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAI 164
Query: 558 EVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPNY-NINTALKLIDE 616
+ YD ++ H++F+SL++YD+HGAW G SPL + + N + A+ +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFSNADYAVSYMLR 224
Query: 617 LGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKT 676
LG K+V+G+P +G+S+TL K +GA GPG+ G +T++ G+LAYYEIC
Sbjct: 225 LGAPANKLVMGIPTFGRSFTLASSKTD-VGAPVSGPGIPGRFTKEKGILAYYEIC----- 278
Query: 677 RKWTVQRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTR 736
D HG + Q ++ Y K
Sbjct: 279 ----------------------DFLHGATTH--------RFRDQ-------QVPYATKGN 301
Query: 737 KWTVQRNTKSLEPFTFQGDQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLDDFHNKCC 796
+W + +S++ K +++K+ AG M W +DLDDF C
Sbjct: 302 QWVAYDDQESVK-------------------NKARYLKNRQLAGAMVWALDLDDFRGTFC 342
Query: 797 ME--SFPLLRAV 806
+ +FPL AV
Sbjct: 343 GQNLTFPLTSAV 354
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 121/376 (32%), Positives = 186/376 (49%), Gaps = 38/376 (10%)
Query: 13 HQVVCYVEAKSAYRHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 72
++++CY + S YR + + P CTHVIY +A I S I DV
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYTFANI---SNNEIDTWEWNDVTL-- 55
Query: 73 YKSFLGLKEANPELKVYLAVKS------NFVSITSDRESRLNFISSVLEMFDMYKFDGLD 126
Y + LK NP+LK L+V F I S +SR FI SV + FDGLD
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 127 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLT---LTSPGVIDRKTS 183
L P ++ +T ++E+ + R T L S V K +
Sbjct: 116 LAWLYPG------------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIA 163
Query: 184 L---VDISVVAPLVDLILLKSFN-NDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVY 239
+ DI+ ++ +D I L +++ + V P + N +S F+N + AV
Sbjct: 164 IDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASS---RFSNADYAVS 220
Query: 240 NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCN 299
++ GA ++++GIP FG+S+ L + S+ +GA V GPG G++T+ G LA++E+C+
Sbjct: 221 YMLRLGAPANKLVMGIPTFGRSFTLAS-SKTDVGAPVSGPGIPGRFTKEKGILAYYEICD 279
Query: 300 KFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFR 359
T F D P+ K ++W+ Y++ +S++ K Y+K+R L GAM+W LDLDDFR
Sbjct: 280 FLHGATTHRFRDQQ-VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFR 338
Query: 360 G-FCGQK--YPLLSAV 372
G FCGQ +PL SAV
Sbjct: 339 GTFCGQNLTFPLTSAV 354
Score = 134 bits (337), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 134/262 (51%), Gaps = 41/262 (15%)
Query: 1340 FKIVCYFTNWAWYRPGKGKYVLKKV-PWINILKLYVTLQTGLGTDQEKENTFLKISE--- 1395
+K++CY+T+W+ YR G G + P++ +Y TF IS
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIY---------------TFANISNNEI 45
Query: 1396 --LTYVHILFYERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVK 1451
+ + Y+ + TLK + +K L++GGWN ++S++ + +R+ FI+ V
Sbjct: 46 DTWEWNDVTLYDTLNTLKNRNPKLKTLLSVGGWNFG-PERFSKIASKTQSRRTFIKSVPP 104
Query: 1452 FLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG------LLLS 1505
FL + FDGLDL W YP DK V+E+ F LLLS
Sbjct: 105 FLRTHGFDGLDLAWLYPG----------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLS 154
Query: 1506 AAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYF-N 1564
AAVS K I+ YD+ +S LD+IS++TYD+HG W + GH +PL+ +D F N
Sbjct: 155 AAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFSN 214
Query: 1565 ANFTMNYWMKKGAPSRKLVMGV 1586
A++ ++Y ++ GAP+ KLVMG+
Sbjct: 215 ADYAVSYMLRLGAPANKLVMGI 236
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 75/127 (59%), Gaps = 8/127 (6%)
Query: 2190 YKVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSHNNKLDLEQGF 2249
YK+ICYYTSW+ R+ +G P+ ID LCTH++Y FA++ E+ N+
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYTFANISNNEIDTWEWNDVT-----L 55
Query: 2250 YEKITKFNERG--IQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGL 2307
Y+ + R ++ +L++GGW+ +++S++ + +RR F++ V FL +GF+GL
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFG-PERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 2308 EFAWEYP 2314
+ AW YP
Sbjct: 115 DLAWLYP 121
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 2340 PYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQNLCSCG---PYPLLSA 2396
PYA G W++YDD ++ K + +K L GAMVW++DLDDF+ CG +PL SA
Sbjct: 295 PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRG-TFCGQNLTFPLTSA 353
Query: 2397 V 2397
V
Sbjct: 354 V 354
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 870 QVKFIKSNGYAGIMAWTIDLDDFHNKCC 897
+ +++K+ AG M W +DLDDF C
Sbjct: 315 KARYLKNRQLAGAMVWALDLDDFRGTFC 342
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A Tripeptide
Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling Protein
With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling Protein
With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 271 bits (693), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 151/378 (39%), Positives = 220/378 (58%), Gaps = 31/378 (8%)
Query: 1711 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1770
+K++CY+T+W+ YR+ G P ID LCTHVIY FA + +++ DTW D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 1771 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1828
Y+ + LK + +K L++GGWN ++S++ + Q+R FI V F+ H FDGL
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWN-FGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 1829 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF------NPHDLLLSAAVSPSKAVI 1882
DL W YP DK+ L+KE++A F LLLSAAVS K I
Sbjct: 115 DLAWLYPG----------RRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIAI 164
Query: 1883 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTF-NANYSLHYWVS 1941
D YDI +S +LD+IS++TYD+HG W + GH +P++ +D + F NA+Y++ Y +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDASSRFSNADYAVSYMLR 224
Query: 1942 HGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQK 2001
GA K++ G+P +G+SFTLA +K + + G G T+ +G LAYYEICD +
Sbjct: 225 LGAPANKLVMGIPTFGRSFTLA-SSKTDVGAPISGPGIPGRFTKEKGILAYYEICDFLH- 282
Query: 2002 DGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFK-N 2060
G R R +++ PYA KG+QWV +DDQ + +KA ++K L GAM+WALDLDDF+
Sbjct: 283 -GATTHRFRDQQV-PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGT 340
Query: 2061 FCGCE-SYPLLKTINRVL 2077
FCG ++PL + VL
Sbjct: 341 FCGQNLTFPLTSAVKDVL 358
Score = 191 bits (484), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 127/439 (28%), Positives = 206/439 (46%), Gaps = 88/439 (20%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFY 443
K++CY T+WS R+ DG P+ ID LCTH++Y+FA++ N + N + + D
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWN-DVTLYDTLN 60
Query: 444 QRISSSPLVTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGL 503
+ +P K+K L+++GGW + E++S++ S +R+ FIKSV FLR F GL
Sbjct: 61 TLKNRNP-----KLKTLLSVGGW-NFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 504 HFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKHDYS------IAVGISGYKEIL 557
W YP + DK + L++E+KAEF + + ++ +S K +
Sbjct: 115 DLAWLYP----------GRRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIAI 164
Query: 558 EVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPNY-NINTALKLIDE 616
+ YD ++ H++F+SL++YD+HGAW G SPL + + N + A+ +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDASSRFSNADYAVSYMLR 224
Query: 617 LGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKT 676
LG K+V+G+P +G+S+TL K +GA GPG+ G +T++ G+LAYYEIC
Sbjct: 225 LGAPANKLVMGIPTFGRSFTLASSKTD-VGAPISGPGIPGRFTKEKGILAYYEIC----- 278
Query: 677 RKWTVQRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTR 736
D HG + Q ++ Y K
Sbjct: 279 ----------------------DFLHGATTH--------RFRDQ-------QVPYATKGN 301
Query: 737 KWTVQRNTKSLEPFTFQGDQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLDDFHNKCC 796
+W + +S++ K +++K+ AG M W +DLDDF C
Sbjct: 302 QWVAYDDQESVK-------------------NKARYLKNRQLAGAMVWALDLDDFRGTFC 342
Query: 797 ME--SFPLLRAVNRAFGRL 813
+ +FPL AV R+
Sbjct: 343 GQNLTFPLTSAVKDVLARV 361
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 186/376 (49%), Gaps = 38/376 (10%)
Query: 13 HQVVCYVEAKSAYRHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 72
++++CY + S YR + + P CTHVIY++A I S I DV
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI---SNNEIDTWEWNDVTL-- 55
Query: 73 YKSFLGLKEANPELKVYLAVKS------NFVSITSDRESRLNFISSVLEMFDMYKFDGLD 126
Y + LK NP+LK L+V F I S +SR FI SV + FDGLD
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 127 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLT---LTSPGVIDRKTS 183
L P ++ + ++E+ + R T L S V K +
Sbjct: 116 LAWLYPG------------RRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIA 163
Query: 184 L---VDISVVAPLVDLILLKSFN-NDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVY 239
+ DI+ ++ +D I L +++ + V P + N +S F+N + AV
Sbjct: 164 IDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDASS---RFSNADYAVS 220
Query: 240 NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCN 299
++ GA ++++GIP FG+S+ L + S+ +GA + GPG G++T+ G LA++E+C+
Sbjct: 221 YMLRLGAPANKLVMGIPTFGRSFTLAS-SKTDVGAPISGPGIPGRFTKEKGILAYYEICD 279
Query: 300 KFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFR 359
T F D P+ K ++W+ Y++ +S++ K Y+K+R L GAM+W LDLDDFR
Sbjct: 280 FLHGATTHRFRDQQ-VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFR 338
Query: 360 G-FCGQK--YPLLSAV 372
G FCGQ +PL SAV
Sbjct: 339 GTFCGQNLTFPLTSAV 354
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 133/257 (51%), Gaps = 31/257 (12%)
Query: 1340 FKIVCYFTNWAWYRPGKGKYVLKKV-PWINILKLYVTLQTGLGTDQEKENTFLKISELTY 1398
+K++CY+T+W+ YR G G + P++ +Y ++ E I +
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI---SNNE-------IDTWEW 50
Query: 1399 VHILFYERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY 1456
+ Y+ + TLK + +K L++GGWN ++S++ + +R+ FI+ V FL +
Sbjct: 51 NDVTLYDTLNTLKNRNPKLKTLLSVGGWNFG-PERFSKIASKTQSRRTFIKSVPPFLRTH 109
Query: 1457 QFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG------LLLSAAVSP 1510
FDGLDL W YP DK V+E+ F LLLSAAVS
Sbjct: 110 GFDGLDLAWLYPG----------RRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSA 159
Query: 1511 SKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYF-NANFTM 1569
K I+ YD+ +S LD+IS++TYD+HG W + GH +PL+ D F NA++ +
Sbjct: 160 GKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDASSRFSNADYAV 219
Query: 1570 NYWMKKGAPSRKLVMGV 1586
+Y ++ GAP+ KLVMG+
Sbjct: 220 SYMLRLGAPANKLVMGI 236
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 76/127 (59%), Gaps = 8/127 (6%)
Query: 2190 YKVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSHNNKLDLEQGF 2249
YK+ICYYTSW+ R+ +G P+ ID LCTH++Y+FA++ E+ N +
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWN-----DVTL 55
Query: 2250 YEKITKFNERG--IQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGL 2307
Y+ + R ++ +L++GGW+ +++S++ + +RR F++ V FL +GF+GL
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFG-PERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 2308 EFAWEYP 2314
+ AW YP
Sbjct: 115 DLAWLYP 121
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 2340 PYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQNLCSCG---PYPLLSA 2396
PYA G W++YDD ++ K + +K L GAMVW++DLDDF+ CG +PL SA
Sbjct: 295 PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRG-TFCGQNLTFPLTSA 353
Query: 2397 V 2397
V
Sbjct: 354 V 354
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 870 QVKFIKSNGYAGIMAWTIDLDDFHNKCC 897
+ +++K+ AG M W +DLDDF C
Sbjct: 315 KARYLKNRQLAGAMVWALDLDDFRGTFC 342
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary Gland
Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 270 bits (689), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 151/378 (39%), Positives = 218/378 (57%), Gaps = 31/378 (8%)
Query: 1711 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1770
+K++CY+T+W+ YR+ G P ID LCTHVIY FA + +++ DTW D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 1771 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1828
Y+ + LK + +K L++GGWN ++S + + Q+R FI V F+ H FDGL
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWN-FGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 1829 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF------NPHDLLLSAAVSPSKAVI 1882
DL W YP DK+ L+KE++A F LLLSAAVS K I
Sbjct: 115 DLAWLYPG----------RRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIAI 164
Query: 1883 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTF-NANYSLHYWVS 1941
D YDI +S +LD+IS++TYD+HG W + GH +P++ +D + F NA+Y++ Y +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDGSSRFSNADYAVSYMLR 224
Query: 1942 HGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQK 2001
GA K++ G+P +G+SFTLA +G + G G T+ +G LAYYEICD +
Sbjct: 225 LGAPANKLVMGIPTFGRSFTLASSKTDG-GAPISGPGIPGRFTKEKGILAYYEICDFLH- 282
Query: 2002 DGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKN- 2060
G R R +++ PYA KG+QWV +DDQ + +KA ++K L GAM+WALDLDDF+
Sbjct: 283 -GATTHRFRDQQV-PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGT 340
Query: 2061 FCGCE-SYPLLKTINRVL 2077
FCG ++PL + VL
Sbjct: 341 FCGQNLTFPLTSAVKDVL 358
Score = 189 bits (480), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 127/432 (29%), Positives = 203/432 (46%), Gaps = 88/432 (20%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFY 443
K++CY T+WS R+ DG P+ ID LCTH++Y+FA++ N + N + + D
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWN-DVTLYDTLN 60
Query: 444 QRISSSPLVTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGL 503
+ +P K+K L+++GGW + E++S + S +R+ FIKSV FLR F GL
Sbjct: 61 TLKNRNP-----KLKTLLSVGGW-NFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 504 HFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKHDYS------IAVGISGYKEIL 557
W YP + DK + L++E+KAEF + + ++ +S K +
Sbjct: 115 DLAWLYP----------GRRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIAI 164
Query: 558 EVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPNY-NINTALKLIDE 616
+ YD ++ H++F+SL++YD+HGAW G SPL + + N + A+ +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDGSSRFSNADYAVSYMLR 224
Query: 617 LGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKT 676
LG K+V+G+P +G+S+TL K G GA GPG+ G +T++ G+LAYYEIC
Sbjct: 225 LGAPANKLVMGIPTFGRSFTLASSKTDG-GAPISGPGIPGRFTKEKGILAYYEIC----- 278
Query: 677 RKWTVQRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTR 736
D HG + Q ++ Y K
Sbjct: 279 ----------------------DFLHGATTH--------RFRDQ-------QVPYATKGN 301
Query: 737 KWTVQRNTKSLEPFTFQGDQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLDDFHNKCC 796
+W + +S++ K +++K+ AG M W +DLDDF C
Sbjct: 302 QWVAYDDQESVK-------------------NKARYLKNRQLAGAMVWALDLDDFRGTFC 342
Query: 797 ME--SFPLLRAV 806
+ +FPL AV
Sbjct: 343 GQNLTFPLTSAV 354
Score = 161 bits (407), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 185/376 (49%), Gaps = 38/376 (10%)
Query: 13 HQVVCYVEAKSAYRHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 72
++++CY + S YR + + P CTHVIY++A I S I DV
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI---SNNEIDTWEWNDVTL-- 55
Query: 73 YKSFLGLKEANPELKVYLAVKS------NFVSITSDRESRLNFISSVLEMFDMYKFDGLD 126
Y + LK NP+LK L+V F +I S +SR FI SV + FDGLD
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 127 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLT---LTSPGVIDRKTS 183
L P ++ + ++E+ + R T L S V K +
Sbjct: 116 LAWLYPG------------RRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIA 163
Query: 184 L---VDISVVAPLVDLILLKSFN-NDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVY 239
+ DI+ ++ +D I L +++ + V P + N +S F+N + AV
Sbjct: 164 IDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDGSS---RFSNADYAVS 220
Query: 240 NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCN 299
++ GA ++++GIP FG+S+ L + G GA + GPG G++T+ G LA++E+C+
Sbjct: 221 YMLRLGAPANKLVMGIPTFGRSFTLASSKTDG-GAPISGPGIPGRFTKEKGILAYYEICD 279
Query: 300 KFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFR 359
T F D P+ K ++W+ Y++ +S++ K Y+K+R L GAM+W LDLDDFR
Sbjct: 280 FLHGATTHRFRDQQ-VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFR 338
Query: 360 G-FCGQK--YPLLSAV 372
G FCGQ +PL SAV
Sbjct: 339 GTFCGQNLTFPLTSAV 354
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 136/274 (49%), Gaps = 31/274 (11%)
Query: 1340 FKIVCYFTNWAWYRPGKGKYVLKKV-PWINILKLYVTLQTGLGTDQEKENTFLKISELTY 1398
+K++CY+T+W+ YR G G + P++ +Y ++ E I +
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI---SNNE-------IDTWEW 50
Query: 1399 VHILFYERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY 1456
+ Y+ + TLK + +K L++GGWN ++S + + +R+ FI+ V FL +
Sbjct: 51 NDVTLYDTLNTLKNRNPKLKTLLSVGGWNFG-PERFSAIASKTQSRRTFIKSVPPFLRTH 109
Query: 1457 QFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG------LLLSAAVSP 1510
FDGLDL W YP DK V+E+ F LLLSAAVS
Sbjct: 110 GFDGLDLAWLYPG----------RRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSA 159
Query: 1511 SKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYF-NANFTM 1569
K I+ YD+ +S LD+IS++TYD+HG W + GH +PL+ D F NA++ +
Sbjct: 160 GKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDGSSRFSNADYAV 219
Query: 1570 NYWMKKGAPSRKLVMGVHPLLSTITEVLGHGPGG 1603
+Y ++ GAP+ KLVMG+ + T GG
Sbjct: 220 SYMLRLGAPANKLVMGIPTFGRSFTLASSKTDGG 253
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 75/127 (59%), Gaps = 8/127 (6%)
Query: 2190 YKVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSHNNKLDLEQGF 2249
YK+ICYYTSW+ R+ +G P+ ID LCTH++Y+FA++ E+ N+
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWNDVT-----L 55
Query: 2250 YEKITKFNERG--IQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGL 2307
Y+ + R ++ +L++GGW+ +++S + + +RR F++ V FL +GF+GL
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFG-PERFSAIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 2308 EFAWEYP 2314
+ AW YP
Sbjct: 115 DLAWLYP 121
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 2340 PYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQNLCSCG---PYPLLSA 2396
PYA G W++YDD ++ K + +K L GAMVW++DLDDF+ CG +PL SA
Sbjct: 295 PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRG-TFCGQNLTFPLTSA 353
Query: 2397 V 2397
V
Sbjct: 354 V 354
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 870 QVKFIKSNGYAGIMAWTIDLDDFHNKCC 897
+ +++K+ AG M W +DLDDF C
Sbjct: 315 KARYLKNRQLAGAMVWALDLDDFRGTFC 342
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling Protein
From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 269 bits (687), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 150/378 (39%), Positives = 222/378 (58%), Gaps = 31/378 (8%)
Query: 1711 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1770
+K++CY+T+W+ YR+ G P ID LCTHVIY FA + +++ DTW D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 1771 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1828
Y+ + LK + +K L++GGWN + ++S++ + Q+R FI V F+ H FDGL
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWNFGS-ERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 1829 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF------NPHDLLLSAAVSPSKAVI 1882
DL W YP W+ DK+ L+KE++A F LLLSAAV+ K I
Sbjct: 115 DLAWLYPG-WR---------DKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVTAGKIAI 164
Query: 1883 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTF-NANYSLHYWVS 1941
D YDI +S +LD+IS++TYD+HG W GH +P++ +D + F NA+Y++ Y +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGGWRGTVGHHSPLFRGNSDGSSRFSNADYAVSYMLR 224
Query: 1942 HGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQK 2001
GA K++ G+P +G+S+TLA + + + G G+ T+ +G LAYYEICD +
Sbjct: 225 LGAPANKLVMGIPTFGRSYTLASSSTR-VGAPISGPGIPGQFTKEKGILAYYEICDFLH- 282
Query: 2002 DGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKN- 2060
G R R +++ PYA KG+QWV +DDQ + +KA ++K L GAM+WALDLDDF+
Sbjct: 283 -GATTHRFRDQQV-PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGT 340
Query: 2061 FCGCE-SYPLLKTINRVL 2077
FCG ++PL I VL
Sbjct: 341 FCGQNLTFPLTSAIKDVL 358
Score = 190 bits (482), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 126/439 (28%), Positives = 206/439 (46%), Gaps = 88/439 (20%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFY 443
K++CY T+WS R+ DG P+ ID LCTH++Y+FA++ N + N + + D
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWN-DVTLYDTLN 60
Query: 444 QRISSSPLVTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGL 503
+ +P +K L+++GGW S E++S++ S +R+ FIKSV FLR F GL
Sbjct: 61 TLKNRNP-----NLKTLLSVGGWNFGS-ERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 504 HFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKHDYS------IAVGISGYKEIL 557
W YP W+ DK + L++E+KAEF + + ++ ++ K +
Sbjct: 115 DLAWLYP-GWR---------DKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVTAGKIAI 164
Query: 558 EVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPNY-NINTALKLIDE 616
+ YD ++ H++F+SL++YD+HG W G G SPL + + N + A+ +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGGWRGTVGHHSPLFRGNSDGSSRFSNADYAVSYMLR 224
Query: 617 LGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKT 676
LG K+V+G+P +G+SYTL +GA GPG+ G++T++ G+LAYYEIC
Sbjct: 225 LGAPANKLVMGIPTFGRSYTLASSSTR-VGAPISGPGIPGQFTKEKGILAYYEIC----- 278
Query: 677 RKWTVQRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTR 736
D HG + Q ++ Y K
Sbjct: 279 ----------------------DFLHGATTH--------RFRDQ-------QVPYATKGN 301
Query: 737 KWTVQRNTKSLEPFTFQGDQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLDDFHNKCC 796
+W + +S++ K +++K+ AG M W +DLDDF C
Sbjct: 302 QWVAYDDQESVK-------------------NKARYLKNRQLAGAMVWALDLDDFRGTFC 342
Query: 797 ME--SFPLLRAVNRAFGRL 813
+ +FPL A+ R+
Sbjct: 343 GQNLTFPLTSAIKDVLARV 361
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 185/376 (49%), Gaps = 38/376 (10%)
Query: 13 HQVVCYVEAKSAYRHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 72
++++CY + S YR + + P CTHVIY++A I S I DV
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI---SNNEIDTWEWNDVTL-- 55
Query: 73 YKSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLD 126
Y + LK NP LK L+V F I S +SR FI SV + FDGLD
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWNFGSERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 127 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLT---LTSPGVIDRKTS 183
L P ++ +T ++E+ + R T L S V K +
Sbjct: 116 LAWLYPGWR------------DKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVTAGKIA 163
Query: 184 L---VDISVVAPLVDLILLKSFN-NDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVY 239
+ DI+ ++ +D I L +++ + V P + N +S F+N + AV
Sbjct: 164 IDRGYDIAQISRHLDFISLLTYDFHGGWRGTVGHHSPLFRGNSDGSS---RFSNADYAVS 220
Query: 240 NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCN 299
++ GA ++++GIP FG+SY L + S +GA + GPG G++T+ G LA++E+C+
Sbjct: 221 YMLRLGAPANKLVMGIPTFGRSYTLASSSTR-VGAPISGPGIPGQFTKEKGILAYYEICD 279
Query: 300 KFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFR 359
T F D P+ K ++W+ Y++ +S++ K Y+K+R L GAM+W LDLDDFR
Sbjct: 280 FLHGATTHRFRDQQ-VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFR 338
Query: 360 G-FCGQK--YPLLSAV 372
G FCGQ +PL SA+
Sbjct: 339 GTFCGQNLTFPLTSAI 354
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 147/290 (50%), Gaps = 39/290 (13%)
Query: 1340 FKIVCYFTNWAWYRPGKGKYVLKKV-PWINILKLYVTLQTGLGTDQEKENTFLKISELTY 1398
+K++CY+T+W+ YR G G + P++ +Y ++ E I +
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI---SNNE-------IDTWEW 50
Query: 1399 VHILFYERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY 1456
+ Y+ + TLK + +K L++GGWN ++S++ + +R+ FI+ V FL +
Sbjct: 51 NDVTLYDTLNTLKNRNPNLKTLLSVGGWNFG-SERFSKIASKTQSRRTFIKSVPPFLRTH 109
Query: 1457 QFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG------LLLSAAVSP 1510
FDGLDL W YP W+ DK V+E+ F LLLSAAV+
Sbjct: 110 GFDGLDLAWLYP-GWR---------DKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVTA 159
Query: 1511 SKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYF-NANFTM 1569
K I+ YD+ +S LD+IS++TYD+HG W GH +PL+ D F NA++ +
Sbjct: 160 GKIAIDRGYDIAQISRHLDFISLLTYDFHGGWRGTVGHHSPLFRGNSDGSSRFSNADYAV 219
Query: 1570 NYWMKKGAPSRKLVMGV------HPLLSTITEVLG--HGPGGNYESTTEE 1611
+Y ++ GAP+ KLVMG+ + L S+ T V GPG + T E+
Sbjct: 220 SYMLRLGAPANKLVMGIPTFGRSYTLASSSTRVGAPISGPGIPGQFTKEK 269
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 86/146 (58%), Gaps = 13/146 (8%)
Query: 2190 YKVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSHNNKLDLEQGF 2249
YK+ICYYTSW+ R+ +G P+ ID LCTH++Y+FA++ E+ N+
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWNDVT-----L 55
Query: 2250 YEKITKFNER--GIQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGL 2307
Y+ + R ++ +L++GGW+ S+++S++ + +RR F++ V FL +GF+GL
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWNFG-SERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 2308 EFAWEYPKCWQTCSTVKSHEWTVVRD 2333
+ AW YP W+ K H T+V++
Sbjct: 115 DLAWLYPG-WRD----KRHLTTLVKE 135
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 2340 PYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQNLCSCG---PYPLLSA 2396
PYA G W++YDD ++ K + +K L GAMVW++DLDDF+ CG +PL SA
Sbjct: 295 PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRG-TFCGQNLTFPLTSA 353
Query: 2397 V 2397
+
Sbjct: 354 I 354
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 870 QVKFIKSNGYAGIMAWTIDLDDFHNKCC 897
+ +++K+ AG M W +DLDDF C
Sbjct: 315 KARYLKNRQLAGAMVWALDLDDFRGTFC 342
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 268 bits (685), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 151/378 (39%), Positives = 222/378 (58%), Gaps = 31/378 (8%)
Query: 1711 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1770
+K++CY+T+W+ YR+ G P ID LCTHVIY FA + +++ DTW D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 1771 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1828
Y+ + LK + +K L++GGWN + ++S++ + Q+R FI V F+ H FDGL
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWNFGS-ERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 1829 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF------NPHDLLLSAAVSPSKAVI 1882
DL W YP W+ DK+ L+KE++A F LLLSAAV K I
Sbjct: 115 DLAWLYPG-WR---------DKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVPAGKIAI 164
Query: 1883 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTF-NANYSLHYWVS 1941
D YDI +S +LD+IS++TYD+HG W GH +P++ +D + F NA+Y++ Y +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGGWRGTVGHHSPLFRGNSDGSSRFSNADYAVSYMLR 224
Query: 1942 HGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQK 2001
GA K++ G+P +G+S+TLA +K + + G G+ T+ +G LAYYEICD +
Sbjct: 225 LGAPANKLVMGIPTFGRSYTLA-SSKTDVGAPISGPGIPGQFTKEKGTLAYYEICDFLH- 282
Query: 2002 DGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKN- 2060
G R R +++ PYA KG+QWV +DDQ + +KA ++K L GAM+WALDLDDF+
Sbjct: 283 -GATTHRFRDQQV-PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGT 340
Query: 2061 FCGCE-SYPLLKTINRVL 2077
FCG ++PL I VL
Sbjct: 341 FCGQNLTFPLTSAIKDVL 358
Score = 189 bits (480), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 127/439 (28%), Positives = 205/439 (46%), Gaps = 88/439 (20%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFY 443
K++CY T+WS R+ DG P+ ID LCTH++Y+FA++ N + N + + D
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWN-DVTLYDTLN 60
Query: 444 QRISSSPLVTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGL 503
+ +P +K L+++GGW S E++S++ S +R+ FIKSV FLR F GL
Sbjct: 61 TLKNRNP-----NLKTLLSVGGWNFGS-ERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 504 HFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKHDYS------IAVGISGYKEIL 557
W YP W+ DK + L++E+KAEF + + ++ + K +
Sbjct: 115 DLAWLYP-GWR---------DKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVPAGKIAI 164
Query: 558 EVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPNY-NINTALKLIDE 616
+ YD ++ H++F+SL++YD+HG W G G SPL + + N + A+ +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGGWRGTVGHHSPLFRGNSDGSSRFSNADYAVSYMLR 224
Query: 617 LGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKT 676
LG K+V+G+P +G+SYTL K +GA GPG+ G++T++ G LAYYEIC
Sbjct: 225 LGAPANKLVMGIPTFGRSYTLASSKTD-VGAPISGPGIPGQFTKEKGTLAYYEIC----- 278
Query: 677 RKWTVQRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTR 736
D HG + Q ++ Y K
Sbjct: 279 ----------------------DFLHGATTH--------RFRDQ-------QVPYATKGN 301
Query: 737 KWTVQRNTKSLEPFTFQGDQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLDDFHNKCC 796
+W + +S++ K +++K+ AG M W +DLDDF C
Sbjct: 302 QWVAYDDQESVK-------------------NKARYLKNRQLAGAMVWALDLDDFRGTFC 342
Query: 797 ME--SFPLLRAVNRAFGRL 813
+ +FPL A+ R+
Sbjct: 343 GQNLTFPLTSAIKDVLARV 361
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 186/376 (49%), Gaps = 38/376 (10%)
Query: 13 HQVVCYVEAKSAYRHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 72
++++CY + S YR + + P CTHVIY++A I S I DV
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI---SNNEIDTWEWNDVTL-- 55
Query: 73 YKSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLD 126
Y + LK NP LK L+V F I S +SR FI SV + FDGLD
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWNFGSERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 127 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLT---LTSPGVIDRKTS 183
L P ++ +T ++E+ + R T L S V K +
Sbjct: 116 LAWLYPGWR------------DKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVPAGKIA 163
Query: 184 L---VDISVVAPLVDLILLKSFN-NDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVY 239
+ DI+ ++ +D I L +++ + V P + N +S F+N + AV
Sbjct: 164 IDRGYDIAQISRHLDFISLLTYDFHGGWRGTVGHHSPLFRGNSDGSS---RFSNADYAVS 220
Query: 240 NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCN 299
++ GA ++++GIP FG+SY L + S+ +GA + GPG G++T+ G LA++E+C+
Sbjct: 221 YMLRLGAPANKLVMGIPTFGRSYTLAS-SKTDVGAPISGPGIPGQFTKEKGTLAYYEICD 279
Query: 300 KFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFR 359
T F D P+ K ++W+ Y++ +S++ K Y+K+R L GAM+W LDLDDFR
Sbjct: 280 FLHGATTHRFRDQQ-VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFR 338
Query: 360 G-FCGQK--YPLLSAV 372
G FCGQ +PL SA+
Sbjct: 339 GTFCGQNLTFPLTSAI 354
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 147/290 (50%), Gaps = 39/290 (13%)
Query: 1340 FKIVCYFTNWAWYRPGKGKYVLKKV-PWINILKLYVTLQTGLGTDQEKENTFLKISELTY 1398
+K++CY+T+W+ YR G G + P++ +Y ++ E I +
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI---SNNE-------IDTWEW 50
Query: 1399 VHILFYERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY 1456
+ Y+ + TLK + +K L++GGWN ++S++ + +R+ FI+ V FL +
Sbjct: 51 NDVTLYDTLNTLKNRNPNLKTLLSVGGWNFG-SERFSKIASKTQSRRTFIKSVPPFLRTH 109
Query: 1457 QFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG------LLLSAAVSP 1510
FDGLDL W YP W+ DK V+E+ F LLLSAAV
Sbjct: 110 GFDGLDLAWLYP-GWR---------DKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVPA 159
Query: 1511 SKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYF-NANFTM 1569
K I+ YD+ +S LD+IS++TYD+HG W GH +PL+ D F NA++ +
Sbjct: 160 GKIAIDRGYDIAQISRHLDFISLLTYDFHGGWRGTVGHHSPLFRGNSDGSSRFSNADYAV 219
Query: 1570 NYWMKKGAPSRKLVMGV------HPLLSTITEVLG--HGPGGNYESTTEE 1611
+Y ++ GAP+ KLVMG+ + L S+ T+V GPG + T E+
Sbjct: 220 SYMLRLGAPANKLVMGIPTFGRSYTLASSKTDVGAPISGPGIPGQFTKEK 269
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 86/146 (58%), Gaps = 13/146 (8%)
Query: 2190 YKVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSHNNKLDLEQGF 2249
YK+ICYYTSW+ R+ +G P+ ID LCTH++Y+FA++ E+ N+
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWNDVT-----L 55
Query: 2250 YEKITKFNER--GIQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGL 2307
Y+ + R ++ +L++GGW+ S+++S++ + +RR F++ V FL +GF+GL
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWNFG-SERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 2308 EFAWEYPKCWQTCSTVKSHEWTVVRD 2333
+ AW YP W+ K H T+V++
Sbjct: 115 DLAWLYPG-WRD----KRHLTTLVKE 135
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 2340 PYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQNLCSCG---PYPLLSA 2396
PYA G W++YDD ++ K + +K L GAMVW++DLDDF+ CG +PL SA
Sbjct: 295 PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRG-TFCGQNLTFPLTSA 353
Query: 2397 V 2397
+
Sbjct: 354 I 354
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 870 QVKFIKSNGYAGIMAWTIDLDDFHNKCC 897
+ +++K+ AG M W +DLDDF C
Sbjct: 315 KARYLKNRQLAGAMVWALDLDDFRGTFC 342
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 267 bits (683), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 150/378 (39%), Positives = 221/378 (58%), Gaps = 31/378 (8%)
Query: 1711 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1770
+K++CY+T+W+ YR+ G P ID LCTHVIY FA + +++ DTW D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 1771 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1828
Y+ + LK + +K L++GGWN ++S++ + Q+R FI V F+ H FDGL
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWN-YGSQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 1829 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF------NPHDLLLSAAVSPSKAVI 1882
DL W +P W+ DK+ L+KE++A F LLLSAAV+ K I
Sbjct: 115 DLAWLWPG-WR---------DKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVTAGKIAI 164
Query: 1883 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTF-NANYSLHYWVS 1941
D YDI +S +LD+IS++TYD+HG W + GH +P++ D + F NA+Y++ Y +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFSNADYAVSYMLR 224
Query: 1942 HGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQK 2001
GA K++ G+P +G+S+TLA +K + + G G T+ +G LAYYEICD +
Sbjct: 225 LGAPANKLVMGIPTFGRSYTLA-SSKTDVGAPISGPGIPGRFTKWKGILAYYEICDFLH- 282
Query: 2002 DGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFK-N 2060
G R R +++ PYA KG+QWV +DDQ + +KA ++K L GAM+WALDLDDF+
Sbjct: 283 -GATTHRFRDQQV-PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGT 340
Query: 2061 FCGCE-SYPLLKTINRVL 2077
FCG ++PL I VL
Sbjct: 341 FCGQNLTFPLTSAIKDVL 358
Score = 184 bits (467), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 125/439 (28%), Positives = 205/439 (46%), Gaps = 88/439 (20%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFY 443
K++CY T+WS R+ DG P+ ID LCTH++Y+FA++ N + N + + D
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWN-DVTLYDTLN 60
Query: 444 QRISSSPLVTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGL 503
+ +P +K L+++GGW S +++S++ S +R+ FIKSV FLR F GL
Sbjct: 61 TLKNRNP-----NLKTLLSVGGWNYGS-QRFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 504 HFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKHDYS------IAVGISGYKEIL 557
W +P W+ DK + L++E+KAEF + + ++ ++ K +
Sbjct: 115 DLAWLWP-GWR---------DKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVTAGKIAI 164
Query: 558 EVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPNY-NINTALKLIDE 616
+ YD ++ H++F+SL++YD+HGAW G SPL + + N + A+ +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFSNADYAVSYMLR 224
Query: 617 LGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKT 676
LG K+V+G+P +G+SYTL K +GA GPG+ G +T+ G+LAYYEIC
Sbjct: 225 LGAPANKLVMGIPTFGRSYTLASSKTD-VGAPISGPGIPGRFTKWKGILAYYEIC----- 278
Query: 677 RKWTVQRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTR 736
D HG + Q ++ Y K
Sbjct: 279 ----------------------DFLHGATTH--------RFRDQ-------QVPYATKGN 301
Query: 737 KWTVQRNTKSLEPFTFQGDQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLDDFHNKCC 796
+W + +S++ K +++K+ AG M W +DLDDF C
Sbjct: 302 QWVAYDDQESVK-------------------NKARYLKNRQLAGAMVWALDLDDFRGTFC 342
Query: 797 ME--SFPLLRAVNRAFGRL 813
+ +FPL A+ R+
Sbjct: 343 GQNLTFPLTSAIKDVLARV 361
Score = 164 bits (416), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 186/376 (49%), Gaps = 38/376 (10%)
Query: 13 HQVVCYVEAKSAYRHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 72
++++CY + S YR + + P CTHVIY++A I S I DV
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI---SNNEIDTWEWNDVTL-- 55
Query: 73 YKSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLD 126
Y + LK NP LK L+V F I S +SR FI SV + FDGLD
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWNYGSQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 127 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLT---LTSPGVIDRKTS 183
L P ++ +T ++E+ + R T L S V K +
Sbjct: 116 LAWLWPGWR------------DKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVTAGKIA 163
Query: 184 L---VDISVVAPLVDLILLKSFN-NDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVY 239
+ DI+ ++ +D I L +++ + V P + N +S F+N + AV
Sbjct: 164 IDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASS---RFSNADYAVS 220
Query: 240 NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCN 299
++ GA ++++GIP FG+SY L + S+ +GA + GPG G++T+ G LA++E+C+
Sbjct: 221 YMLRLGAPANKLVMGIPTFGRSYTLAS-SKTDVGAPISGPGIPGRFTKWKGILAYYEICD 279
Query: 300 KFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFR 359
T F D P+ K ++W+ Y++ +S++ K Y+K+R L GAM+W LDLDDFR
Sbjct: 280 FLHGATTHRFRDQQ-VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFR 338
Query: 360 G-FCGQK--YPLLSAV 372
G FCGQ +PL SA+
Sbjct: 339 GTFCGQNLTFPLTSAI 354
Score = 132 bits (332), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 144/281 (51%), Gaps = 39/281 (13%)
Query: 1340 FKIVCYFTNWAWYRPGKGKYVLKKV-PWINILKLYVTLQTGLGTDQEKENTFLKISELTY 1398
+K++CY+T+W+ YR G G + P++ +Y E I +
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIY-----SFANISNNE-----IDTWEW 50
Query: 1399 VHILFYERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY 1456
+ Y+ + TLK + +K L++GGWN ++S++ + +R+ FI+ V FL +
Sbjct: 51 NDVTLYDTLNTLKNRNPNLKTLLSVGGWNYG-SQRFSKIASKTQSRRTFIKSVPPFLRTH 109
Query: 1457 QFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG------LLLSAAVSP 1510
FDGLDL W +P W+ DK V+E+ F LLLSAAV+
Sbjct: 110 GFDGLDLAWLWP-GWR---------DKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVTA 159
Query: 1511 SKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYF-NANFTM 1569
K I+ YD+ +S LD+IS++TYD+HG W + GH +PL+ +D F NA++ +
Sbjct: 160 GKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFSNADYAV 219
Query: 1570 NYWMKKGAPSRKLVMGV------HPLLSTITEVLG--HGPG 1602
+Y ++ GAP+ KLVMG+ + L S+ T+V GPG
Sbjct: 220 SYMLRLGAPANKLVMGIPTFGRSYTLASSKTDVGAPISGPG 260
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 85/146 (58%), Gaps = 13/146 (8%)
Query: 2190 YKVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSHNNKLDLEQGF 2249
YK+ICYYTSW+ R+ +G P+ ID LCTH++Y+FA++ E+ N +
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWN-----DVTL 55
Query: 2250 YEKITKFNER--GIQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGL 2307
Y+ + R ++ +L++GGW + S ++S++ + +RR F++ V FL +GF+GL
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGW-NYGSQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 2308 EFAWEYPKCWQTCSTVKSHEWTVVRD 2333
+ AW +P W+ K H T+V++
Sbjct: 115 DLAWLWPG-WRD----KRHLTTLVKE 135
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 2340 PYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQNLCSCG---PYPLLSA 2396
PYA G W++YDD ++ K + +K L GAMVW++DLDDF+ CG +PL SA
Sbjct: 295 PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRG-TFCGQNLTFPLTSA 353
Query: 2397 V 2397
+
Sbjct: 354 I 354
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 870 QVKFIKSNGYAGIMAWTIDLDDFHNKCC 897
+ +++K+ AG M W +DLDDF C
Sbjct: 315 KARYLKNRQLAGAMVWALDLDDFRGTFC 342
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 259 bits (661), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 144/382 (37%), Positives = 226/382 (59%), Gaps = 36/382 (9%)
Query: 1711 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1770
+K+VCYFTNW+ RQ GK+ P +ID LC+H+IY FA ++ ++++IK +
Sbjct: 2 YKLVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFASIENNKVIIKDKS-----EVML 56
Query: 1771 YEKVTALKKKG--VKVTLAIGGWNDSAGNK-YSRLVNSQQARSKFIAHVVNFILEHNFDG 1827
Y+ + +LK K +K+ L+IGG+ G+K + +V+S +R +FI ++ F+ HNFDG
Sbjct: 57 YQTINSLKTKNPKLKILLSIGGY--LFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDG 114
Query: 1828 LDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN-------PHDLLLSAAVSPSKA 1880
LD+ W YP + F LI EL AF LLL+A VS +
Sbjct: 115 LDVSWIYPD----------QKENTHFTVLIHELAEAFQKDFTKSTKERLLLTAGVSAGRQ 164
Query: 1881 VIDNAYDIPVMSENLDWISVMTYDYHGQWDKK--TGHVAPMYALPNDTTPT--FNANYSL 1936
+IDN+Y + ++++LD+I+++++D+HG W+K TGH +P+ D P+ +N Y++
Sbjct: 165 MIDNSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSYYNVEYAV 224
Query: 1937 HYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEIC 1996
YW+ G +KV+ G+P YG SFTLA + + + G AG T + GFLAYYEIC
Sbjct: 225 GYWIHKGMPSEKVVMGIPTYGHSFTLASA-ETTVGAPASGPGAAGPITESSGFLAYYEIC 283
Query: 1997 DKIQKDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 2056
++ G + R + +++ PYA KG+QWVG+DD + K +F+K +LGGAMIW++D+D
Sbjct: 284 QFLK--GAKITRLQDQQV-PYAVKGNQWVGYDDVKSMETKVQFLKNLNLGGAMIWSIDMD 340
Query: 2057 DFKN-FCGCESYPLLKTINRVL 2077
DF C YPL++ + R L
Sbjct: 341 DFTGKSCNQGPYPLVQAVKRSL 362
Score = 207 bits (528), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 218/443 (49%), Gaps = 93/443 (20%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFY 443
K+VCY TNWS R+ GKF PENID LC+H++Y+FAS++ N + I+ + + Y
Sbjct: 3 KLVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFASIENNKVIIKDKS-----EVMLY 57
Query: 444 QRISSSPLVTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGL 503
Q I+S + K+KIL++IGG+ S + + ++ S ++R +FI S++ FLR +F GL
Sbjct: 58 QTINSLK-TKNPKLKILLSIGGYLFGS-KGFHPMVDSSTSRLEFINSIILFLRNHNFDGL 115
Query: 504 HFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKHDYS--------IAVGISGYKE 555
W YP + + +F LI EL F K D++ + G+S ++
Sbjct: 116 DVSWIYP----------DQKENTHFTVLIHELAEAFQK-DFTKSTKERLLLTAGVSAGRQ 164
Query: 556 ILEVAYDFPALNDHVEFMSLMSYDYHGAWEG--ITGLVSPLNS--RPGEPYPNYNINTAL 611
+++ +Y L ++F++L+S+D+HG+WE ITG SPL+ + P YN+ A+
Sbjct: 165 MIDNSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSYYNVEYAV 224
Query: 612 KLIDELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEIC 671
G K+V+G+P YG S+TL E +GA GPG AG T+ G LAYYEIC
Sbjct: 225 GYWIHKGMPSEKVVMGIPTYGHSFTLA-SAETTVGAPASGPGAAGPITESSGFLAYYEIC 283
Query: 672 YRIKTRKWTVQRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICY 731
+K K T ++ ++ Y
Sbjct: 284 QFLKGAKITRLQDQ------------------------------------------QVPY 301
Query: 732 RIKTRKWTVQRNTKSLEPFTFQGDQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLDDF 791
+K +W V Y+D S+ KV+F+K+ G M W+ID+DDF
Sbjct: 302 AVKGNQW-------------------VGYDDVKSMETKVQFLKNLNLGGAMIWSIDMDDF 342
Query: 792 HNKCCMES-FPLLRAVNRAFGRL 813
K C + +PL++AV R+ G L
Sbjct: 343 TGKSCNQGPYPLVQAVKRSLGSL 365
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 196/380 (51%), Gaps = 35/380 (9%)
Query: 13 HQVVCYVEAKSAYRHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 72
+++VCY S R P F +N+ P C+H+IY++A+I+ ++ +I + E +
Sbjct: 2 YKLVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFASIEN-NKVIIKDKSEVML---- 56
Query: 73 YKSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLD 126
Y++ LK NP+LK+ L++ F + SRL FI+S++ + FDGLD
Sbjct: 57 YQTINSLKTKNPKLKILLSIGGYLFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDGLD 116
Query: 127 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLT----LTSPGVIDRKT 182
++ P E + F+ I EL+ +++ + T L + GV +
Sbjct: 117 VSWIYPD------------QKENTHFTVLIHELAEAFQKDFTKSTKERLLLTAGVSAGRQ 164
Query: 183 SL---VDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQ-VTSTIANFNNIESAV 238
+ + +A +D I L SF+ ++ + N+ ++ +++ N+E AV
Sbjct: 165 MIDNSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSYYNVEYAV 224
Query: 239 YNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVC 298
WI KG E++++GIP +G S+ L + +E +GA GPG G T+ G+LA++E+C
Sbjct: 225 GYWIHKGMPSEKVVMGIPTYGHSFTLAS-AETTVGAPASGPGAAGPITESSGFLAYYEIC 283
Query: 299 NKFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDF 358
K D P+ VK ++W+ Y++ S+ K+ ++K+ +LGGAM+W++D+DDF
Sbjct: 284 QFLKGAKITRLQDQQ-VPYAVKGNQWVGYDDVKSMETKVQFLKNLNLGGAMIWSIDMDDF 342
Query: 359 RG-FCGQ-KYPLLSAVVSNL 376
G C Q YPL+ AV +L
Sbjct: 343 TGKSCNQGPYPLVQAVKRSL 362
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 145/262 (55%), Gaps = 37/262 (14%)
Query: 1340 FKIVCYFTNWAWYRPGKGKYVLKKV-PWINILKLYVTLQTGLGTDQEKENTFLKISELTY 1398
+K+VCYFTNW+ R GK+ + + P++ +Y + EN + I + +
Sbjct: 2 YKLVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIY--------SFASIENNKVIIKDKS- 52
Query: 1399 VHILFYERVVTLKKKG--VKVSLAIGGWNDSLGGK-YSRLVNSATARQRFIEHVVKFLLK 1455
++ Y+ + +LK K +K+ L+IGG+ G K + +V+S+T+R FI ++ FL
Sbjct: 53 -EVMLYQTINSLKTKNPKLKILLSIGGY--LFGSKGFHPMVDSSTSRLEFINSIILFLRN 109
Query: 1456 YQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKP-------HGLLLSAAV 1508
+ FDGLD+ W YP + F + + EL +AF+ LLL+A V
Sbjct: 110 HNFDGLDVSWIYPD----------QKENTHFTVLIHELAEAFQKDFTKSTKERLLLTAGV 159
Query: 1509 SPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKK--TGHVAPLYEHPDDD--FFYFN 1564
S +Q+I+ +Y V+ L++ LD+I+++++D+HG W+K TGH +PL + D Y+N
Sbjct: 160 SAGRQMIDNSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSYYN 219
Query: 1565 ANFTMNYWMKKGAPSRKLVMGV 1586
+ + YW+ KG PS K+VMG+
Sbjct: 220 VEYAVGYWIHKGMPSEKVVMGI 241
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 83/141 (58%), Gaps = 9/141 (6%)
Query: 2190 YKVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSHNNKLDLEQGF 2249
YK++CY+T+W+ RQ GK++PE+ID LC+HL+Y+FA ++ +++I+ + E
Sbjct: 2 YKLVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFASIENNKVIIKDKS-----EVML 56
Query: 2250 YEKITKFNERG--IQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGL 2307
Y+ I + ++++L+IGG+ S + +V+ +R F+ + FL + F+GL
Sbjct: 57 YQTINSLKTKNPKLKILLSIGGYLFG-SKGFHPMVDSSTSRLEFINSIILFLRNHNFDGL 115
Query: 2308 EFAWEYP-KCWQTCSTVKSHE 2327
+ +W YP + T TV HE
Sbjct: 116 DVSWIYPDQKENTHFTVLIHE 136
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 2317 WQTCSTVKSHEWTVVRDSLGARGPYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWS 2376
++ C +K + T ++D + PYA G W+ YDD + + K + +K LGGAM+WS
Sbjct: 280 YEICQFLKGAKITRLQDQ---QVPYAVKGNQWVGYDDVKSMETKVQFLKNLNLGGAMIWS 336
Query: 2377 IDLDDFQN-LCSCGPYPLLSAVNYEL 2401
ID+DDF C+ GPYPL+ AV L
Sbjct: 337 IDMDDFTGKSCNQGPYPLVQAVKRSL 362
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 870 QVKFIKSNGYAGIMAWTIDLDDFHNKCC 897
+V+F+K+ G M W+ID+DDF K C
Sbjct: 320 KVQFLKNLNLGGAMIWSIDMDDFTGKSC 347
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1 Suggests
A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 251 bits (642), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 141/375 (37%), Positives = 214/375 (57%), Gaps = 25/375 (6%)
Query: 1711 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1770
++++CY+T+WA R G + P +ID LCTH+IY FA + +++ + D +
Sbjct: 1 YQLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQNNEITYT-----HEQDLRD 55
Query: 1771 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1828
YE + LK K +K LAIGGW +S +V++ Q R FI V+ F+ ++NFDGL
Sbjct: 56 YEALNGLKDKNTELKTLLAIGGWKFGPA-PFSAMVSTPQNRQIFIQSVIRFLRQYNFDGL 114
Query: 1829 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHD-------LLLSAAVSPSKAV 1881
+LDW+YP + P DK F+ L+KE+R AF LLL++ + V
Sbjct: 115 NLDWQYPGS-----RGSPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLLTSTGAGIIDV 169
Query: 1882 IDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDT--TPTFNANYSLHYW 1939
I + Y IP +S++LD+I VMTYD H D TG +P+Y P D + N + + YW
Sbjct: 170 IKSGYKIPELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYDIGKSADLNVDSIISYW 229
Query: 1940 VSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKI 1999
HGA +K+I G P YG +F L+D +K G+ + T G+ T G LAYYE+C +
Sbjct: 230 KDHGAASEKLIVGFPAYGHTFILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFL 289
Query: 2000 QKDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFK 2059
+G V D + + PYA++G++WVG+D+ KA+++K N+LGGA++W LD+DDF
Sbjct: 290 N-EGATEVWDAPQEV-PYAYQGNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMDDFS 347
Query: 2060 -NFCGCESYPLLKTI 2073
+FC +PL T+
Sbjct: 348 GSFCHQRHFPLTSTL 362
Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 114/429 (26%), Positives = 195/429 (45%), Gaps = 82/429 (19%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFY 443
+++CY T+W+ R +G F P NID LCTH++YAFA + N ++ E D+ D Y
Sbjct: 2 QLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQNNEITYTH---EQDLRD--Y 56
Query: 444 QRISSSPLVTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGL 503
+ ++ + ++K L+AIGGW +S ++S+ NR+ FI+SV+ FLR+++F GL
Sbjct: 57 EALNGLK-DKNTELKTLLAIGGWKFGPA-PFSAMVSTPQNRQIFIQSVIRFLRQYNFDGL 114
Query: 504 HFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKHDYS-------IAVGISGYKEI 556
+ DW YP DK F L++E++ F++ + +G ++
Sbjct: 115 NLDWQYP-----GSRGSPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLLTSTGAGIIDV 169
Query: 557 LEVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGE--PYPNYNINTALKLI 614
++ Y P L+ ++++ +M+YD H +G TG SPL P + + N+++ +
Sbjct: 170 IKSGYKIPELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYDIGKSADLNVDSIISYW 229
Query: 615 DELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRI 674
+ G K+++G P YG ++ L + G+GA T G G+YT + G+LAYYE+C +
Sbjct: 230 KDHGAASEKLIVGFPAYGHTFILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFL 289
Query: 675 KTRKWTVQRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIK 734
G D P E+ Y +
Sbjct: 290 N--------------------------EGATEVWDAP---------------QEVPYAYQ 308
Query: 735 TRKWTVQRNTKSLEPFTFQGDQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLDDFHNK 794
+W N +S + K +++K N G + W +D+DDF
Sbjct: 309 GNEWVGYDNVRSFK-------------------LKAQWLKDNNLGGAVVWPLDMDDFSGS 349
Query: 795 CCMES-FPL 802
C + FPL
Sbjct: 350 FCHQRHFPL 358
Score = 161 bits (407), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 186/380 (48%), Gaps = 30/380 (7%)
Query: 13 HQVVCYVEAKSAYRHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 72
+Q++CY + + R +F N+ P CTH+IYA+A + E D
Sbjct: 1 YQLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQNNEITYTHEQDLRD----- 55
Query: 73 YKSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLD 126
Y++ GLK+ N ELK LA+ + F ++ S ++R FI SV+ Y FDGL+
Sbjct: 56 YEALNGLKDKNTELKTLLAIGGWKFGPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLN 115
Query: 127 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQ-------LTLTSPGVID 179
L+ + P S ++ FS ++E+ + + LT T G+ID
Sbjct: 116 LDWQYPGSRG-------SPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLLTSTGAGIID 168
Query: 180 RKTSLVDISVVAPLVDLILLKSFN-NDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAV 238
S I ++ +D I + +++ +D D P K + + A+ N ++S +
Sbjct: 169 VIKSGYKIPELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYDIGKS-ADLN-VDSII 226
Query: 239 YNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVC 298
W GA E++I+G P +G ++ L + S+ G+GA G GKYT G LA++EVC
Sbjct: 227 SYWKDHGAASEKLIVGFPAYGHTFILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVC 286
Query: 299 NKFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDF 358
+ + P+ + +EW+ Y+N S + K ++KD +LGGA++W LD+DDF
Sbjct: 287 TFLNEGATEVWDAPQEVPYAYQGNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMDDF 346
Query: 359 RG-FCGQK-YPLLSAVVSNL 376
G FC Q+ +PL S + +L
Sbjct: 347 SGSFCHQRHFPLTSTLKGDL 366
Score = 131 bits (329), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 135/261 (51%), Gaps = 34/261 (13%)
Query: 1340 FKIVCYFTNWAWYRPGKGKYVLKKV-PWINILKLYVTLQTGLGTDQEKENTFLKISELTY 1398
++++CY+T+WA RP +G + + P + +Y ++ +E+TY
Sbjct: 1 YQLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAG-------------MQNNEITY 47
Query: 1399 VH---ILFYERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFL 1453
H + YE + LK K +K LAIGGW +S +V++ RQ FI+ V++FL
Sbjct: 48 THEQDLRDYEALNGLKDKNTELKTLLAIGGWKFG-PAPFSAMVSTPQNRQIFIQSVIRFL 106
Query: 1454 LKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG-------LLLSA 1506
+Y FDGL+LDW+YP P DK F + V+E+ +AF+ LLL++
Sbjct: 107 RQYNFDGLNLDWQYP-----GSRGSPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLLTS 161
Query: 1507 AVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDD--DFFYFN 1564
+ VI + Y + LS+SLD+I VMTYD H D TG +PLY+ P D N
Sbjct: 162 TGAGIIDVIKSGYKIPELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYDIGKSADLN 221
Query: 1565 ANFTMNYWMKKGAPSRKLVMG 1585
+ ++YW GA S KL++G
Sbjct: 222 VDSIISYWKDHGAASEKLIVG 242
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 8/127 (6%)
Query: 2190 YKVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSHNNKLDLEQGF 2249
Y+++CYYTSWA R EG + P +ID LCTHL+YAFA + E+ ++ ++ DL
Sbjct: 1 YQLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQNNEI---TYTHEQDLRD-- 55
Query: 2250 YEKITKFNERG--IQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGL 2307
YE + ++ ++ +LAIGGW + +S +V+ R+ F++ V FL Y F+GL
Sbjct: 56 YEALNGLKDKNTELKTLLAIGGWKFGPA-PFSAMVSTPQNRQIFIQSVIRFLRQYNFDGL 114
Query: 2308 EFAWEYP 2314
W+YP
Sbjct: 115 NLDWQYP 121
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 2340 PYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQ-NLCSCGPYPLLSAVN 2398
PYAY G W+ YD+ R + K + +K + LGGA+VW +D+DDF + C +PL S +
Sbjct: 304 PYAYQGNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMDDFSGSFCHQRHFPLTSTLK 363
Query: 2399 YEL 2401
+L
Sbjct: 364 GDL 366
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 863 NASTSILQVKFIKSNGYAGIMAWTIDLDDFHNKCCMDK 900
N + L+ +++K N G + W +D+DDF C +
Sbjct: 317 NVRSFKLKAQWLKDNNLGGAVVWPLDMDDFSGSFCHQR 354
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 113/417 (27%), Positives = 201/417 (48%), Gaps = 60/417 (14%)
Query: 1713 IVCYFTNWAWYRQSGGKYLPSDIDSDL--CTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1770
+VCY+ + ++ R+ GK L D++ L C+H++YG+A L + L + D+
Sbjct: 4 LVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKHQ 63
Query: 1771 YEKVTALKKK--GVKVTLAIGGWND---SAGNKYSRLVNSQQARS-KFIAHVVNFILEHN 1824
+ +VT+LK+K +KV L++GG +D NKY L+ ++ R FI + +
Sbjct: 64 FSEVTSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTYG 123
Query: 1825 FDGLDLDWEYPK------------CWQV-------DCKQGP--ASDKQGFADLIKELRAA 1863
FDGLDL +++PK W+ D P A K+ F L+++++ +
Sbjct: 124 FDGLDLAYQFPKNKPRKVHGDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVKDS 183
Query: 1864 FNPHDLLLSAAVSPSKAVIDNA--YDIPVMSENLDWISVMTYDY--HGQWDKKTGHVAPM 1919
LLS V P+ +++ +DIP ++ +D++++ T+D+ + ++ + AP+
Sbjct: 184 LRADGFLLSLTVLPN---VNSTWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPI 240
Query: 1920 YALPN---DTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLA-DKNKNGLN--SQ 1973
Y P+ D NA++ + YW+S G K+ G+ YG ++ L D G+ +
Sbjct: 241 YH-PDGSKDRLAHLNADFQVEYWLSQGFPSNKINLGVATYGNAWKLTKDSGLEGVPVVPE 299
Query: 1974 TYGGAEAGENTRARGFLAYYEICDKI----------QKDGWVVVRDRKRRIGPYAFKGDQ 2023
T G A G ++ G L+Y EIC K+ + V D +R G A++
Sbjct: 300 TSGPAPEGFQSQKPGLLSYAEICGKLSNPQNQFLKGNESPLRRVSDPTKRFGGIAYRPVD 359
Query: 2024 -------WVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKNFCGCESYPLLKTI 2073
WV +DD +KA + + +LGG ++ L DDF+ C + YP+L+ I
Sbjct: 360 GQITEGIWVSYDDPDSASNKAAYARVKNLGGVALFDLSYDDFRGQCSGDKYPILRAI 416
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 108/423 (25%), Positives = 175/423 (41%), Gaps = 75/423 (17%)
Query: 15 VVCYVEAKSAYRHRPATFNVKN--VIPQTCTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 72
+VCY ++ S R + + Q C+H++Y YA + + + D+ K
Sbjct: 4 LVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKHQ 63
Query: 73 YKSFLGLKEANPELKVYLAVKSN----------FVSITSDRESR-LNFISSVLEMFDMYK 121
+ LK P LKV L+V + ++ + + R + FI S E+ Y
Sbjct: 64 FSEVTSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTYG 123
Query: 122 FDGLDLNVKDPA-----LNXXXXXXLESI--------------ANERSDFSTFIQELSST 162
FDGLDL + P ++ +SI A + F+ ++++ +
Sbjct: 124 FDGLDLAYQFPKNKPRKVHGDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVKDS 183
Query: 163 LRRNNYQLTLTS-PGVIDRKTSLVDISVVAPLVDLILLKSFN------NDHMDDEVVPVK 215
LR + + L+LT P V T DI + LVD + L +F+ N D P+
Sbjct: 184 LRADGFLLSLTVLPNV--NSTWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPIY 241
Query: 216 PNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGL-GA 274
++ A+F V W+ +G +I +G+ +G +++L S GL G
Sbjct: 242 HPDGSKDRLAHLNADFQ-----VEYWLSQGFPSNKINLGVATYGNAWKLTKDS--GLEGV 294
Query: 275 TV----KGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGEPFMVKKDE------- 323
V GP EG +Q PG L++ E+C K + F N P D
Sbjct: 295 PVVPETSGPAPEGFQSQKPGLLSYAEICGKLSNPQ-NQFLKGNESPLRRVSDPTKRFGGI 353
Query: 324 -------------WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGFC-GQKYPLL 369
W++Y++ DS K Y + ++LGG L+ L DDFRG C G KYP+L
Sbjct: 354 AYRPVDGQITEGIWVSYDDPDSASNKAAYARVKNLGGVALFDLSYDDFRGQCSGDKYPIL 413
Query: 370 SAV 372
A+
Sbjct: 414 RAI 416
Score = 100 bits (250), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 107/470 (22%), Positives = 197/470 (41%), Gaps = 105/470 (22%)
Query: 385 VVCYVTNWSGSRKSDGKFVPENIDYKL--CTHIVYAFASLDPNTLSIQAGNPEADIDDNF 442
+VCY + S +R+ GK + +++ L C+H+VY +A L L + N DI +
Sbjct: 4 LVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKHQ 63
Query: 443 YQRISSSPLVTHGKVKILIAIGGWTDSSGE---KYSQLISSGSNRK-KFIKSVLTFLRRF 498
+ ++S + +K+L+++GG D + KY L+ R+ FI+S ++ +
Sbjct: 64 FSEVTSLKR-KYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTY 122
Query: 499 DFAGLHFDWNYP------------VCWQADCSKQHKAD----------KGNFVKLIQELK 536
F GL + +P + W++ K D K F L++++K
Sbjct: 123 GFDGLDLAYQFPKNKPRKVHGDLGLAWKS-IKKLFTGDFIVDPHAALHKEQFTALVRDVK 181
Query: 537 AEFDKHDYSIAVGISGYKEILEVAY-DFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLN 595
+ +++ + + Y D PALN V+F++L ++D+ ++P
Sbjct: 182 DSLRADGFLLSLTV--LPNVNSTWYFDIPALNGLVDFVNLATFDF----------LTPAR 229
Query: 596 SRPGEPY--PNYNINTALKLIDELGGD------------KRKIVIGVPFYGQSYTLKLDK 641
+ Y P Y+ + + + L D KI +GV YG ++ KL K
Sbjct: 230 NPEEADYSAPIYHPDGSKDRLAHLNADFQVEYWLSQGFPSNKINLGVATYGNAW--KLTK 287
Query: 642 EHGLGA-----ETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPRSMGTL 696
+ GL ET GP G +Q+PG+L+Y EIC ++ + + +S R
Sbjct: 288 DSGLEGVPVVPETSGPAPEGFQSQKPGLLSYAEICGKLSNPQNQFLKGNESPLRR----- 342
Query: 697 KLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQGDQ 756
+ T++ G +AY + +I T+ +
Sbjct: 343 -----------------VSDPTKRFGGIAYRPVDGQI----------TEGI--------- 366
Query: 757 WVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLDDFHNKCCMESFPLLRAV 806
WVSY+DP S + K + + G+ + + DDF +C + +P+LRA+
Sbjct: 367 WVSYDDPDSASNKAAYARVKNLGGVALFDLSYDDFRGQCSGDKYPILRAI 416
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 137/280 (48%), Gaps = 42/280 (15%)
Query: 1342 IVCYFTNWAWYRPGKGKYVLKKVPWINI-LKLYVTLQTGLGTDQEKENTFLKISELTYVH 1400
+VCY+ + ++ R G GK + P + I L+ L G + + ++E ++
Sbjct: 4 LVCYYDSSSYTREGLGKLL---NPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIY 60
Query: 1401 ILFYERVVTLKKK--GVKVSLAIGGWND---SLGGKYSRLVNSATARQ-RFIEHVVKFLL 1454
+ V +LK+K +KV L++GG +D KY L+ RQ FI + +
Sbjct: 61 KHQFSEVTSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVK 120
Query: 1455 KYQFDGLDLDWEYP--TCWQVNCDAG-----------------PDS--DKESFGLFVREL 1493
Y FDGLDL +++P +V+ D G P + KE F VR++
Sbjct: 121 TYGFDGLDLAYQFPKNKPRKVHGDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDV 180
Query: 1494 HQAFKPHGLLLSAAVSPSKQVINAA--YDVKALSESLDWISVMTYDY--HGQWDKKTGHV 1549
+ + G LLS V P+ +N+ +D+ AL+ +D++++ T+D+ + ++ +
Sbjct: 181 KDSLRADGFLLSLTVLPN---VNSTWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYS 237
Query: 1550 APLYEHPD---DDFFYFNANFTMNYWMKKGAPSRKLVMGV 1586
AP+Y HPD D + NA+F + YW+ +G PS K+ +GV
Sbjct: 238 APIY-HPDGSKDRLAHLNADFQVEYWLSQGFPSNKINLGV 276
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 75/132 (56%), Gaps = 8/132 (6%)
Query: 2192 VICYYTSWAYLRQAEGKYSPEDIDGSL--CTHLVYAFADLDEQELVIRSHNNKLDLEQGF 2249
++CYY S +Y R+ GK D++ +L C+HLVY +A L + L S N LD+ +
Sbjct: 4 LVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKHQ 63
Query: 2250 YEKITKFNER--GIQVILAIGGWSDSRSD---KYSRLVNDIPARR-NFVRHVTEFLEFYG 2303
+ ++T + ++V+L++GG D D KY L+ R+ F+R E ++ YG
Sbjct: 64 FSEVTSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTYG 123
Query: 2304 FNGLEFAWEYPK 2315
F+GL+ A+++PK
Sbjct: 124 FDGLDLAYQFPK 135
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 2347 LWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQNLCSCGPYPLLSAVNYEL 2401
+W+SYDD K + LGG ++ + DDF+ CS YP+L A+ Y L
Sbjct: 366 IWVSYDDPDSASNKAAYARVKNLGGVALFDLSYDDFRGQCSGDKYPILRAIKYRL 420
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 137 bits (346), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 109/411 (26%), Positives = 179/411 (43%), Gaps = 67/411 (16%)
Query: 1709 DEFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVL------------------ 1750
D +KIV Y+ +WA Y G Y +DID TH+ Y FA +
Sbjct: 10 DSYKIVGYYPSWAAY---GRNYNVADIDPTKVTHINYAFADICWNGIHGNPDPSGPNPVT 66
Query: 1751 -----DTDQLVIKPH------DTWADLDNKF------------YEKVTALKKKG--VKVT 1785
+ Q + P+ D W D F ++ LK+ +K
Sbjct: 67 WTCQNEKSQTINVPNGTIVLGDPWIDTGKTFAGDTWDQPIAGNINQLNKLKQTNPNLKTI 126
Query: 1786 LAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQG 1845
+++GGW S N++S + + R F V+F+ ++NFDG+DLDWEYP +D
Sbjct: 127 ISVGGWTWS--NRFSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEYPVSGGLDGNSK 184
Query: 1846 PASDKQGFADLIKELR------AAFNPHDLLLSAAVSPSKAVIDNAYDIPVMSENLDWIS 1899
DKQ + L+ ++R A + LL+ A S N ++ ++ +DWI+
Sbjct: 185 RPEDKQNYTLLLSKIREKLDAAGAVDGKKYLLTIASGASATYAANT-ELAKIAAIVDWIN 243
Query: 1900 VMTYDYHGQWDKKTGHVAPMYALPNDTTP------TFNANYSLHYWVSHGADRKKVIFGM 1953
+MTYD++G W K + H AP+ P + TFN + G K++ G+
Sbjct: 244 IMTYDFNGAWQKISAHNAPLNYDPAASAAGVPDANTFNVAAGAQGHLDAGVPAAKLVLGV 303
Query: 1954 PMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEI-CDKIQKDGWVVVRDRKR 2012
P YG+ + + NG GG+ G T G +Y++ + I K+G+ +
Sbjct: 304 PFYGRGWDGCAQAGNGQYQTCTGGSSVG--TWEAGSFDFYDLEANYINKNGYTRYWNDTA 361
Query: 2013 RIGPYAFKGD--QWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKNF 2061
++ PY + +++ +DD + +K ++K LGGAM W L D K
Sbjct: 362 KV-PYLYNASNKRFISYDDAESVGYKTAYIKSKGLGGAMFWELSGDRNKTL 411
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 112/477 (23%), Positives = 190/477 (39%), Gaps = 134/477 (28%)
Query: 376 LQPEEPEP----KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASL--------- 422
LQP E K+V Y +W+ ++ + +ID THI YAFA +
Sbjct: 1 LQPATAEAADSYKIVGYYPSWAAYGRN---YNVADIDPTKVTHINYAFADICWNGIHGNP 57
Query: 423 ---DPNTLS-----------------IQAGNPEADIDDNFYQRISSSPLV---------- 452
PN ++ I G+P D F P+
Sbjct: 58 DPSGPNPVTWTCQNEKSQTINVPNGTIVLGDPWIDTGKTFAGDTWDQPIAGNINQLNKLK 117
Query: 453 -THGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPV 511
T+ +K +I++GGWT S+ ++S + ++ + R+ F S + FLR+++F G+ DW YPV
Sbjct: 118 QTNPNLKTIISVGGWTWSN--RFSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEYPV 175
Query: 512 CWQADCSKQHKADKGNFVKLIQELKAEFDKHDYSIAVGISGYKEILEVAYDFPA------ 565
D + + DK N+ L+ +++ + D A + G K +L +A A
Sbjct: 176 SGGLDGNSKRPEDKQNYTLLLSKIREKLDA-----AGAVDGKKYLLTIASGASATYAANT 230
Query: 566 ----LNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRP-----GEPYPN-YNINTALKLID 615
+ V+++++M+YD++GAW+ I+ +PLN P G P N +N+ +
Sbjct: 231 ELAKIAAIVDWINIMTYDFNGAWQKISAHNAPLNYDPAASAAGVPDANTFNVAAGAQGHL 290
Query: 616 ELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIK 675
+ G K+V+GVPFYG+ + DG AG Y+ C
Sbjct: 291 DAGVPAAKLVLGVPFYGRGW--------------DGCAQAGN--------GQYQTC---- 324
Query: 676 TRKWTVQRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEI-CYRIK 734
S+GT + G +Y++ I
Sbjct: 325 ------------TGGSSVGTW-----------------------EAGSFDFYDLEANYIN 349
Query: 735 TRKWTVQRNTKSLEPFTFQGD--QWVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLD 789
+T N + P+ + +++SY+D S+ K +IKS G G M W + D
Sbjct: 350 KNGYTRYWNDTAKVPYLYNASNKRFISYDDAESVGYKTAYIKSKGLGGAMFWELSGD 406
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 14/206 (6%)
Query: 1415 VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVN 1474
+K +++GGW + ++S + +A R+ F V FL KY FDG+DLDWEYP ++
Sbjct: 123 LKTIISVGGW--TWSNRFSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEYPVSGGLD 180
Query: 1475 CDAGPDSDKESFGLFVRELHQAFKPHGLL-----LSAAVSPSKQVINAAYDVKALSESLD 1529
++ DK+++ L + ++ + G + L S + A ++ ++ +D
Sbjct: 181 GNSKRPEDKQNYTLLLSKIREKLDAAGAVDGKKYLLTIASGASATYAANTELAKIAAIVD 240
Query: 1530 WISVMTYDYHGQWDKKTGHVAPLYEHPDD------DFFYFNANFTMNYWMKKGAPSRKLV 1583
WI++MTYD++G W K + H APL P D FN + G P+ KLV
Sbjct: 241 WINIMTYDFNGAWQKISAHNAPLNYDPAASAAGVPDANTFNVAAGAQGHLDAGVPAAKLV 300
Query: 1584 MGVHPLLSTITEVLGHGPGGNYESTT 1609
+GV P + G Y++ T
Sbjct: 301 LGV-PFYGRGWDGCAQAGNGQYQTCT 325
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 83/405 (20%), Positives = 169/405 (41%), Gaps = 71/405 (17%)
Query: 13 HQVVCYVEAKSAYRHRPATFNVKNVIPQTCTHVIYAYAAI--------------DPVSRA 58
+++V Y + +AY +NV ++ P TH+ YA+A I +PV+
Sbjct: 12 YKIVGYYPSWAAYGRN---YNVADIDPTKVTHINYAFADICWNGIHGNPDPSGPNPVTWT 68
Query: 59 LIPEDLEYDVIKGGY-----------KSFLG----------------LKEANPELKVYLA 91
E + + G K+F G LK+ NP LK ++
Sbjct: 69 CQNEKSQTINVPNGTIVLGDPWIDTGKTFAGDTWDQPIAGNINQLNKLKQTNPNLKTIIS 128
Query: 92 V-----KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNXXXXXXLESIA 146
V + F + + +R F +S ++ Y FDG+DL+ + P
Sbjct: 129 VGGWTWSNRFSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEYPVSGGLDGNSKRP-- 186
Query: 147 NERSDFSTFIQEL------SSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLK 200
++ +++ + ++ + + Y LT+ S G + +++ +A +VD I +
Sbjct: 187 EDKQNYTLLLSKIREKLDAAGAVDGKKYLLTIAS-GASATYAANTELAKIAAIVDWINIM 245
Query: 201 SFNNDHMDDEVVPVKPNTKVNIQVTSTIA-----NFNNIESAVYNWIKKGARPEQIIIGI 255
+++ + ++ N +N ++ A N N+ + + G ++++G+
Sbjct: 246 TYDFNGAWQKIS--AHNAPLNYDPAASAAGVPDANTFNVAAGAQGHLDAGVPAAKLVLGV 303
Query: 256 PFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTW--RHFTDSN 313
PF+G+ + ++ G T G + G T G F+++ + +K R++ D+
Sbjct: 304 PFYGRGWDGCAQAGNGQYQTCTGGSSVG--TWEAGSFDFYDLEANYINKNGYTRYWNDTA 361
Query: 314 GEPFM--VKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLD 356
P++ +I+Y++ +S+ K YIK + LGGAM W L D
Sbjct: 362 KVPYLYNASNKRFISYDDAESVGYKTAYIKSKGLGGAMFWELSGD 406
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 48/178 (26%)
Query: 2180 QQEQIRYAEPYKVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADL---------- 2229
Q A+ YK++ YY SWA + Y+ DID + TH+ YAFAD+
Sbjct: 2 QPATAEAADSYKIVGYYPSWAAYGR---NYNVADIDPTKVTHINYAFADICWNGIHGNPD 58
Query: 2230 ------------DEQELVIRSHNNKLDL----------------EQGFYEKITKFNER-- 2259
+E+ I N + L +Q I + N+
Sbjct: 59 PSGPNPVTWTCQNEKSQTINVPNGTIVLGDPWIDTGKTFAGDTWDQPIAGNINQLNKLKQ 118
Query: 2260 ---GIQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGLEFAWEYP 2314
++ I+++GGW+ S+++S + R F +FL Y F+G++ WEYP
Sbjct: 119 TNPNLKTIISVGGWT--WSNRFSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEYP 174
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 2337 ARGPYAYNG--KLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQNL 2385
A+ PY YN K ++SYDD + K IK GLGGAM W + D + L
Sbjct: 361 AKVPYLYNASNKRFISYDDAESVGYKTAYIKSKGLGGAMFWELSGDRNKTL 411
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 131 bits (330), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 100/348 (28%), Positives = 159/348 (45%), Gaps = 37/348 (10%)
Query: 1722 WYRQSGGKYLPSDIDSDLCTHVIYGFAVLD--TDQLVIKPHDTWADLDNKFYEKVTALKK 1779
W++ SG ++IDS L TH+ FA L+ +QL+I P + + F + + +++
Sbjct: 9 WFKDSG--LALNNIDSTLFTHLFCAFADLNPQLNQLIISPEN-----QDSFRQFTSTVQR 61
Query: 1780 K--GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKC 1837
K VK L+I G + Y + +R FI + + F GLDLDWEYP
Sbjct: 62 KNPSVKTFLSIAG-GRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYPLS 120
Query: 1838 WQVDCKQGPASDKQGFADLIKELRAAFNPHD-------LLLSAAVSPSKAVIDNAYDIPV 1890
A+D L+ E R A N LLL+AAVS S V Y +
Sbjct: 121 ---------AADMTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVES 171
Query: 1891 MSENLDWISVMTYDYHG-QWD-KKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKK 1948
++ NLDWI++M YD++G W +T A ++ D + + ++ W+ G KK
Sbjct: 172 LARNLDWINLMAYDFYGPNWSPSQTNSHAQLF----DPVNHVSGSDGINAWIQAGVPTKK 227
Query: 1949 VIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVR 2008
++ G+P YG ++ L + N +GL + G + G G + Y I D I + V
Sbjct: 228 LVLGIPFYGYAWRLVNANIHGLRAPAAGKSNVG--AVDDGSMTYNRIRDYIVESRATTVY 285
Query: 2009 DRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 2056
+ +G Y + G W+ +DD + +K +VK L G W + D
Sbjct: 286 N-ATIVGDYCYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGD 332
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 96/407 (23%), Positives = 154/407 (37%), Gaps = 102/407 (25%)
Query: 399 DGKFVPENIDYKLCTHIVYAFASLDP--NTLSIQAGNPEADIDDNFYQRISSSPLVTHGK 456
D NID L TH+ AFA L+P N L I N ++ +++ +S+ +
Sbjct: 12 DSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDS------FRQFTSTVQRKNPS 65
Query: 457 VKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQAD 516
VK ++I G +S Y + ++RK FI S + R+ F GL DW YP+
Sbjct: 66 VKTFLSIAGGRANS-TAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYPLS---- 120
Query: 517 CSKQHKADKGNFVKLIQELKAEFD-------KHDYSIAVGISGYKEILEVAYDFPALNDH 569
AD N L+ E + + + + +S + + Y +L +
Sbjct: 121 -----AADMTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLARN 175
Query: 570 VEFMSLMSYDYHGA-WE-----GITGLVSPLNSRPGEPYPNYNINTALKLIDELGGDKRK 623
+++++LM+YD++G W L P+N G N I + G +K
Sbjct: 176 LDWINLMAYDFYGPNWSPSQTNSHAQLFDPVNHVSGSDGINAWI--------QAGVPTKK 227
Query: 624 IVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEIC-YRIKTRKWTVQ 682
+V+G+PFYG ++ L HGL A G G G + Y I Y +++R TV
Sbjct: 228 LVLGIPFYGYAWRLVNANIHGLRAPAAGKSNVGAV--DDGSMTYNRIRDYIVESRATTVY 285
Query: 683 RNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQR 742
T + G+Y CY
Sbjct: 286 NAT---------------------------IVGDY------------CY----------- 295
Query: 743 NTKSLEPFTFQGDQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLD 789
G W+SY+D ++ KV ++K G G AW + D
Sbjct: 296 ----------SGSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGD 332
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 96/194 (49%), Gaps = 27/194 (13%)
Query: 1404 YERVVTLKKKGVKVSLAIGGW--NDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGL 1461
+ V K VK L+I G N + G +R NS R+ FI+ ++ + F GL
Sbjct: 55 FTSTVQRKNPSVKTFLSIAGGRANSTAYGIMARQPNS---RKSFIDSSIRLARQLGFHGL 111
Query: 1462 DLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG-------LLLSAAVSPSKQV 1514
DLDWEYP +D + G + E A LLL+AAVS S +V
Sbjct: 112 DLDWEYPLS---------AADMTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRV 162
Query: 1515 INAAYDVKALSESLDWISVMTYDYHG-QWD-KKTGHVAPLYEHPDDDFFYFNANFTMNYW 1572
Y V++L+ +LDWI++M YD++G W +T A L+ D + + + +N W
Sbjct: 163 NGLNYPVESLARNLDWINLMAYDFYGPNWSPSQTNSHAQLF----DPVNHVSGSDGINAW 218
Query: 1573 MKKGAPSRKLVMGV 1586
++ G P++KLV+G+
Sbjct: 219 IQAGVPTKKLVLGI 232
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/358 (22%), Positives = 153/358 (42%), Gaps = 41/358 (11%)
Query: 22 KSAYRHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALI--PEDLEYDVIKGGYKSFLG- 78
K Y + + + N+ TH+ A+A ++P LI PE+ + ++ F
Sbjct: 5 KGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQD------SFRQFTST 58
Query: 79 LKEANPELKVYLAVKSNFVSITS------DRESRLNFISSVLEMFDMYKFDGLDLNVKDP 132
++ NP +K +L++ + T+ SR +FI S + + F GLDL+ + P
Sbjct: 59 VQRKNPSVKTFLSIAGGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYP 118
Query: 133 ALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSL----VDIS 188
L+ L ++ NE + T I +T RN+ + L + + +
Sbjct: 119 -LSAADMTNLGTLLNE---WRTAI----NTEARNSGRAALLLTAAVSNSPRVNGLNYPVE 170
Query: 189 VVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNI-QVTSTIANFNNIESAVYNWIKKGAR 247
+A +D I L ++ D P + N+ + + ++ + I + WI+ G
Sbjct: 171 SLARNLDWINLMAY--DFYGPNWSPSQTNSHAQLFDPVNHVSGSDGINA----WIQAGVP 224
Query: 248 PEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWR 307
+++++GIPF+G ++RL N + +GL A G G G + + + + + R
Sbjct: 225 TKKLVLGIPFYGYAWRLVNANIHGLRAPAAGKSNVGAVDD--GSMTYNRIRDYIVES--R 280
Query: 308 HFTDSNGE---PFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGFC 362
T N + WI+Y++ ++R K+NY+K R L G W + D G
Sbjct: 281 ATTVYNATIVGDYCYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLS 338
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 2212 EDIDGSLCTHLVYAFADLDEQ--ELVIRSHNNKLDLEQGFYEKITKFNERGIQVILAIGG 2269
+ID +L THL AFADL+ Q +L+I N D + F + + N ++ L+I G
Sbjct: 18 NNIDSTLFTHLFCAFADLNPQLNQLIISPENQ--DSFRQFTSTVQRKNP-SVKTFLSIAG 74
Query: 2270 WSDSRSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGLEFAWEYP 2314
+ S Y + +R++F+ GF+GL+ WEYP
Sbjct: 75 -GRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYP 118
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 2339 GPYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLD 2380
G Y Y+G W+SYDDT+ +R K +K GL G W + D
Sbjct: 291 GDYCYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGD 332
>pdb|3AQU|A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|B Chain B, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|C Chain C, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|D Chain D, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
Length = 356
Score = 131 bits (329), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 156/337 (46%), Gaps = 36/337 (10%)
Query: 1733 SDIDSDLCTHVIYGFAVLD--TDQLVIKPHDTWADLDNKF--YEKVTALKKKGVKVTLAI 1788
+DIDS L TH+ FA L+ T+Q+ + + KF + + + VK L+I
Sbjct: 19 TDIDSSLFTHLFCAFADLNSQTNQVTVSSAN-----QPKFSTFTQTVQRRNPSVKTLLSI 73
Query: 1789 GGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPAS 1848
GG + Y+ + ++ +R FI + + F GLDLDWEYP A+
Sbjct: 74 GG-GIADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPSS---------AT 123
Query: 1849 DKQGFADLIKELRAAFNPHD-------LLLSAAVSPSKAVIDNAYDIPVMSENLDWISVM 1901
+ F L++E R+A LLL+AAV S Y + ++ +LDW+++M
Sbjct: 124 EMTNFGTLLREWRSAVVAEASSSGKPRLLLAAAVFYSNNYYSVLYPVSAVASSLDWVNLM 183
Query: 1902 TYDYHG-QWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSF 1960
YD++G W + TG A ++ P++ P+ +A W+ G KK + G P YG ++
Sbjct: 184 AYDFYGPGWSRVTGPPAALFD-PSNAGPSGDAG--TRSWIQAGLPAKKAVLGFPYYGYAW 240
Query: 1961 TLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK 2020
L + N + + T G A + + G + Y +I I +G V + +G Y +
Sbjct: 241 RLTNANSHSYYAPTTGAAISPD-----GSIGYGQIRKFIVDNGATTVYN-STVVGDYCYA 294
Query: 2021 GDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDD 2057
G W+G+DD I K + K L G W + DD
Sbjct: 295 GTNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADD 331
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 23/191 (12%)
Query: 1404 YERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDL 1463
+ + V + VK L+IGG + Y+ + ++ T+R+ FI+ ++ Y F GLDL
Sbjct: 56 FTQTVQRRNPSVKTLLSIGG-GIADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDL 114
Query: 1464 DWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAF--------KPHGLLLSAAVSPSKQVI 1515
DWEYP+ ++ +FG +RE A KP LLL+AAV S
Sbjct: 115 DWEYPSS---------ATEMTNFGTLLREWRSAVVAEASSSGKPR-LLLAAAVFYSNNYY 164
Query: 1516 NAAYDVKALSESLDWISVMTYDYHG-QWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMK 1574
+ Y V A++ SLDW+++M YD++G W + TG A L++ + + + W++
Sbjct: 165 SVLYPVSAVASSLDWVNLMAYDFYGPGWSRVTGPPAALFDPSNAG---PSGDAGTRSWIQ 221
Query: 1575 KGAPSRKLVMG 1585
G P++K V+G
Sbjct: 222 AGLPAKKAVLG 232
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 90/402 (22%), Positives = 152/402 (37%), Gaps = 97/402 (24%)
Query: 401 KFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFYQRISSSPLVTHGKVKIL 460
+F +ID L TH+ AFA L+ T + + F Q + + VK L
Sbjct: 15 EFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSANQPKFSTFTQTVQRR----NPSVKTL 70
Query: 461 IAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQADCSKQ 520
++IGG + Y+ + S+ ++RK FI S + R + F GL DW YP
Sbjct: 71 LSIGGGI-ADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYP---------S 120
Query: 521 HKADKGNFVKLIQELKAEFDKHDYS-------IAVGISGYKEILEVAYDFPALNDHVEFM 573
+ NF L++E ++ S +A + V Y A+ ++++
Sbjct: 121 SATEMTNFGTLLREWRSAVVAEASSSGKPRLLLAAAVFYSNNYYSVLYPVSAVASSLDWV 180
Query: 574 SLMSYDYHG-AWEGITG----LVSPLNSRPGEPYPNYNINTALKLIDELGGDKRKIVIGV 628
+LM+YD++G W +TG L P N+ P + + + G +K V+G
Sbjct: 181 NLMAYDFYGPGWSRVTGPPAALFDPSNAGPSG-------DAGTRSWIQAGLPAKKAVLGF 233
Query: 629 PFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSL 688
P+YG ++ L H A T G ++ + G + Y +I RK+ V ++
Sbjct: 234 PYYGYAWRLTNANSHSYYAPTTGAAISPD-----GSIGYGQI------RKFIVDNGATTV 282
Query: 689 EPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLE 748
+ + G+Y CY
Sbjct: 283 YNST--------------------VVGDY------------CY----------------- 293
Query: 749 PFTFQGDQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLDD 790
G W+ Y+D S+ KV++ K G G +W + DD
Sbjct: 294 ----AGTNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADD 331
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 81/373 (21%), Positives = 152/373 (40%), Gaps = 41/373 (10%)
Query: 22 KSAYRHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALIPEDLEYDVIKGGYKSFL-GLK 80
K++Y + F V ++ TH+ A+A ++ + + + + +F ++
Sbjct: 6 KASYWFPASEFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSAN----QPKFSTFTQTVQ 61
Query: 81 EANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPAL 134
NP +K L++ K+ + S+ S+ SR +FI S + + Y F GLDL+ + P
Sbjct: 62 RRNPSVKTLLSIGGGIADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYP-- 119
Query: 135 NXXXXXXLESIANERSDFSTFIQELSSTL----RRNNYQLTLTSPGVI---DRKTSLVDI 187
S A E ++F T ++E S + + L + V + + L +
Sbjct: 120 ---------SSATEMTNFGTLLREWRSAVVAEASSSGKPRLLLAAAVFYSNNYYSVLYPV 170
Query: 188 SVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGAR 247
S VA +D + L +++ V P + ++ +WI+ G
Sbjct: 171 SAVASSLDWVNLMAYDFYGPGWSRVTGPPAALFDPSNAGPSG-----DAGTRSWIQAGLP 225
Query: 248 PEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWR 307
++ ++G P++G ++RL N + + A G + G + F V N T
Sbjct: 226 AKKAVLGFPYYGYAWRLTNANSHSYYAPTTGAAISPDGSIGYGQIRKFIVDN---GATTV 282
Query: 308 HFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGF---CGQ 364
+ + G+ + WI Y++N SI K+ Y K R L G W + DD G Q
Sbjct: 283 YNSTVVGD-YCYAGTNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGLSRAASQ 341
Query: 365 KYPLLSAVVSNLQ 377
+ +A +Q
Sbjct: 342 AWDATTATTRTIQ 354
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Query: 2213 DIDGSLCTHLVYAFADLDEQELVIRSHNNKLDLEQGFYEKITKFNERGIQVILAIGGWSD 2272
DID SL THL AFADL+ Q + + F + + + N ++ +L+IGG
Sbjct: 20 DIDSSLFTHLFCAFADLNSQTNQVTVSSANQPKFSTFTQTVQRRNPS-VKTLLSIGGGIA 78
Query: 2273 SRSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGLEFAWEYPKC 2316
++ Y+ + ++ +R++F+ YGF+GL+ WEYP
Sbjct: 79 DKT-AYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPSS 121
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 23/48 (47%)
Query: 2339 GPYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQNLC 2386
G Y Y G W+ YDD + I K + KQ GL G W + DD L
Sbjct: 289 GDYCYAGTNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGLS 336
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 130 bits (327), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 159/348 (45%), Gaps = 37/348 (10%)
Query: 1722 WYRQSGGKYLPSDIDSDLCTHVIYGFAVLD--TDQLVIKPHDTWADLDNKFYEKVTALKK 1779
W++ SG ++IDS L TH+ FA L+ +QL+I P + + F + + +++
Sbjct: 9 WFKDSG--LALNNIDSTLFTHLFCAFADLNPQLNQLIISPEN-----QDSFRQFTSTVQR 61
Query: 1780 K--GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKC 1837
K VK L+I G + Y + +R FI + + F GLDLDW+YP
Sbjct: 62 KNPSVKTFLSIAG-GRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWQYPLS 120
Query: 1838 WQVDCKQGPASDKQGFADLIKELRAAFNPHD-------LLLSAAVSPSKAVIDNAYDIPV 1890
A+D L+ E R A N LLL+AAVS S V Y +
Sbjct: 121 ---------AADMTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVES 171
Query: 1891 MSENLDWISVMTYDYHG-QWD-KKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKK 1948
++ NLDWI++M YD++G W +T A ++ D + + ++ W+ G KK
Sbjct: 172 LARNLDWINLMAYDFYGPNWSPSQTNSHAQLF----DPVNHVSGSDGINAWIQAGVPTKK 227
Query: 1949 VIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVR 2008
++ G+P YG ++ L + N +GL + G + G G + Y I D I + V
Sbjct: 228 LVLGIPFYGYAWRLVNANIHGLRAPAAGKSNVG--AVDDGSMTYNRIRDYIVESRATTVY 285
Query: 2009 DRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 2056
+ +G Y + G W+ +DD + +K +VK L G W + D
Sbjct: 286 N-ATIVGDYCYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGD 332
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 96/407 (23%), Positives = 154/407 (37%), Gaps = 102/407 (25%)
Query: 399 DGKFVPENIDYKLCTHIVYAFASLDP--NTLSIQAGNPEADIDDNFYQRISSSPLVTHGK 456
D NID L TH+ AFA L+P N L I N ++ +++ +S+ +
Sbjct: 12 DSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDS------FRQFTSTVQRKNPS 65
Query: 457 VKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQAD 516
VK ++I G +S Y + ++RK FI S + R+ F GL DW YP+
Sbjct: 66 VKTFLSIAGGRANS-TAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWQYPLS---- 120
Query: 517 CSKQHKADKGNFVKLIQELKAEFD-------KHDYSIAVGISGYKEILEVAYDFPALNDH 569
AD N L+ E + + + + +S + + Y +L +
Sbjct: 121 -----AADMTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLARN 175
Query: 570 VEFMSLMSYDYHGA-WE-----GITGLVSPLNSRPGEPYPNYNINTALKLIDELGGDKRK 623
+++++LM+YD++G W L P+N G N I + G +K
Sbjct: 176 LDWINLMAYDFYGPNWSPSQTNSHAQLFDPVNHVSGSDGINAWI--------QAGVPTKK 227
Query: 624 IVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEIC-YRIKTRKWTVQ 682
+V+G+PFYG ++ L HGL A G G G + Y I Y +++R TV
Sbjct: 228 LVLGIPFYGYAWRLVNANIHGLRAPAAGKSNVGAV--DDGSMTYNRIRDYIVESRATTVY 285
Query: 683 RNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQR 742
T + G+Y CY
Sbjct: 286 NAT---------------------------IVGDY------------CY----------- 295
Query: 743 NTKSLEPFTFQGDQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLD 789
G W+SY+D ++ KV ++K G G AW + D
Sbjct: 296 ----------SGSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGD 332
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 27/194 (13%)
Query: 1404 YERVVTLKKKGVKVSLAIGGW--NDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGL 1461
+ V K VK L+I G N + G +R NS R+ FI+ ++ + F GL
Sbjct: 55 FTSTVQRKNPSVKTFLSIAGGRANSTAYGIMARQPNS---RKSFIDSSIRLARQLGFHGL 111
Query: 1462 DLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG-------LLLSAAVSPSKQV 1514
DLDW+YP +D + G + E A LLL+AAVS S +V
Sbjct: 112 DLDWQYPLS---------AADMTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRV 162
Query: 1515 INAAYDVKALSESLDWISVMTYDYHG-QWD-KKTGHVAPLYEHPDDDFFYFNANFTMNYW 1572
Y V++L+ +LDWI++M YD++G W +T A L+ D + + + +N W
Sbjct: 163 NGLNYPVESLARNLDWINLMAYDFYGPNWSPSQTNSHAQLF----DPVNHVSGSDGINAW 218
Query: 1573 MKKGAPSRKLVMGV 1586
++ G P++KLV+G+
Sbjct: 219 IQAGVPTKKLVLGI 232
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/360 (22%), Positives = 153/360 (42%), Gaps = 41/360 (11%)
Query: 20 EAKSAYRHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALI--PEDLEYDVIKGGYKSFL 77
K Y + + + N+ TH+ A+A ++P LI PE+ + ++ F
Sbjct: 3 NVKGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQD------SFRQFT 56
Query: 78 G-LKEANPELKVYLAVKSNFVSITS------DRESRLNFISSVLEMFDMYKFDGLDLNVK 130
++ NP +K +L++ + T+ SR +FI S + + F GLDL+ +
Sbjct: 57 STVQRKNPSVKTFLSIAGGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWQ 116
Query: 131 DPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSL----VD 186
P L+ L ++ NE + T I +T RN+ + L + +
Sbjct: 117 YP-LSAADMTNLGTLLNE---WRTAI----NTEARNSGRAALLLTAAVSNSPRVNGLNYP 168
Query: 187 ISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNI-QVTSTIANFNNIESAVYNWIKKG 245
+ +A +D I L ++ D P + N+ + + ++ + I + WI+ G
Sbjct: 169 VESLARNLDWINLMAY--DFYGPNWSPSQTNSHAQLFDPVNHVSGSDGINA----WIQAG 222
Query: 246 ARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKT 305
+++++GIPF+G ++RL N + +GL A G G G + + + + +
Sbjct: 223 VPTKKLVLGIPFYGYAWRLVNANIHGLRAPAAGKSNVGAVDD--GSMTYNRIRDYIVES- 279
Query: 306 WRHFTDSNGE---PFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGFC 362
R T N + WI+Y++ ++R K+NY+K R L G W + D G
Sbjct: 280 -RATTVYNATIVGDYCYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLS 338
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 2212 EDIDGSLCTHLVYAFADLDEQ--ELVIRSHNNKLDLEQGFYEKITKFNERGIQVILAIGG 2269
+ID +L THL AFADL+ Q +L+I N D + F + + N ++ L+I G
Sbjct: 18 NNIDSTLFTHLFCAFADLNPQLNQLIISPENQ--DSFRQFTSTVQRKNP-SVKTFLSIAG 74
Query: 2270 WSDSRSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGLEFAWEYP 2314
+ S Y + +R++F+ GF+GL+ W+YP
Sbjct: 75 -GRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWQYP 118
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 2339 GPYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLD 2380
G Y Y+G W+SYDDT+ +R K +K GL G W + D
Sbjct: 291 GDYCYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGD 332
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution
pdb|1LL4|A Chain A, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|B Chain B, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|C Chain C, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|D Chain D, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
Length = 392
Score = 127 bits (318), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 172/379 (45%), Gaps = 58/379 (15%)
Query: 1711 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVL-------------DTDQLVI 1757
F+ V YF NWA Y G + P D+ +D TH++Y FA + DTD+
Sbjct: 3 FRSVVYFVNWAIY---GRGHNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHY- 58
Query: 1758 KPHDTWADLDNKFY---EKVTALKK--KGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKF 1812
P D W + N Y +++ LKK + +K L+IGGW S + ++++ R KF
Sbjct: 59 -PGDKWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTYSP--NFKTPASTEEGRKKF 115
Query: 1813 IAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF-------- 1864
+ + + FDG+D+DWEYP+ D KQ A+D F L+K R A
Sbjct: 116 ADTSLKLMKDLGFDGIDIDWEYPE----DEKQ--AND---FVLLLKACREALDAYSAKHP 166
Query: 1865 NPHDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPN 1924
N LL+ A SP+ N + M + LD+ ++M YD+ G WDK +GH++ ++ P+
Sbjct: 167 NGKKFLLTIA-SPAGPQNYNKLKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVF--PS 223
Query: 1925 DTTPT---FNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAG 1981
T P F+++ ++ ++ G K++ GMP+YG++F D N G E G
Sbjct: 224 TTKPESTPFSSDKAVKDYIKAGVPANKIVLGMPLYGRAFASTDGIGTSFNGVGGGSWENG 283
Query: 1982 ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVK 2041
++ D Q+ V + Y + +D + KAE++
Sbjct: 284 ----------VWDYKDMPQQGAQVTELEDIAASYSYDKNKRYLISYDTVKIAGKKAEYIT 333
Query: 2042 YNDLGGAMIWALDLDDFKN 2060
N +GG M W D N
Sbjct: 334 KNGMGGGMWWESSSDKTGN 352
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 137/297 (46%), Gaps = 51/297 (17%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADID---- 439
+ V Y NW+ + P+++ THI+YAFA++ P+ + + AD D
Sbjct: 4 RSVVYFVNWAIYGRGHN---PQDLKADQFTHILYAFANIRPSG-EVYLSDTWADTDKHYP 59
Query: 440 --------DNFYQRISSSPLV--THGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIK 489
+N Y I L+ + +K L++IGGWT S + S+ RKKF
Sbjct: 60 GDKWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTYSP--NFKTPASTEEGRKKFAD 117
Query: 490 SVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKHDYSIAVG 549
+ L ++ F G+ DW YP + + +FV L++ + D + A
Sbjct: 118 TSLKLMKDLGFDGIDIDWEYP---------EDEKQANDFVLLLKACREALDAYS---AKH 165
Query: 550 ISGYKEILEVA----------YDFPALNDHVEFMSLMSYDYHGAWEGITGLVS---PLNS 596
+G K +L +A ++ +++F +LM+YD+ G+W+ ++G +S P +
Sbjct: 166 PNGKKFLLTIASPAGPQNYNKLKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPSTT 225
Query: 597 RPGEPYPNYNINTALKLIDELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPG 653
+P E P ++ + A+K + G KIV+G+P YG+++ G+G +G G
Sbjct: 226 KP-ESTP-FSSDKAVKDYIKAGVPANKIVLGMPLYGRAFA----STDGIGTSFNGVG 276
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 131/300 (43%), Gaps = 40/300 (13%)
Query: 1340 FKIVCYFTNWAWYRPGKGKYVLKKVPWINILKLYVTLQ-------TGLGTDQEKENTFLK 1392
F+ V YF NWA Y G LK + +IL + ++ + D +K K
Sbjct: 3 FRSVVYFVNWAIYGRGHNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPGDK 62
Query: 1393 ISELTYVHILFYERVVTLKK--KGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVV 1450
E +++ LKK + +K L+IGGW S + ++ R++F + +
Sbjct: 63 WDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTYSP--NFKTPASTEEGRKKFADTSL 120
Query: 1451 KFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAF------KPHG--L 1502
K + FDG+D+DWEYP + F L ++ +A P+G
Sbjct: 121 KLMKDLGFDGIDIDWEYPE---------DEKQANDFVLLLKACREALDAYSAKHPNGKKF 171
Query: 1503 LLSAAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVA---PLYEHPDDD 1559
LL+ A Q N + + + LD+ ++M YD+ G WDK +GH++ P P+
Sbjct: 172 LLTIASPAGPQNYN-KLKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPSTTKPEST 230
Query: 1560 FFYFNANFTMNYWMKKGAPSRKLVMGVHPLLSTITEVLGHGP------GGNYESTTEEYK 1613
F+++ + ++K G P+ K+V+G+ G G GG++E+ +YK
Sbjct: 231 --PFSSDKAVKDYIKAGVPANKIVLGMPLYGRAFASTDGIGTSFNGVGGGSWENGVWDYK 288
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 25/144 (17%)
Query: 2190 YKVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSH---------- 2239
++ + Y+ +WA + ++P+D+ TH++YAFA++ V S
Sbjct: 3 FRSVVYFVNWAIYGRG---HNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYP 59
Query: 2240 --------NNKLDLEQGFYEKITKFNERGIQVILAIGGWSDSRSDKYSRLVNDIPARRNF 2291
NN + Y + K N R ++ +L+IGGW+ S + + R+ F
Sbjct: 60 GDKWDEPGNNVYGCIKQMY--LLKKNNRNLKTLLSIGGWT--YSPNFKTPASTEEGRKKF 115
Query: 2292 VRHVTEFLEFYGFNGLEFAWEYPK 2315
+ ++ GF+G++ WEYP+
Sbjct: 116 ADTSLKLMKDLGFDGIDIDWEYPE 139
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/344 (21%), Positives = 132/344 (38%), Gaps = 45/344 (13%)
Query: 33 NVKNVIPQTCTHVIYAYAAIDPVSRALIPE--------------DLEYDVIKGGYKSFLG 78
N +++ TH++YA+A I P + + D + + G K
Sbjct: 20 NPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPGDKWDEPGNNVYGCIKQMYL 79
Query: 79 LKEANPELKVYLAVKS-----NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPA 133
LK+ N LK L++ NF + S E R F + L++ FDG+D++ + P
Sbjct: 80 LKKNNRNLKTLLSIGGWTYSPNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDIDWEYPE 139
Query: 134 LNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPL 193
+ + R + + + + + LT+ SP L ++ +
Sbjct: 140 DEKQANDFVLLLKACREALDAYSAKHPNGKK---FLLTIASPAGPQNYNKL-KLAEMDKY 195
Query: 194 VDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIII 253
+D L +++ D+V N V T + + + AV ++IK G +I++
Sbjct: 196 LDFWNLMAYDFSGSWDKVSGHMSN--VFPSTTKPESTPFSSDKAVKDYIKAGVPANKIVL 253
Query: 254 GIPFFGKSYRLFNRSEYGLGATVKGPGTEG------KYTQMPGYLAFFEVCNKFKDKTWR 307
G+P +G+++ S G+G + G G Y MP A + +D
Sbjct: 254 GMPLYGRAF----ASTDGIGTSFNGVGGGSWENGVWDYKDMPQQGA---QVTELEDIAAS 306
Query: 308 HFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLW 351
+ D N K I+Y+ +K YI +GG M W
Sbjct: 307 YSYDKN-------KRYLISYDTVKIAGKKAEYITKNGMGGGMWW 343
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 2311 WEYPKCWQTCSTVKSHEWTVVRDSLGARGPYAYNGKLWLSYDDTRDIRRKCKSIKQDGLG 2370
W+Y Q + V E + A Y N + +SYD + +K + I ++G+G
Sbjct: 285 WDYKDMPQQGAQVTELE------DIAASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMG 338
Query: 2371 GAMVWSIDLDDFQNLCSCG 2389
G M W D N G
Sbjct: 339 GGMWWESSSDKTGNESLVG 357
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
pdb|1LL7|B Chain B, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 172/379 (45%), Gaps = 58/379 (15%)
Query: 1711 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVL-------------DTDQLVI 1757
F+ V YF NWA Y G + P D+ +D TH++Y FA + DTD+
Sbjct: 3 FRSVVYFVNWAIY---GRGHNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHY- 58
Query: 1758 KPHDTWADLDNKFY---EKVTALKK--KGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKF 1812
P D W + N Y +++ LKK + +K L+IGGW S + ++++ R KF
Sbjct: 59 -PGDKWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTYSP--NFKTPASTEEGRKKF 115
Query: 1813 IAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF-------- 1864
+ + + FDG+D+DW+YP+ D KQ A+D F L+K R A
Sbjct: 116 ADTSLKLMKDLGFDGIDIDWQYPE----DEKQ--AND---FVLLLKACREALDAYSAKHP 166
Query: 1865 NPHDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPN 1924
N LL+ A SP+ N + M + LD+ ++M YD+ G WDK +GH++ ++ P+
Sbjct: 167 NGKKFLLTIA-SPAGPQNYNKLKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVF--PS 223
Query: 1925 DTTPT---FNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAG 1981
T P F+++ ++ ++ G K++ GMP+YG++F D N G E G
Sbjct: 224 TTKPESTPFSSDKAVKDYIKAGVPANKIVLGMPLYGRAFASTDGIGTSFNGVGGGSWENG 283
Query: 1982 ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVK 2041
++ D Q+ V + Y + +D + KAE++
Sbjct: 284 ----------VWDYKDMPQQGAQVTELEDIAASYSYDKNKRYLISYDTVKIAGKKAEYIT 333
Query: 2042 YNDLGGAMIWALDLDDFKN 2060
N +GG M W D N
Sbjct: 334 KNGMGGGMWWESSSDKTGN 352
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 137/297 (46%), Gaps = 51/297 (17%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADID---- 439
+ V Y NW+ + P+++ THI+YAFA++ P+ + + AD D
Sbjct: 4 RSVVYFVNWAIYGRGHN---PQDLKADQFTHILYAFANIRPSG-EVYLSDTWADTDKHYP 59
Query: 440 --------DNFYQRISSSPLV--THGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIK 489
+N Y I L+ + +K L++IGGWT S + S+ RKKF
Sbjct: 60 GDKWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTYSP--NFKTPASTEEGRKKFAD 117
Query: 490 SVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKHDYSIAVG 549
+ L ++ F G+ DW YP + + +FV L++ + D + A
Sbjct: 118 TSLKLMKDLGFDGIDIDWQYP---------EDEKQANDFVLLLKACREALDAYS---AKH 165
Query: 550 ISGYKEILEVA----------YDFPALNDHVEFMSLMSYDYHGAWEGITGLVS---PLNS 596
+G K +L +A ++ +++F +LM+YD+ G+W+ ++G +S P +
Sbjct: 166 PNGKKFLLTIASPAGPQNYNKLKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPSTT 225
Query: 597 RPGEPYPNYNINTALKLIDELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPG 653
+P E P ++ + A+K + G KIV+G+P YG+++ G+G +G G
Sbjct: 226 KP-ESTP-FSSDKAVKDYIKAGVPANKIVLGMPLYGRAFA----STDGIGTSFNGVG 276
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 131/300 (43%), Gaps = 40/300 (13%)
Query: 1340 FKIVCYFTNWAWYRPGKGKYVLKKVPWINILKLYVTLQ-------TGLGTDQEKENTFLK 1392
F+ V YF NWA Y G LK + +IL + ++ + D +K K
Sbjct: 3 FRSVVYFVNWAIYGRGHNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPGDK 62
Query: 1393 ISELTYVHILFYERVVTLKK--KGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVV 1450
E +++ LKK + +K L+IGGW S + ++ R++F + +
Sbjct: 63 WDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTYSP--NFKTPASTEEGRKKFADTSL 120
Query: 1451 KFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAF------KPHG--L 1502
K + FDG+D+DW+YP + F L ++ +A P+G
Sbjct: 121 KLMKDLGFDGIDIDWQYPE---------DEKQANDFVLLLKACREALDAYSAKHPNGKKF 171
Query: 1503 LLSAAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVA---PLYEHPDDD 1559
LL+ A Q N + + + LD+ ++M YD+ G WDK +GH++ P P+
Sbjct: 172 LLTIASPAGPQNYNK-LKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPSTTKPEST 230
Query: 1560 FFYFNANFTMNYWMKKGAPSRKLVMGVHPLLSTITEVLGHGP------GGNYESTTEEYK 1613
F+++ + ++K G P+ K+V+G+ G G GG++E+ +YK
Sbjct: 231 --PFSSDKAVKDYIKAGVPANKIVLGMPLYGRAFASTDGIGTSFNGVGGGSWENGVWDYK 288
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/344 (21%), Positives = 132/344 (38%), Gaps = 45/344 (13%)
Query: 33 NVKNVIPQTCTHVIYAYAAIDPVSRALIPE--------------DLEYDVIKGGYKSFLG 78
N +++ TH++YA+A I P + + D + + G K
Sbjct: 20 NPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPGDKWDEPGNNVYGCIKQMYL 79
Query: 79 LKEANPELKVYLAVKS-----NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPA 133
LK+ N LK L++ NF + S E R F + L++ FDG+D++ + P
Sbjct: 80 LKKNNRNLKTLLSIGGWTYSPNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDIDWQYPE 139
Query: 134 LNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPL 193
+ + R + + + + + LT+ SP L ++ +
Sbjct: 140 DEKQANDFVLLLKACREALDAYSAKHPNGKK---FLLTIASPAGPQNYNKL-KLAEMDKY 195
Query: 194 VDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIII 253
+D L +++ D+V N V T + + + AV ++IK G +I++
Sbjct: 196 LDFWNLMAYDFSGSWDKVSGHMSN--VFPSTTKPESTPFSSDKAVKDYIKAGVPANKIVL 253
Query: 254 GIPFFGKSYRLFNRSEYGLGATVKGPGTEG------KYTQMPGYLAFFEVCNKFKDKTWR 307
G+P +G+++ S G+G + G G Y MP A + +D
Sbjct: 254 GMPLYGRAF----ASTDGIGTSFNGVGGGSWENGVWDYKDMPQQGA---QVTELEDIAAS 306
Query: 308 HFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLW 351
+ D N K I+Y+ +K YI +GG M W
Sbjct: 307 YSYDKN-------KRYLISYDTVKIAGKKAEYITKNGMGGGMWW 343
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 25/144 (17%)
Query: 2190 YKVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSH---------- 2239
++ + Y+ +WA + ++P+D+ TH++YAFA++ V S
Sbjct: 3 FRSVVYFVNWAIYGRG---HNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYP 59
Query: 2240 --------NNKLDLEQGFYEKITKFNERGIQVILAIGGWSDSRSDKYSRLVNDIPARRNF 2291
NN + Y + K N R ++ +L+IGGW + S + + R+ F
Sbjct: 60 GDKWDEPGNNVYGCIKQMY--LLKKNNRNLKTLLSIGGW--TYSPNFKTPASTEEGRKKF 115
Query: 2292 VRHVTEFLEFYGFNGLEFAWEYPK 2315
+ ++ GF+G++ W+YP+
Sbjct: 116 ADTSLKLMKDLGFDGIDIDWQYPE 139
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 2311 WEYPKCWQTCSTVKSHEWTVVRDSLGARGPYAYNGKLWLSYDDTRDIRRKCKSIKQDGLG 2370
W+Y Q + V E + A Y N + +SYD + +K + I ++G+G
Sbjct: 285 WDYKDMPQQGAQVTELE------DIAASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMG 338
Query: 2371 GAMVWSIDLDDFQNLCSCG 2389
G M W D N G
Sbjct: 339 GGMWWESSSDKTGNESLVG 357
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|B Chain B, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|C Chain C, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|D Chain D, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 172/379 (45%), Gaps = 58/379 (15%)
Query: 1711 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVL-------------DTDQLVI 1757
F+ V YF NWA Y G + P D+ +D TH++Y FA + DTD+
Sbjct: 3 FRSVVYFVNWAIY---GRGHNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHY- 58
Query: 1758 KPHDTWADLDNKFY---EKVTALKK--KGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKF 1812
P D W + N Y +++ LKK + +K L+IGGW S + ++++ R KF
Sbjct: 59 -PGDKWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTYSP--NFKTPASTEEGRKKF 115
Query: 1813 IAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF-------- 1864
+ + + FDG+D++WEYP+ D KQ A+D F L+K R A
Sbjct: 116 ADTSLKLMKDLGFDGIDINWEYPE----DEKQ--AND---FVLLLKACREALDAYSAKHP 166
Query: 1865 NPHDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPN 1924
N LL+ A SP+ N + M + LD+ ++M YD+ G WDK +GH++ ++ P+
Sbjct: 167 NGKKFLLTIA-SPAGPQNYNKLKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVF--PS 223
Query: 1925 DTTPT---FNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAG 1981
T P F+++ ++ ++ G K++ GMP+YG++F D N G E G
Sbjct: 224 TTKPESTPFSSDKAVKDYIKAGVPANKIVLGMPLYGRAFASTDGIGTSFNGVGGGSWENG 283
Query: 1982 ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVK 2041
++ D Q+ V + Y + +D + KAE++
Sbjct: 284 ----------VWDYKDMPQQGAQVTELEDIAASYSYDKNKRYLISYDTVKIAGKKAEYIT 333
Query: 2042 YNDLGGAMIWALDLDDFKN 2060
N +GG M W D N
Sbjct: 334 KNGMGGGMWWESSSDKTGN 352
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 137/297 (46%), Gaps = 51/297 (17%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADID---- 439
+ V Y NW+ + P+++ THI+YAFA++ P+ + + AD D
Sbjct: 4 RSVVYFVNWAIYGRGHN---PQDLKADQFTHILYAFANIRPSG-EVYLSDTWADTDKHYP 59
Query: 440 --------DNFYQRISSSPLV--THGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIK 489
+N Y I L+ + +K L++IGGWT S + S+ RKKF
Sbjct: 60 GDKWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTYSP--NFKTPASTEEGRKKFAD 117
Query: 490 SVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKHDYSIAVG 549
+ L ++ F G+ +W YP + + +FV L++ + D + A
Sbjct: 118 TSLKLMKDLGFDGIDINWEYP---------EDEKQANDFVLLLKACREALDAYS---AKH 165
Query: 550 ISGYKEILEVA----------YDFPALNDHVEFMSLMSYDYHGAWEGITGLVS---PLNS 596
+G K +L +A ++ +++F +LM+YD+ G+W+ ++G +S P +
Sbjct: 166 PNGKKFLLTIASPAGPQNYNKLKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPSTT 225
Query: 597 RPGEPYPNYNINTALKLIDELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPG 653
+P E P ++ + A+K + G KIV+G+P YG+++ G+G +G G
Sbjct: 226 KP-ESTP-FSSDKAVKDYIKAGVPANKIVLGMPLYGRAFA----STDGIGTSFNGVG 276
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 131/300 (43%), Gaps = 40/300 (13%)
Query: 1340 FKIVCYFTNWAWYRPGKGKYVLKKVPWINILKLYVTLQ-------TGLGTDQEKENTFLK 1392
F+ V YF NWA Y G LK + +IL + ++ + D +K K
Sbjct: 3 FRSVVYFVNWAIYGRGHNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPGDK 62
Query: 1393 ISELTYVHILFYERVVTLKK--KGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVV 1450
E +++ LKK + +K L+IGGW S + ++ R++F + +
Sbjct: 63 WDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTYSP--NFKTPASTEEGRKKFADTSL 120
Query: 1451 KFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAF------KPHG--L 1502
K + FDG+D++WEYP + F L ++ +A P+G
Sbjct: 121 KLMKDLGFDGIDINWEYPE---------DEKQANDFVLLLKACREALDAYSAKHPNGKKF 171
Query: 1503 LLSAAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVA---PLYEHPDDD 1559
LL+ A Q N + + + LD+ ++M YD+ G WDK +GH++ P P+
Sbjct: 172 LLTIASPAGPQNYNK-LKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPSTTKPEST 230
Query: 1560 FFYFNANFTMNYWMKKGAPSRKLVMGVHPLLSTITEVLGHGP------GGNYESTTEEYK 1613
F+++ + ++K G P+ K+V+G+ G G GG++E+ +YK
Sbjct: 231 --PFSSDKAVKDYIKAGVPANKIVLGMPLYGRAFASTDGIGTSFNGVGGGSWENGVWDYK 288
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/344 (21%), Positives = 132/344 (38%), Gaps = 45/344 (13%)
Query: 33 NVKNVIPQTCTHVIYAYAAIDPVSRALIPE--------------DLEYDVIKGGYKSFLG 78
N +++ TH++YA+A I P + + D + + G K
Sbjct: 20 NPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPGDKWDEPGNNVYGCIKQMYL 79
Query: 79 LKEANPELKVYLAVKS-----NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPA 133
LK+ N LK L++ NF + S E R F + L++ FDG+D+N + P
Sbjct: 80 LKKNNRNLKTLLSIGGWTYSPNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDINWEYPE 139
Query: 134 LNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPL 193
+ + R + + + + + LT+ SP L ++ +
Sbjct: 140 DEKQANDFVLLLKACREALDAYSAKHPNGKK---FLLTIASPAGPQNYNKL-KLAEMDKY 195
Query: 194 VDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIII 253
+D L +++ D+V N V T + + + AV ++IK G +I++
Sbjct: 196 LDFWNLMAYDFSGSWDKVSGHMSN--VFPSTTKPESTPFSSDKAVKDYIKAGVPANKIVL 253
Query: 254 GIPFFGKSYRLFNRSEYGLGATVKGPGTEG------KYTQMPGYLAFFEVCNKFKDKTWR 307
G+P +G+++ S G+G + G G Y MP A + +D
Sbjct: 254 GMPLYGRAF----ASTDGIGTSFNGVGGGSWENGVWDYKDMPQQGA---QVTELEDIAAS 306
Query: 308 HFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLW 351
+ D N K I+Y+ +K YI +GG M W
Sbjct: 307 YSYDKN-------KRYLISYDTVKIAGKKAEYITKNGMGGGMWW 343
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 25/144 (17%)
Query: 2190 YKVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSH---------- 2239
++ + Y+ +WA + ++P+D+ TH++YAFA++ V S
Sbjct: 3 FRSVVYFVNWAIYGRG---HNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYP 59
Query: 2240 --------NNKLDLEQGFYEKITKFNERGIQVILAIGGWSDSRSDKYSRLVNDIPARRNF 2291
NN + Y + K N R ++ +L+IGGW+ S + + R+ F
Sbjct: 60 GDKWDEPGNNVYGCIKQMY--LLKKNNRNLKTLLSIGGWT--YSPNFKTPASTEEGRKKF 115
Query: 2292 VRHVTEFLEFYGFNGLEFAWEYPK 2315
+ ++ GF+G++ WEYP+
Sbjct: 116 ADTSLKLMKDLGFDGIDINWEYPE 139
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 2311 WEYPKCWQTCSTVKSHEWTVVRDSLGARGPYAYNGKLWLSYDDTRDIRRKCKSIKQDGLG 2370
W+Y Q + V E + A Y N + +SYD + +K + I ++G+G
Sbjct: 285 WDYKDMPQQGAQVTELE------DIAASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMG 338
Query: 2371 GAMVWSIDLDDFQNLCSCG 2389
G M W D N G
Sbjct: 339 GGMWWESSSDKTGNESLVG 357
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With A
Potent Inhibitor Caffeine
Length = 406
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/371 (25%), Positives = 158/371 (42%), Gaps = 56/371 (15%)
Query: 1714 VCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLV--------IKPH---DT 1762
YFTNW Y G + P+D+ + HV+Y F L D V ++ H D+
Sbjct: 24 AVYFTNWGIY---GRNFQPADLQASKILHVLYSFMNLRVDGTVYSGDTYADLEKHYSDDS 80
Query: 1763 WADLDNKFYEKVTALKK-----KGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVV 1817
W D+ Y V L K + +K+ L+IGGW S + +++ R+ F V
Sbjct: 81 WNDIGTNAYGCVKQLYKLKKANRSLKIMLSIGGWTWS--TNFPAAASTEATRATFAKTAV 138
Query: 1818 NFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHD--------- 1868
F+ + FDG+D+DWEYP +D L++ +R + +
Sbjct: 139 EFMKDWGFDGIDVDWEYPAS---------ETDANNMVLLLQRVRQELDSYSATYANGYHF 189
Query: 1869 -LLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMY-ALPNDT 1926
L ++A PS N + + LD I++M YDY G WD +GH +Y + N +
Sbjct: 190 QLSIAAPAGPSHY---NVLKLAQLGSVLDNINLMAYDYAGSWDSVSGHQTNLYPSTSNPS 246
Query: 1927 TPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRA 1986
+ F+ ++ +++ G K+I GMP+YG++F D ++ G E+G
Sbjct: 247 STPFSTKAAVDAYIAAGVPASKIILGMPIYGRAFVGTDGPGKPYSTIGEGSWESG----- 301
Query: 1987 RGFLAYYEICDKIQKDGWVVVRDRKRRIG-PYAFKGDQWVGFDDQAMIHHKAEFVKYNDL 2045
+ Y++ + K G V+ D Y + +D M+ K + K L
Sbjct: 302 ---IWDYKV---LPKAGATVITDSAAGATYSYDSSSRTMISYDTPDMVRTKVSYAKGLGL 355
Query: 2046 GGAMIWALDLD 2056
GG+M W D
Sbjct: 356 GGSMFWEASAD 366
Score = 87.4 bits (215), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 130/293 (44%), Gaps = 54/293 (18%)
Query: 386 VCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADID----DN 441
Y TNW + F P ++ H++Y+F +L + ++ +G+ AD++ D+
Sbjct: 24 AVYFTNWGIYGR---NFQPADLQASKILHVLYSFMNLRVDG-TVYSGDTYADLEKHYSDD 79
Query: 442 FYQRISSSPL----------VTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSV 491
+ I ++ + +KI+++IGGWT S+ + S+ + R F K+
Sbjct: 80 SWNDIGTNAYGCVKQLYKLKKANRSLKIMLSIGGWTWST--NFPAAASTEATRATFAKTA 137
Query: 492 LTFLRRFDFAGLHFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKHDYSIAVGIS 551
+ F++ + F G+ DW YP + D N V L+Q ++ E D + + A +
Sbjct: 138 VEFMKDWGFDGIDVDWEYPAS---------ETDANNMVLLLQRVRQELDSYSATYA---N 185
Query: 552 GYKEILEVA----------YDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEP 601
GY L +A L ++ ++LM+YDY G+W+ ++G + L P
Sbjct: 186 GYHFQLSIAAPAGPSHYNVLKLAQLGSVLDNINLMAYDYAGSWDSVSGHQTNLYPSTSNP 245
Query: 602 YPN-YNINTALKLIDELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPG 653
++ A+ G KI++G+P YG+++ TDGPG
Sbjct: 246 SSTPFSTKAAVDAYIAAGVPASKIILGMPIYGRAFV-----------GTDGPG 287
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 128/292 (43%), Gaps = 44/292 (15%)
Query: 1343 VCYFTNWAWYRPGKGKYVLKKVPWINILKLYVTLQTGLGT--------DQEK---ENTFL 1391
YFTNW Y L+ +++L ++ L+ GT D EK ++++
Sbjct: 24 AVYFTNWGIYGRNFQPADLQASKILHVLYSFMNLRVD-GTVYSGDTYADLEKHYSDDSWN 82
Query: 1392 KISELTYVHILFYERVVTLKK--KGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHV 1449
I Y + +++ LKK + +K+ L+IGGW S + ++ R F +
Sbjct: 83 DIGTNAYGCV---KQLYKLKKANRSLKIMLSIGGWTWST--NFPAAASTEATRATFAKTA 137
Query: 1450 VKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG-------- 1501
V+F+ + FDG+D+DWEYP ++D + L ++ + Q +
Sbjct: 138 VEFMKDWGFDGIDVDWEYPAS---------ETDANNMVLLLQRVRQELDSYSATYANGYH 188
Query: 1502 --LLLSAAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDD- 1558
L ++A PS + + L LD I++M YDY G WD +GH LY +
Sbjct: 189 FQLSIAAPAGPSHYNV---LKLAQLGSVLDNINLMAYDYAGSWDSVSGHQTNLYPSTSNP 245
Query: 1559 DFFYFNANFTMNYWMKKGAPSRKLVMGVHPLLSTITEVLGHGPGGNYESTTE 1610
F+ ++ ++ G P+ K+++G+ P+ V GPG Y + E
Sbjct: 246 SSTPFSTKAAVDAYIAAGVPASKIILGM-PIYGR-AFVGTDGPGKPYSTIGE 295
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 125/295 (42%), Gaps = 27/295 (9%)
Query: 71 GGYKSFLGLKEANPELKVYLAV-----KSNFVSITSDRESRLNFISSVLEMFDMYKFDGL 125
G K LK+AN LK+ L++ +NF + S +R F + +E + FDG+
Sbjct: 90 GCVKQLYKLKKANRSLKIMLSIGGWTWSTNFPAAASTEATRATFAKTAVEFMKDWGFDGI 149
Query: 126 DLNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSLV 185
D++ + PA + + R + ++ ++ ++QL++ +P +++
Sbjct: 150 DVDWEYPASETDANNMVLLLQRVRQELDSYSATYANGY---HFQLSIAAPAGPSHY-NVL 205
Query: 186 DISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKG 245
++ + ++D I L +++ D V + N + S+ + ++AV +I G
Sbjct: 206 KLAQLGSVLDNINLMAYDYAGSWDSVSGHQTNLYPSTSNPSSTPF--STKAAVDAYIAAG 263
Query: 246 ARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPG----TEGKYTQMPGYLAFFEVCNKF 301
+II+G+P +G+++ GPG T G+ + G + ++V K
Sbjct: 264 VPASKIILGMPIYGRAF-----------VGTDGPGKPYSTIGEGSWESG-IWDYKVLPKA 311
Query: 302 KDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLD 356
+ I+Y+ D +R K++Y K LGG+M W D
Sbjct: 312 GATVITDSAAGATYSYDSSSRTMISYDTPDMVRTKVSYAKGLGLGGSMFWEASAD 366
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 25/141 (17%)
Query: 2194 CYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSHNNKLDLEQGFYE-- 2251
Y+T+W + + P D+ S H++Y+F +L + + S + DLE+ + +
Sbjct: 25 VYFTNWGIYGR---NFQPADLQASKILHVLYSFMNL-RVDGTVYSGDTYADLEKHYSDDS 80
Query: 2252 ----------------KITKFNERGIQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRHV 2295
K+ K N R ++++L+IGGW+ S + + R F +
Sbjct: 81 WNDIGTNAYGCVKQLYKLKKAN-RSLKIMLSIGGWT--WSTNFPAAASTEATRATFAKTA 137
Query: 2296 TEFLEFYGFNGLEFAWEYPKC 2316
EF++ +GF+G++ WEYP
Sbjct: 138 VEFMKDWGFDGIDVDWEYPAS 158
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 2329 TVVRDSL-GARGPYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLD 2380
TV+ DS GA Y + + +SYD +R K K GLGG+M W D
Sbjct: 314 TVITDSAAGATYSYDSSSRTMISYDTPDMVRTKVSYAKGLGLGGSMFWEASAD 366
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product Cyclopentapeptide
Inhibitor Argadin Against Aspergillus Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product Cyclopentapeptide
Inhibitor Argadin Against Aspergillus Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 175/377 (46%), Gaps = 71/377 (18%)
Query: 1711 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVL--DTDQLVIK---------- 1758
++ V YF NWA Y G + P D+ + THV+Y FA + +T ++ +
Sbjct: 43 YRSVVYFVNWAIY---GRNHNPQDLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHY 99
Query: 1759 PHDTWADLDNKFY---EKVTALKK--KGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFI 1813
P D+W+D N Y +++ LKK + +KV L+IGGW S ++ ++ R F
Sbjct: 100 PGDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWTYSP--NFAPAASTDAGRKNFA 157
Query: 1814 AHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQG--FADLIKELRAAFNPHD--- 1868
V + + FDGLD+DWEYP+ +D+Q F L+KE+R A + +
Sbjct: 158 KTAVKLLQDLGFDGLDIDWEYPE-----------NDQQANDFVLLLKEVRTALDSYSAAN 206
Query: 1869 -------LLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYA 1921
L +++ P K + + D M + LD+ ++M YDY G + +GH A +Y
Sbjct: 207 AGGQHFLLTVASPAGPDKIKVLHLKD---MDQQLDFWNLMAYDYAGSFSSLSGHQANVY- 262
Query: 1922 LPNDT-----TPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYG 1976
NDT TP FN +L + + G K++ GMP+YG+SF D + Y
Sbjct: 263 --NDTSNPLSTP-FNTQTALDLYRAGGVPANKIVLGMPLYGRSFANTDG-----PGKPYN 314
Query: 1977 GAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKGDQ--WVGFDDQAMIH 2034
G G+ + G Y + + V+ D + Y++ + +D+ + +
Sbjct: 315 G--VGQGSWENGVWDYKALPQAGATEH--VLPD---IMASYSYDATNKFLISYDNPQVAN 367
Query: 2035 HKAEFVKYNDLGGAMIW 2051
K+ ++K LGGAM W
Sbjct: 368 LKSGYIKSLGLGGAMWW 384
Score = 104 bits (259), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 136/295 (46%), Gaps = 53/295 (17%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADID---- 439
+ V Y NW+ ++ P+++ + TH++YAFA++ P T + + ADI+
Sbjct: 44 RSVVYFVNWAIYGRNHN---PQDLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHYP 100
Query: 440 --------DNFYQRISSSPLV--THGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIK 489
+N Y I L+ + +K+L++IGGWT S ++ S+ + RK F K
Sbjct: 101 GDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWTYS--PNFAPAASTDAGRKNFAK 158
Query: 490 SVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKHDYSIAVG 549
+ + L+ F GL DW YP ++ +FV L++E++ D + A
Sbjct: 159 TAVKLLQDLGFDGLDIDWEYP---------ENDQQANDFVLLLKEVRTALDSYS---AAN 206
Query: 550 ISGYKEILEVA----------YDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPG 599
G +L VA ++ ++F +LM+YDY G++ ++G + + +
Sbjct: 207 AGGQHFLLTVASPAGPDKIKVLHLKDMDQQLDFWNLMAYDYAGSFSSLSGHQANVYNDTS 266
Query: 600 EPYPN-YNINTALKLIDELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPG 653
P +N TAL L G KIV+G+P YG+S+ A TDGPG
Sbjct: 267 NPLSTPFNTQTALDLYRAGGVPANKIVLGMPLYGRSF-----------ANTDGPG 310
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 116/269 (43%), Gaps = 37/269 (13%)
Query: 1340 FKIVCYFTNWAWYRPGKGKYVLKKVPWINILKLYVTLQTGLG--------TDQEKE---N 1388
++ V YF NWA Y L ++L + ++ G D EK +
Sbjct: 43 YRSVVYFVNWAIYGRNHNPQDLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHYPGD 102
Query: 1389 TFLKISELTYVHILFYERVVTLKK--KGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFI 1446
++ Y I +++ LKK + +KV L+IGGW S ++ ++ R+ F
Sbjct: 103 SWSDTGNNVYGCI---KQLYLLKKQNRNLKVLLSIGGWTYS--PNFAPAASTDAGRKNFA 157
Query: 1447 EHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG----- 1501
+ VK L FDGLD+DWEYP D F L ++E+ A +
Sbjct: 158 KTAVKLLQDLGFDGLDIDWEYPEN---------DQQANDFVLLLKEVRTALDSYSAANAG 208
Query: 1502 ---LLLSAAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDD 1558
LL+ A SP+ +K + + LD+ ++M YDY G + +GH A +Y +
Sbjct: 209 GQHFLLTVA-SPAGPDKIKVLHLKDMDQQLDFWNLMAYDYAGSFSSLSGHQANVYNDTSN 267
Query: 1559 DFFY-FNANFTMNYWMKKGAPSRKLVMGV 1586
FN ++ + G P+ K+V+G+
Sbjct: 268 PLSTPFNTQTALDLYRAGGVPANKIVLGM 296
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 76/155 (49%), Gaps = 22/155 (14%)
Query: 2178 SNQQEQIRYAEPYKVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIR 2237
S+ + R + Y+ + Y+ +WA + ++P+D+ TH++YAFA++ + +
Sbjct: 31 SSTDLEARASSGYRSVVYFVNWAIYGR---NHNPQDLPVERLTHVLYAFANVRPETGEVY 87
Query: 2238 SHNNKLDLEQGFYEK-----------------ITKFNERGIQVILAIGGWSDSRSDKYSR 2280
++ D+E+ + + K R ++V+L+IGGW+ S ++
Sbjct: 88 MTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWT--YSPNFAP 145
Query: 2281 LVNDIPARRNFVRHVTEFLEFYGFNGLEFAWEYPK 2315
+ R+NF + + L+ GF+GL+ WEYP+
Sbjct: 146 AASTDAGRKNFAKTAVKLLQDLGFDGLDIDWEYPE 180
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 82/374 (21%), Positives = 147/374 (39%), Gaps = 65/374 (17%)
Query: 19 VEAKSAYRHRPATFNV------KNVIPQ-----TCTHVIYAYAAIDPVSRALIPEDLEYD 67
+EA+++ +R + V +N PQ THV+YA+A + P + + D D
Sbjct: 35 LEARASSGYRSVVYFVNWAIYGRNHNPQDLPVERLTHVLYAFANVRPETGEVYMTDSWAD 94
Query: 68 VIK---------------GGYKSFLGLKEANPELKVYLAVKS-----NFVSITSDRESRL 107
+ K G K LK+ N LKV L++ NF S R
Sbjct: 95 IEKHYPGDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWTYSPNFAPAASTDAGRK 154
Query: 108 NFISSVLEMFDMYKFDGLDLNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRR-- 165
NF + +++ FDGLD++ + P + + +DF ++E+ + L
Sbjct: 155 NFAKTAVKLLQDLGFDGLDIDWEYPEND-----------QQANDFVLLLKEVRTALDSYS 203
Query: 166 ------NNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTK 219
++ LT+ SP D K ++ + + +D L ++ D+
Sbjct: 204 AANAGGQHFLLTVASPAGPD-KIKVLHLKDMDQQLDFWNLMAY--DYAGSFSSLSGHQAN 260
Query: 220 VNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGP 279
V ++ ++ N ++A+ + G +I++G+P +G+S+ + +G
Sbjct: 261 VYNDTSNPLSTPFNTQTALDLYRAGGVPANKIVLGMPLYGRSFANTDGPGKPYNGVGQGS 320
Query: 280 GTEG--KYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKM 337
G Y +P A V D + D+ + F+ I+Y+N K
Sbjct: 321 WENGVWDYKALPQAGATEHV---LPDIMASYSYDATNK-FL------ISYDNPQVANLKS 370
Query: 338 NYIKDRHLGGAMLW 351
YIK LGGAM W
Sbjct: 371 GYIKSLGLGGAMWW 384
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 105/377 (27%), Positives = 175/377 (46%), Gaps = 71/377 (18%)
Query: 1711 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVL--DTDQLVIK---------- 1758
++ V YF NWA Y G + P D+ + THV+Y FA + +T ++ +
Sbjct: 5 YRSVVYFVNWAIY---GRNHNPQDLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHY 61
Query: 1759 PHDTWADLDNKFY---EKVTALKK--KGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFI 1813
P D+W+D N Y +++ LKK + +KV L+IGGW S ++ ++ R F
Sbjct: 62 PGDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWTYSP--NFAPAASTDAGRKNFA 119
Query: 1814 AHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQG--FADLIKELRAAFNPHD--- 1868
V + + FDGLD+DWEYP+ +D+Q F L++E+R A + +
Sbjct: 120 KTAVKLLQDLGFDGLDIDWEYPE-----------NDQQANDFVLLLREVRTALDSYSAAN 168
Query: 1869 -------LLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYA 1921
L +++ P K + + D M + LD+ ++M YDY G + +GH A +Y
Sbjct: 169 AGGQHFLLTVASPAGPDKIKVLHLKD---MDQQLDFWNLMAYDYAGSFSSLSGHQANVY- 224
Query: 1922 LPNDT-----TPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYG 1976
NDT TP FN +L + + G K++ GMP+YG+SF D + Y
Sbjct: 225 --NDTSNPLSTP-FNTQTALDLYRAGGVPANKIVLGMPLYGRSFANTDG-----PGKPYN 276
Query: 1977 GAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKGDQ--WVGFDDQAMIH 2034
G G+ + G Y + + V+ D + Y++ + +D+ + +
Sbjct: 277 G--VGQGSWENGVWDYKALPQAGATEH--VLPD---IMASYSYDATNKFLISYDNPQVAN 329
Query: 2035 HKAEFVKYNDLGGAMIW 2051
K+ ++K LGGAM W
Sbjct: 330 LKSGYIKSLGLGGAMWW 346
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 136/295 (46%), Gaps = 53/295 (17%)
Query: 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADID---- 439
+ V Y NW+ ++ P+++ + TH++YAFA++ P T + + ADI+
Sbjct: 6 RSVVYFVNWAIYGRNHN---PQDLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHYP 62
Query: 440 --------DNFYQRISSSPLV--THGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIK 489
+N Y I L+ + +K+L++IGGWT S ++ S+ + RK F K
Sbjct: 63 GDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWTYS--PNFAPAASTDAGRKNFAK 120
Query: 490 SVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKHDYSIAVG 549
+ + L+ F GL DW YP ++ +FV L++E++ D + A
Sbjct: 121 TAVKLLQDLGFDGLDIDWEYP---------ENDQQANDFVLLLREVRTALDSYS---AAN 168
Query: 550 ISGYKEILEVA----------YDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPG 599
G +L VA ++ ++F +LM+YDY G++ ++G + + +
Sbjct: 169 AGGQHFLLTVASPAGPDKIKVLHLKDMDQQLDFWNLMAYDYAGSFSSLSGHQANVYNDTS 228
Query: 600 EPYPN-YNINTALKLIDELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPG 653
P +N TAL L G KIV+G+P YG+S+ A TDGPG
Sbjct: 229 NPLSTPFNTQTALDLYRAGGVPANKIVLGMPLYGRSF-----------ANTDGPG 272
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 116/269 (43%), Gaps = 37/269 (13%)
Query: 1340 FKIVCYFTNWAWYRPGKGKYVLKKVPWINILKLYVTLQTGLG--------TDQEKE---N 1388
++ V YF NWA Y L ++L + ++ G D EK +
Sbjct: 5 YRSVVYFVNWAIYGRNHNPQDLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHYPGD 64
Query: 1389 TFLKISELTYVHILFYERVVTLKK--KGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFI 1446
++ Y I +++ LKK + +KV L+IGGW S ++ ++ R+ F
Sbjct: 65 SWSDTGNNVYGCI---KQLYLLKKQNRNLKVLLSIGGWTYS--PNFAPAASTDAGRKNFA 119
Query: 1447 EHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG----- 1501
+ VK L FDGLD+DWEYP D F L +RE+ A +
Sbjct: 120 KTAVKLLQDLGFDGLDIDWEYPEN---------DQQANDFVLLLREVRTALDSYSAANAG 170
Query: 1502 ---LLLSAAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDD 1558
LL+ A SP+ +K + + LD+ ++M YDY G + +GH A +Y +
Sbjct: 171 GQHFLLTVA-SPAGPDKIKVLHLKDMDQQLDFWNLMAYDYAGSFSSLSGHQANVYNDTSN 229
Query: 1559 DFFY-FNANFTMNYWMKKGAPSRKLVMGV 1586
FN ++ + G P+ K+V+G+
Sbjct: 230 PLSTPFNTQTALDLYRAGGVPANKIVLGM 258
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 22/143 (15%)
Query: 2190 YKVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSHNNKLDLEQGF 2249
Y+ + Y+ +WA + ++P+D+ TH++YAFA++ + + ++ D+E+ +
Sbjct: 5 YRSVVYFVNWAIYGR---NHNPQDLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHY 61
Query: 2250 YEK-----------------ITKFNERGIQVILAIGGWSDSRSDKYSRLVNDIPARRNFV 2292
+ K R ++V+L+IGGW+ S ++ + R+NF
Sbjct: 62 PGDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWT--YSPNFAPAASTDAGRKNFA 119
Query: 2293 RHVTEFLEFYGFNGLEFAWEYPK 2315
+ + L+ GF+GL+ WEYP+
Sbjct: 120 KTAVKLLQDLGFDGLDIDWEYPE 142
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 82/374 (21%), Positives = 146/374 (39%), Gaps = 61/374 (16%)
Query: 10 STKHQVVCYVEAKSAY--RHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALIPEDLEYD 67
S+ ++ V Y + Y H P V+ + THV+YA+A + P + + D D
Sbjct: 2 SSGYRSVVYFVNWAIYGRNHNPQDLPVERL-----THVLYAFANVRPETGEVYMTDSWAD 56
Query: 68 VIK---------------GGYKSFLGLKEANPELKVYLAVKS-----NFVSITSDRESRL 107
+ K G K LK+ N LKV L++ NF S R
Sbjct: 57 IEKHYPGDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWTYSPNFAPAASTDAGRK 116
Query: 108 NFISSVLEMFDMYKFDGLDLNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRR-- 165
NF + +++ FDGLD++ + P + + +DF ++E+ + L
Sbjct: 117 NFAKTAVKLLQDLGFDGLDIDWEYPEND-----------QQANDFVLLLREVRTALDSYS 165
Query: 166 ------NNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTK 219
++ LT+ SP D K ++ + + +D L ++ D+
Sbjct: 166 AANAGGQHFLLTVASPAGPD-KIKVLHLKDMDQQLDFWNLMAY--DYAGSFSSLSGHQAN 222
Query: 220 VNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGP 279
V ++ ++ N ++A+ + G +I++G+P +G+S+ + +G
Sbjct: 223 VYNDTSNPLSTPFNTQTALDLYRAGGVPANKIVLGMPLYGRSFANTDGPGKPYNGVGQGS 282
Query: 280 GTEG--KYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKM 337
G Y +P A V D + D+ + F+ I+Y+N K
Sbjct: 283 WENGVWDYKALPQAGATEHV---LPDIMASYSYDATNK-FL------ISYDNPQVANLKS 332
Query: 338 NYIKDRHLGGAMLW 351
YIK LGGAM W
Sbjct: 333 GYIKSLGLGGAMWW 346
>pdb|1KFW|A Chain A, Structure Of Catalytic Domain Of Psychrophilic Chitinase B
From Arthrobacter Tad20
Length = 435
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 159/385 (41%), Gaps = 51/385 (13%)
Query: 1713 IVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYE 1772
+ C+ N + G SD D G+A D+ V DTW +
Sbjct: 54 LTCFMAN----KAQGTGPNGSDGAGDAWADFGMGYAA---DKSVSGKADTWDQPLAGSFN 106
Query: 1773 KVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHN------ 1824
++ LK K +KV +++GGW S +S+ ++ +R K ++ ++ ++ N
Sbjct: 107 QLKQLKAKNPKLKVMISLGGWTWS--KNFSKAAATEASRQKLVSSCIDLYIKGNLPNFEG 164
Query: 1825 ----------FDGLDLDWEYPKCWQVDCKQG--PASDKQGFADLIKELR------AAFNP 1866
FDG+D+DWE+P G +D+ F L+ E R + N
Sbjct: 165 RGGAGAAAGIFDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRKQLDAYGSTNN 224
Query: 1867 HDLLLSAAVSPSKAVID-NAYDIPVMSENLDWISVMTYDYHGQWDKK-TGHVAPMYALPN 1924
+LSA + + A ID +D P ++LD+ S+ YD HG W+ TGH A +Y P
Sbjct: 225 KKYVLSAFLPANPADIDAGGWDDPANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPA 284
Query: 1925 DT---TPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAG 1981
D + F+A+ ++ +++ G D K++ G+ YG+ +T A N +G A G
Sbjct: 285 DPRAPSKKFSADKAVKKYLAAGIDPKQLGLGLAAYGRGWTGAK------NVSPWGPATDG 338
Query: 1982 ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVK 2041
Y+ + D + R + G QW +D+ A K +++
Sbjct: 339 APGTYETANEDYDKLKTLGTDHYDAATGSAWR-----YDGTQWWSYDNIATTKQKTDYIV 393
Query: 2042 YNDLGGAMIWALDLDDFKNFCGCES 2066
LGG M W L D G S
Sbjct: 394 SKGLGGGMWWELSGDRNGELVGAMS 418
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 110/248 (44%), Gaps = 41/248 (16%)
Query: 1404 YERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQ---- 1457
+ ++ LK K +KV +++GGW S +S+ + +RQ+ + + +K
Sbjct: 105 FNQLKQLKAKNPKLKVMISLGGWTWSK--NFSKAAATEASRQKLVSSCIDLYIKGNLPNF 162
Query: 1458 ------------FDGLDLDWEYPTCWQVNCDAGPDS--DKESFGLFVRELHQAFKPHG-- 1501
FDG+D+DWE+P G D+ D+ +F + E + +G
Sbjct: 163 EGRGGAGAAAGIFDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRKQLDAYGST 222
Query: 1502 ----LLLSAAVSPSKQVINA-AYDVKALSESLDWISVMTYDYHGQWDKK-TGHVAPLYEH 1555
+LSA + + I+A +D A +SLD+ S+ YD HG W+ TGH A LY+
Sbjct: 223 NNKKYVLSAFLPANPADIDAGGWDDPANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDD 282
Query: 1556 PDDDFF---YFNANFTMNYWMKKGAPSRKLVMGVHPLLSTIT---EVLGHGPG-----GN 1604
P D F+A+ + ++ G ++L +G+ T V GP G
Sbjct: 283 PADPRAPSKKFSADKAVKKYLAAGIDPKQLGLGLAAYGRGWTGAKNVSPWGPATDGAPGT 342
Query: 1605 YESTTEEY 1612
YE+ E+Y
Sbjct: 343 YETANEDY 350
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 78/358 (21%), Positives = 133/358 (37%), Gaps = 73/358 (20%)
Query: 69 IKGGYKSFLGLKEANPELKVYLAVKS-----NFVSITSDRESRLNFISSVLEMF------ 117
+ G + LK NP+LKV +++ NF + SR +SS ++++
Sbjct: 101 LAGSFNQLKQLKAKNPKLKVMISLGGWTWSKNFSKAAATEASRQKLVSSCIDLYIKGNLP 160
Query: 118 ----------DMYKFDGLDLNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTL---- 163
FDG+D++ + P N N+R++F + E L
Sbjct: 161 NFEGRGGAGAAAGIFDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRKQLDAYG 220
Query: 164 RRNNYQLTLTS-----PGVIDRKT-------SLVDISVVAPLVDL-----ILLKSFNNDH 206
NN + L++ P ID +D + DL L +
Sbjct: 221 STNNKKYVLSAFLPANPADIDAGGWDDPANFKSLDFGSIQGY-DLHGAWNPTLTGHQANL 279
Query: 207 MDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYR-LF 265
DD P P+ K + + AV ++ G P+Q+ +G+ +G+ +
Sbjct: 280 YDDPADPRAPSKKFSA------------DKAVKKYLAAGIDPKQLGLGLAAYGRGWTGAK 327
Query: 266 NRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGEPFMVKKDEWI 325
N S +G AT PGT Y E +K K H+ + G + +W
Sbjct: 328 NVSPWGP-ATDGAPGT---------YETANEDYDKLKTLGTDHYDAATGSAWRYDGTQWW 377
Query: 326 TYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGFCGQKYPLLSAVVSNLQPEEPEP 383
+Y+N + ++K +YI + LGG M W L D + L+ A+ + P P
Sbjct: 378 SYDNIATTKQKTDYIVSKGLGGGMWWELSGD-------RNGELVGAMSDKFRAAAPGP 428
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 98/210 (46%), Gaps = 31/210 (14%)
Query: 456 KVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTF-----LRRFD----------- 499
K+K++I++GGWT S + +S+ ++ ++R+K + S + L F+
Sbjct: 117 KLKVMISLGGWTWS--KNFSKAAATEASRQKLVSSCIDLYIKGNLPNFEGRGGAGAAAGI 174
Query: 500 FAGLHFDWNYPV--CWQADCSKQHKADKGNFVKLIQELKAEFDKHD------YSIAVGI- 550
F G+ DW +P A D+ NF L+ E + + D + Y ++ +
Sbjct: 175 FDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRKQLDAYGSTNNKKYVLSAFLP 234
Query: 551 SGYKEILEVAYDFPALNDHVEFMSLMSYDYHGAWE-GITGLVSPLNSRPGEPYP---NYN 606
+ +I +D PA ++F S+ YD HGAW +TG + L P +P ++
Sbjct: 235 ANPADIDAGGWDDPANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPADPRAPSKKFS 294
Query: 607 INTALKLIDELGGDKRKIVIGVPFYGQSYT 636
+ A+K G D +++ +G+ YG+ +T
Sbjct: 295 ADKAVKKYLAAGIDPKQLGLGLAAYGRGWT 324
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 2341 YAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLD 2380
+ Y+G W SYD+ ++K I GLGG M W + D
Sbjct: 369 WRYDGTQWWSYDNIATTKQKTDYIVSKGLGGGMWWELSGD 408
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex With
Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex With
Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex With
Chitobio-Thiazoline Thioamide
Length = 548
Score = 97.4 bits (241), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 155/355 (43%), Gaps = 44/355 (12%)
Query: 1747 FAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVN 1804
FA L Q K W D + ++ ALK+ +K+ +IGGW S +
Sbjct: 209 FAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMG 262
Query: 1805 SQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAA 1863
+ R +F+ V F+ F DG+D+DWE+P + G D + + L+KELRA
Sbjct: 263 DKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAM 322
Query: 1864 FNP------HDLLLSAAVSPSKAVIDN-AYDIPVMSENLDWISVMTYDYHGQWD-KKTGH 1915
+ L++A+S K ID AY+ V ++D I +M+YD++G +D K GH
Sbjct: 323 LDQLSAETGRKYELTSAISAGKDKIDKVAYN--VAQNSMDHIFLMSYDFYGAFDLKNLGH 380
Query: 1916 VAPMYA---LPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNS 1972
+ A P+ T N +L ++ G K++ G MYG+ +T + +N +
Sbjct: 381 QTALNAPAWKPDTAYTTVNGVNAL---LTQGVKPGKIVVGTAMYGRGWTGVNGYQNNI-- 435
Query: 1973 QTYGGAEAG--ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK---GDQWVGF 2027
+ G G + T G + Y +I + W D PY FK GD + F
Sbjct: 436 -PFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQYTYDATAE-APYVFKPSTGD-LITF 492
Query: 2028 DDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKNFCGCESYPLLKTINRVLRNYPG 2082
DD + K ++V LGG W +D D+ +L ++N L N G
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADNGD---------ILNSMNASLGNSAG 538
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 144/334 (43%), Gaps = 45/334 (13%)
Query: 49 YAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKSNFVS----ITSDRE 104
+AA+ + + D Y KG + + LK+A+P+LK+ ++ +S D+
Sbjct: 209 FAALQKAQKGVTAWDDPY---KGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKV 265
Query: 105 SRLNFISSVLEMFDMYKF-DGLDLNVKDPAL-----NXXXXXXLESIANERSDFSTFIQE 158
R F+ SV E +KF DG+D++ + P N E+ + + +
Sbjct: 266 KRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQ 325
Query: 159 LSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF---------NNDHMDD 209
LS+ R Y+LT D K V +V +D I L S+ N H
Sbjct: 326 LSAETGRK-YELTSAISAGKD-KIDKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTA 383
Query: 210 EVVPV-KPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFN-- 266
P KP+T +T+ N + + +G +P +I++G +G+ + N
Sbjct: 384 LNAPAWKPDT-----AYTTVNGVNAL-------LTQGVKPGKIVVGTAMYGRGWTGVNGY 431
Query: 267 RSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGE-PFMVK--KDE 323
++ T GP K T G + + ++ ++F W++ D+ E P++ K +
Sbjct: 432 QNNIPFTGTATGPV---KGTWENGIVDYRQIASQFMSGEWQYTYDATAEAPYVFKPSTGD 488
Query: 324 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 357
IT+++ S++ K Y+ D+ LGG W +D D+
Sbjct: 489 LITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 14/193 (7%)
Query: 453 THGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDF-AGLHFDWNYPV 511
H +KIL +IGGWT S + + R +F+ SV FL+ + F G+ DW +P
Sbjct: 239 AHPDLKILPSIGGWTLSDPFFF---MGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPG 295
Query: 512 CWQADCSKQHKADKGNFVKLIQELKAEFDK------HDYSIAVGIS-GYKEILEVAYDFP 564
A+ + D +V L++EL+A D+ Y + IS G +I +VAY+
Sbjct: 296 GKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELTSAISAGKDKIDKVAYNVA 355
Query: 565 ALNDHVEFMSLMSYDYHGAWE-GITGLVSPLNSRPGEPYPNYNINTALKLIDELGGDKRK 623
+ ++ + LMSYD++GA++ G + LN+ +P Y + + G K
Sbjct: 356 --QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLTQGVKPGK 413
Query: 624 IVIGVPFYGQSYT 636
IV+G YG+ +T
Sbjct: 414 IVVGTAMYGRGWT 426
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 22/197 (11%)
Query: 1404 YERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DG 1460
+ +++ LK+ +K+ +IGGW S + R RF+ V +FL ++F DG
Sbjct: 230 FGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMGDKVKRDRFVGSVKEFLQTWKFFDG 286
Query: 1461 LDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELH------QAFKPHGLLLSAAVSPSKQV 1514
+D+DWE+P N + G D E++ L ++EL A L++A+S K
Sbjct: 287 VDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELTSAISAGKDK 346
Query: 1515 IN-AAYDVKALSESLDWISVMTYDYHGQWD-KKTGHVAPLYE---HPDDDFFYFNANFTM 1569
I+ AY+V S+D I +M+YD++G +D K GH L PD + N +
Sbjct: 347 IDKVAYNVA--QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNG---V 401
Query: 1570 NYWMKKGAPSRKLVMGV 1586
N + +G K+V+G
Sbjct: 402 NALLTQGVKPGKIVVGT 418
Score = 38.1 bits (87), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 2318 QTCSTVKSHEWTVVRDSLGARGPYAY---NGKLWLSYDDTRDIRRKCKSIKQDGLGGAMV 2374
Q S S EW D+ A PY + G L +++DD R ++ K K + LGG
Sbjct: 458 QIASQFMSGEWQYTYDAT-AEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFS 515
Query: 2375 WSIDLDDFQNLCSC 2388
W ID D+ L S
Sbjct: 516 WEIDADNGDILNSM 529
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 718 TQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQ---GDQWVSYEDPTSLTEKVKFIK 774
T + G++ Y +I + + +W + + P+ F+ GD ++++D S+ K K++
Sbjct: 448 TWENGIVDYRQIASQFMSGEWQYTYDATAEAPYVFKPSTGD-LITFDDARSVQAKGKYVL 506
Query: 775 SNGYAGIMAWTIDLDD 790
G+ +W ID D+
Sbjct: 507 DKQLGGLFSWEIDADN 522
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At 1.55
Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With Allosamidin
Length = 540
Score = 97.4 bits (241), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 156/355 (43%), Gaps = 44/355 (12%)
Query: 1747 FAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVN 1804
FA L Q K W D + ++ ALK+ +K+ +IGGW S +
Sbjct: 209 FAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMG 262
Query: 1805 SQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAA 1863
+ R +F+ V F+ F DG+D+DWE+P + G D + + L+KELRA
Sbjct: 263 DKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAM 322
Query: 1864 FNPHDL------LLSAAVSPSKAVIDN-AYDIPVMSENLDWISVMTYDYHGQWD-KKTGH 1915
+ + L++A+S K ID AY+ V ++D I +M+YD++G +D K GH
Sbjct: 323 LDQLSVETGRKYELTSAISAGKDKIDKVAYN--VAQNSMDHIFLMSYDFYGAFDLKNLGH 380
Query: 1916 VAPMYA---LPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNS 1972
+ A P+ T N +L ++ G K++ G MYG+ +T + +N +
Sbjct: 381 QTALNAPAWKPDTAYTTVNGVNAL---LAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI-- 435
Query: 1973 QTYGGAEAG--ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK---GDQWVGF 2027
+ G G + T G + Y +I + W D PY FK GD + F
Sbjct: 436 -PFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAE-APYVFKPSTGD-LITF 492
Query: 2028 DDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKNFCGCESYPLLKTINRVLRNYPG 2082
DD + K ++V LGG W +D D+ +L ++N L N G
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADNGD---------ILNSMNASLGNSAG 538
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 142/334 (42%), Gaps = 45/334 (13%)
Query: 49 YAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKSNFVS----ITSDRE 104
+AA+ + + D Y KG + + LK+A+P+LK+ ++ +S D+
Sbjct: 209 FAALQKAQKGVTAWDDPY---KGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKV 265
Query: 105 SRLNFISSVLEMFDMYKF-DGLDLNVKDPAL-----NXXXXXXLESIANERSDFSTFIQE 158
R F+ SV E +KF DG+D++ + P N E+ + + +
Sbjct: 266 KRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQ 325
Query: 159 LSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF---------NNDHMDD 209
LS R Y+LT D K V +V +D I L S+ N H
Sbjct: 326 LSVETGRK-YELTSAISAGKD-KIDKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTA 383
Query: 210 EVVPV-KPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFN-- 266
P KP+T +T+ N + + +G +P +I++G +G+ + N
Sbjct: 384 LNAPAWKPDT-----AYTTVNGVNAL-------LAQGVKPGKIVVGTAMYGRGWTGVNGY 431
Query: 267 RSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGE-PFMVK--KDE 323
++ T GP K T G + + ++ +F W++ D+ E P++ K +
Sbjct: 432 QNNIPFTGTATGPV---KGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD 488
Query: 324 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 357
IT+++ S++ K Y+ D+ LGG W +D D+
Sbjct: 489 LITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 96/197 (48%), Gaps = 22/197 (11%)
Query: 1404 YERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DG 1460
+ +++ LK+ +K+ +IGGW S + R RF+ V +FL ++F DG
Sbjct: 230 FGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMGDKVKRDRFVGSVKEFLQTWKFFDG 286
Query: 1461 LDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGL------LLSAAVSPSKQV 1514
+D+DWE+P N + G D E++ L ++EL + L++A+S K
Sbjct: 287 VDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDK 346
Query: 1515 IN-AAYDVKALSESLDWISVMTYDYHGQWD-KKTGHVAPLYE---HPDDDFFYFNANFTM 1569
I+ AY+V S+D I +M+YD++G +D K GH L PD + N +
Sbjct: 347 IDKVAYNVA--QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNG---V 401
Query: 1570 NYWMKKGAPSRKLVMGV 1586
N + +G K+V+G
Sbjct: 402 NALLAQGVKPGKIVVGT 418
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 14/193 (7%)
Query: 453 THGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDF-AGLHFDWNYPV 511
H +KIL +IGGWT S + + R +F+ SV FL+ + F G+ DW +P
Sbjct: 239 AHPDLKILPSIGGWTLSDPFFF---MGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPG 295
Query: 512 CWQADCSKQHKADKGNFVKLIQELKAEFDK------HDYSIAVGIS-GYKEILEVAYDFP 564
A+ + D +V L++EL+A D+ Y + IS G +I +VAY+
Sbjct: 296 GKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYNVA 355
Query: 565 ALNDHVEFMSLMSYDYHGAWE-GITGLVSPLNSRPGEPYPNYNINTALKLIDELGGDKRK 623
+ ++ + LMSYD++GA++ G + LN+ +P Y + + G K
Sbjct: 356 --QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGK 413
Query: 624 IVIGVPFYGQSYT 636
IV+G YG+ +T
Sbjct: 414 IVVGTAMYGRGWT 426
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 2318 QTCSTVKSHEWTVVRDSLGARGPYAY---NGKLWLSYDDTRDIRRKCKSIKQDGLGGAMV 2374
Q S EW D+ A PY + G L +++DD R ++ K K + LGG
Sbjct: 458 QIAGQFMSGEWQYTYDAT-AEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFS 515
Query: 2375 WSIDLDDFQNLCSC 2388
W ID D+ L S
Sbjct: 516 WEIDADNGDILNSM 529
Score = 35.0 bits (79), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 718 TQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQ---GDQWVSYEDPTSLTEKVKFIK 774
T + G++ Y +I + + +W + + P+ F+ GD ++++D S+ K K++
Sbjct: 448 TWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD-LITFDDARSVQAKGKYVL 506
Query: 775 SNGYAGIMAWTIDLDD 790
G+ +W ID D+
Sbjct: 507 DKQLGGLFSWEIDADN 522
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex With
Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 97.4 bits (241), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 155/355 (43%), Gaps = 44/355 (12%)
Query: 1747 FAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVN 1804
FA L Q K W D + ++ ALK+ +K+ +IGGW S +
Sbjct: 209 FAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMG 262
Query: 1805 SQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAA 1863
+ R +F+ V F+ F DG+D+DWE+P + G D + + L+KELRA
Sbjct: 263 DKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAM 322
Query: 1864 FNP------HDLLLSAAVSPSKAVIDN-AYDIPVMSENLDWISVMTYDYHGQWD-KKTGH 1915
+ L++A+S K ID AY+ V ++D I +M+YD++G +D K GH
Sbjct: 323 LDQLSAETGRKYELTSAISAGKDKIDKVAYN--VAQNSMDHIFLMSYDFYGAFDLKNLGH 380
Query: 1916 VAPMYA---LPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNS 1972
+ A P+ T N +L ++ G K++ G MYG+ +T + +N +
Sbjct: 381 QTALNAPAWKPDTAYTTVNGVNAL---LTQGVKPGKIVVGTAMYGRGWTGVNGYQNNI-- 435
Query: 1973 QTYGGAEAG--ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK---GDQWVGF 2027
+ G G + T G + Y +I + W D PY FK GD + F
Sbjct: 436 -PFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQYTYDATAE-APYVFKPSTGD-LITF 492
Query: 2028 DDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKNFCGCESYPLLKTINRVLRNYPG 2082
DD + K ++V LGG W +D D+ +L ++N L N G
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADNGD---------ILNSMNASLGNSAG 538
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 144/334 (43%), Gaps = 45/334 (13%)
Query: 49 YAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKSNFVS----ITSDRE 104
+AA+ + + D Y KG + + LK+A+P+LK+ ++ +S D+
Sbjct: 209 FAALQKAQKGVTAWDDPY---KGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKV 265
Query: 105 SRLNFISSVLEMFDMYKF-DGLDLNVKDPAL-----NXXXXXXLESIANERSDFSTFIQE 158
R F+ SV E +KF DG+D++ + P N E+ + + +
Sbjct: 266 KRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQ 325
Query: 159 LSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF---------NNDHMDD 209
LS+ R Y+LT D K V +V +D I L S+ N H
Sbjct: 326 LSAETGRK-YELTSAISAGKD-KIDKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTA 383
Query: 210 EVVPV-KPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFN-- 266
P KP+T +T+ N + + +G +P +I++G +G+ + N
Sbjct: 384 LNAPAWKPDT-----AYTTVNGVNAL-------LTQGVKPGKIVVGTAMYGRGWTGVNGY 431
Query: 267 RSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGE-PFMVK--KDE 323
++ T GP K T G + + ++ ++F W++ D+ E P++ K +
Sbjct: 432 QNNIPFTGTATGPV---KGTWENGIVDYRQIASQFMSGEWQYTYDATAEAPYVFKPSTGD 488
Query: 324 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 357
IT+++ S++ K Y+ D+ LGG W +D D+
Sbjct: 489 LITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 14/193 (7%)
Query: 453 THGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDF-AGLHFDWNYPV 511
H +KIL +IGGWT S + + R +F+ SV FL+ + F G+ DW +P
Sbjct: 239 AHPDLKILPSIGGWTLSDPFFF---MGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPG 295
Query: 512 CWQADCSKQHKADKGNFVKLIQELKAEFDK------HDYSIAVGIS-GYKEILEVAYDFP 564
A+ + D +V L++EL+A D+ Y + IS G +I +VAY+
Sbjct: 296 GKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELTSAISAGKDKIDKVAYNVA 355
Query: 565 ALNDHVEFMSLMSYDYHGAWE-GITGLVSPLNSRPGEPYPNYNINTALKLIDELGGDKRK 623
+ ++ + LMSYD++GA++ G + LN+ +P Y + + G K
Sbjct: 356 --QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLTQGVKPGK 413
Query: 624 IVIGVPFYGQSYT 636
IV+G YG+ +T
Sbjct: 414 IVVGTAMYGRGWT 426
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 22/197 (11%)
Query: 1404 YERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DG 1460
+ +++ LK+ +K+ +IGGW S + R RF+ V +FL ++F DG
Sbjct: 230 FGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMGDKVKRDRFVGSVKEFLQTWKFFDG 286
Query: 1461 LDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELH------QAFKPHGLLLSAAVSPSKQV 1514
+D+DWE+P N + G D E++ L ++EL A L++A+S K
Sbjct: 287 VDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELTSAISAGKDK 346
Query: 1515 IN-AAYDVKALSESLDWISVMTYDYHGQWD-KKTGHVAPLYE---HPDDDFFYFNANFTM 1569
I+ AY+V S+D I +M+YD++G +D K GH L PD + N +
Sbjct: 347 IDKVAYNVA--QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNG---V 401
Query: 1570 NYWMKKGAPSRKLVMGV 1586
N + +G K+V+G
Sbjct: 402 NALLTQGVKPGKIVVGT 418
Score = 38.1 bits (87), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 2318 QTCSTVKSHEWTVVRDSLGARGPYAY---NGKLWLSYDDTRDIRRKCKSIKQDGLGGAMV 2374
Q S S EW D+ A PY + G L +++DD R ++ K K + LGG
Sbjct: 458 QIASQFMSGEWQYTYDAT-AEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFS 515
Query: 2375 WSIDLDDFQNLCSC 2388
W ID D+ L S
Sbjct: 516 WEIDADNGDILNSM 529
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 718 TQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQ---GDQWVSYEDPTSLTEKVKFIK 774
T + G++ Y +I + + +W + + P+ F+ GD ++++D S+ K K++
Sbjct: 448 TWENGIVDYRQIASQFMSGEWQYTYDATAEAPYVFKPSTGD-LITFDDARSVQAKGKYVL 506
Query: 775 SNGYAGIMAWTIDLDD 790
G+ +W ID D+
Sbjct: 507 DKQLGGLFSWEIDADN 522
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant W167a
In Complex With Allosamidin
Length = 563
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 155/355 (43%), Gaps = 44/355 (12%)
Query: 1747 FAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVN 1804
FA L Q K W D + ++ ALK+ +K+ +IGGW S +
Sbjct: 232 FAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMG 285
Query: 1805 SQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAA 1863
+ R +F+ V F+ F DG+D+DWE+P + G D + + L+KELRA
Sbjct: 286 DKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAM 345
Query: 1864 FNP------HDLLLSAAVSPSKAVIDN-AYDIPVMSENLDWISVMTYDYHGQWD-KKTGH 1915
+ L++A+S K ID AY+ V ++D I +M+YD++G +D K GH
Sbjct: 346 LDQLSAETGRKYELTSAISAGKDKIDKVAYN--VAQNSMDHIFLMSYDFYGAFDLKNLGH 403
Query: 1916 VAPMYA---LPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNS 1972
+ A P+ T N +L ++ G K++ G MYG+ +T + +N +
Sbjct: 404 QTALNAPAWKPDTAYTTVNGVNAL---LAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI-- 458
Query: 1973 QTYGGAEAG--ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK---GDQWVGF 2027
+ G G + T G + Y +I + W D PY FK GD + F
Sbjct: 459 -PFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQYTYDATAE-APYVFKPSTGD-LITF 515
Query: 2028 DDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKNFCGCESYPLLKTINRVLRNYPG 2082
DD + K ++V LGG W +D D+ +L ++N L N G
Sbjct: 516 DDARSVQAKGKYVLDKQLGGLFSWEIDADNGD---------ILNSMNASLGNSAG 561
Score = 73.9 bits (180), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 144/334 (43%), Gaps = 45/334 (13%)
Query: 49 YAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKSNFVS----ITSDRE 104
+AA+ + + D Y KG + + LK+A+P+LK+ ++ +S D+
Sbjct: 232 FAALQKAQKGVTAWDDPY---KGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKV 288
Query: 105 SRLNFISSVLEMFDMYKF-DGLDLNVKDPAL-----NXXXXXXLESIANERSDFSTFIQE 158
R F+ SV E +KF DG+D++ + P N E+ + + +
Sbjct: 289 KRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQ 348
Query: 159 LSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF---------NNDHMDD 209
LS+ R Y+LT D K V +V +D I L S+ N H
Sbjct: 349 LSAETGRK-YELTSAISAGKD-KIDKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTA 406
Query: 210 EVVPV-KPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFN-- 266
P KP+T +T+ N + + +G +P +I++G +G+ + N
Sbjct: 407 LNAPAWKPDT-----AYTTVNGVNAL-------LAQGVKPGKIVVGTAMYGRGWTGVNGY 454
Query: 267 RSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGE-PFMVK--KDE 323
++ T GP K T G + + ++ ++F W++ D+ E P++ K +
Sbjct: 455 QNNIPFTGTATGPV---KGTWENGIVDYRQIASQFMSGEWQYTYDATAEAPYVFKPSTGD 511
Query: 324 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 357
IT+++ S++ K Y+ D+ LGG W +D D+
Sbjct: 512 LITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 545
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 22/197 (11%)
Query: 1404 YERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DG 1460
+ +++ LK+ +K+ +IGGW S + R RF+ V +FL ++F DG
Sbjct: 253 FGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMGDKVKRDRFVGSVKEFLQTWKFFDG 309
Query: 1461 LDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELH------QAFKPHGLLLSAAVSPSKQV 1514
+D+DWE+P N + G D E++ L ++EL A L++A+S K
Sbjct: 310 VDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELTSAISAGKDK 369
Query: 1515 IN-AAYDVKALSESLDWISVMTYDYHGQWD-KKTGHVAPLYE---HPDDDFFYFNANFTM 1569
I+ AY+V S+D I +M+YD++G +D K GH L PD + N +
Sbjct: 370 IDKVAYNVA--QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNG---V 424
Query: 1570 NYWMKKGAPSRKLVMGV 1586
N + +G K+V+G
Sbjct: 425 NALLAQGVKPGKIVVGT 441
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 14/193 (7%)
Query: 453 THGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDF-AGLHFDWNYPV 511
H +KIL +IGGWT S + + R +F+ SV FL+ + F G+ DW +P
Sbjct: 262 AHPDLKILPSIGGWTLSDPFFF---MGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPG 318
Query: 512 CWQADCSKQHKADKGNFVKLIQELKAEFDK------HDYSIAVGIS-GYKEILEVAYDFP 564
A+ + D +V L++EL+A D+ Y + IS G +I +VAY+
Sbjct: 319 GKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELTSAISAGKDKIDKVAYNVA 378
Query: 565 ALNDHVEFMSLMSYDYHGAWE-GITGLVSPLNSRPGEPYPNYNINTALKLIDELGGDKRK 623
+ ++ + LMSYD++GA++ G + LN+ +P Y + + G K
Sbjct: 379 --QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGK 436
Query: 624 IVIGVPFYGQSYT 636
IV+G YG+ +T
Sbjct: 437 IVVGTAMYGRGWT 449
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 2318 QTCSTVKSHEWTVVRDSLGARGPYAY---NGKLWLSYDDTRDIRRKCKSIKQDGLGGAMV 2374
Q S S EW D+ A PY + G L +++DD R ++ K K + LGG
Sbjct: 481 QIASQFMSGEWQYTYDAT-AEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFS 538
Query: 2375 WSIDLDDFQNLCSCGPYPLLSAVNYELRNTT 2405
W ID D+ +L+++N L N+
Sbjct: 539 WEIDADNGD---------ILNSMNASLGNSA 560
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 718 TQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQ---GDQWVSYEDPTSLTEKVKFIK 774
T + G++ Y +I + + +W + + P+ F+ GD ++++D S+ K K++
Sbjct: 471 TWENGIVDYRQIASQFMSGEWQYTYDATAEAPYVFKPSTGD-LITFDDARSVQAKGKYVL 529
Query: 775 SNGYAGIMAWTIDLDD 790
G+ +W ID D+
Sbjct: 530 DKQLGGLFSWEIDADN 545
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3 Angstroms
Resolution
Length = 540
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 155/355 (43%), Gaps = 44/355 (12%)
Query: 1747 FAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVN 1804
FA L Q K W D + ++ ALK+ +K+ +IGGW S +
Sbjct: 209 FAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMG 262
Query: 1805 SQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAA 1863
+ R +F+ V F+ F DG+D+DWE+P + G D + + L+KELRA
Sbjct: 263 DKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAM 322
Query: 1864 FNP------HDLLLSAAVSPSKAVIDN-AYDIPVMSENLDWISVMTYDYHGQWD-KKTGH 1915
+ L++A+S K ID AY+ V ++D I +M+YD++G +D K GH
Sbjct: 323 LDQLSTETGRKYELTSAISAGKDKIDKVAYN--VAQNSMDHIFLMSYDFYGAFDLKNLGH 380
Query: 1916 VAPMYA---LPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNS 1972
+ A P+ T N +L ++ G K++ G MYG+ +T + +N +
Sbjct: 381 QTALNAPAWKPDTAYTTVNGVNAL---LAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI-- 435
Query: 1973 QTYGGAEAG--ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK---GDQWVGF 2027
+ G G + T G + Y +I + W D PY FK GD + F
Sbjct: 436 -PFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAE-APYVFKPSTGD-LITF 492
Query: 2028 DDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKNFCGCESYPLLKTINRVLRNYPG 2082
DD + K ++V LGG W +D D+ +L ++N L N G
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADNGD---------ILNSMNASLGNSAG 538
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 143/334 (42%), Gaps = 45/334 (13%)
Query: 49 YAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKSNFVS----ITSDRE 104
+AA+ + + D Y KG + + LK+A+P+LK+ ++ +S D+
Sbjct: 209 FAALQKAQKGVTAWDDPY---KGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKV 265
Query: 105 SRLNFISSVLEMFDMYKF-DGLDLNVKDPAL-----NXXXXXXLESIANERSDFSTFIQE 158
R F+ SV E +KF DG+D++ + P N E+ + + +
Sbjct: 266 KRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQ 325
Query: 159 LSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF---------NNDHMDD 209
LS+ R Y+LT D K V +V +D I L S+ N H
Sbjct: 326 LSTETGRK-YELTSAISAGKD-KIDKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTA 383
Query: 210 EVVPV-KPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFN-- 266
P KP+T +T+ N + + +G +P +I++G +G+ + N
Sbjct: 384 LNAPAWKPDT-----AYTTVNGVNAL-------LAQGVKPGKIVVGTAMYGRGWTGVNGY 431
Query: 267 RSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGE-PFMVK--KDE 323
++ T GP K T G + + ++ +F W++ D+ E P++ K +
Sbjct: 432 QNNIPFTGTATGPV---KGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD 488
Query: 324 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 357
IT+++ S++ K Y+ D+ LGG W +D D+
Sbjct: 489 LITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 14/193 (7%)
Query: 453 THGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDF-AGLHFDWNYPV 511
H +KIL +IGGWT S + + R +F+ SV FL+ + F G+ DW +P
Sbjct: 239 AHPDLKILPSIGGWTLSDPFFF---MGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPG 295
Query: 512 CWQADCSKQHKADKGNFVKLIQELKAEFDK------HDYSIAVGIS-GYKEILEVAYDFP 564
A+ + D +V L++EL+A D+ Y + IS G +I +VAY+
Sbjct: 296 GKGANPNLGSPQDGETYVLLMKELRAMLDQLSTETGRKYELTSAISAGKDKIDKVAYNVA 355
Query: 565 ALNDHVEFMSLMSYDYHGAWE-GITGLVSPLNSRPGEPYPNYNINTALKLIDELGGDKRK 623
+ ++ + LMSYD++GA++ G + LN+ +P Y + + G K
Sbjct: 356 --QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGK 413
Query: 624 IVIGVPFYGQSYT 636
IV+G YG+ +T
Sbjct: 414 IVVGTAMYGRGWT 426
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 22/197 (11%)
Query: 1404 YERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DG 1460
+ +++ LK+ +K+ +IGGW S + R RF+ V +FL ++F DG
Sbjct: 230 FGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMGDKVKRDRFVGSVKEFLQTWKFFDG 286
Query: 1461 LDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKP------HGLLLSAAVSPSKQV 1514
+D+DWE+P N + G D E++ L ++EL L++A+S K
Sbjct: 287 VDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSTETGRKYELTSAISAGKDK 346
Query: 1515 IN-AAYDVKALSESLDWISVMTYDYHGQWD-KKTGHVAPLYE---HPDDDFFYFNANFTM 1569
I+ AY+V S+D I +M+YD++G +D K GH L PD + N +
Sbjct: 347 IDKVAYNVA--QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNG---V 401
Query: 1570 NYWMKKGAPSRKLVMGV 1586
N + +G K+V+G
Sbjct: 402 NALLAQGVKPGKIVVGT 418
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 2318 QTCSTVKSHEWTVVRDSLGARGPYAY---NGKLWLSYDDTRDIRRKCKSIKQDGLGGAMV 2374
Q S EW D+ A PY + G L +++DD R ++ K K + LGG
Sbjct: 458 QIAGQFMSGEWQYTYDAT-AEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFS 515
Query: 2375 WSIDLDDFQNLCSC 2388
W ID D+ L S
Sbjct: 516 WEIDADNGDILNSM 529
Score = 35.0 bits (79), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 718 TQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQ---GDQWVSYEDPTSLTEKVKFIK 774
T + G++ Y +I + + +W + + P+ F+ GD ++++D S+ K K++
Sbjct: 448 TWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD-LITFDDARSVQAKGKYVL 506
Query: 775 SNGYAGIMAWTIDLDD 790
G+ +W ID D+
Sbjct: 507 DKQLGGLFSWEIDADN 522
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed With
Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 156/355 (43%), Gaps = 44/355 (12%)
Query: 1747 FAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVN 1804
FA L Q K W D + ++ ALK+ +K+ +IGGW S +
Sbjct: 209 FAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMG 262
Query: 1805 SQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAA 1863
+ R +F+ V F+ F DG+D+DWE+P + G D + + L+KELRA
Sbjct: 263 DKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAM 322
Query: 1864 FNPHDL------LLSAAVSPSKAVIDN-AYDIPVMSENLDWISVMTYDYHGQWD-KKTGH 1915
+ + L++A+S K ID AY+ V ++D I +M++D++G +D K GH
Sbjct: 323 LDQLSVETGRKYELTSAISAGKDKIDKVAYN--VAQNSMDHIFLMSFDFYGAFDLKNLGH 380
Query: 1916 VAPMYA---LPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNS 1972
+ A P+ T N +L ++ G K++ G MYG+ +T + +N +
Sbjct: 381 QTALNAPAWKPDTAYTTVNGVNAL---LAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI-- 435
Query: 1973 QTYGGAEAG--ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK---GDQWVGF 2027
+ G G + T G + Y +I + W D PY FK GD + F
Sbjct: 436 -PFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAE-APYVFKPSTGD-LITF 492
Query: 2028 DDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKNFCGCESYPLLKTINRVLRNYPG 2082
DD + K ++V LGG W +D D+ +L ++N L N G
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADNGD---------ILNSMNASLGNSAG 538
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 142/334 (42%), Gaps = 45/334 (13%)
Query: 49 YAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKSNFVS----ITSDRE 104
+AA+ + + D Y KG + + LK+A+P+LK+ ++ +S D+
Sbjct: 209 FAALQKAQKGVTAWDDPY---KGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKV 265
Query: 105 SRLNFISSVLEMFDMYKF-DGLDLNVKDPAL-----NXXXXXXLESIANERSDFSTFIQE 158
R F+ SV E +KF DG+D++ + P N E+ + + +
Sbjct: 266 KRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQ 325
Query: 159 LSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF---------NNDHMDD 209
LS R Y+LT D K V +V +D I L SF N H
Sbjct: 326 LSVETGRK-YELTSAISAGKD-KIDKVAYNVAQNSMDHIFLMSFDFYGAFDLKNLGHQTA 383
Query: 210 EVVPV-KPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFN-- 266
P KP+T +T+ N + + +G +P +I++G +G+ + N
Sbjct: 384 LNAPAWKPDT-----AYTTVNGVNAL-------LAQGVKPGKIVVGTAMYGRGWTGVNGY 431
Query: 267 RSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGE-PFMVK--KDE 323
++ T GP K T G + + ++ +F W++ D+ E P++ K +
Sbjct: 432 QNNIPFTGTATGPV---KGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD 488
Query: 324 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 357
IT+++ S++ K Y+ D+ LGG W +D D+
Sbjct: 489 LITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 22/197 (11%)
Query: 1404 YERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DG 1460
+ +++ LK+ +K+ +IGGW S + R RF+ V +FL ++F DG
Sbjct: 230 FGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMGDKVKRDRFVGSVKEFLQTWKFFDG 286
Query: 1461 LDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGL------LLSAAVSPSKQV 1514
+D+DWE+P N + G D E++ L ++EL + L++A+S K
Sbjct: 287 VDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDK 346
Query: 1515 IN-AAYDVKALSESLDWISVMTYDYHGQWD-KKTGHVAPLYE---HPDDDFFYFNANFTM 1569
I+ AY+V S+D I +M++D++G +D K GH L PD + N +
Sbjct: 347 IDKVAYNVA--QNSMDHIFLMSFDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNG---V 401
Query: 1570 NYWMKKGAPSRKLVMGV 1586
N + +G K+V+G
Sbjct: 402 NALLAQGVKPGKIVVGT 418
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 94/193 (48%), Gaps = 14/193 (7%)
Query: 453 THGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDF-AGLHFDWNYPV 511
H +KIL +IGGWT S + + R +F+ SV FL+ + F G+ DW +P
Sbjct: 239 AHPDLKILPSIGGWTLSDPFFF---MGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPG 295
Query: 512 CWQADCSKQHKADKGNFVKLIQELKAEFDK------HDYSIAVGIS-GYKEILEVAYDFP 564
A+ + D +V L++EL+A D+ Y + IS G +I +VAY+
Sbjct: 296 GKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYNVA 355
Query: 565 ALNDHVEFMSLMSYDYHGAWE-GITGLVSPLNSRPGEPYPNYNINTALKLIDELGGDKRK 623
+ ++ + LMS+D++GA++ G + LN+ +P Y + + G K
Sbjct: 356 --QNSMDHIFLMSFDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGK 413
Query: 624 IVIGVPFYGQSYT 636
IV+G YG+ +T
Sbjct: 414 IVVGTAMYGRGWT 426
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 2318 QTCSTVKSHEWTVVRDSLGARGPYAY---NGKLWLSYDDTRDIRRKCKSIKQDGLGGAMV 2374
Q S EW D+ A PY + G L +++DD R ++ K K + LGG
Sbjct: 458 QIAGQFMSGEWQYTYDAT-AEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFS 515
Query: 2375 WSIDLDDFQNLCSCGPYPLLSAVNYELRNTT 2405
W ID D+ +L+++N L N+
Sbjct: 516 WEIDADNGD---------ILNSMNASLGNSA 537
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 718 TQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQ---GDQWVSYEDPTSLTEKVKFIK 774
T + G++ Y +I + + +W + + P+ F+ GD ++++D S+ K K++
Sbjct: 448 TWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD-LITFDDARSVQAKGKYVL 506
Query: 775 SNGYAGIMAWTIDLDD 790
G+ +W ID D+
Sbjct: 507 DKQLGGLFSWEIDADN 522
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed With
Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 156/355 (43%), Gaps = 44/355 (12%)
Query: 1747 FAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVN 1804
FA L Q K W D + ++ ALK+ +K+ +IGGW S +
Sbjct: 209 FAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMG 262
Query: 1805 SQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAA 1863
+ R +F+ V F+ F DG+D+DW++P + G D + + L+KELRA
Sbjct: 263 DKVKRDRFVGSVKEFLQTWKFFDGVDIDWQFPGGKGANPNLGSPQDGETYVLLMKELRAM 322
Query: 1864 FNPHDL------LLSAAVSPSKAVIDN-AYDIPVMSENLDWISVMTYDYHGQWD-KKTGH 1915
+ + L++A+S K ID AY+ V ++D I +M+YD++G +D K GH
Sbjct: 323 LDQLSVETGRKYELTSAISAGKDKIDKVAYN--VAQNSMDHIFLMSYDFYGAFDLKNLGH 380
Query: 1916 VAPMYA---LPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNS 1972
+ A P+ T N +L ++ G K++ G MYG+ +T + +N +
Sbjct: 381 QTALNAPAWKPDTAYTTVNGVNAL---LAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI-- 435
Query: 1973 QTYGGAEAG--ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK---GDQWVGF 2027
+ G G + T G + Y +I + W D PY FK GD + F
Sbjct: 436 -PFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAE-APYVFKPSTGD-LITF 492
Query: 2028 DDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKNFCGCESYPLLKTINRVLRNYPG 2082
DD + K ++V LGG W +D D+ +L ++N L N G
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADNGD---------ILNSMNASLGNSAG 538
Score = 73.9 bits (180), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 142/334 (42%), Gaps = 45/334 (13%)
Query: 49 YAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKSNFVS----ITSDRE 104
+AA+ + + D Y KG + + LK+A+P+LK+ ++ +S D+
Sbjct: 209 FAALQKAQKGVTAWDDPY---KGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKV 265
Query: 105 SRLNFISSVLEMFDMYKF-DGLDLNVKDPAL-----NXXXXXXLESIANERSDFSTFIQE 158
R F+ SV E +KF DG+D++ + P N E+ + + +
Sbjct: 266 KRDRFVGSVKEFLQTWKFFDGVDIDWQFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQ 325
Query: 159 LSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF---------NNDHMDD 209
LS R Y+LT D K V +V +D I L S+ N H
Sbjct: 326 LSVETGRK-YELTSAISAGKD-KIDKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTA 383
Query: 210 EVVPV-KPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFN-- 266
P KP+T +T+ N + + +G +P +I++G +G+ + N
Sbjct: 384 LNAPAWKPDT-----AYTTVNGVNAL-------LAQGVKPGKIVVGTAMYGRGWTGVNGY 431
Query: 267 RSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGE-PFMVK--KDE 323
++ T GP K T G + + ++ +F W++ D+ E P++ K +
Sbjct: 432 QNNIPFTGTATGPV---KGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD 488
Query: 324 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 357
IT+++ S++ K Y+ D+ LGG W +D D+
Sbjct: 489 LITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 14/193 (7%)
Query: 453 THGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDF-AGLHFDWNYPV 511
H +KIL +IGGWT S + + R +F+ SV FL+ + F G+ DW +P
Sbjct: 239 AHPDLKILPSIGGWTLSDPFFF---MGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWQFPG 295
Query: 512 CWQADCSKQHKADKGNFVKLIQELKAEFDK------HDYSIAVGIS-GYKEILEVAYDFP 564
A+ + D +V L++EL+A D+ Y + IS G +I +VAY+
Sbjct: 296 GKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYNVA 355
Query: 565 ALNDHVEFMSLMSYDYHGAWE-GITGLVSPLNSRPGEPYPNYNINTALKLIDELGGDKRK 623
+ ++ + LMSYD++GA++ G + LN+ +P Y + + G K
Sbjct: 356 --QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGK 413
Query: 624 IVIGVPFYGQSYT 636
IV+G YG+ +T
Sbjct: 414 IVVGTAMYGRGWT 426
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 22/197 (11%)
Query: 1404 YERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DG 1460
+ +++ LK+ +K+ +IGGW S + R RF+ V +FL ++F DG
Sbjct: 230 FGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMGDKVKRDRFVGSVKEFLQTWKFFDG 286
Query: 1461 LDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGL------LLSAAVSPSKQV 1514
+D+DW++P N + G D E++ L ++EL + L++A+S K
Sbjct: 287 VDIDWQFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDK 346
Query: 1515 IN-AAYDVKALSESLDWISVMTYDYHGQWD-KKTGHVAPLYE---HPDDDFFYFNANFTM 1569
I+ AY+V S+D I +M+YD++G +D K GH L PD + N +
Sbjct: 347 IDKVAYNVA--QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNG---V 401
Query: 1570 NYWMKKGAPSRKLVMGV 1586
N + +G K+V+G
Sbjct: 402 NALLAQGVKPGKIVVGT 418
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 2318 QTCSTVKSHEWTVVRDSLGARGPYAY---NGKLWLSYDDTRDIRRKCKSIKQDGLGGAMV 2374
Q S EW D+ A PY + G L +++DD R ++ K K + LGG
Sbjct: 458 QIAGQFMSGEWQYTYDAT-AEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFS 515
Query: 2375 WSIDLDDFQNLCSC 2388
W ID D+ L S
Sbjct: 516 WEIDADNGDILNSM 529
Score = 35.0 bits (79), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 718 TQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQ---GDQWVSYEDPTSLTEKVKFIK 774
T + G++ Y +I + + +W + + P+ F+ GD ++++D S+ K K++
Sbjct: 448 TWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD-LITFDDARSVQAKGKYVL 506
Query: 775 SNGYAGIMAWTIDLDD 790
G+ +W ID D+
Sbjct: 507 DKQLGGLFSWEIDADN 522
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex With
Hexasaccharide
Length = 540
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 155/355 (43%), Gaps = 44/355 (12%)
Query: 1747 FAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVN 1804
FA L Q K W D + ++ ALK+ +K+ +IGGW S +
Sbjct: 209 FAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMG 262
Query: 1805 SQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAA 1863
+ R +F+ V F+ F DG+D+DW +P + G D + + L+KELRA
Sbjct: 263 DKVKRDRFVGSVKEFLQTWKFFDGVDIDWLFPGGKGANPNLGSPQDGETYVLLMKELRAM 322
Query: 1864 FNPHDL------LLSAAVSPSKAVIDN-AYDIPVMSENLDWISVMTYDYHGQWD-KKTGH 1915
+ + L++A+S K ID AY+ V ++D I +M+YD++G +D K GH
Sbjct: 323 LDQLSVETGRKYELTSAISAGKDKIDKVAYN--VAQNSMDHIFLMSYDFYGAFDLKNLGH 380
Query: 1916 VAPMYA---LPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNS 1972
+ A P+ T N +L ++ G K++ G MYG+ +T + +N +
Sbjct: 381 QTALNAPAWKPDTAYTTVNGVNAL---LAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI-- 435
Query: 1973 QTYGGAEAG--ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK---GDQWVGF 2027
+ G G + T G + Y +I + W D PY FK GD + F
Sbjct: 436 -PFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQYTYDATAE-APYVFKPSTGD-LITF 492
Query: 2028 DDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKNFCGCESYPLLKTINRVLRNYPG 2082
DD + K ++V LGG W +D D+ +L ++N L N G
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADNGD---------ILNSMNASLGNSAG 538
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 142/334 (42%), Gaps = 45/334 (13%)
Query: 49 YAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKSNFVS----ITSDRE 104
+AA+ + + D Y KG + + LK+A+P+LK+ ++ +S D+
Sbjct: 209 FAALQKAQKGVTAWDDPY---KGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKV 265
Query: 105 SRLNFISSVLEMFDMYKF-DGLDLN-----VKDPALNXXXXXXLESIANERSDFSTFIQE 158
R F+ SV E +KF DG+D++ K N E+ + + +
Sbjct: 266 KRDRFVGSVKEFLQTWKFFDGVDIDWLFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQ 325
Query: 159 LSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF---------NNDHMDD 209
LS R Y+LT D K V +V +D I L S+ N H
Sbjct: 326 LSVETGRK-YELTSAISAGKD-KIDKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTA 383
Query: 210 EVVPV-KPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFN-- 266
P KP+T +T+ N + + +G +P +I++G +G+ + N
Sbjct: 384 LNAPAWKPDT-----AYTTVNGVNAL-------LAQGVKPGKIVVGTAMYGRGWTGVNGY 431
Query: 267 RSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGE-PFMVK--KDE 323
++ T GP K T G + + ++ ++F W++ D+ E P++ K +
Sbjct: 432 QNNIPFTGTATGPV---KGTWENGIVDYRQIASQFMSGEWQYTYDATAEAPYVFKPSTGD 488
Query: 324 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 357
IT+++ S++ K Y+ D+ LGG W +D D+
Sbjct: 489 LITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 14/193 (7%)
Query: 453 THGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDF-AGLHFDWNYPV 511
H +KIL +IGGWT S + + R +F+ SV FL+ + F G+ DW +P
Sbjct: 239 AHPDLKILPSIGGWTLSDPFFF---MGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWLFPG 295
Query: 512 CWQADCSKQHKADKGNFVKLIQELKAEFDK------HDYSIAVGIS-GYKEILEVAYDFP 564
A+ + D +V L++EL+A D+ Y + IS G +I +VAY+
Sbjct: 296 GKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYNVA 355
Query: 565 ALNDHVEFMSLMSYDYHGAWE-GITGLVSPLNSRPGEPYPNYNINTALKLIDELGGDKRK 623
+ ++ + LMSYD++GA++ G + LN+ +P Y + + G K
Sbjct: 356 --QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGK 413
Query: 624 IVIGVPFYGQSYT 636
IV+G YG+ +T
Sbjct: 414 IVVGTAMYGRGWT 426
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 95/197 (48%), Gaps = 22/197 (11%)
Query: 1404 YERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DG 1460
+ +++ LK+ +K+ +IGGW S + R RF+ V +FL ++F DG
Sbjct: 230 FGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMGDKVKRDRFVGSVKEFLQTWKFFDG 286
Query: 1461 LDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGL------LLSAAVSPSKQV 1514
+D+DW +P N + G D E++ L ++EL + L++A+S K
Sbjct: 287 VDIDWLFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDK 346
Query: 1515 IN-AAYDVKALSESLDWISVMTYDYHGQWD-KKTGHVAPLYE---HPDDDFFYFNANFTM 1569
I+ AY+V S+D I +M+YD++G +D K GH L PD + N +
Sbjct: 347 IDKVAYNVA--QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNG---V 401
Query: 1570 NYWMKKGAPSRKLVMGV 1586
N + +G K+V+G
Sbjct: 402 NALLAQGVKPGKIVVGT 418
Score = 38.1 bits (87), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 2318 QTCSTVKSHEWTVVRDSLGARGPYAY---NGKLWLSYDDTRDIRRKCKSIKQDGLGGAMV 2374
Q S S EW D+ A PY + G L +++DD R ++ K K + LGG
Sbjct: 458 QIASQFMSGEWQYTYDAT-AEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFS 515
Query: 2375 WSIDLDDFQNLCSC 2388
W ID D+ L S
Sbjct: 516 WEIDADNGDILNSM 529
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 718 TQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQ---GDQWVSYEDPTSLTEKVKFIK 774
T + G++ Y +I + + +W + + P+ F+ GD ++++D S+ K K++
Sbjct: 448 TWENGIVDYRQIASQFMSGEWQYTYDATAEAPYVFKPSTGD-LITFDDARSVQAKGKYVL 506
Query: 775 SNGYAGIMAWTIDLDD 790
G+ +W ID D+
Sbjct: 507 DKQLGGLFSWEIDADN 522
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed With
Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 155/355 (43%), Gaps = 44/355 (12%)
Query: 1747 FAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVN 1804
FA L Q K W D + ++ ALK+ +K+ +IGGW S +
Sbjct: 209 FAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMG 262
Query: 1805 SQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAA 1863
+ R +F+ V F+ F DG+D+ WE+P + G D + + L+KELRA
Sbjct: 263 DKVKRDRFVGSVKEFLQTWKFFDGVDIAWEFPGGKGANPNLGSPQDGETYVLLMKELRAM 322
Query: 1864 FNPHDL------LLSAAVSPSKAVIDN-AYDIPVMSENLDWISVMTYDYHGQWD-KKTGH 1915
+ + L++A+S K ID AY+ V ++D I +M+YD++G +D K GH
Sbjct: 323 LDQLSVETGRKYELTSAISAGKDKIDKVAYN--VAQNSMDHIFLMSYDFYGAFDLKNLGH 380
Query: 1916 VAPMYA---LPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNS 1972
+ A P+ T N +L ++ G K++ G MYG+ +T + +N +
Sbjct: 381 QTALNAPAWKPDTAYTTVNGVNAL---LAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI-- 435
Query: 1973 QTYGGAEAG--ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK---GDQWVGF 2027
+ G G + T G + Y +I + W D PY FK GD + F
Sbjct: 436 -PFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAE-APYVFKPSTGD-LITF 492
Query: 2028 DDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKNFCGCESYPLLKTINRVLRNYPG 2082
DD + K ++V LGG W +D D+ +L ++N L N G
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADNGD---------ILNSMNASLGNSAG 538
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 141/334 (42%), Gaps = 45/334 (13%)
Query: 49 YAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKSNFVS----ITSDRE 104
+AA+ + + D Y KG + + LK+A+P+LK+ ++ +S D+
Sbjct: 209 FAALQKAQKGVTAWDDPY---KGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKV 265
Query: 105 SRLNFISSVLEMFDMYKF-DGLDLNVKDPAL-----NXXXXXXLESIANERSDFSTFIQE 158
R F+ SV E +KF DG+D+ + P N E+ + + +
Sbjct: 266 KRDRFVGSVKEFLQTWKFFDGVDIAWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQ 325
Query: 159 LSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF---------NNDHMDD 209
LS R Y+LT D K V +V +D I L S+ N H
Sbjct: 326 LSVETGRK-YELTSAISAGKD-KIDKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTA 383
Query: 210 EVVPV-KPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFN-- 266
P KP+T +T+ N + + +G +P +I++G +G+ + N
Sbjct: 384 LNAPAWKPDT-----AYTTVNGVNAL-------LAQGVKPGKIVVGTAMYGRGWTGVNGY 431
Query: 267 RSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGE-PFMVK--KDE 323
++ T GP K T G + + ++ +F W++ D+ E P++ K +
Sbjct: 432 QNNIPFTGTATGPV---KGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD 488
Query: 324 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 357
IT+++ S++ K Y+ D+ LGG W +D D+
Sbjct: 489 LITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 95/197 (48%), Gaps = 22/197 (11%)
Query: 1404 YERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DG 1460
+ +++ LK+ +K+ +IGGW S + R RF+ V +FL ++F DG
Sbjct: 230 FGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMGDKVKRDRFVGSVKEFLQTWKFFDG 286
Query: 1461 LDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGL------LLSAAVSPSKQV 1514
+D+ WE+P N + G D E++ L ++EL + L++A+S K
Sbjct: 287 VDIAWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDK 346
Query: 1515 IN-AAYDVKALSESLDWISVMTYDYHGQWD-KKTGHVAPLYE---HPDDDFFYFNANFTM 1569
I+ AY+V S+D I +M+YD++G +D K GH L PD + N +
Sbjct: 347 IDKVAYNVA--QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNG---V 401
Query: 1570 NYWMKKGAPSRKLVMGV 1586
N + +G K+V+G
Sbjct: 402 NALLAQGVKPGKIVVGT 418
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 93/193 (48%), Gaps = 14/193 (7%)
Query: 453 THGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFD-FAGLHFDWNYPV 511
H +KIL +IGGWT S + + R +F+ SV FL+ + F G+ W +P
Sbjct: 239 AHPDLKILPSIGGWTLSDPFFF---MGDKVKRDRFVGSVKEFLQTWKFFDGVDIAWEFPG 295
Query: 512 CWQADCSKQHKADKGNFVKLIQELKAEFDK------HDYSIAVGIS-GYKEILEVAYDFP 564
A+ + D +V L++EL+A D+ Y + IS G +I +VAY+
Sbjct: 296 GKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYNVA 355
Query: 565 ALNDHVEFMSLMSYDYHGAWE-GITGLVSPLNSRPGEPYPNYNINTALKLIDELGGDKRK 623
+ ++ + LMSYD++GA++ G + LN+ +P Y + + G K
Sbjct: 356 --QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGK 413
Query: 624 IVIGVPFYGQSYT 636
IV+G YG+ +T
Sbjct: 414 IVVGTAMYGRGWT 426
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 2318 QTCSTVKSHEWTVVRDSLGARGPYAY---NGKLWLSYDDTRDIRRKCKSIKQDGLGGAMV 2374
Q S EW D+ A PY + G L +++DD R ++ K K + LGG
Sbjct: 458 QIAGQFMSGEWQYTYDAT-AEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFS 515
Query: 2375 WSIDLDDFQNLCSC 2388
W ID D+ L S
Sbjct: 516 WEIDADNGDILNSM 529
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 2261 IQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLEFYGF-NGLEFAWEYP 2314
++++ +IGGW+ SD + + D R FV V EFL+ + F +G++ AWE+P
Sbjct: 243 LKILPSIGGWT--LSDPF-FFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIAWEFP 294
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 718 TQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQ---GDQWVSYEDPTSLTEKVKFIK 774
T + G++ Y +I + + +W + + P+ F+ GD ++++D S+ K K++
Sbjct: 448 TWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD-LITFDDARSVQAKGKYVL 506
Query: 775 SNGYAGIMAWTIDLDD 790
G+ +W ID D+
Sbjct: 507 DKQLGGLFSWEIDADN 522
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 155/355 (43%), Gaps = 44/355 (12%)
Query: 1747 FAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVN 1804
FA L Q K W D + ++ ALK+ +K+ +IGGW S +
Sbjct: 209 FAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMG 262
Query: 1805 SQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAA 1863
+ R +F+ V F+ F DG+D+DWE+P + G D + + L+KELRA
Sbjct: 263 DKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAM 322
Query: 1864 FNPHDL------LLSAAVSPSKAVIDN-AYDIPVMSENLDWISVMTYDYHGQWD-KKTGH 1915
+ + L++A+S K ID AY+ V ++D I +M+Y ++G +D K GH
Sbjct: 323 LDQLSVETGRKYELTSAISAGKDKIDKVAYN--VAQNSMDHIFLMSYAFYGAFDLKNLGH 380
Query: 1916 VAPMYA---LPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNS 1972
+ A P+ T N +L ++ G K++ G MYG+ +T + +N +
Sbjct: 381 QTALNAPAWKPDTAYTTVNGVNAL---LAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI-- 435
Query: 1973 QTYGGAEAG--ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK---GDQWVGF 2027
+ G G + T G + Y +I + W D PY FK GD + F
Sbjct: 436 -PFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAE-APYVFKPSTGD-LITF 492
Query: 2028 DDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKNFCGCESYPLLKTINRVLRNYPG 2082
DD + K ++V LGG W +D D+ +L ++N L N G
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADNGD---------ILNSMNASLGNSAG 538
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 142/334 (42%), Gaps = 45/334 (13%)
Query: 49 YAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKSNFVS----ITSDRE 104
+AA+ + + D Y KG + + LK+A+P+LK+ ++ +S D+
Sbjct: 209 FAALQKAQKGVTAWDDPY---KGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKV 265
Query: 105 SRLNFISSVLEMFDMYKF-DGLDLNVKDPAL-----NXXXXXXLESIANERSDFSTFIQE 158
R F+ SV E +KF DG+D++ + P N E+ + + +
Sbjct: 266 KRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQ 325
Query: 159 LSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF---------NNDHMDD 209
LS R Y+LT D K V +V +D I L S+ N H
Sbjct: 326 LSVETGRK-YELTSAISAGKD-KIDKVAYNVAQNSMDHIFLMSYAFYGAFDLKNLGHQTA 383
Query: 210 EVVPV-KPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFN-- 266
P KP+T +T+ N + + +G +P +I++G +G+ + N
Sbjct: 384 LNAPAWKPDT-----AYTTVNGVNAL-------LAQGVKPGKIVVGTAMYGRGWTGVNGY 431
Query: 267 RSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGE-PFMVK--KDE 323
++ T GP K T G + + ++ +F W++ D+ E P++ K +
Sbjct: 432 QNNIPFTGTATGPV---KGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD 488
Query: 324 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 357
IT+++ S++ K Y+ D+ LGG W +D D+
Sbjct: 489 LITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 95/197 (48%), Gaps = 22/197 (11%)
Query: 1404 YERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DG 1460
+ +++ LK+ +K+ +IGGW S + R RF+ V +FL ++F DG
Sbjct: 230 FGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMGDKVKRDRFVGSVKEFLQTWKFFDG 286
Query: 1461 LDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGL------LLSAAVSPSKQV 1514
+D+DWE+P N + G D E++ L ++EL + L++A+S K
Sbjct: 287 VDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDK 346
Query: 1515 IN-AAYDVKALSESLDWISVMTYDYHGQWD-KKTGHVAPLYE---HPDDDFFYFNANFTM 1569
I+ AY+V S+D I +M+Y ++G +D K GH L PD + N +
Sbjct: 347 IDKVAYNVA--QNSMDHIFLMSYAFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNG---V 401
Query: 1570 NYWMKKGAPSRKLVMGV 1586
N + +G K+V+G
Sbjct: 402 NALLAQGVKPGKIVVGT 418
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 93/193 (48%), Gaps = 14/193 (7%)
Query: 453 THGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDF-AGLHFDWNYPV 511
H +KIL +IGGWT S + + R +F+ SV FL+ + F G+ DW +P
Sbjct: 239 AHPDLKILPSIGGWTLSDPFFF---MGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPG 295
Query: 512 CWQADCSKQHKADKGNFVKLIQELKAEFDK------HDYSIAVGIS-GYKEILEVAYDFP 564
A+ + D +V L++EL+A D+ Y + IS G +I +VAY+
Sbjct: 296 GKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYNVA 355
Query: 565 ALNDHVEFMSLMSYDYHGAWE-GITGLVSPLNSRPGEPYPNYNINTALKLIDELGGDKRK 623
+ ++ + LMSY ++GA++ G + LN+ +P Y + + G K
Sbjct: 356 --QNSMDHIFLMSYAFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGK 413
Query: 624 IVIGVPFYGQSYT 636
IV+G YG+ +T
Sbjct: 414 IVVGTAMYGRGWT 426
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 2318 QTCSTVKSHEWTVVRDSLGARGPYAY---NGKLWLSYDDTRDIRRKCKSIKQDGLGGAMV 2374
Q S EW D+ A PY + G L +++DD R ++ K K + LGG
Sbjct: 458 QIAGQFMSGEWQYTYDAT-AEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFS 515
Query: 2375 WSIDLDDFQNLCSC 2388
W ID D+ L S
Sbjct: 516 WEIDADNGDILNSM 529
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 718 TQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQ---GDQWVSYEDPTSLTEKVKFIK 774
T + G++ Y +I + + +W + + P+ F+ GD ++++D S+ K K++
Sbjct: 448 TWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD-LITFDDARSVQAKGKYVL 506
Query: 775 SNGYAGIMAWTIDLDD 790
G+ +W ID D+
Sbjct: 507 DKQLGGLFSWEIDADN 522
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 94.0 bits (232), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 89/361 (24%), Positives = 144/361 (39%), Gaps = 104/361 (28%)
Query: 1773 KVTALKKK--GVKVTLAIGGW--NDSAGNKYSRLVNSQQ---ARSKFIAHVVNFILEHNF 1825
++TALK +++ +IGGW ++ G ++ VN+ + +R+KF V + ++ F
Sbjct: 77 RLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGF 136
Query: 1826 DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNA 1885
DG+D+DWEYP+ +VD GF ++E+R N + P + I A
Sbjct: 137 DGVDIDWEYPQAAEVD----------GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGA 186
Query: 1886 YDIPVMSE----------NLDWISVMTYDYHGQWDKKTGHVAPMY--------------- 1920
+S LD+I++MTYD G W+K T H A ++
Sbjct: 187 GGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREA 246
Query: 1921 -----------ALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNG 1969
A P+ + T +A H + G K++ G+P YG++F K +G
Sbjct: 247 NLGWSWEELTRAFPSPFSLTVDAAVQQHL-MMEGVPSAKIVMGVPFYGRAF----KGVSG 301
Query: 1970 LNSQTYGG-AEAGENTRARGFLAYYEICDKIQKDGWVV-----VRDRKRRIG-------- 2015
N Y + GE+ D W+V VRD+ RI
Sbjct: 302 GNGGQYSSHSTPGEDPYP-------------STDYWLVGCEECVRDKDPRIASYRQLEQM 348
Query: 2016 -----------------PYAFKGDQ--WVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 2056
PY + +V +DD +KA+++K LGG M W L D
Sbjct: 349 LQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQD 408
Query: 2057 D 2057
+
Sbjct: 409 N 409
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 102/244 (41%), Gaps = 53/244 (21%)
Query: 1406 RVVTLKKK--GVKVSLAIGGW--NDSLGGKYSRLVNSA---TARQRFIEHVVKFLLKYQF 1458
R+ LK +++ +IGGW ++ LG ++ VN+ +R +F + V+ + Y F
Sbjct: 77 RLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGF 136
Query: 1459 DGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAA 1518
DG+D+DWEYP +V + F ++E+ + P + I A
Sbjct: 137 DGVDIDWEYPQAAEV----------DGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGA 186
Query: 1519 YDVKALSE----------SLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFY------ 1562
LS LD+I++MTYD G W+K T H A L+ FY
Sbjct: 187 GGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREA 246
Query: 1563 ------------FNANFTM-------NYWMKKGAPSRKLVMGVHPLLSTITEVLGHGPGG 1603
F + F++ + M +G PS K+VMGV P + + G GG
Sbjct: 247 NLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGV-PFYGRAFKGVSGGNGG 305
Query: 1604 NYES 1607
Y S
Sbjct: 306 QYSS 309
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 101/450 (22%), Positives = 176/450 (39%), Gaps = 118/450 (26%)
Query: 410 KLCTHIVYAFASLDPNT-LSIQAGNPEADIDDNFYQRISSSPLVTHG-KVKILIAIGGWT 467
K THI ++F ++ N + +A D R+++ L H ++I+ +IGGW
Sbjct: 42 KQLTHINFSFLDINSNLECAWDPATNDAKARD-VVNRLTA--LKAHNPSLRIMFSIGGWY 98
Query: 468 DS-----SGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHK 522
S S Y + + ++R KF +S + ++ + F G+ DW YP + D
Sbjct: 99 YSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQAAEVD------ 152
Query: 523 ADKGNFVKLIQELKAEFDKHD---------YSIAVGISGYKEILEVAYD-FPALNDHVEF 572
F+ +QE++ ++ Y + + +G L Y + +++
Sbjct: 153 ----GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDY 208
Query: 573 MSLMSYDYHGAWEGITGLVSPLNSRPGEP---------------------YP---NYNIN 608
++LM+YD G WE +T + L P +P + ++
Sbjct: 209 INLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVD 268
Query: 609 TALK--LIDELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQ--PGM 664
A++ L+ E G KIV+GVPFYG+++ G+ G G+Y+ PG
Sbjct: 269 AAVQQHLMME-GVPSAKIVMGVPFYGRAF-------KGVSG-----GNGGQYSSHSTPGE 315
Query: 665 LAYYEICYRIKTRKWTV--QRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPG 722
Y Y W V + + +PR +L++ L G Y Q
Sbjct: 316 DPYPSTDY------WLVGCEECVRDKDPRIASYRQLEQM-----------LQGNYGYQ-- 356
Query: 723 MLAYYEICYRIKTRKWTVQRNTKSLEPFTF--QGDQWVSYEDPTSLTEKVKFIKSNGYAG 780
R W N K+ P+ + Q +V+Y+D S K K+IK G
Sbjct: 357 -------------RLW----NDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGG 399
Query: 781 IMAWTIDLDDFHNKCCMESFPLLRAVNRAF 810
+M W + D+ + LL A++R F
Sbjct: 400 VMFWHLGQDNRNGD-------LLAALDRYF 422
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 90/405 (22%), Positives = 161/405 (39%), Gaps = 99/405 (24%)
Query: 32 FNVKNVIP---QTCTHVIYAYAAI--------DPVSRALIPEDLEYDVIKGGYKSFLGLK 80
F V N+ P + TH+ +++ I DP + D+ LK
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDV--------VNRLTALK 82
Query: 81 EANPELKVYLAV------------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLN 128
NP L++ ++ +N+V+ SR F S + + Y FDG+D++
Sbjct: 83 AHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDID 142
Query: 129 VKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNN---------YQLTLTSPG--- 176
+ P A E F +QE+ + L + YQLT+ G
Sbjct: 143 WEYPQ------------AAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAF 190
Query: 177 VIDRKTSLVDISVVAPLVDLILLKSFN--------NDH----MDDEVVPVKPNT--KVNI 222
+ R S + +VAPL D I L +++ +H D P N + N+
Sbjct: 191 FLSRYYSKL-AQIVAPL-DYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANL 248
Query: 223 -----QVTSTIAN-FN-NIESAVY-NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGA 274
++T + F+ +++AV + + +G +I++G+PF+G++++ + G +
Sbjct: 249 GWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYS 308
Query: 275 TVKGPGTEGKYTQMPGYLAFFEVCNKFKDKT-----------------WRHFTDSNGEPF 317
+ PG E Y +L E C + KD R + D P+
Sbjct: 309 SHSTPG-EDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPY 367
Query: 318 M--VKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRG 360
+ + ++TY++ +S + K YIK + LGG M W L D+ G
Sbjct: 368 LYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNG 412
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 2338 RGPYAYNGK--LWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDD 2381
+ PY Y+ + L+++YDD + K K IKQ LGG M W + D+
Sbjct: 364 KTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 2255 KFNERGIQVILAIGGW--SDSRSDKYSRLVNDI--PARR-NFVRHVTEFLEFYGFNGLEF 2309
K + ++++ +IGGW S+ ++ VN + PA R F + ++ YGF+G++
Sbjct: 82 KAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDI 141
Query: 2310 AWEYPKC 2316
WEYP+
Sbjct: 142 DWEYPQA 148
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 94.0 bits (232), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 89/361 (24%), Positives = 144/361 (39%), Gaps = 104/361 (28%)
Query: 1773 KVTALKKK--GVKVTLAIGGW--NDSAGNKYSRLVNSQQ---ARSKFIAHVVNFILEHNF 1825
++TALK +++ +IGGW ++ G ++ VN+ + +R+KF V + ++ F
Sbjct: 77 RLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRTKFAQSCVRIMKDYGF 136
Query: 1826 DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNA 1885
DG+D+DWEYP+ +VD GF ++E+R N + P + I A
Sbjct: 137 DGVDIDWEYPQAAEVD----------GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGA 186
Query: 1886 YDIPVMSE----------NLDWISVMTYDYHGQWDKKTGHVAPMY--------------- 1920
+S LD+I++MTYD G W+K T H A ++
Sbjct: 187 GGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREA 246
Query: 1921 -----------ALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNG 1969
A P+ + T +A H + G K++ G+P YG++F K +G
Sbjct: 247 NLGWSWEELTRAFPSPFSLTVDAAVQQHL-MMEGVPSAKIVMGVPFYGRAF----KGVSG 301
Query: 1970 LNSQTYGG-AEAGENTRARGFLAYYEICDKIQKDGWVV-----VRDRKRRIG-------- 2015
N Y + GE+ D W+V VRD+ RI
Sbjct: 302 GNGGQYSSHSTPGEDPYP-------------STDYWLVGCEECVRDKDPRIASYRQLEQM 348
Query: 2016 -----------------PYAFKGDQ--WVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 2056
PY + +V +DD +KA+++K LGG M W L D
Sbjct: 349 LQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQD 408
Query: 2057 D 2057
+
Sbjct: 409 N 409
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 102/244 (41%), Gaps = 53/244 (21%)
Query: 1406 RVVTLKKK--GVKVSLAIGGW--NDSLGGKYSRLVNSA---TARQRFIEHVVKFLLKYQF 1458
R+ LK +++ +IGGW ++ LG ++ VN+ +R +F + V+ + Y F
Sbjct: 77 RLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRTKFAQSCVRIMKDYGF 136
Query: 1459 DGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAA 1518
DG+D+DWEYP +V + F ++E+ + P + I A
Sbjct: 137 DGVDIDWEYPQAAEV----------DGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGA 186
Query: 1519 YDVKALSE----------SLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFY------ 1562
LS LD+I++MTYD G W+K T H A L+ FY
Sbjct: 187 GGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREA 246
Query: 1563 ------------FNANFTM-------NYWMKKGAPSRKLVMGVHPLLSTITEVLGHGPGG 1603
F + F++ + M +G PS K+VMGV P + + G GG
Sbjct: 247 NLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGV-PFYGRAFKGVSGGNGG 305
Query: 1604 NYES 1607
Y S
Sbjct: 306 QYSS 309
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 90/401 (22%), Positives = 156/401 (38%), Gaps = 113/401 (28%)
Query: 457 VKILIAIGGWTDS-----SGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPV 511
++I+ +IGGW S S Y + + ++R KF +S + ++ + F G+ DW YP
Sbjct: 88 LRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRTKFAQSCVRIMKDYGFDGVDIDWEYPQ 147
Query: 512 CWQADCSKQHKADKGNFVKLIQELKAEFDKHD---------YSIAVGISGYKEILEVAYD 562
+ D F+ +QE++ ++ Y + + +G L Y
Sbjct: 148 AAEVD----------GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYS 197
Query: 563 -FPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEP-------------------- 601
+ +++++LM+YD G WE +T + L P
Sbjct: 198 KLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTR 257
Query: 602 -YP---NYNINTALK--LIDELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLA 655
+P + ++ A++ L+ E G KIV+GVPFYG+++ G+ G
Sbjct: 258 AFPSPFSLTVDAAVQQHLMME-GVPSAKIVMGVPFYGRAF-------KGVSG-----GNG 304
Query: 656 GEYTQQ--PGMLAYYEICYRIKTRKWTV--QRNTKSLEPRSMGTLKLDKEHGLGAETDGP 711
G+Y+ PG Y Y W V + + +PR +L++
Sbjct: 305 GQYSSHSTPGEDPYPSTDY------WLVGCEECVRDKDPRIASYRQLEQM---------- 348
Query: 712 GLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTF--QGDQWVSYEDPTSLTEK 769
L G Y Q R W N K+ P+ + Q +V+Y+D S K
Sbjct: 349 -LQGNYGYQ---------------RLW----NDKTKTPYLYHAQNGLFVTYDDAESFKYK 388
Query: 770 VKFIKSNGYAGIMAWTIDLDDFHNKCCMESFPLLRAVNRAF 810
K+IK G+M W + D+ + LL A++R F
Sbjct: 389 AKYIKQQQLGGVMFWHLGQDNRNGD-------LLAALDRYF 422
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 90/405 (22%), Positives = 161/405 (39%), Gaps = 99/405 (24%)
Query: 32 FNVKNVIP---QTCTHVIYAYAAI--------DPVSRALIPEDLEYDVIKGGYKSFLGLK 80
F V N+ P + TH+ +++ I DP + D+ LK
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDV--------VNRLTALK 82
Query: 81 EANPELKVYLAV------------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLN 128
NP L++ ++ +N+V+ SR F S + + Y FDG+D++
Sbjct: 83 AHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRTKFAQSCVRIMKDYGFDGVDID 142
Query: 129 VKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNN---------YQLTLTSPG--- 176
+ P A E F +QE+ + L + YQLT+ G
Sbjct: 143 WEYPQ------------AAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAF 190
Query: 177 VIDRKTSLVDISVVAPLVDLILLKSFN--------NDH----MDDEVVPVKPNT--KVNI 222
+ R S + +VAPL D I L +++ +H D P N + N+
Sbjct: 191 FLSRYYSKL-AQIVAPL-DYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANL 248
Query: 223 -----QVTSTIAN-FN-NIESAVY-NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGA 274
++T + F+ +++AV + + +G +I++G+PF+G++++ + G +
Sbjct: 249 GWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYS 308
Query: 275 TVKGPGTEGKYTQMPGYLAFFEVCNKFKDKT-----------------WRHFTDSNGEPF 317
+ PG E Y +L E C + KD R + D P+
Sbjct: 309 SHSTPG-EDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPY 367
Query: 318 M--VKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRG 360
+ + ++TY++ +S + K YIK + LGG M W L D+ G
Sbjct: 368 LYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNG 412
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 2255 KFNERGIQVILAIGGW--SDSRSDKYSRLVNDI--PARRN-FVRHVTEFLEFYGFNGLEF 2309
K + ++++ +IGGW S+ ++ VN + PA R F + ++ YGF+G++
Sbjct: 82 KAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRTKFAQSCVRIMKDYGFDGVDI 141
Query: 2310 AWEYPKC 2316
WEYP+
Sbjct: 142 DWEYPQA 148
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 2338 RGPYAYNGK--LWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDD 2381
+ PY Y+ + L+++YDD + K K IKQ LGG M W + D+
Sbjct: 364 KTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 94.0 bits (232), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 89/361 (24%), Positives = 144/361 (39%), Gaps = 104/361 (28%)
Query: 1773 KVTALKKK--GVKVTLAIGGW--NDSAGNKYSRLVNSQQ---ARSKFIAHVVNFILEHNF 1825
++TALK +++ +IGGW ++ G ++ VN+ + +R+KF V + ++ F
Sbjct: 76 RLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGF 135
Query: 1826 DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNA 1885
DG+D+DWEYP+ +VD GF ++E+R N + P + I A
Sbjct: 136 DGVDIDWEYPQAAEVD----------GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGA 185
Query: 1886 YDIPVMSE----------NLDWISVMTYDYHGQWDKKTGHVAPMY--------------- 1920
+S LD+I++MTYD G W+K T H A ++
Sbjct: 186 GGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREA 245
Query: 1921 -----------ALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNG 1969
A P+ + T +A H + G K++ G+P YG++F K +G
Sbjct: 246 NLGWSWEELTRAFPSPFSLTVDAAVQQHL-MMEGVPSAKIVMGVPFYGRAF----KGVSG 300
Query: 1970 LNSQTYGG-AEAGENTRARGFLAYYEICDKIQKDGWVV-----VRDRKRRIG-------- 2015
N Y + GE+ D W+V VRD+ RI
Sbjct: 301 GNGGQYSSHSTPGEDPYP-------------STDYWLVGCEECVRDKDPRIASYRQLEQM 347
Query: 2016 -----------------PYAFKGDQ--WVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 2056
PY + +V +DD +KA+++K LGG M W L D
Sbjct: 348 LQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQD 407
Query: 2057 D 2057
+
Sbjct: 408 N 408
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 102/244 (41%), Gaps = 53/244 (21%)
Query: 1406 RVVTLKKK--GVKVSLAIGGW--NDSLGGKYSRLVNSA---TARQRFIEHVVKFLLKYQF 1458
R+ LK +++ +IGGW ++ LG ++ VN+ +R +F + V+ + Y F
Sbjct: 76 RLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGF 135
Query: 1459 DGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAA 1518
DG+D+DWEYP +V + F ++E+ + P + I A
Sbjct: 136 DGVDIDWEYPQAAEV----------DGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGA 185
Query: 1519 YDVKALSE----------SLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFY------ 1562
LS LD+I++MTYD G W+K T H A L+ FY
Sbjct: 186 GGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREA 245
Query: 1563 ------------FNANFTM-------NYWMKKGAPSRKLVMGVHPLLSTITEVLGHGPGG 1603
F + F++ + M +G PS K+VMGV P + + G GG
Sbjct: 246 NLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGV-PFYGRAFKGVSGGNGG 304
Query: 1604 NYES 1607
Y S
Sbjct: 305 QYSS 308
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 90/401 (22%), Positives = 156/401 (38%), Gaps = 113/401 (28%)
Query: 457 VKILIAIGGWTDS-----SGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPV 511
++I+ +IGGW S S Y + + ++R KF +S + ++ + F G+ DW YP
Sbjct: 87 LRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQ 146
Query: 512 CWQADCSKQHKADKGNFVKLIQELKAEFDKHD---------YSIAVGISGYKEILEVAYD 562
+ D F+ +QE++ ++ Y + + +G L Y
Sbjct: 147 AAEVD----------GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYS 196
Query: 563 -FPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEP-------------------- 601
+ +++++LM+YD G WE +T + L P
Sbjct: 197 KLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTR 256
Query: 602 -YP---NYNINTALK--LIDELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLA 655
+P + ++ A++ L+ E G KIV+GVPFYG+++ G+ G
Sbjct: 257 AFPSPFSLTVDAAVQQHLMME-GVPSAKIVMGVPFYGRAF-------KGVSG-----GNG 303
Query: 656 GEYTQQ--PGMLAYYEICYRIKTRKWTV--QRNTKSLEPRSMGTLKLDKEHGLGAETDGP 711
G+Y+ PG Y Y W V + + +PR +L++
Sbjct: 304 GQYSSHSTPGEDPYPSTDY------WLVGCEECVRDKDPRIASYRQLEQM---------- 347
Query: 712 GLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTF--QGDQWVSYEDPTSLTEK 769
L G Y Q R W N K+ P+ + Q +V+Y+D S K
Sbjct: 348 -LQGNYGYQ---------------RLW----NDKTKTPYLYHAQNGLFVTYDDAESFKYK 387
Query: 770 VKFIKSNGYAGIMAWTIDLDDFHNKCCMESFPLLRAVNRAF 810
K+IK G+M W + D+ + LL A++R F
Sbjct: 388 AKYIKQQQLGGVMFWHLGQDNRNGD-------LLAALDRYF 421
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 90/405 (22%), Positives = 161/405 (39%), Gaps = 99/405 (24%)
Query: 32 FNVKNVIP---QTCTHVIYAYAAI--------DPVSRALIPEDLEYDVIKGGYKSFLGLK 80
F V N+ P + TH+ +++ I DP + D+ LK
Sbjct: 30 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDV--------VNRLTALK 81
Query: 81 EANPELKVYLAV------------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLN 128
NP L++ ++ +N+V+ SR F S + + Y FDG+D++
Sbjct: 82 AHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDID 141
Query: 129 VKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNN---------YQLTLTSPG--- 176
+ P A E F +QE+ + L + YQLT+ G
Sbjct: 142 WEYPQ------------AAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAF 189
Query: 177 VIDRKTSLVDISVVAPLVDLILLKSFN--------NDH----MDDEVVPVKPNT--KVNI 222
+ R S + +VAPL D I L +++ +H D P N + N+
Sbjct: 190 FLSRYYSKL-AQIVAPL-DYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANL 247
Query: 223 -----QVTSTIAN-FN-NIESAVY-NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGA 274
++T + F+ +++AV + + +G +I++G+PF+G++++ + G +
Sbjct: 248 GWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYS 307
Query: 275 TVKGPGTEGKYTQMPGYLAFFEVCNKFKDKT-----------------WRHFTDSNGEPF 317
+ PG E Y +L E C + KD R + D P+
Sbjct: 308 SHSTPG-EDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPY 366
Query: 318 M--VKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRG 360
+ + ++TY++ +S + K YIK + LGG M W L D+ G
Sbjct: 367 LYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNG 411
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 2338 RGPYAYNGK--LWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDD 2381
+ PY Y+ + L+++YDD + K K IKQ LGG M W + D+
Sbjct: 363 KTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 408
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 2255 KFNERGIQVILAIGGW--SDSRSDKYSRLVNDI--PARR-NFVRHVTEFLEFYGFNGLEF 2309
K + ++++ +IGGW S+ ++ VN + PA R F + ++ YGF+G++
Sbjct: 81 KAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDI 140
Query: 2310 AWEYPKC 2316
WEYP+
Sbjct: 141 DWEYPQA 147
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 144/361 (39%), Gaps = 104/361 (28%)
Query: 1773 KVTALKKK--GVKVTLAIGGW--NDSAGNKYSRLVNSQQ---ARSKFIAHVVNFILEHNF 1825
++TALK +++ +IGGW ++ G ++ VN+ + +R+KF V + ++ F
Sbjct: 77 RLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGF 136
Query: 1826 DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNA 1885
DG+D+DW+YP+ +VD GF ++E+R N + P + I A
Sbjct: 137 DGVDIDWQYPQAAEVD----------GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGA 186
Query: 1886 YDIPVMSE----------NLDWISVMTYDYHGQWDKKTGHVAPMY--------------- 1920
+S LD+I++MTYD G W+K T H A ++
Sbjct: 187 GGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREA 246
Query: 1921 -----------ALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNG 1969
A P+ + T +A H + G K++ G+P YG++F K +G
Sbjct: 247 NLGWSWEELTRAFPSPFSLTVDAAVQQHL-MMEGVPSAKIVMGVPFYGRAF----KGVSG 301
Query: 1970 LNSQTYGG-AEAGENTRARGFLAYYEICDKIQKDGWVV-----VRDRKRRIG-------- 2015
N Y + GE+ D W+V VRD+ RI
Sbjct: 302 GNGGQYSSHSTPGEDPYP-------------STDYWLVGCEECVRDKDPRIASYRQLEQM 348
Query: 2016 -----------------PYAFKGDQ--WVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 2056
PY + +V +DD +KA+++K LGG M W L D
Sbjct: 349 LQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQD 408
Query: 2057 D 2057
+
Sbjct: 409 N 409
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 102/244 (41%), Gaps = 53/244 (21%)
Query: 1406 RVVTLKKK--GVKVSLAIGGW--NDSLGGKYSRLVNSA---TARQRFIEHVVKFLLKYQF 1458
R+ LK +++ +IGGW ++ LG ++ VN+ +R +F + V+ + Y F
Sbjct: 77 RLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGF 136
Query: 1459 DGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAA 1518
DG+D+DW+YP +V + F ++E+ + P + I A
Sbjct: 137 DGVDIDWQYPQAAEV----------DGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGA 186
Query: 1519 YDVKALSE----------SLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFY------ 1562
LS LD+I++MTYD G W+K T H A L+ FY
Sbjct: 187 GGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREA 246
Query: 1563 ------------FNANFTM-------NYWMKKGAPSRKLVMGVHPLLSTITEVLGHGPGG 1603
F + F++ + M +G PS K+VMGV P + + G GG
Sbjct: 247 NLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGV-PFYGRAFKGVSGGNGG 305
Query: 1604 NYES 1607
Y S
Sbjct: 306 QYSS 309
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 90/401 (22%), Positives = 156/401 (38%), Gaps = 113/401 (28%)
Query: 457 VKILIAIGGWTDS-----SGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPV 511
++I+ +IGGW S S Y + + ++R KF +S + ++ + F G+ DW YP
Sbjct: 88 LRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWQYPQ 147
Query: 512 CWQADCSKQHKADKGNFVKLIQELKAEFDKHD---------YSIAVGISGYKEILEVAYD 562
+ D F+ +QE++ ++ Y + + +G L Y
Sbjct: 148 AAEVD----------GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYS 197
Query: 563 -FPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEP-------------------- 601
+ +++++LM+YD G WE +T + L P
Sbjct: 198 KLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTR 257
Query: 602 -YP---NYNINTALK--LIDELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLA 655
+P + ++ A++ L+ E G KIV+GVPFYG+++ G+ G
Sbjct: 258 AFPSPFSLTVDAAVQQHLMME-GVPSAKIVMGVPFYGRAF-------KGVSG-----GNG 304
Query: 656 GEYTQQ--PGMLAYYEICYRIKTRKWTV--QRNTKSLEPRSMGTLKLDKEHGLGAETDGP 711
G+Y+ PG Y Y W V + + +PR +L++
Sbjct: 305 GQYSSHSTPGEDPYPSTDY------WLVGCEECVRDKDPRIASYRQLEQM---------- 348
Query: 712 GLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTF--QGDQWVSYEDPTSLTEK 769
L G Y Q R W N K+ P+ + Q +V+Y+D S K
Sbjct: 349 -LQGNYGYQ---------------RLW----NDKTKTPYLYHAQNGLFVTYDDAESFKYK 388
Query: 770 VKFIKSNGYAGIMAWTIDLDDFHNKCCMESFPLLRAVNRAF 810
K+IK G+M W + D+ + LL A++R F
Sbjct: 389 AKYIKQQQLGGVMFWHLGQDNRNGD-------LLAALDRYF 422
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 90/405 (22%), Positives = 161/405 (39%), Gaps = 99/405 (24%)
Query: 32 FNVKNVIP---QTCTHVIYAYAAI--------DPVSRALIPEDLEYDVIKGGYKSFLGLK 80
F V N+ P + TH+ +++ I DP + D+ LK
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDV--------VNRLTALK 82
Query: 81 EANPELKVYLAV------------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLN 128
NP L++ ++ +N+V+ SR F S + + Y FDG+D++
Sbjct: 83 AHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDID 142
Query: 129 VKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNN---------YQLTLTSPG--- 176
+ P A E F +QE+ + L + YQLT+ G
Sbjct: 143 WQYPQ------------AAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAF 190
Query: 177 VIDRKTSLVDISVVAPLVDLILLKSFN--------NDH----MDDEVVPVKPNT--KVNI 222
+ R S + +VAPL D I L +++ +H D P N + N+
Sbjct: 191 FLSRYYSKL-AQIVAPL-DYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANL 248
Query: 223 -----QVTSTIAN-FN-NIESAVY-NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGA 274
++T + F+ +++AV + + +G +I++G+PF+G++++ + G +
Sbjct: 249 GWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYS 308
Query: 275 TVKGPGTEGKYTQMPGYLAFFEVCNKFKDKT-----------------WRHFTDSNGEPF 317
+ PG E Y +L E C + KD R + D P+
Sbjct: 309 SHSTPG-EDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPY 367
Query: 318 M--VKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRG 360
+ + ++TY++ +S + K YIK + LGG M W L D+ G
Sbjct: 368 LYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNG 412
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 2338 RGPYAYNGK--LWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDD 2381
+ PY Y+ + L+++YDD + K K IKQ LGG M W + D+
Sbjct: 364 KTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
Score = 38.1 bits (87), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 2255 KFNERGIQVILAIGGW--SDSRSDKYSRLVNDI--PARR-NFVRHVTEFLEFYGFNGLEF 2309
K + ++++ +IGGW S+ ++ VN + PA R F + ++ YGF+G++
Sbjct: 82 KAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDI 141
Query: 2310 AWEYPKC 2316
W+YP+
Sbjct: 142 DWQYPQA 148
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 144/361 (39%), Gaps = 104/361 (28%)
Query: 1773 KVTALKKK--GVKVTLAIGGW--NDSAGNKYSRLVNSQQ---ARSKFIAHVVNFILEHNF 1825
++TALK +++ +IGGW ++ G ++ VN+ + +R+KF V + ++ F
Sbjct: 77 RLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGF 136
Query: 1826 DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNA 1885
DG+D++WEYP+ +VD GF ++E+R N + P + I A
Sbjct: 137 DGVDINWEYPQAAEVD----------GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGA 186
Query: 1886 YDIPVMSE----------NLDWISVMTYDYHGQWDKKTGHVAPMY--------------- 1920
+S LD+I++MTYD G W+K T H A ++
Sbjct: 187 GGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREA 246
Query: 1921 -----------ALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNG 1969
A P+ + T +A H + G K++ G+P YG++F K +G
Sbjct: 247 NLGWSWEELTRAFPSPFSLTVDAAVQQHL-MMEGVPSAKIVMGVPFYGRAF----KGVSG 301
Query: 1970 LNSQTYGG-AEAGENTRARGFLAYYEICDKIQKDGWVV-----VRDRKRRIG-------- 2015
N Y + GE+ D W+V VRD+ RI
Sbjct: 302 GNGGQYSSHSTPGEDPYP-------------STDYWLVGCEECVRDKDPRIASYRQLEQM 348
Query: 2016 -----------------PYAFKGDQ--WVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 2056
PY + +V +DD +KA+++K LGG M W L D
Sbjct: 349 LQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQD 408
Query: 2057 D 2057
+
Sbjct: 409 N 409
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 102/244 (41%), Gaps = 53/244 (21%)
Query: 1406 RVVTLKKK--GVKVSLAIGGW--NDSLGGKYSRLVNSA---TARQRFIEHVVKFLLKYQF 1458
R+ LK +++ +IGGW ++ LG ++ VN+ +R +F + V+ + Y F
Sbjct: 77 RLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGF 136
Query: 1459 DGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAA 1518
DG+D++WEYP +V + F ++E+ + P + I A
Sbjct: 137 DGVDINWEYPQAAEV----------DGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGA 186
Query: 1519 YDVKALSE----------SLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFY------ 1562
LS LD+I++MTYD G W+K T H A L+ FY
Sbjct: 187 GGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREA 246
Query: 1563 ------------FNANFTM-------NYWMKKGAPSRKLVMGVHPLLSTITEVLGHGPGG 1603
F + F++ + M +G PS K+VMGV P + + G GG
Sbjct: 247 NLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGV-PFYGRAFKGVSGGNGG 305
Query: 1604 NYES 1607
Y S
Sbjct: 306 QYSS 309
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 100/450 (22%), Positives = 176/450 (39%), Gaps = 118/450 (26%)
Query: 410 KLCTHIVYAFASLDPNT-LSIQAGNPEADIDDNFYQRISSSPLVTHG-KVKILIAIGGWT 467
K THI ++F ++ N + +A D R+++ L H ++I+ +IGGW
Sbjct: 42 KQLTHINFSFLDINSNLECAWDPATNDAKARD-VVNRLTA--LKAHNPSLRIMFSIGGWY 98
Query: 468 DS-----SGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHK 522
S S Y + + ++R KF +S + ++ + F G+ +W YP + D
Sbjct: 99 YSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYPQAAEVD------ 152
Query: 523 ADKGNFVKLIQELKAEFDKHD---------YSIAVGISGYKEILEVAYD-FPALNDHVEF 572
F+ +QE++ ++ Y + + +G L Y + +++
Sbjct: 153 ----GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDY 208
Query: 573 MSLMSYDYHGAWEGITGLVSPLNSRPGEP---------------------YP---NYNIN 608
++LM+YD G WE +T + L P +P + ++
Sbjct: 209 INLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVD 268
Query: 609 TALK--LIDELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQ--PGM 664
A++ L+ E G KIV+GVPFYG+++ G+ G G+Y+ PG
Sbjct: 269 AAVQQHLMME-GVPSAKIVMGVPFYGRAF-------KGVSG-----GNGGQYSSHSTPGE 315
Query: 665 LAYYEICYRIKTRKWTV--QRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPG 722
Y Y W V + + +PR +L++ L G Y Q
Sbjct: 316 DPYPSTDY------WLVGCEECVRDKDPRIASYRQLEQM-----------LQGNYGYQ-- 356
Query: 723 MLAYYEICYRIKTRKWTVQRNTKSLEPFTF--QGDQWVSYEDPTSLTEKVKFIKSNGYAG 780
R W N K+ P+ + Q +V+Y+D S K K+IK G
Sbjct: 357 -------------RLW----NDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGG 399
Query: 781 IMAWTIDLDDFHNKCCMESFPLLRAVNRAF 810
+M W + D+ + LL A++R F
Sbjct: 400 VMFWHLGQDNRNGD-------LLAALDRYF 422
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 91/405 (22%), Positives = 161/405 (39%), Gaps = 99/405 (24%)
Query: 32 FNVKNVIP---QTCTHVIYAYAAI--------DPVSRALIPEDLEYDVIKGGYKSFLGLK 80
F V N+ P + TH+ +++ I DP + D+ LK
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDV--------VNRLTALK 82
Query: 81 EANPELKVYLAV------------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLN 128
NP L++ ++ +N+V+ SR F S + + Y FDG+D+N
Sbjct: 83 AHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIN 142
Query: 129 VKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNN---------YQLTLTSPG--- 176
+ P A E F +QE+ + L + YQLT+ G
Sbjct: 143 WEYPQ------------AAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAF 190
Query: 177 VIDRKTSLVDISVVAPLVDLILLKSFN--------NDH----MDDEVVPVKPNT--KVNI 222
+ R S + +VAPL D I L +++ +H D P N + N+
Sbjct: 191 FLSRYYSKL-AQIVAPL-DYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANL 248
Query: 223 -----QVTSTIAN-FN-NIESAVY-NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGA 274
++T + F+ +++AV + + +G +I++G+PF+G++++ + G +
Sbjct: 249 GWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYS 308
Query: 275 TVKGPGTEGKYTQMPGYLAFFEVCNKFKDKT-----------------WRHFTDSNGEPF 317
+ PG E Y +L E C + KD R + D P+
Sbjct: 309 SHSTPG-EDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPY 367
Query: 318 M--VKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRG 360
+ + ++TY++ +S + K YIK + LGG M W L D+ G
Sbjct: 368 LYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNG 412
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 2338 RGPYAYNGK--LWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDD 2381
+ PY Y+ + L+++YDD + K K IKQ LGG M W + D+
Sbjct: 364 KTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 2255 KFNERGIQVILAIGGW--SDSRSDKYSRLVNDI--PARR-NFVRHVTEFLEFYGFNGLEF 2309
K + ++++ +IGGW S+ ++ VN + PA R F + ++ YGF+G++
Sbjct: 82 KAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDI 141
Query: 2310 AWEYPKC 2316
WEYP+
Sbjct: 142 NWEYPQA 148
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In Complex
With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In Complex
With Inhibitor Allosamidin
Length = 499
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 144/361 (39%), Gaps = 104/361 (28%)
Query: 1773 KVTALKKK--GVKVTLAIGGW--NDSAGNKYSRLVNSQQ---ARSKFIAHVVNFILEHNF 1825
++TALK +++ +IGGW ++ G ++ VN+ + +R+KF V + ++ F
Sbjct: 77 RLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGF 136
Query: 1826 DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNA 1885
DG+D++WEYP+ +VD GF ++E+R N + P + I A
Sbjct: 137 DGVDINWEYPQAAEVD----------GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGA 186
Query: 1886 YDIPVMSE----------NLDWISVMTYDYHGQWDKKTGHVAPMY--------------- 1920
+S LD+I++MTYD G W+K T H A ++
Sbjct: 187 GGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREA 246
Query: 1921 -----------ALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNG 1969
A P+ + T +A H + G K++ G+P YG++F K +G
Sbjct: 247 NLGWSWEELTRAFPSPFSLTVDAAVQQHL-MMEGVPSAKIVMGVPFYGRAF----KGVSG 301
Query: 1970 LNSQTYGG-AEAGENTRARGFLAYYEICDKIQKDGWVV-----VRDRKRRIG-------- 2015
N Y + GE+ D W+V VRD+ RI
Sbjct: 302 GNGGQYSSHSTPGEDPYP-------------STDYWLVGCEECVRDKDPRIASYRQLEQM 348
Query: 2016 -----------------PYAFKGDQ--WVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 2056
PY + +V +DD +KA+++K LGG M W L D
Sbjct: 349 LQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQD 408
Query: 2057 D 2057
+
Sbjct: 409 N 409
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 102/244 (41%), Gaps = 53/244 (21%)
Query: 1406 RVVTLKKK--GVKVSLAIGGW--NDSLGGKYSRLVNSA---TARQRFIEHVVKFLLKYQF 1458
R+ LK +++ +IGGW ++ LG ++ VN+ +R +F + V+ + Y F
Sbjct: 77 RLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGF 136
Query: 1459 DGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAA 1518
DG+D++WEYP +V + F ++E+ + P + I A
Sbjct: 137 DGVDINWEYPQAAEV----------DGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGA 186
Query: 1519 YDVKALSE----------SLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFY------ 1562
LS LD+I++MTYD G W+K T H A L+ FY
Sbjct: 187 GGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREA 246
Query: 1563 ------------FNANFTM-------NYWMKKGAPSRKLVMGVHPLLSTITEVLGHGPGG 1603
F + F++ + M +G PS K+VMGV P + + G GG
Sbjct: 247 NLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGV-PFYGRAFKGVSGGNGG 305
Query: 1604 NYES 1607
Y S
Sbjct: 306 QYSS 309
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 100/450 (22%), Positives = 176/450 (39%), Gaps = 118/450 (26%)
Query: 410 KLCTHIVYAFASLDPNT-LSIQAGNPEADIDDNFYQRISSSPLVTHG-KVKILIAIGGWT 467
K THI ++F ++ N + +A D R+++ L H ++I+ +IGGW
Sbjct: 42 KQLTHINFSFLDINSNLECAWDPATNDAKARD-VVNRLTA--LKAHNPSLRIMFSIGGWY 98
Query: 468 DS-----SGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHK 522
S S Y + + ++R KF +S + ++ + F G+ +W YP + D
Sbjct: 99 YSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYPQAAEVD------ 152
Query: 523 ADKGNFVKLIQELKAEFDKHD---------YSIAVGISGYKEILEVAYD-FPALNDHVEF 572
F+ +QE++ ++ Y + + +G L Y + +++
Sbjct: 153 ----GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDY 208
Query: 573 MSLMSYDYHGAWEGITGLVSPLNSRPGEP---------------------YP---NYNIN 608
++LM+YD G WE +T + L P +P + ++
Sbjct: 209 INLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVD 268
Query: 609 TALK--LIDELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQ--PGM 664
A++ L+ E G KIV+GVPFYG+++ G+ G G+Y+ PG
Sbjct: 269 AAVQQHLMME-GVPSAKIVMGVPFYGRAF-------KGVSG-----GNGGQYSSHSTPGE 315
Query: 665 LAYYEICYRIKTRKWTV--QRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPG 722
Y Y W V + + +PR +L++ L G Y Q
Sbjct: 316 DPYPSTDY------WLVGCEECVRDKDPRIASYRQLEQM-----------LQGNYGYQ-- 356
Query: 723 MLAYYEICYRIKTRKWTVQRNTKSLEPFTF--QGDQWVSYEDPTSLTEKVKFIKSNGYAG 780
R W N K+ P+ + Q +V+Y+D S K K+IK G
Sbjct: 357 -------------RLW----NDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGG 399
Query: 781 IMAWTIDLDDFHNKCCMESFPLLRAVNRAF 810
+M W + D+ + LL A++R F
Sbjct: 400 VMFWHLGQDNRNGD-------LLAALDRYF 422
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 91/405 (22%), Positives = 161/405 (39%), Gaps = 99/405 (24%)
Query: 32 FNVKNVIP---QTCTHVIYAYAAI--------DPVSRALIPEDLEYDVIKGGYKSFLGLK 80
F V N+ P + TH+ +++ I DP + D+ LK
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDV--------VNRLTALK 82
Query: 81 EANPELKVYLAV------------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLN 128
NP L++ ++ +N+V+ SR F S + + Y FDG+D+N
Sbjct: 83 AHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIN 142
Query: 129 VKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNN---------YQLTLTSPG--- 176
+ P A E F +QE+ + L + YQLT+ G
Sbjct: 143 WEYPQ------------AAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAF 190
Query: 177 VIDRKTSLVDISVVAPLVDLILLKSFN--------NDH----MDDEVVPVKPNT--KVNI 222
+ R S + +VAPL D I L +++ +H D P N + N+
Sbjct: 191 FLSRYYSKL-AQIVAPL-DYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANL 248
Query: 223 -----QVTSTIAN-FN-NIESAVY-NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGA 274
++T + F+ +++AV + + +G +I++G+PF+G++++ + G +
Sbjct: 249 GWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYS 308
Query: 275 TVKGPGTEGKYTQMPGYLAFFEVCNKFKDKT-----------------WRHFTDSNGEPF 317
+ PG E Y +L E C + KD R + D P+
Sbjct: 309 SHSTPG-EDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPY 367
Query: 318 M--VKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRG 360
+ + ++TY++ +S + K YIK + LGG M W L D+ G
Sbjct: 368 LYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNG 412
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 2255 KFNERGIQVILAIGGW--SDSRSDKYSRLVNDI--PARR-NFVRHVTEFLEFYGFNGLEF 2309
K + ++++ +IGGW S+ ++ VN + PA R F + ++ YGF+G++
Sbjct: 82 KAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDI 141
Query: 2310 AWEYPKC 2316
WEYP+
Sbjct: 142 NWEYPQA 148
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 2338 RGPYAYNGK--LWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDD 2381
+ PY Y+ + L+++YDD + K K IKQ LGG M W + D+
Sbjct: 364 KTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 144/361 (39%), Gaps = 104/361 (28%)
Query: 1773 KVTALKKK--GVKVTLAIGGW--NDSAGNKYSRLVNSQQ---ARSKFIAHVVNFILEHNF 1825
++TALK +++ +IGGW ++ G ++ VN+ + +R+KF V + ++ F
Sbjct: 77 RLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGF 136
Query: 1826 DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNA 1885
DG+++DWEYP+ +VD GF ++E+R N + P + I A
Sbjct: 137 DGVNIDWEYPQAAEVD----------GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGA 186
Query: 1886 YDIPVMSE----------NLDWISVMTYDYHGQWDKKTGHVAPMY--------------- 1920
+S LD+I++MTYD G W+K T H A ++
Sbjct: 187 GGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREA 246
Query: 1921 -----------ALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNG 1969
A P+ + T +A H + G K++ G+P YG++F K +G
Sbjct: 247 NLGWSWEELTRAFPSPFSLTVDAAVQQHL-MMEGVPSAKIVMGVPFYGRAF----KGVSG 301
Query: 1970 LNSQTYGG-AEAGENTRARGFLAYYEICDKIQKDGWVV-----VRDRKRRIG-------- 2015
N Y + GE+ D W+V VRD+ RI
Sbjct: 302 GNGGQYSSHSTPGEDPYP-------------STDYWLVGCEECVRDKDPRIASYRQLEQM 348
Query: 2016 -----------------PYAFKGDQ--WVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 2056
PY + +V +DD +KA+++K LGG M W L D
Sbjct: 349 LQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQD 408
Query: 2057 D 2057
+
Sbjct: 409 N 409
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 102/244 (41%), Gaps = 53/244 (21%)
Query: 1406 RVVTLKKK--GVKVSLAIGGW--NDSLGGKYSRLVNSA---TARQRFIEHVVKFLLKYQF 1458
R+ LK +++ +IGGW ++ LG ++ VN+ +R +F + V+ + Y F
Sbjct: 77 RLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGF 136
Query: 1459 DGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAA 1518
DG+++DWEYP +V + F ++E+ + P + I A
Sbjct: 137 DGVNIDWEYPQAAEV----------DGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGA 186
Query: 1519 YDVKALSE----------SLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFY------ 1562
LS LD+I++MTYD G W+K T H A L+ FY
Sbjct: 187 GGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREA 246
Query: 1563 ------------FNANFTM-------NYWMKKGAPSRKLVMGVHPLLSTITEVLGHGPGG 1603
F + F++ + M +G PS K+VMGV P + + G GG
Sbjct: 247 NLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGV-PFYGRAFKGVSGGNGG 305
Query: 1604 NYES 1607
Y S
Sbjct: 306 QYSS 309
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 101/450 (22%), Positives = 177/450 (39%), Gaps = 118/450 (26%)
Query: 410 KLCTHIVYAFASLDPNT-LSIQAGNPEADIDDNFYQRISSSPLVTHG-KVKILIAIGGWT 467
K THI ++F ++ N + +A D R+++ L H ++I+ +IGGW
Sbjct: 42 KQLTHINFSFLDINSNLECAWDPATNDAKARD-VVNRLTA--LKAHNPSLRIMFSIGGWY 98
Query: 468 DS-----SGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHK 522
S S Y + + ++R KF +S + ++ + F G++ DW YP + D
Sbjct: 99 YSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNIDWEYPQAAEVD------ 152
Query: 523 ADKGNFVKLIQELKAEFDKHD---------YSIAVGISGYKEILEVAYD-FPALNDHVEF 572
F+ +QE++ ++ Y + + +G L Y + +++
Sbjct: 153 ----GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDY 208
Query: 573 MSLMSYDYHGAWEGITGLVSPLNSRPGEP---------------------YP---NYNIN 608
++LM+YD G WE +T + L P +P + ++
Sbjct: 209 INLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVD 268
Query: 609 TALK--LIDELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQ--PGM 664
A++ L+ E G KIV+GVPFYG+++ G+ G G+Y+ PG
Sbjct: 269 AAVQQHLMME-GVPSAKIVMGVPFYGRAF-------KGVSG-----GNGGQYSSHSTPGE 315
Query: 665 LAYYEICYRIKTRKWTV--QRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPG 722
Y Y W V + + +PR +L++ L G Y Q
Sbjct: 316 DPYPSTDY------WLVGCEECVRDKDPRIASYRQLEQM-----------LQGNYGYQ-- 356
Query: 723 MLAYYEICYRIKTRKWTVQRNTKSLEPFTF--QGDQWVSYEDPTSLTEKVKFIKSNGYAG 780
R W N K+ P+ + Q +V+Y+D S K K+IK G
Sbjct: 357 -------------RLW----NDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGG 399
Query: 781 IMAWTIDLDDFHNKCCMESFPLLRAVNRAF 810
+M W + D+ + LL A++R F
Sbjct: 400 VMFWHLGQDNRNGD-------LLAALDRYF 422
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 89/405 (21%), Positives = 161/405 (39%), Gaps = 99/405 (24%)
Query: 32 FNVKNVIP---QTCTHVIYAYAAI--------DPVSRALIPEDLEYDVIKGGYKSFLGLK 80
F V N+ P + TH+ +++ I DP + D+ LK
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDV--------VNRLTALK 82
Query: 81 EANPELKVYLAV------------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLN 128
NP L++ ++ +N+V+ SR F S + + Y FDG++++
Sbjct: 83 AHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNID 142
Query: 129 VKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNN---------YQLTLTSPG--- 176
+ P A E F +QE+ + L + YQLT+ G
Sbjct: 143 WEYPQ------------AAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAF 190
Query: 177 VIDRKTSLVDISVVAPLVDLILLKSFN--------NDH----MDDEVVPVKPNT--KVNI 222
+ R S + +VAPL D I L +++ +H D P N + N+
Sbjct: 191 FLSRYYSKL-AQIVAPL-DYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANL 248
Query: 223 -----QVTSTIAN-FN-NIESAVY-NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGA 274
++T + F+ +++AV + + +G +I++G+PF+G++++ + G +
Sbjct: 249 GWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYS 308
Query: 275 TVKGPGTEGKYTQMPGYLAFFEVCNKFKDKT-----------------WRHFTDSNGEPF 317
+ PG E Y +L E C + KD R + D P+
Sbjct: 309 SHSTPG-EDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPY 367
Query: 318 M--VKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRG 360
+ + ++TY++ +S + K YIK + LGG M W L D+ G
Sbjct: 368 LYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNG 412
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 2338 RGPYAYNGK--LWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDD 2381
+ PY Y+ + L+++YDD + K K IKQ LGG M W + D+
Sbjct: 364 KTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
Score = 38.5 bits (88), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 2255 KFNERGIQVILAIGGW--SDSRSDKYSRLVNDI--PARR-NFVRHVTEFLEFYGFNGLEF 2309
K + ++++ +IGGW S+ ++ VN + PA R F + ++ YGF+G+
Sbjct: 82 KAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNI 141
Query: 2310 AWEYPKC 2316
WEYP+
Sbjct: 142 DWEYPQA 148
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 94/424 (22%), Positives = 160/424 (37%), Gaps = 91/424 (21%)
Query: 1715 CYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGF-----------------------AVLD 1751
YF W Y G Y ++ D TH++YGF A
Sbjct: 142 TYFVEWGIY---GRDYTVDNMPVDNLTHILYGFIPICGPNESVKSVGGNSFNALQTACRG 198
Query: 1752 TDQLVIKPHDTWADLDNKF--------------YEKVTALKKKG--VKVTLAIGGWNDSA 1795
+ + HD WA F Y + ALK++ +K+ +IGGW S
Sbjct: 199 VNDYEVVIHDPWAAYQKSFPQAGHEYSTPIKGNYAMLMALKQRNPDLKIIPSIGGWTLS- 257
Query: 1796 GNKYSRLVNSQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQG-PASDKQGF 1853
+ + V+ + R F+A V F+ F DG+D+DWE+P +G P +D +
Sbjct: 258 -DPFYDFVDKKN-RDTFVASVKKFLKTWKFYDGVDIDWEFPGGGGAAADKGDPVNDGPAY 315
Query: 1854 ADLIKELRAAFNPHDLL------LSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHG 1907
L++ELR + + L++A+ I++ D + +D+I MTYD++G
Sbjct: 316 IALMRELRVMLDELEAETGRTYELTSAIGVGYDKIEDV-DYADAVQYMDYIFAMTYDFYG 374
Query: 1908 QWDKKTGHVAPMY----ALPND-------------TTPTFNANYSLHYWVSHGADRKKVI 1950
W+ GH +Y P P + A+ + ++ G K++
Sbjct: 375 GWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTADNGIQLLLAQGVPANKLV 434
Query: 1951 FGMPMYGQSF------TLADKNKNGLNSQTYGGAEAGENTRA---------RGFLAYYEI 1995
G MYG+ + TL D N + T G G + +G ++
Sbjct: 435 LGTAMYGRGWEGVTPDTLTDPNDPMTGTAT--GKLKGSTAQGVWEDGVIDYKGIKSFMLG 492
Query: 1996 CDKIQKDGWVVVRDRKRRIGPYAFK--GDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWAL 2053
+ +G+ D + P+ + + + FDD + K + K L G W +
Sbjct: 493 ANNTGINGFEYGYDAQAE-APWVWNRSTGELITFDDHRSVLAKGNYAKSLGLAGLFSWEI 551
Query: 2054 DLDD 2057
D D+
Sbjct: 552 DADN 555
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/370 (23%), Positives = 151/370 (40%), Gaps = 95/370 (25%)
Query: 457 VKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDF-AGLHFDWNYPVCWQA 515
+KI+ +IGGWT S + + + NR F+ SV FL+ + F G+ DW +P A
Sbjct: 245 LKIIPSIGGWTLS--DPFYDFVDK-KNRDTFVASVKKFLKTWKFYDGVDIDWEFPGGGGA 301
Query: 516 DCSKQHKADKG-NFVKLIQELKAEFDK--------HDYSIAVGISGYKEILEVAYDFPAL 566
K + G ++ L++EL+ D+ ++ + A+G+ GY +I +V D+
Sbjct: 302 AADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGV-GYDKIEDV--DYADA 358
Query: 567 NDHVEFMSLMSYDYHGAWEGITGLVSPLN----SRP-----------GEPY--PNYNINT 609
+++++ M+YD++G W + G + L RP GEPY P Y +
Sbjct: 359 VQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTADN 418
Query: 610 ALKLIDELGGDKRKIVIGVPFYGQSY------TLKLDKEHGLGAETDGPGLAGEYTQ--- 660
++L+ G K+V+G YG+ + TL + G T L G Q
Sbjct: 419 GIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATG--KLKGSTAQGVW 476
Query: 661 QPGMLAYYEICYRIKTRKWTVQRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQ 720
+ G++ Y + KS + T E+G A+ + P
Sbjct: 477 EDGVIDY---------------KGIKSFMLGANNTGINGFEYGYDAQAEAP--------- 512
Query: 721 PGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQGDQWVSYEDPTSLTEKVKFIKSNGYAG 780
W R+T L ++++D S+ K + KS G AG
Sbjct: 513 -----------------WVWNRSTGEL----------ITFDDHRSVLAKGNYAKSLGLAG 545
Query: 781 IMAWTIDLDD 790
+ +W ID D+
Sbjct: 546 LFSWEIDADN 555
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 14/160 (8%)
Query: 1404 YERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DG 1460
Y ++ LK++ +K+ +IGGW +L + V+ R F+ V KFL ++F DG
Sbjct: 232 YAMLMALKQRNPDLKIIPSIGGW--TLSDPFYDFVDKKN-RDTFVASVKKFLKTWKFYDG 288
Query: 1461 LDLDWEYPTCWQVNCDAG-PDSDKESFGLFVRELH------QAFKPHGLLLSAAVSPSKQ 1513
+D+DWE+P D G P +D ++ +REL +A L++A+
Sbjct: 289 VDIDWEFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGVGYD 348
Query: 1514 VINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLY 1553
I D + +D+I MTYD++G W+ GH LY
Sbjct: 349 KIEDV-DYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALY 387
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 69/334 (20%), Positives = 132/334 (39%), Gaps = 51/334 (15%)
Query: 69 IKGGYKSFLGLKEANPELKVYLAVKS--------NFVSITSDRESRLNFISSVLEMFDMY 120
IKG Y + LK+ NP+LK+ ++ +FV D+++R F++SV + +
Sbjct: 228 IKGNYAMLMALKQRNPDLKIIPSIGGWTLSDPFYDFV----DKKNRDTFVASVKKFLKTW 283
Query: 121 KF-DGLDLNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRR------NNYQLTLT 173
KF DG+D++ + P + + N+ + ++EL L Y+LT +
Sbjct: 284 KFYDGVDIDWEFPGGGGAAADKGDPV-NDGPAYIALMRELRVMLDELEAETGRTYELT-S 341
Query: 174 SPGVIDRKTSLVDISVVAPLVDLILLKSFN-----NDHMDDEVVP-----VKPNTKVNIQ 223
+ GV K VD + +D I +++ N+ + ++P
Sbjct: 342 AIGVGYDKIEDVDYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGG 401
Query: 224 VTSTIANFNNIESAVYNWIK----KGARPEQIIIGIPFFGKSYR------LFNRSEYGLG 273
V + N I+ +G ++++G +G+ + L + ++ G
Sbjct: 402 VDENGEPYKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTG 461
Query: 274 AT---VKGPGTEGKY----TQMPGYLAFFEVCNKFKDKTWRHFTDSNGEPFMV---KKDE 323
+KG +G + G +F N + + D+ E V E
Sbjct: 462 TATGKLKGSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGE 521
Query: 324 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 357
IT++++ S+ K NY K L G W +D D+
Sbjct: 522 LITFDDHRSVLAKGNYAKSLGLAGLFSWEIDADN 555
>pdb|3OA5|A Chain A, The Structure Of Chi1, A Chitinase From Yersinia Entomophaga
pdb|3OA5|B Chain B, The Structure Of Chi1, A Chitinase From Yersinia Entomophaga
Length = 574
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 107/436 (24%), Positives = 163/436 (37%), Gaps = 96/436 (22%)
Query: 1709 DEFKIVCYFTNWAWY---------RQSGGKYLPSDI------DSDLCTHVIYGFAVLDTD 1753
D+F ++CYFT+W+ Y R +GG+ +DI D +IY F L D
Sbjct: 98 DDFNVLCYFTDWSQYDPRIINKEIRDTGGR--SADILRLNTPDGRPFKRLIYSFGGLIGD 155
Query: 1754 Q---------------LVIKPHDTWADLDNKFY-------------------------EK 1773
+ + P D A+ K E+
Sbjct: 156 KKYSADGNASIAVRLGVATDPDDAIANHKGKTIPVDPDGAVLASINCGFTKWEAGDANER 215
Query: 1774 VTALKKKGV--------------KVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNF 1819
K KG+ + +L+IGGW S +S + + R+ F+ + +F
Sbjct: 216 YNQEKAKGLLGGFRLLHEADKELEFSLSIGGW--SMSGLFSEIAKDEILRTNFVEGIKDF 273
Query: 1820 ILEH-NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPS 1878
F LD+DWEYP P D FA LI+++ A + +S A S
Sbjct: 274 FQRFPMFSHLDIDWEYPGSIGAGNPNSP-DDGANFAILIQQITDAKISNLKGISIASSAD 332
Query: 1879 KAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHY 1938
A ID A +M + I++MTYD+ D K H +Y P+D + YS+
Sbjct: 333 PAKIDAANIPALMDAGVTGINLMTYDFFTLGDGKLSHHTNIYRDPSDVY----SKYSIDD 388
Query: 1939 WVSHGADRKKVIFGMPMYG-QSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYE--- 1994
V+H D KKV G +T KN S A G T A L +E
Sbjct: 389 AVTHLIDEKKVDPKAIFIGYAGYTRNAKNATITTSIPSEEALKGTYTDANQTLGSFEYSV 448
Query: 1995 ------ICDKIQ------KDGWVVVRDRKRRIG-PYAFKGDQWVGFDDQAMIHHKAEFVK 2041
IC + ++G+ +V D+ + Y+ ++ D + K +VK
Sbjct: 449 LEWTDIICHYMDFEKGEGRNGYKLVHDKVAKADYLYSEATKVFISLDTPRSVRDKGRYVK 508
Query: 2042 YNDLGGAMIWALDLDD 2057
LGG IW+ D D+
Sbjct: 509 DKGLGGLFIWSGDQDN 524
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 1406 RVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY-QFDGLDLD 1464
R++ K ++ SL+IGGW S+ G +S + R F+E + F ++ F LD+D
Sbjct: 229 RLLHEADKELEFSLSIGGW--SMSGLFSEIAKDEILRTNFVEGIKDFFQRFPMFSHLDID 286
Query: 1465 WEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPH--GLLLSAAVSPSKQVINAAYDVK 1522
WEYP PD D +F + ++++ A + G+ ++++ P+K I+AA
Sbjct: 287 WEYPGSIGAGNPNSPD-DGANFAILIQQITDAKISNLKGISIASSADPAK--IDAANIPA 343
Query: 1523 ALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDD 1558
+ + I++MTYD+ D K H +Y P D
Sbjct: 344 LMDAGVTGINLMTYDFFTLGDGKLSHHTNIYRDPSD 379
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 7/179 (3%)
Query: 456 KVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFD-FAGLHFDWNYPVCWQ 514
+++ ++IGGW+ S +S++ R F++ + F +RF F+ L DW YP
Sbjct: 237 ELEFSLSIGGWSMSG--LFSEIAKDEILRTNFVEGIKDFFQRFPMFSHLDIDWEYPGSIG 294
Query: 515 ADCSKQHKADKGNFVKLIQELKAEFDKHDYSIAVGISGYKEILEVAYDFPALNDH-VEFM 573
A + D NF LIQ++ + I++ S ++ A + PAL D V +
Sbjct: 295 A-GNPNSPDDGANFAILIQQITDAKISNLKGISIASSADPAKIDAA-NIPALMDAGVTGI 352
Query: 574 SLMSYDYHGAWEGITGLVSPLNSRPGEPYPNYNINTAL-KLIDELGGDKRKIVIGVPFY 631
+LM+YD+ +G + + P + Y Y+I+ A+ LIDE D + I IG Y
Sbjct: 353 NLMTYDFFTLGDGKLSHHTNIYRDPSDVYSKYSIDDAVTHLIDEKKVDPKAIFIGYAGY 411
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 2206 EGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSHNNKLD-LEQGFYEKITKFNERGIQVI 2264
+GK P D DG++ + F + + R + K L GF ++ ++ ++
Sbjct: 184 KGKTIPVDPDGAVLASINCGFTKWEAGDANERYNQEKAKGLLGGF--RLLHEADKELEFS 241
Query: 2265 LAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLE-FYGFNGLEFAWEYP 2314
L+IGGWS S +S + D R NFV + +F + F F+ L+ WEYP
Sbjct: 242 LSIGGWS--MSGLFSEIAKDEILRTNFVEGIKDFFQRFPMFSHLDIDWEYP 290
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 128/322 (39%), Gaps = 53/322 (16%)
Query: 70 KGGYKSFLGLKEANPELKVYLAV-----KSNFVSITSDRESRLNFISSVLEMFDMY-KFD 123
KG F L EA+ EL+ L++ F I D R NF+ + + F + F
Sbjct: 222 KGLLGGFRLLHEADKELEFSLSIGGWSMSGLFSEIAKDEILRTNFVEGIKDFFQRFPMFS 281
Query: 124 GLDLNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTS---PGVIDR 180
LD++ + P + ++ ++F+ IQ+++ N +++ S P ID
Sbjct: 282 HLDIDWEYPG---SIGAGNPNSPDDGANFAILIQQITDAKISNLKGISIASSADPAKIDA 338
Query: 181 KT--SLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNI-QVTSTIANFNNIESA 237
+L+D V ++L+ F + K + NI + S + + +I+ A
Sbjct: 339 ANIPALMDAGVTG--INLMTYDFFT-------LGDGKLSHHTNIYRDPSDVYSKYSIDDA 389
Query: 238 VYNWI-KKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTE---GKYTQMPGYLA 293
V + I +K P+ I IG Y + R+ T P E G YT L
Sbjct: 390 VTHLIDEKKVDPKAIFIG-------YAGYTRNAKNATITTSIPSEEALKGTYTDANQTLG 442
Query: 294 FFEVCNKFKDKTWRHFTD------SNGEPFM---VKKDEW---------ITYENNDSIRR 335
FE H+ D NG + V K ++ I+ + S+R
Sbjct: 443 SFEYSVLEWTDIICHYMDFEKGEGRNGYKLVHDKVAKADYLYSEATKVFISLDTPRSVRD 502
Query: 336 KMNYIKDRHLGGAMLWTLDLDD 357
K Y+KD+ LGG +W+ D D+
Sbjct: 503 KGRYVKDKGLGGLFIWSGDQDN 524
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 2328 WTVVRDSLGARGPYAYN--GKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDD 2381
+ +V D + A+ Y Y+ K+++S D R +R K + +K GLGG +WS D D+
Sbjct: 470 YKLVHDKV-AKADYLYSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDN 524
>pdb|4A5Q|A Chain A, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|B Chain B, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|C Chain C, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|D Chain D, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|E Chain E, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
Length = 546
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 107/436 (24%), Positives = 163/436 (37%), Gaps = 96/436 (22%)
Query: 1709 DEFKIVCYFTNWAWY---------RQSGGKYLPSDI------DSDLCTHVIYGFAVLDTD 1753
D+F ++CYFT+W+ Y R +GG+ +DI D +IY F L D
Sbjct: 70 DDFNVLCYFTDWSQYDPRIINKEIRDTGGR--SADILRLNTPDGRPFKRLIYSFGGLIGD 127
Query: 1754 Q---------------LVIKPHDTWADLDNKFY-------------------------EK 1773
+ + P D A+ K E+
Sbjct: 128 KKYSADGNASIAVRLGVATDPDDAIANHKGKTIPVDPDGAVLASINCGFTKWEAGDANER 187
Query: 1774 VTALKKKGV--------------KVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNF 1819
K KG+ + +L+IGGW S +S + + R+ F+ + +F
Sbjct: 188 YNQEKAKGLLGGFRLLHEADKELEFSLSIGGW--SMSGLFSEIAKDEILRTNFVEGIKDF 245
Query: 1820 ILEH-NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPS 1878
F LD+DWEYP P D FA LI+++ A + +S A S
Sbjct: 246 FQRFPMFSHLDIDWEYPGSIGAGNPNSP-DDGANFAILIQQITDAKISNLKGISIASSAD 304
Query: 1879 KAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHY 1938
A ID A +M + I++MTYD+ D K H +Y P+D + YS+
Sbjct: 305 PAKIDAANIPALMDAGVTGINLMTYDFFTLGDGKLSHHTNIYRDPSDVY----SKYSIDD 360
Query: 1939 WVSHGADRKKVIFGMPMYG-QSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYE--- 1994
V+H D KKV G +T KN S A G T A L +E
Sbjct: 361 AVTHLIDEKKVDPKAIFIGYAGYTRNAKNATITTSIPSEEALKGTYTDANQTLGSFEYSV 420
Query: 1995 ------ICDKIQ------KDGWVVVRDRKRRIG-PYAFKGDQWVGFDDQAMIHHKAEFVK 2041
IC + ++G+ +V D+ + Y+ ++ D + K +VK
Sbjct: 421 LEWTDIICHYMDFEKGEGRNGYKLVHDKVAKADYLYSEATKVFISLDTPRSVRDKGRYVK 480
Query: 2042 YNDLGGAMIWALDLDD 2057
LGG IW+ D D+
Sbjct: 481 DKGLGGLFIWSGDQDN 496
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 1406 RVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY-QFDGLDLD 1464
R++ K ++ SL+IGGW S+ G +S + R F+E + F ++ F LD+D
Sbjct: 201 RLLHEADKELEFSLSIGGW--SMSGLFSEIAKDEILRTNFVEGIKDFFQRFPMFSHLDID 258
Query: 1465 WEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPH--GLLLSAAVSPSKQVINAAYDVK 1522
WEYP PD D +F + ++++ A + G+ ++++ P+K I+AA
Sbjct: 259 WEYPGSIGAGNPNSPD-DGANFAILIQQITDAKISNLKGISIASSADPAK--IDAANIPA 315
Query: 1523 ALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDD 1558
+ + I++MTYD+ D K H +Y P D
Sbjct: 316 LMDAGVTGINLMTYDFFTLGDGKLSHHTNIYRDPSD 351
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 7/179 (3%)
Query: 456 KVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFD-FAGLHFDWNYPVCWQ 514
+++ ++IGGW+ S +S++ R F++ + F +RF F+ L DW YP
Sbjct: 209 ELEFSLSIGGWSMSG--LFSEIAKDEILRTNFVEGIKDFFQRFPMFSHLDIDWEYPGSIG 266
Query: 515 ADCSKQHKADKGNFVKLIQELKAEFDKHDYSIAVGISGYKEILEVAYDFPALNDH-VEFM 573
A + D NF LIQ++ + I++ S ++ A + PAL D V +
Sbjct: 267 A-GNPNSPDDGANFAILIQQITDAKISNLKGISIASSADPAKIDAA-NIPALMDAGVTGI 324
Query: 574 SLMSYDYHGAWEGITGLVSPLNSRPGEPYPNYNINTAL-KLIDELGGDKRKIVIGVPFY 631
+LM+YD+ +G + + P + Y Y+I+ A+ LIDE D + I IG Y
Sbjct: 325 NLMTYDFFTLGDGKLSHHTNIYRDPSDVYSKYSIDDAVTHLIDEKKVDPKAIFIGYAGY 383
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 2206 EGKYSPEDIDGSLCTHLVYAFADLDEQELVIRSHNNKLD-LEQGFYEKITKFNERGIQVI 2264
+GK P D DG++ + F + + R + K L GF ++ ++ ++
Sbjct: 156 KGKTIPVDPDGAVLASINCGFTKWEAGDANERYNQEKAKGLLGGF--RLLHEADKELEFS 213
Query: 2265 LAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLE-FYGFNGLEFAWEYP 2314
L+IGGWS S +S + D R NFV + +F + F F+ L+ WEYP
Sbjct: 214 LSIGGWS--MSGLFSEIAKDEILRTNFVEGIKDFFQRFPMFSHLDIDWEYP 262
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 128/322 (39%), Gaps = 53/322 (16%)
Query: 70 KGGYKSFLGLKEANPELKVYLAV-----KSNFVSITSDRESRLNFISSVLEMFDMY-KFD 123
KG F L EA+ EL+ L++ F I D R NF+ + + F + F
Sbjct: 194 KGLLGGFRLLHEADKELEFSLSIGGWSMSGLFSEIAKDEILRTNFVEGIKDFFQRFPMFS 253
Query: 124 GLDLNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTS---PGVIDR 180
LD++ + P + ++ ++F+ IQ+++ N +++ S P ID
Sbjct: 254 HLDIDWEYPG---SIGAGNPNSPDDGANFAILIQQITDAKISNLKGISIASSADPAKIDA 310
Query: 181 KT--SLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNI-QVTSTIANFNNIESA 237
+L+D V ++L+ F + K + NI + S + + +I+ A
Sbjct: 311 ANIPALMDAGVTG--INLMTYDFFT-------LGDGKLSHHTNIYRDPSDVYSKYSIDDA 361
Query: 238 VYNWI-KKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTE---GKYTQMPGYLA 293
V + I +K P+ I IG Y + R+ T P E G YT L
Sbjct: 362 VTHLIDEKKVDPKAIFIG-------YAGYTRNAKNATITTSIPSEEALKGTYTDANQTLG 414
Query: 294 FFEVCNKFKDKTWRHFTD------SNGEPFM---VKKDEW---------ITYENNDSIRR 335
FE H+ D NG + V K ++ I+ + S+R
Sbjct: 415 SFEYSVLEWTDIICHYMDFEKGEGRNGYKLVHDKVAKADYLYSEATKVFISLDTPRSVRD 474
Query: 336 KMNYIKDRHLGGAMLWTLDLDD 357
K Y+KD+ LGG +W+ D D+
Sbjct: 475 KGRYVKDKGLGGLFIWSGDQDN 496
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 2328 WTVVRDSLGARGPYAYN--GKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDD 2381
+ +V D + A+ Y Y+ K+++S D R +R K + +K GLGG +WS D D+
Sbjct: 442 YKLVHDKV-AKADYLYSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDN 496
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A From
Vibrio Harveyi
Length = 584
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 93/424 (21%), Positives = 159/424 (37%), Gaps = 91/424 (21%)
Query: 1715 CYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGF-----------------------AVLD 1751
YF W Y G Y ++ D TH++YGF A
Sbjct: 142 TYFVEWGIY---GRDYTVDNMPVDNLTHILYGFIPICGPNESVKSVGGNSFNALQTACRG 198
Query: 1752 TDQLVIKPHDTWADLDNKF--------------YEKVTALKKKG--VKVTLAIGGWNDSA 1795
+ + HD WA F Y + ALK++ +K+ +IGGW S
Sbjct: 199 VNDYEVVIHDPWAAYQKSFPQAGHEYSTPIKGNYAMLMALKQRNPDLKIIPSIGGWTLS- 257
Query: 1796 GNKYSRLVNSQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQG-PASDKQGF 1853
+ + V+ + R F+A V F+ F DG+D+DW +P +G P +D +
Sbjct: 258 -DPFYDFVDKKN-RDTFVASVKKFLKTWKFYDGVDIDWMFPGGGGAAADKGDPVNDGPAY 315
Query: 1854 ADLIKELRAAFNPHDLL------LSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHG 1907
L++ELR + + L++A+ I++ D + +D+I MTYD++G
Sbjct: 316 IALMRELRVMLDELEAETGRTYELTSAIGVGYDKIEDV-DYADAVQYMDYIFAMTYDFYG 374
Query: 1908 QWDKKTGHVAPMY----ALPND-------------TTPTFNANYSLHYWVSHGADRKKVI 1950
W+ GH +Y P P + A+ + ++ G K++
Sbjct: 375 GWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTADNGIQLLLAQGVPANKLV 434
Query: 1951 FGMPMYGQSF------TLADKNKNGLNSQTYGGAEAGENTRA---------RGFLAYYEI 1995
G MYG+ + TL D N + T G G + +G ++
Sbjct: 435 LGTAMYGRGWEGVTPDTLTDPNDPMTGTAT--GKLKGSTAQGVWEDGVIDYKGIKSFMLG 492
Query: 1996 CDKIQKDGWVVVRDRKRRIGPYAF--KGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWAL 2053
+ +G+ D + P+ + + + FDD + K + K L G W +
Sbjct: 493 ANNTGINGFEYGYDAQAE-APWVWNRSTGELITFDDHRSVLAKGNYAKSLGLAGLFSWEI 551
Query: 2054 DLDD 2057
D D+
Sbjct: 552 DADN 555
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 87/370 (23%), Positives = 152/370 (41%), Gaps = 95/370 (25%)
Query: 457 VKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDF-AGLHFDWNYPVCWQA 515
+KI+ +IGGWT S + + + NR F+ SV FL+ + F G+ DW +P A
Sbjct: 245 LKIIPSIGGWTLS--DPFYDFVDK-KNRDTFVASVKKFLKTWKFYDGVDIDWMFPGGGGA 301
Query: 516 DCSKQHKADKG-NFVKLIQELKAEFDK--------HDYSIAVGISGYKEILEVAYDFPAL 566
K + G ++ L++EL+ D+ ++ + A+G+ GY +I +V D+
Sbjct: 302 AADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGV-GYDKIEDV--DYADA 358
Query: 567 NDHVEFMSLMSYDYHGAWEGITGLVSPLN----SRP-----------GEPY--PNYNINT 609
+++++ M+YD++G W + G + L RP GEPY P Y +
Sbjct: 359 VQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTADN 418
Query: 610 ALKLIDELGGDKRKIVIGVPFYGQSY------TLKLDKEHGLGAETDGPGLAGEYTQ--- 660
++L+ G K+V+G YG+ + TL + G T L G Q
Sbjct: 419 GIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATG--KLKGSTAQGVW 476
Query: 661 QPGMLAYYEICYRIKTRKWTVQRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQ 720
+ G++ Y I + + + N + E+G A+ + P
Sbjct: 477 EDGVIDYKGI------KSFMLGANNTGINGF---------EYGYDAQAEAP--------- 512
Query: 721 PGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQGDQWVSYEDPTSLTEKVKFIKSNGYAG 780
W R+T L ++++D S+ K + KS G AG
Sbjct: 513 -----------------WVWNRSTGEL----------ITFDDHRSVLAKGNYAKSLGLAG 545
Query: 781 IMAWTIDLDD 790
+ +W ID D+
Sbjct: 546 LFSWEIDADN 555
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 14/160 (8%)
Query: 1404 YERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DG 1460
Y ++ LK++ +K+ +IGGW +L + V+ R F+ V KFL ++F DG
Sbjct: 232 YAMLMALKQRNPDLKIIPSIGGW--TLSDPFYDFVDKKN-RDTFVASVKKFLKTWKFYDG 288
Query: 1461 LDLDWEYPTCWQVNCDAG-PDSDKESFGLFVRELH------QAFKPHGLLLSAAVSPSKQ 1513
+D+DW +P D G P +D ++ +REL +A L++A+
Sbjct: 289 VDIDWMFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGVGYD 348
Query: 1514 VINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLY 1553
I D + +D+I MTYD++G W+ GH LY
Sbjct: 349 KIEDV-DYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALY 387
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 69/334 (20%), Positives = 131/334 (39%), Gaps = 51/334 (15%)
Query: 69 IKGGYKSFLGLKEANPELKVYLAVKS--------NFVSITSDRESRLNFISSVLEMFDMY 120
IKG Y + LK+ NP+LK+ ++ +FV D+++R F++SV + +
Sbjct: 228 IKGNYAMLMALKQRNPDLKIIPSIGGWTLSDPFYDFV----DKKNRDTFVASVKKFLKTW 283
Query: 121 KF-DGLDLNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRR------NNYQLTLT 173
KF DG+D++ P + + N+ + ++EL L Y+LT +
Sbjct: 284 KFYDGVDIDWMFPGGGGAAADKGDPV-NDGPAYIALMRELRVMLDELEAETGRTYELT-S 341
Query: 174 SPGVIDRKTSLVDISVVAPLVDLILLKSFN-----NDHMDDEVVP-----VKPNTKVNIQ 223
+ GV K VD + +D I +++ N+ + ++P
Sbjct: 342 AIGVGYDKIEDVDYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGG 401
Query: 224 VTSTIANFNNIESAVYNWIK----KGARPEQIIIGIPFFGKSYR------LFNRSEYGLG 273
V + N I+ +G ++++G +G+ + L + ++ G
Sbjct: 402 VDENGEPYKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTG 461
Query: 274 AT---VKGPGTEGKY----TQMPGYLAFFEVCNKFKDKTWRHFTDSNGEPFMV---KKDE 323
+KG +G + G +F N + + D+ E V E
Sbjct: 462 TATGKLKGSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGE 521
Query: 324 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 357
IT++++ S+ K NY K L G W +D D+
Sbjct: 522 LITFDDHRSVLAKGNYAKSLGLAGLFSWEIDADN 555
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure Of Mutant
W275g
pdb|3ART|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Dequalinium
pdb|3ARU|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Pentoxifylline
pdb|3AS0|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Sanguinarine
pdb|3AS1|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Chelerythrine
pdb|3AS2|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Propentofylline
pdb|3AS3|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With 2-(Imidazolin-
2-Yl)-5-Isothiocyanatobenzofuran
Length = 584
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/424 (21%), Positives = 159/424 (37%), Gaps = 91/424 (21%)
Query: 1715 CYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGF-----------------------AVLD 1751
YF W Y G Y ++ D TH++YGF A
Sbjct: 142 TYFVEWGIY---GRDYTVDNMPVDNLTHILYGFIPICGPNESVKSVGGNSFNALQTACRG 198
Query: 1752 TDQLVIKPHDTWADLDNKF--------------YEKVTALKKKG--VKVTLAIGGWNDSA 1795
+ + HD WA F Y + ALK++ +K+ +IGG S
Sbjct: 199 VNDYEVVIHDPWAAYQKSFPQAGHEYSTPIKGNYAMLMALKQRNPDLKIIPSIGGGTLS- 257
Query: 1796 GNKYSRLVNSQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQG-PASDKQGF 1853
+ + V+ + R F+A V F+ F DG+D+DWE+P +G P +D +
Sbjct: 258 -DPFYDFVDKKN-RDTFVASVKKFLKTWKFYDGVDIDWEFPGGGGAAADKGDPVNDGPAY 315
Query: 1854 ADLIKELRAAFNPHDLL------LSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHG 1907
L++ELR + + L++A+ I++ D + +D+I MTYD++G
Sbjct: 316 IALMRELRVMLDELEAETGRTYELTSAIGVGYDKIEDV-DYADAVQYMDYIFAMTYDFYG 374
Query: 1908 QWDKKTGHVAPMY----ALPND-------------TTPTFNANYSLHYWVSHGADRKKVI 1950
W+ GH +Y P P + A+ + ++ G K++
Sbjct: 375 GWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTADNGIQLLLAQGVPANKLV 434
Query: 1951 FGMPMYGQSF------TLADKNKNGLNSQTYGGAEAGENTRA---------RGFLAYYEI 1995
G MYG+ + TL D N + T G G + +G ++
Sbjct: 435 LGTAMYGRGWEGVTPDTLTDPNDPMTGTAT--GKLKGSTAQGVWEDGVIDYKGIKSFMLG 492
Query: 1996 CDKIQKDGWVVVRDRKRRIGPYAFK--GDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWAL 2053
+ +G+ D + P+ + + + FDD + K + K L G W +
Sbjct: 493 ANNTGINGFEYGYDAQAE-APWVWNRSTGELITFDDHRSVLAKGNYAKSLGLAGLFSWEI 551
Query: 2054 DLDD 2057
D D+
Sbjct: 552 DADN 555
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 95/370 (25%)
Query: 457 VKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDF-AGLHFDWNYPVCWQA 515
+KI+ +IGG T S + + + NR F+ SV FL+ + F G+ DW +P A
Sbjct: 245 LKIIPSIGGGTLS--DPFYDFVDK-KNRDTFVASVKKFLKTWKFYDGVDIDWEFPGGGGA 301
Query: 516 DCSKQHKADKG-NFVKLIQELKAEFDK--------HDYSIAVGISGYKEILEVAYDFPAL 566
K + G ++ L++EL+ D+ ++ + A+G+ GY +I +V D+
Sbjct: 302 AADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGV-GYDKIEDV--DYADA 358
Query: 567 NDHVEFMSLMSYDYHGAWEGITGLVSPLN----SRP-----------GEPY--PNYNINT 609
+++++ M+YD++G W + G + L RP GEPY P Y +
Sbjct: 359 VQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTADN 418
Query: 610 ALKLIDELGGDKRKIVIGVPFYGQSY------TLKLDKEHGLGAETDGPGLAGEYTQ--- 660
++L+ G K+V+G YG+ + TL + G T L G Q
Sbjct: 419 GIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATG--KLKGSTAQGVW 476
Query: 661 QPGMLAYYEICYRIKTRKWTVQRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQ 720
+ G++ Y I + + + N + E+G A+ + P
Sbjct: 477 EDGVIDYKGI------KSFMLGANNTGINGF---------EYGYDAQAEAP--------- 512
Query: 721 PGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQGDQWVSYEDPTSLTEKVKFIKSNGYAG 780
W R+T L ++++D S+ K + KS G AG
Sbjct: 513 -----------------WVWNRSTGEL----------ITFDDHRSVLAKGNYAKSLGLAG 545
Query: 781 IMAWTIDLDD 790
+ +W ID D+
Sbjct: 546 LFSWEIDADN 555
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 14/160 (8%)
Query: 1404 YERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DG 1460
Y ++ LK++ +K+ +IGG +L + V+ R F+ V KFL ++F DG
Sbjct: 232 YAMLMALKQRNPDLKIIPSIGG--GTLSDPFYDFVDKKN-RDTFVASVKKFLKTWKFYDG 288
Query: 1461 LDLDWEYPTCWQVNCDAG-PDSDKESFGLFVRELH------QAFKPHGLLLSAAVSPSKQ 1513
+D+DWE+P D G P +D ++ +REL +A L++A+
Sbjct: 289 VDIDWEFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGVGYD 348
Query: 1514 VINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLY 1553
I D + +D+I MTYD++G W+ GH LY
Sbjct: 349 KIEDV-DYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALY 387
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/330 (20%), Positives = 131/330 (39%), Gaps = 43/330 (13%)
Query: 69 IKGGYKSFLGLKEANPELKVYLAVKSNFVSIT----SDRESRLNFISSVLEMFDMYKF-D 123
IKG Y + LK+ NP+LK+ ++ +S D+++R F++SV + +KF D
Sbjct: 228 IKGNYAMLMALKQRNPDLKIIPSIGGGTLSDPFYDFVDKKNRDTFVASVKKFLKTWKFYD 287
Query: 124 GLDLNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRR------NNYQLTLTSPGV 177
G+D++ + P + + N+ + ++EL L Y+LT ++ GV
Sbjct: 288 GVDIDWEFPGGGGAAADKGDPV-NDGPAYIALMRELRVMLDELEAETGRTYELT-SAIGV 345
Query: 178 IDRKTSLVDISVVAPLVDLILLKSFN-----NDHMDDEVVP-----VKPNTKVNIQVTST 227
K VD + +D I +++ N+ + ++P V
Sbjct: 346 GYDKIEDVDYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDEN 405
Query: 228 IANFNNIESAVYNWIK----KGARPEQIIIGIPFFGKSYR------LFNRSEYGLGAT-- 275
+ N I+ +G ++++G +G+ + L + ++ G
Sbjct: 406 GEPYKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATG 465
Query: 276 -VKGPGTEGKY----TQMPGYLAFFEVCNKFKDKTWRHFTDSNGEPFMV---KKDEWITY 327
+KG +G + G +F N + + D+ E V E IT+
Sbjct: 466 KLKGSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGELITF 525
Query: 328 ENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 357
+++ S+ K NY K L G W +D D+
Sbjct: 526 DDHRSVLAKGNYAKSLGLAGLFSWEIDADN 555
>pdb|4DWS|A Chain A, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 129/306 (42%), Gaps = 31/306 (10%)
Query: 1773 KVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEH-NFDGLDLD 1831
K A+ K + + +IGGW S + +S L + R F+A VV+F + F +D+D
Sbjct: 204 KAHAMGHK-LDLAFSIGGW--SLSSYFSALAENPDERRVFVASVVDFFVRFPMFSCVDID 260
Query: 1832 WEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN-----PHDLLLSAAVSPSKAVIDNAY 1886
WEYP + D + + LIKELR+A + + +S A S A + +
Sbjct: 261 WEYPGGGGDEGNISSDXDGENYVLLIKELRSALDSRFGYSNRXEISIACSGVXAXLKXSN 320
Query: 1887 DIPVMSENLDWISVMTYDYHGQ-WDKKTGHVAPMYALPNDTTPT----FNANYSLHYWVS 1941
+++ LD I +M+YD+ G W GH +Y+ P D +A ++ Y +
Sbjct: 321 IDQLVANGLDNIYLMSYDFFGTIWADYIGHHTNLYS-PKDPGEQELFDLSAEAAIDYLHN 379
Query: 1942 H-GADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICD--- 1997
G +K+ G YG+S D L ++ Y T G +++I
Sbjct: 380 ELGIPMEKIHLGYANYGRSAVGGD-----LTTRQYTXNGPALGTMENGAPEFFDIVXNYM 434
Query: 1998 ------KIQKDGWVVVRDRKRRIG-PYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMI 2050
+ K+G+V++ D ++ ++ D + K E+ N LGG
Sbjct: 435 DAEHSLSMGKNGFVLMTDTNADADFLFSEAXGHFISLDTPRTVXQKGEYAAKNKLGGVFS 494
Query: 2051 WALDLD 2056
W+ D D
Sbjct: 495 WSGDQD 500
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 13/182 (7%)
Query: 1415 VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY-QFDGLDLDWEYPTCWQV 1473
+ ++ +IGGW SL +S L + R+ F+ VV F +++ F +D+DWEYP
Sbjct: 212 LDLAFSIGGW--SLSSYFSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGD 269
Query: 1474 NCDAGPDSDKESFGLFVRELHQAFK-----PHGLLLSAAVSPSKQVINAAYDVKALSESL 1528
+ D D E++ L ++EL A + +S A S + + + ++ L
Sbjct: 270 EGNISSDXDGENYVLLIKELRSALDSRFGYSNRXEISIACSGVXAXLKXSNIDQLVANGL 329
Query: 1529 DWISVMTYDYHGQ-WDKKTGHVAPLYEHPD---DDFFYFNANFTMNYWMKK-GAPSRKLV 1583
D I +M+YD+ G W GH LY D + F +A ++Y + G P K+
Sbjct: 330 DNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPMEKIH 389
Query: 1584 MG 1585
+G
Sbjct: 390 LG 391
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 2239 HNNKLDLEQGFYEKITKFNERGIQVILA--IGGWSDSRSDKYSRLVNDIPARRNFVRHVT 2296
N L G E K + G ++ LA IGGWS S +S L + RR FV V
Sbjct: 188 QNRAAGLLGGLRELQXKAHAMGHKLDLAFSIGGWS--LSSYFSALAENPDERRVFVASVV 245
Query: 2297 EF-LEFYGFNGLEFAWEYP 2314
+F + F F+ ++ WEYP
Sbjct: 246 DFFVRFPMFSCVDIDWEYP 264
>pdb|4DWS|C Chain C, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 130/310 (41%), Gaps = 31/310 (10%)
Query: 1769 KFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEH-NFDG 1827
+ +K A+ K + + +IGGW S + +S L + R F+A VV+F + F
Sbjct: 200 ELQKKAHAMGHK-LDLAFSIGGW--SLSSYFSALAENPDERRVFVASVVDFFVRFPMFSC 256
Query: 1828 LDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN-----PHDLLLSAAVSPSKAVI 1882
+D+DWEYP + D + + LIKELR+A + + +S A S A +
Sbjct: 257 VDIDWEYPGGGGDEGNISSDXDGENYVLLIKELRSALDSRFGYSNRXEISIACSGVXAXL 316
Query: 1883 DNAYDIPVMSENLDWISVMTYDYHGQ-WDKKTGHVAPMYALPNDTTPT----FNANYSLH 1937
+ +++ LD I +M+YD+ G W GH +Y+ P D +A ++
Sbjct: 317 KKSNIDQLVANGLDNIYLMSYDFFGTIWADYIGHHTNLYS-PKDPGEQELFDLSAEAAID 375
Query: 1938 YWVSH-GADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEIC 1996
Y + G + + G YG+S D L ++ Y T G +++I
Sbjct: 376 YLHNELGIPMEXIHLGYANYGRSAVGGD-----LTTRQYTXNGPALGTMENGAPEFFDIV 430
Query: 1997 D---------KIQKDGWVVVRDRKRRIG-PYAFKGDQWVGFDDQAMIHHKAEFVKYNDLG 2046
+ K+G+V++ D ++ ++ D + K E+ N LG
Sbjct: 431 XNYMDAEHSLSMGKNGFVLMTDTNADADFLFSEAXGHFISLDTPRTVKQKGEYAAKNKLG 490
Query: 2047 GAMIWALDLD 2056
G W+ D D
Sbjct: 491 GVFSWSGDQD 500
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%)
Query: 1415 VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY-QFDGLDLDWEYPTCWQV 1473
+ ++ +IGGW SL +S L + R+ F+ VV F +++ F +D+DWEYP
Sbjct: 212 LDLAFSIGGW--SLSSYFSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGD 269
Query: 1474 NCDAGPDSDKESFGLFVRELHQAFK-----PHGLLLSAAVSPSKQVINAAYDVKALSESL 1528
+ D D E++ L ++EL A + +S A S + + + ++ L
Sbjct: 270 EGNISSDXDGENYVLLIKELRSALDSRFGYSNRXEISIACSGVXAXLKKSNIDQLVANGL 329
Query: 1529 DWISVMTYDYHGQ-WDKKTGHVAPLYEHPD---DDFFYFNANFTMNYWMKK-GAPSRKLV 1583
D I +M+YD+ G W GH LY D + F +A ++Y + G P +
Sbjct: 330 DNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPMEXIH 389
Query: 1584 MG 1585
+G
Sbjct: 390 LG 391
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 2239 HNNKLDLEQGFYEKITKFNERGIQVILA--IGGWSDSRSDKYSRLVNDIPARRNFVRHVT 2296
N L G E K + G ++ LA IGGWS S +S L + RR FV V
Sbjct: 188 QNRAAGLLGGLRELQKKAHAMGHKLDLAFSIGGWS--LSSYFSALAENPDERRVFVASVV 245
Query: 2297 EF-LEFYGFNGLEFAWEYP 2314
+F + F F+ ++ WEYP
Sbjct: 246 DFFVRFPMFSCVDIDWEYP 264
>pdb|4DWS|D Chain D, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 130/310 (41%), Gaps = 31/310 (10%)
Query: 1769 KFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEH-NFDG 1827
+ +K A+ K + + +IGGW S + +S L + R F+A VV+F + F
Sbjct: 200 ELQKKAHAMGHK-LDLAFSIGGW--SLSSYFSALAENPDERRVFVASVVDFFVRFPMFSC 256
Query: 1828 LDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN-----PHDLLLSAAVSPSKAVI 1882
+D+DWEYP + D + + LIKELR+A + + +S A S A +
Sbjct: 257 VDIDWEYPGGGGDEGNISSDKDGENYVLLIKELRSALDSRFGYSNRXEISIACSGVXAXL 316
Query: 1883 DNAYDIPVMSENLDWISVMTYDYHGQ-WDKKTGHVAPMYALPNDTTPT----FNANYSLH 1937
+ +++ LD I +M+YD+ G W GH +Y+ P D +A ++
Sbjct: 317 KKSNIDQLVANGLDNIYLMSYDFFGTIWADYIGHHTNLYS-PKDPGEQELFDLSAEAAID 375
Query: 1938 YWVSH-GADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEIC 1996
Y + G + + G YG+S D L ++ Y T G +++I
Sbjct: 376 YLHNELGIPMEXIHLGYANYGRSAVGGD-----LTTRQYTXNGPALGTMENGAPEFFDIV 430
Query: 1997 D---------KIQKDGWVVVRDRKRRIG-PYAFKGDQWVGFDDQAMIHHKAEFVKYNDLG 2046
+ K+G+V++ D ++ ++ D + K E+ N LG
Sbjct: 431 KNYMDAEHSLSMGKNGFVLMTDTNADADFLFSEAKGHFISLDTPRTVKQKGEYAAKNKLG 490
Query: 2047 GAMIWALDLD 2056
G W+ D D
Sbjct: 491 GVFSWSGDQD 500
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%)
Query: 1415 VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY-QFDGLDLDWEYPTCWQV 1473
+ ++ +IGGW SL +S L + R+ F+ VV F +++ F +D+DWEYP
Sbjct: 212 LDLAFSIGGW--SLSSYFSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGD 269
Query: 1474 NCDAGPDSDKESFGLFVRELHQAFK-----PHGLLLSAAVSPSKQVINAAYDVKALSESL 1528
+ D D E++ L ++EL A + +S A S + + + ++ L
Sbjct: 270 EGNISSDKDGENYVLLIKELRSALDSRFGYSNRXEISIACSGVXAXLKKSNIDQLVANGL 329
Query: 1529 DWISVMTYDYHGQ-WDKKTGHVAPLYEHPD---DDFFYFNANFTMNYWMKK-GAPSRKLV 1583
D I +M+YD+ G W GH LY D + F +A ++Y + G P +
Sbjct: 330 DNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPMEXIH 389
Query: 1584 MG 1585
+G
Sbjct: 390 LG 391
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 2239 HNNKLDLEQGFYEKITKFNERGIQVILA--IGGWSDSRSDKYSRLVNDIPARRNFVRHVT 2296
N L G E K + G ++ LA IGGWS S +S L + RR FV V
Sbjct: 188 QNRAAGLLGGLRELQKKAHAMGHKLDLAFSIGGWS--LSSYFSALAENPDERRVFVASVV 245
Query: 2297 EF-LEFYGFNGLEFAWEYP 2314
+F + F F+ ++ WEYP
Sbjct: 246 DFFVRFPMFSCVDIDWEYP 264
>pdb|4DWS|B Chain B, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 129/310 (41%), Gaps = 31/310 (10%)
Query: 1769 KFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEH-NFDG 1827
+ +K A+ K + + +IGGW S + +S L + R F+A VV+F + F
Sbjct: 200 ELQKKAHAMGHK-LDLAFSIGGW--SLSSYFSALAENPDERRVFVASVVDFFVRFPMFSC 256
Query: 1828 LDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN-----PHDLLLSAAVSPSKAVI 1882
+D+DWEYP + D + + LI ELR+A + + +S A S A +
Sbjct: 257 VDIDWEYPGGGGDEGNISSDXDGENYVLLIXELRSALDSRFGYSNRXEISIACSGVXAXL 316
Query: 1883 DNAYDIPVMSENLDWISVMTYDYHGQ-WDKKTGHVAPMYALPNDTTPT----FNANYSLH 1937
+ +++ LD I +M+YD+ G W GH +Y+ P D +A ++
Sbjct: 317 KXSNIDQLVANGLDNIYLMSYDFFGTIWADYIGHHTNLYS-PKDPGEQELFDLSAEAAID 375
Query: 1938 YWVSH-GADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEIC 1996
Y + G + + G YG+S D L ++ Y T G +++I
Sbjct: 376 YLHNELGIPMEXIHLGYANYGRSAVGGD-----LTTRQYTXNGPALGTMENGAPEFFDIV 430
Query: 1997 D---------KIQKDGWVVVRDRKRRIG-PYAFKGDQWVGFDDQAMIHHKAEFVKYNDLG 2046
+ K+G+V++ D ++ ++ D + K E+ N LG
Sbjct: 431 KNYMDAEHSLSMGKNGFVLMTDTNADADFLFSEAKGHFISLDTPRTVKQKGEYAAKNKLG 490
Query: 2047 GAMIWALDLD 2056
G W+ D D
Sbjct: 491 GVFSWSGDQD 500
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 13/182 (7%)
Query: 1415 VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY-QFDGLDLDWEYPTCWQV 1473
+ ++ +IGGW SL +S L + R+ F+ VV F +++ F +D+DWEYP
Sbjct: 212 LDLAFSIGGW--SLSSYFSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGD 269
Query: 1474 NCDAGPDSDKESFGLFVRELHQAFK-----PHGLLLSAAVSPSKQVINAAYDVKALSESL 1528
+ D D E++ L + EL A + +S A S + + + ++ L
Sbjct: 270 EGNISSDXDGENYVLLIXELRSALDSRFGYSNRXEISIACSGVXAXLKXSNIDQLVANGL 329
Query: 1529 DWISVMTYDYHGQ-WDKKTGHVAPLYEHPD---DDFFYFNANFTMNYWMKK-GAPSRKLV 1583
D I +M+YD+ G W GH LY D + F +A ++Y + G P +
Sbjct: 330 DNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPMEXIH 389
Query: 1584 MG 1585
+G
Sbjct: 390 LG 391
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 2239 HNNKLDLEQGFYEKITKFNERGIQVILA--IGGWSDSRSDKYSRLVNDIPARRNFVRHVT 2296
N L G E K + G ++ LA IGGWS S +S L + RR FV V
Sbjct: 188 QNRAAGLLGGLRELQKKAHAMGHKLDLAFSIGGWS--LSSYFSALAENPDERRVFVASVV 245
Query: 2297 EF-LEFYGFNGLEFAWEYP 2314
+F + F F+ ++ WEYP
Sbjct: 246 DFFVRFPMFSCVDIDWEYP 264
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 88/378 (23%), Positives = 161/378 (42%), Gaps = 77/378 (20%)
Query: 1735 IDSDLCTHVIYGFAVL------DTDQLVIKP---HDTW------ADLDNKFYEKVTALKK 1779
+D TH+ Y F ++ +T+ + P H+ W ADL +K+ AL+K
Sbjct: 49 LDVRQITHLNYSFGLIYNDEKDETNAALKDPAHLHEIWLSPKVQADL-----QKLPALRK 103
Query: 1780 KG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYP-- 1835
+ +KV L++GGW +S + ++R+ FI I ++ DG+DLDWE+P
Sbjct: 104 QNPDLKVLLSVGGW---GARGFSGAAATAESRAVFIRSAQKIIQQYGLDGIDLDWEFPVN 160
Query: 1836 KCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDIPVMSENL 1895
W + Q PA D+ F L+K LR A L++ AV + + D+ ++ L
Sbjct: 161 GAWGLVASQ-PA-DRDNFTALLKSLREAVGEQK-LVTIAVGANAESPKSWVDVKAVAPVL 217
Query: 1896 DWISVMTYD--YHGQWDKKTGHVA---PMYALPNDTTPTFNANYSLHYWVSHGADRKKVI 1950
++I++ TYD Y Q+ + + P A + ++A++ ++ +++ G +
Sbjct: 218 NYINLXTYDXAYGTQYFNSNLYDSSHWPTVAAAD----KYSADFVVNNYLAAGLKPSQXN 273
Query: 1951 FGMPMYGQ----------SFTLADKNKNGLNSQTYGG------AEAGENTRARGFLAYYE 1994
G+ YG+ +T AD N + +G A G + ++ Y +
Sbjct: 274 LGIGFYGRVPKRAVEPGIDWTKADAQNNPVTQPYFGPQQIALFASLGYDLSKDTYVKYND 333
Query: 1995 ICDKIQKD---------------GWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEF 2039
I K+ D W+ V+ + G F + +++ + KA++
Sbjct: 334 IVGKLLNDPQKRFTEHWDDEAKVPWLSVQSAE---GKPLFA----LSYENPRSVAIKADY 386
Query: 2040 VKYNDLGGAMIWALDLDD 2057
+K L GA W DD
Sbjct: 387 IKAKGLAGAXFWEYGADD 404
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 1379 GLGTDQEKENTFLKISELTYVHILFY--------ERVVTLKKKG--VKVSLAIGGWNDSL 1428
GL + EK+ T + + ++H ++ +++ L+K+ +KV L++GGW
Sbjct: 62 GLIYNDEKDETNAALKDPAHLHEIWLSPKVQADLQKLPALRKQNPDLKVLLSVGGWG--- 118
Query: 1429 GGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGL 1488
+S +A +R FI K + +Y DG+DLDWE+P A +D+++F
Sbjct: 119 ARGFSGAAATAESRAVFIRSAQKIIQQYGLDGIDLDWEFPVNGAWGLVASQPADRDNFTA 178
Query: 1489 FVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVKALSESLDWISVMTYD 1537
++ L +A L++ AV + + + DVKA++ L++I++ TYD
Sbjct: 179 LLKSLREAVGEQK-LVTIAVGANAESPKSWVDVKAVAPVLNYINLXTYD 226
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/333 (22%), Positives = 128/333 (38%), Gaps = 63/333 (18%)
Query: 69 IKGGYKSFLGLKEANPELKVYLAVKS----NFVSITSDRESRLNFISSVLEMFDMYKFDG 124
++ + L++ NP+LKV L+V F + ESR FI S ++ Y DG
Sbjct: 91 VQADLQKLPALRKQNPDLKVLLSVGGWGARGFSGAAATAESRAVFIRSAQKIIQQYGLDG 150
Query: 125 LDLNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSL 184
+DL+ + P + S +R +F+ ++ L + +T+ + S
Sbjct: 151 IDLDWEFPV--NGAWGLVASQPADRDNFTALLKSLREAVGEQKL-VTIAVGANAESPKSW 207
Query: 185 VDISVVAPLVDLILLKS---------FNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIE 235
VD+ VAP+++ I L + FN++ D P T A+ + +
Sbjct: 208 VDVKAVAPVLNYINLXTYDXAYGTQYFNSNLYDSSHWP-----------TVAAADKYSAD 256
Query: 236 SAVYNWIKKGARPEQIIIGIPFFGK----------------------SYRLFNRSEYGLG 273
V N++ G +P Q +GI F+G+ + F + L
Sbjct: 257 FVVNNYLAAGLKPSQXNLGIGFYGRVPKRAVEPGIDWTKADAQNNPVTQPYFGPQQIALF 316
Query: 274 ATVK---GPGTEGKYTQMPGYLA------FFEVCNKFKDKTWRHFTDSNGEPFMVKKDEW 324
A++ T KY + G L F E + W + G+P
Sbjct: 317 ASLGYDLSKDTYVKYNDIVGKLLNDPQKRFTEHWDDEAKVPWLSVQSAEGKPLFA----- 371
Query: 325 ITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 357
++YEN S+ K +YIK + L GA W DD
Sbjct: 372 LSYENPRSVAIKADYIKAKGLAGAXFWEYGADD 404
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 10/126 (7%)
Query: 457 VKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQAD 516
+K+L+++GGW +S ++ +R FI+S ++++ G+ DW +PV
Sbjct: 108 LKVLLSVGGW---GARGFSGAAATAESRAVFIRSAQKIIQQYGLDGIDLDWEFPVNGAWG 164
Query: 517 CSKQHKADKGNFVKLIQELK-AEFDKHDYSIAVGISGY--KEILEVAYDFPALNDHVEFM 573
AD+ NF L++ L+ A ++ +IAVG + K ++V P LN ++
Sbjct: 165 LVASQPADRDNFTALLKSLREAVGEQKLVTIAVGANAESPKSWVDVKAVAPVLN----YI 220
Query: 574 SLMSYD 579
+L +YD
Sbjct: 221 NLXTYD 226
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 65/140 (46%), Gaps = 16/140 (11%)
Query: 2187 AEPYKVICYYTSWAYLRQAEGKYSPEDIDGSLCTHLVYAFA-----DLDEQELVIR--SH 2239
A+P + Y+ + G + +D THL Y+F + DE ++ +H
Sbjct: 23 AQPLXSVGYFNGGGDVTAGPGG-DIDKLDVRQITHLNYSFGLIYNDEKDETNAALKDPAH 81
Query: 2240 NNKLDLE---QGFYEKITKFNERG--IQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRH 2294
+++ L Q +K+ ++ ++V+L++GGW + +S +R F+R
Sbjct: 82 LHEIWLSPKVQADLQKLPALRKQNPDLKVLLSVGGWG---ARGFSGAAATAESRAVFIRS 138
Query: 2295 VTEFLEFYGFNGLEFAWEYP 2314
+ ++ YG +G++ WE+P
Sbjct: 139 AQKIIQQYGLDGIDLDWEFP 158
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 758 VSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLDD 790
+SYE+P S+ K +IK+ G AG W DD
Sbjct: 372 LSYENPRSVAIKADYIKAKGLAGAXFWEYGADD 404
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 2349 LSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQNLC 2386
LSY++ R + K IK GL GA W DD L
Sbjct: 372 LSYENPRSVAIKADYIKAKGLAGAXFWEYGADDQNQLA 409
>pdb|3CZ8|A Chain A, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
pdb|3CZ8|B Chain B, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
Length = 319
Score = 47.4 bits (111), Expect = 9e-05, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 28/160 (17%)
Query: 1434 RLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVREL 1493
+++N+ TAR + ++ + + G+ +D+E QV+ +D++ F F+R+L
Sbjct: 88 QVLNNPTARTNLVNNIYDLVSTRGYGGVTIDFE-----QVSA-----ADRDLFTGFLRQL 137
Query: 1494 HQAFKPHGLLLSAAVSPSKQVINA----AYDVKALSESLDWISVMTYDYHGQWDKKTGHV 1549
+ G +L+ AV P+K N YD + ++++ +M YD+H + G V
Sbjct: 138 RDRLQAGGYVLTIAV-PAKTSDNIPWLRGYDYGGIGAVVNYMFIMAYDWH-HAGSEPGPV 195
Query: 1550 APLYEHPDDDFFYFNANFTMNYWMKKGAPSRKLVMGVHPL 1589
AP+ E T+ + + + PSRK+++GV PL
Sbjct: 196 APITE----------IRRTIEFTIAQ-VPSRKIIIGV-PL 223
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 48/260 (18%), Positives = 103/260 (39%), Gaps = 41/260 (15%)
Query: 99 ITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNXXXXXXLESIANERSDFSTFIQE 158
+ ++ +R N ++++ ++ + G+ ++ + + A +R F+ F+++
Sbjct: 89 VLNNPTARTNLVNNIYDLVSTRGYGGVTIDFEQVS------------AADRDLFTGFLRQ 136
Query: 159 LSSTLRRNNYQLTLTSPGVIDRKTSLV---DISVVAPLVDLILLKSFNNDHMDDEVVPVK 215
L L+ Y LT+ P + D + +V+ + + +++ H E PV
Sbjct: 137 LRDRLQAGGYVLTIAVPAKTSDNIPWLRGYDYGGIGAVVNYMFIMAYDWHHAGSEPGPVA 196
Query: 216 PNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGAT 275
P T++ + TIA + +IIIG+P +G + + Y G
Sbjct: 197 PITEIRRTIEFTIAQVPS---------------RKIIIGVPLYGYDWII----PYQPGTV 237
Query: 276 VKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRR 335
+ + Y A + +++ +R ++D G V W +E S+ R
Sbjct: 238 ASAISNQNAIERAMRYQAPIQYSAEYQSPFFR-YSDQQGRTHEV----W--FEGVRSMSR 290
Query: 336 KMNYIKDRHLGGAMLWTLDL 355
KM +++ L W L L
Sbjct: 291 KMQIVREYRLQAIGAWQLTL 310
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 36/162 (22%), Positives = 76/162 (46%), Gaps = 29/162 (17%)
Query: 1801 RLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKEL 1860
+++N+ AR+ + ++ + + + G+ +D+E Q A+D+ F +++L
Sbjct: 88 QVLNNPTARTNLVNNIYDLVSTRGYGGVTIDFE----------QVSAADRDLFTGFLRQL 137
Query: 1861 RAAFNPHDLLLSAAVSPSKAVIDN-----AYDIPVMSENLDWISVMTYDYHGQWDKKTGH 1915
R +L+ AV P+K DN YD + ++++ +M YD+H + G
Sbjct: 138 RDRLQAGGYVLTIAV-PAKTS-DNIPWLRGYDYGGIGAVVNYMFIMAYDWH-HAGSEPGP 194
Query: 1916 VAPMYALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYG 1957
VAP+ + ++ + ++ RK +I G+P+YG
Sbjct: 195 VAPITEI----------RRTIEFTIAQVPSRK-IIIGVPLYG 225
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 46/209 (22%), Positives = 88/209 (42%), Gaps = 36/209 (17%)
Query: 433 NPEADIDDNFYQRISSSPLVTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVL 492
N A I+ + +R++ +T+ + GG+ S E Q++++ + R + ++
Sbjct: 54 NDAAAIETTWQRRVTPLATITN------LTSGGF---STEIVHQVLNNPTARTNLVNNIY 104
Query: 493 TFLRRFDFAGLHFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKHDY--SIAVGI 550
+ + G+ D+ + AD+ F +++L+ Y +IAV
Sbjct: 105 DLVSTRGYGGVTIDF----------EQVSAADRDLFTGFLRQLRDRLQAGGYVLTIAVPA 154
Query: 551 SGYKEILEV-AYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPNYNINT 609
I + YD+ + V +M +M+YD+H A S PG P I
Sbjct: 155 KTSDNIPWLRGYDYGGIGAVVNYMFIMAYDWHHA-----------GSEPGPVAPITEIRR 203
Query: 610 ALKL-IDELGGDKRKIVIGVPFYGQSYTL 637
++ I ++ RKI+IGVP YG + +
Sbjct: 204 TIEFTIAQV--PSRKIIIGVPLYGYDWII 230
>pdb|3CO4|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
pdb|3FND|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
Length = 312
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 28/181 (15%)
Query: 1409 TLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYP 1468
T K VK+ +++ + G+++ +N AR+ I+ ++ F +Y+ DG D+D+E
Sbjct: 60 TAHKHNVKILISLA---KNSPGEFTTAINDPKARKELIQQIIAFTKEYKLDGFDIDYEEY 116
Query: 1469 TCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVKALSESL 1528
W D + S +F R L+ A K L + AV+ ++ +
Sbjct: 117 DNW--------DKNFPSLLVFARGLYLA-KEKNXLXTCAVNSRWLNYGTEWE-----QYF 162
Query: 1529 DWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGAPSRKLVMGVHP 1588
D+I++ +YD DK H + DDF + YW ++ S+ ++G P
Sbjct: 163 DYINLXSYDRGAFTDKPVQHASY------DDFVK-----DLKYWNEQCRASKSKIVGGLP 211
Query: 1589 L 1589
Sbjct: 212 F 212
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 104/280 (37%), Gaps = 66/280 (23%)
Query: 1779 KKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCW 1838
K VK+ +++ +S G +++ +N +AR + I ++ F E+ DG D+D+E W
Sbjct: 63 KHNVKILISLA--KNSPG-EFTTAINDPKARKELIQQIIAFTKEYKLDGFDIDYEEYDNW 119
Query: 1839 QVDCKQGPASDKQGFADLIKELRAAF--NPHDLLLSAAVSPSKAVIDNAYDIPVMSENLD 1896
+ F L+ R + + L + AV+ ++ + D
Sbjct: 120 D-----------KNFPSLLVFARGLYLAKEKNXLXTCAVNSRWLNYGTEWE-----QYFD 163
Query: 1897 WISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSH-GADRKKVIFGMPM 1955
+I++ +YD DK H A +D L YW A + K++ G+P
Sbjct: 164 YINLXSYDRGAFTDKPVQH-----ASYDDFVK------DLKYWNEQCRASKSKIVGGLPF 212
Query: 1956 YGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYY--EICDKIQKDGWVVVRDRKRR 2013
YG S+ G + R G L + E D K
Sbjct: 213 YGYSW----------EESLQGAVDDVRGIRYSGILKHLGNEAAD-------------KDN 249
Query: 2014 IGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWAL 2053
IG + G + I +K +F+K ND G IW L
Sbjct: 250 IGKTYYNG--------RPTIANKCKFIKENDYAGVXIWQL 281
>pdb|3N11|A Chain A, Crystal Stricture Of Wild-Type Chitinase From Bacillus
Cereus Nctu2
pdb|3N12|A Chain A, Crystal Stricture Of Chitinase In Complex With Zinc Atoms
From Bacillus Cereus Nctu2
Length = 333
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 1767 DNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFD 1826
D F ++ LK KG KV L+IGG N L+ A+ +FI + + I ++ FD
Sbjct: 58 DADFKSDISYLKSKGKKVVLSIGGQNGVV------LLPDNAAKDRFINSIQSLIDKYGFD 111
Query: 1827 GLDLDWE---YPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1883
G+D+D E Y + K I+ + + P D LLS A P A +
Sbjct: 112 GIDIDLESGIYLNGNDTNFKNPTTPQIVNLISAIRTISDHYGP-DFLLSMA--PETAYVQ 168
Query: 1884 NAY 1886
Y
Sbjct: 169 GGY 171
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 1403 FYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLD 1462
F + LK KG KV L+IGG N + L+ A+ RFI + + KY FDG+D
Sbjct: 61 FKSDISYLKSKGKKVVLSIGGQNGVV------LLPDNAAKDRFINSIQSLIDKYGFDGID 114
Query: 1463 LDWE 1466
+D E
Sbjct: 115 IDLE 118
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 87 KVYLAVKS-NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVK 130
KV L++ N V + D ++ FI+S+ + D Y FDG+D++++
Sbjct: 74 KVVLSIGGQNGVVLLPDNAAKDRFINSIQSLIDKYGFDGIDIDLE 118
>pdb|2Y8V|A Chain A, Structure Of Chitinase, Chic, From Aspergillus Fumigatus.
pdb|2Y8V|B Chain B, Structure Of Chitinase, Chic, From Aspergillus Fumigatus.
pdb|2Y8V|C Chain C, Structure Of Chitinase, Chic, From Aspergillus Fumigatus.
pdb|2Y8V|D Chain D, Structure Of Chitinase, Chic, From Aspergillus Fumigatus
Length = 290
Score = 44.3 bits (103), Expect = 9e-04, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 1712 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWAD--LDNK 1769
+++CY R LP ++ TH+I L+ D I +D D + N
Sbjct: 14 RVICYHQTLCPNRGDYVSVLPLVKNNTGVTHIIIAAFHLNEDPGHITLNDDPPDHEMYNP 73
Query: 1770 FYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLD 1829
+ +V LK+ GVKV +GG +A Y L Q+ ++ ++ + H DGLD
Sbjct: 74 LWAEVPVLKRSGVKVMGMLGG---AAQGSYRCLDGDQEKFERYYQPLLAMVRRHQLDGLD 130
Query: 1830 LDWE 1833
LD E
Sbjct: 131 LDVE 134
Score = 35.8 bits (81), Expect = 0.32, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 1403 FYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLD 1462
+ V LK+ GVKV +GG + G Y L +R+ + ++ + ++Q DGLD
Sbjct: 74 LWAEVPVLKRSGVKVMGMLGG---AAQGSYRCLDGDQEKFERYYQPLLAMVRRHQLDGLD 130
Query: 1463 LDWE 1466
LD E
Sbjct: 131 LDVE 134
>pdb|3N15|A Chain A, Crystal Stricture Of E145q Chitinase In Complex With Nag
From Bacillus Cereus Nctu2
Length = 333
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 1767 DNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFD 1826
D F ++ LK KG KV L+IGG N L+ A+ +FI + + I ++ FD
Sbjct: 58 DADFKSDISYLKSKGKKVVLSIGGQNGVV------LLPDNAAKDRFINSIQSLIDKYGFD 111
Query: 1827 GLDLDWE---YPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1883
G+D+D + Y + K I+ + + P D LLS A P A +
Sbjct: 112 GIDIDLQSGIYLNGNDTNFKNPTTPQIVNLISAIRTISDHYGP-DFLLSMA--PETAYVQ 168
Query: 1884 NAY 1886
Y
Sbjct: 169 GGY 171
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 1403 FYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLD 1462
F + LK KG KV L+IGG N + L+ A+ RFI + + KY FDG+D
Sbjct: 61 FKSDISYLKSKGKKVVLSIGGQNGVV------LLPDNAAKDRFINSIQSLIDKYGFDGID 114
Query: 1463 LDWE 1466
+D +
Sbjct: 115 IDLQ 118
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 87 KVYLAVKS-NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVK 130
KV L++ N V + D ++ FI+S+ + D Y FDG+D++++
Sbjct: 74 KVVLSIGGQNGVVLLPDNAAKDRFINSIQSLIDKYGFDGIDIDLQ 118
>pdb|3N17|A Chain A, Crystal Stricture Of E145qY227F CHITINASE IN COMPLEX WITH
NAG FROM Bacillus Cereus Nctu2
Length = 333
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 1767 DNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFD 1826
D F ++ LK KG KV L+IGG N L+ A+ +FI + + I ++ FD
Sbjct: 58 DADFKSDISYLKSKGKKVVLSIGGQNGVV------LLPDNAAKDRFINSIQSLIDKYGFD 111
Query: 1827 GLDLDWE---YPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1883
G+D+D + Y + K I+ + + P D LLS A P A +
Sbjct: 112 GIDIDLQSGIYLNGNDTNFKNPTTPQIVNLISAIRTISDHYGP-DFLLSMA--PETAYVQ 168
Query: 1884 NAY 1886
Y
Sbjct: 169 GGY 171
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 1403 FYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLD 1462
F + LK KG KV L+IGG N + L+ A+ RFI + + KY FDG+D
Sbjct: 61 FKSDISYLKSKGKKVVLSIGGQNGVV------LLPDNAAKDRFINSIQSLIDKYGFDGID 114
Query: 1463 LDWE 1466
+D +
Sbjct: 115 IDLQ 118
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 87 KVYLAVKS-NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVK 130
KV L++ N V + D ++ FI+S+ + D Y FDG+D++++
Sbjct: 74 KVVLSIGGQNGVVLLPDNAAKDRFINSIQSLIDKYGFDGIDIDLQ 118
>pdb|3N18|A Chain A, Crystal Stricture Of E145gY227F CHITINASE IN COMPLEX WITH
NAG FROM Bacillus Cereus Nctu2
pdb|3N1A|A Chain A, Crystal Stricture Of E145gY227F CHITINASE IN COMPLEX WITH
CYCLO-(L- His-L-Pro) From Bacillus Cereus Nctu2
Length = 333
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 1767 DNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFD 1826
D F ++ LK KG KV L+IGG N L+ A+ +FI + + I ++ FD
Sbjct: 58 DADFKSDISYLKSKGKKVVLSIGGQNGVV------LLPDNAAKDRFINSIQSLIDKYGFD 111
Query: 1827 GLDLDWE---YPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1883
G+D+D Y + K I+ + + P D LLS A P A +
Sbjct: 112 GIDIDLGSGIYLNGNDTNFKNPTTPQIVNLISAIRTISDHYGP-DFLLSMA--PETAYVQ 168
Query: 1884 NAY 1886
Y
Sbjct: 169 GGY 171
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 1403 FYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLD 1462
F + LK KG KV L+IGG N + L+ A+ RFI + + KY FDG+D
Sbjct: 61 FKSDISYLKSKGKKVVLSIGGQNGVV------LLPDNAAKDRFINSIQSLIDKYGFDGID 114
Query: 1463 LD 1464
+D
Sbjct: 115 ID 116
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 87 KVYLAVKS-NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNV 129
KV L++ N V + D ++ FI+S+ + D Y FDG+D+++
Sbjct: 74 KVVLSIGGQNGVVLLPDNAAKDRFINSIQSLIDKYGFDGIDIDL 117
>pdb|3N13|A Chain A, Crystal Stricture Of D143a Chitinase In Complex With Nag
From Bacillus Cereus Nctu2
Length = 333
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 1767 DNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFD 1826
D F ++ LK KG KV L+IGG N L+ A+ +FI + + I ++ FD
Sbjct: 58 DADFKSDISYLKSKGKKVVLSIGGQNGVV------LLPDNAAKDRFINSIQSLIDKYGFD 111
Query: 1827 GLDLDWE---YPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1883
G+D+ E Y + K I+ + + P D LLS A P A +
Sbjct: 112 GIDIALESGIYLNGNDTNFKNPTTPQIVNLISAIRTISDHYGP-DFLLSMA--PETAYVQ 168
Query: 1884 NAY 1886
Y
Sbjct: 169 GGY 171
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 1403 FYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLD 1462
F + LK KG KV L+IGG N + L+ A+ RFI + + KY FDG+D
Sbjct: 61 FKSDISYLKSKGKKVVLSIGGQNGVV------LLPDNAAKDRFINSIQSLIDKYGFDGID 114
Query: 1463 LDWE 1466
+ E
Sbjct: 115 IALE 118
>pdb|1EDT|A Chain A, Crystal Structure Of Endo-Beta-N-Acetylglucosaminidase H At
1.9 Angstroms Resolution: Active Site Geometry And
Substrate Recognition
Length = 271
Score = 39.7 bits (91), Expect = 0.022, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 1766 LDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVN--SQQARSKFIAHVVNFILEH 1823
LDN ++ L+++G+KV L++ G + AG N SQQA S F + + + ++
Sbjct: 69 LDNAV-TQIRPLQQQGIKVLLSVLGNHQGAG-----FANFPSQQAASAFAKQLSDAVAKY 122
Query: 1824 NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1883
DG+D D EY + Q + F L+ LRA P ++ + P+ + +
Sbjct: 123 GLDGVDFDDEYAEYGNNGTAQ---PNDSSFVHLVTALRANM-PDKIISLYNIGPAASRL- 177
Query: 1884 NAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALP 1923
+Y +S+ D+ Y+G W P ALP
Sbjct: 178 -SYGGVDVSDKFDY---AWNPYYGTWQ------VPGIALP 207
>pdb|1DQC|A Chain A, Solution Structure Of Tachycitin, An Antimicrobial Protein
With Chitin-Binding Function
Length = 74
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 986 GEYYPV--DG------ECGSYYRCILGTLKKESCAPGLHWNKVNKICDWPKSAKC 1032
G Y P DG C S+Y C + E+C GLH+N K+CDWP A C
Sbjct: 7 GRYSPCLDDGPNVNLYSCCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKAGC 61
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 1057 KSLHWNKVNKICDWPKSAKCEDKNMETPMKST 1088
K LH+N K+CDWP A C N E + T
Sbjct: 42 KGLHYNAYLKVCDWPSKAGCTSVNKECHLWKT 73
>pdb|1C90|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, E132q Mutant
pdb|1C90|B Chain B, Endo-Beta-N-Acetylglucosaminidase H, E132q Mutant
Length = 265
Score = 38.5 bits (88), Expect = 0.052, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 1766 LDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVN--SQQARSKFIAHVVNFILEH 1823
LDN ++ L+++G+KV L++ G + AG N SQQA S F + + + ++
Sbjct: 64 LDNAV-TQIRPLQQQGIKVLLSVLGNHQGAG-----FANFPSQQAASAFAKQLSDAVAKY 117
Query: 1824 NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1883
DG+D D +Y + Q + F L+ LRA P ++ + P+ + +
Sbjct: 118 GLDGVDFDDQYAEYGNNGTAQ---PNDSSFVHLVTALRANM-PDKIISLYNIGPAASRL- 172
Query: 1884 NAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALP 1923
+Y +S+ D+ Y+G W P ALP
Sbjct: 173 -SYGGVDVSDKFDY---AWNPYYGTWQ------VPGIALP 202
>pdb|1C91|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, E132d
Length = 265
Score = 38.1 bits (87), Expect = 0.056, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 1766 LDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVN--SQQARSKFIAHVVNFILEH 1823
LDN ++ L+++G+KV L++ G + AG N SQQA S F + + + ++
Sbjct: 64 LDNAV-TQIRPLQQQGIKVLLSVLGNHQGAG-----FANFPSQQAASAFAKQLSDAVAKY 117
Query: 1824 NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1883
DG+D D +Y + Q + F L+ LRA P ++ + P+ + +
Sbjct: 118 GLDGVDFDDDYAEYGNNGTAQ---PNDSSFVHLVTALRANM-PDKIISLYNIGPAASRL- 172
Query: 1884 NAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALP 1923
+Y +S+ D+ Y+G W P ALP
Sbjct: 173 -SYGGVDVSDKFDY---AWNPYYGTWQ------VPGIALP 202
>pdb|1C8X|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130e Mutant
Length = 265
Score = 37.7 bits (86), Expect = 0.076, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 1766 LDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVN--SQQARSKFIAHVVNFILEH 1823
LDN ++ L+++G+KV L++ G + AG N SQQA S F + + + ++
Sbjct: 64 LDNAV-TQIRPLQQQGIKVLLSVLGNHQGAG-----FANFPSQQAASAFAKQLSDAVAKY 117
Query: 1824 NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1883
DG+D + EY + Q + F L+ LRA P ++ + P+ + +
Sbjct: 118 GLDGVDFEDEYAEYGNNGTAQ---PNDSSFVHLVTALRANM-PDKIISLYNIGPAASRL- 172
Query: 1884 NAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALP 1923
+Y +S+ D+ Y+G W P ALP
Sbjct: 173 -SYGGVDVSDKFDY---AWNPYYGTWQ------VPGIALP 202
>pdb|1C3F|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130n Mutant
Length = 265
Score = 37.7 bits (86), Expect = 0.082, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 1766 LDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVN--SQQARSKFIAHVVNFILEH 1823
LDN ++ L+++G+KV L++ G + AG N SQQA S F + + + ++
Sbjct: 64 LDNAV-TQIRPLQQQGIKVLLSVLGNHQGAG-----FANFPSQQAASAFAKQLSDAVAKY 117
Query: 1824 NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1883
DG+D + EY + Q + F L+ LRA P ++ + P+ + +
Sbjct: 118 GLDGVDFNDEYAEYGNNGTAQ---PNDSSFVHLVTALRANM-PDKIISLYNIGPAASRL- 172
Query: 1884 NAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALP 1923
+Y +S+ D+ Y+G W P ALP
Sbjct: 173 -SYGGVDVSDKFDY---AWNPYYGTWQ------VPGIALP 202
>pdb|4AC1|X Chain X, The Structure Of A Fungal Endo-Beta-N-Acetylglucosaminidase
From Glycosyl Hydrolase Family 18, At 1.3a Resolution
Length = 283
Score = 37.4 bits (85), Expect = 0.090, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 27/153 (17%)
Query: 1767 DNKFY---EKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEH 1823
D FY + +K+ GVKV +GG + N + + + + I+
Sbjct: 58 DPHFYTLWNETITMKQAGVKVMGMVGGAAPGSFNTQTLDSPDSATFEHYYGQLRDAIVNF 117
Query: 1824 NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1883
+G+DLD E P +QG LI LRA F P D L++ A P + ++
Sbjct: 118 QLEGMDLDVEQPM------------SQQGIDRLIARLRADFGP-DFLITLA--PVASALE 162
Query: 1884 NAYDIPVMS---------ENLDWISVMTYDYHG 1907
++ ++ S ++DW + Y G
Sbjct: 163 DSSNLSGFSYTALQQTQGNDIDWYNTQFYSGFG 195
Score = 31.6 bits (70), Expect = 5.3, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Query: 1403 FYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNS--ATARQRFIEHVVKFLLKYQFDG 1460
+ +T+K+ GVKV +GG + G ++ ++S + + + + ++ +Q +G
Sbjct: 64 LWNETITMKQAGVKVMGMVGG--AAPGSFNTQTLDSPDSATFEHYYGQLRDAIVNFQLEG 121
Query: 1461 LDLDWEYPTCWQ--------VNCDAGPD 1480
+DLD E P Q + D GPD
Sbjct: 122 MDLDVEQPMSQQGIDRLIARLRADFGPD 149
>pdb|1C92|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, E132a Mutant
Length = 265
Score = 37.0 bits (84), Expect = 0.12, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 23/160 (14%)
Query: 1766 LDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVN--SQQARSKFIAHVVNFILEH 1823
LDN ++ L+++G+KV L++ G + AG N SQQA S F + + + ++
Sbjct: 64 LDNAV-TQIRPLQQQGIKVLLSVLGNHQGAG-----FANFPSQQAASAFAKQLSDAVAKY 117
Query: 1824 NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1883
DG+D D Y + Q + F L+ LRA P ++ + P+ + +
Sbjct: 118 GLDGVDFDDAYAEYGNNGTAQ---PNDSSFVHLVTALRANM-PDKIISLYNIGPAASRL- 172
Query: 1884 NAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALP 1923
+Y +S+ D+ Y+G W P ALP
Sbjct: 173 -SYGGVDVSDKFDY---AWNPYYGTWQ------VPGIALP 202
>pdb|3IAN|A Chain A, Crystal Structure Of A Chitinase From Lactococcus Lactis
Subsp. Lactis
Length = 321
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 1767 DNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFD 1826
D +F +++ L +G V +A+GG + + L SQ+ S F+ ++ + + FD
Sbjct: 65 DTEFRAEISKLNAEGKSVLIALGG-----ADAHIELKKSQE--SDFVNEIIRLVDTYGFD 117
Query: 1827 GLDLDWEYPKCWQVDCK 1843
GLD+D E D +
Sbjct: 118 GLDIDLEQAAIEAADNQ 134
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 2241 NKLDLEQGFYEKITKFNERGIQVILAIGGWSDSRSDKYSRLVNDIPARRNFVRHVTEFLE 2300
NK D E F +I+K N G V++A+GG K S+ +FV + ++
Sbjct: 62 NKTDTE--FRAEISKLNAEGKSVLIALGGADAHIELKKSQ-------ESDFVNEIIRLVD 112
Query: 2301 FYGFNGLEFAWE 2312
YGF+GL+ E
Sbjct: 113 TYGFDGLDIDLE 124
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 1403 FYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLD 1462
F + L +G V +A+GG + + K S+ F+ +++ + Y FDGLD
Sbjct: 68 FRAEISKLNAEGKSVLIALGGADAHIELKKSQ-------ESDFVNEIIRLVDTYGFDGLD 120
Query: 1463 LDWE 1466
+D E
Sbjct: 121 IDLE 124
Score = 31.2 bits (69), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 79 LKEANPELK-VYLAVKSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPAL 134
+ + N E K V +A+ I + +F++ ++ + D Y FDGLD++++ A+
Sbjct: 72 ISKLNAEGKSVLIALGGADAHIELKKSQESDFVNEIIRLVDTYGFDGLDIDLEQAAI 128
>pdb|1C8Y|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130a Mutant
Length = 265
Score = 36.6 bits (83), Expect = 0.18, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 23/160 (14%)
Query: 1766 LDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVN--SQQARSKFIAHVVNFILEH 1823
LDN ++ L+++G+KV L++ G + AG N SQQA S F + + + ++
Sbjct: 64 LDNAV-TQIRPLQQQGIKVLLSVLGNHQGAG-----FANFPSQQAASAFAKQLSDAVAKY 117
Query: 1824 NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1883
DG+D EY + Q + F L+ LRA P ++ + P+ + +
Sbjct: 118 GLDGVDFADEYAEYGNNGTAQ---PNDSSFVHLVTALRANM-PDKIISLYNIGPAASRL- 172
Query: 1884 NAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALP 1923
+Y +S+ D+ Y+G W P ALP
Sbjct: 173 -SYGGVDVSDKFDY---AWNPYYGTWQ------VPGIALP 202
>pdb|1C93|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130nE132Q DOUBLE
Mutant
Length = 265
Score = 36.6 bits (83), Expect = 0.20, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 1766 LDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVN--SQQARSKFIAHVVNFILEH 1823
LDN ++ L+++G+KV L++ G + AG N SQQA S F + + + ++
Sbjct: 64 LDNAV-TQIRPLQQQGIKVLLSVLGNHQGAG-----FANFPSQQAASAFAKQLSDAVAKY 117
Query: 1824 NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1883
DG+D + +Y + Q + F L+ LRA P ++ + P+ + +
Sbjct: 118 GLDGVDFNDQYAEYGNNGTAQ---PNDSSFVHLVTALRANM-PDKIISLYNIGPAASRL- 172
Query: 1884 NAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALP 1923
+Y +S+ D+ Y+G W P ALP
Sbjct: 173 -SYGGVDVSDKFDY---AWNPYYGTWQ------VPGIALP 202
>pdb|3SIM|A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase
From Crocus Vernus
pdb|3SIM|B Chain B, Crystallographic Structure Analysis Of Family 18 Chitinase
From Crocus Vernus
Length = 275
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 1772 EKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLD 1829
++++A+K V+V +++GG + + + + S + + I +N DG+D
Sbjct: 64 DQISAIKSSHPNVRVAVSLGGASVGSNTVQFQAASVDSWVSNAVTSLTRIIQRYNLDGID 123
Query: 1830 LDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDIP 1889
+D+E+ + +DK FA+ I L + ++ A++SP +V + Y +
Sbjct: 124 IDYEHFQN----------TDKNTFAECIGRLITTLKKNGVISFASISPFPSV--DEYYLA 171
Query: 1890 VMSENLDWISVMTYDYHGQWDKKT 1913
+ +E + I+ + Y + +D T
Sbjct: 172 LFNEYKNAINHINYQFKA-YDSST 194
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 51/102 (50%), Gaps = 14/102 (13%)
Query: 1415 VKVSLAIGGWNDSLGGKYSRLVNSATAR--QRFIEHVVKFLLKYQFDGLDLDWEYPTCWQ 1472
V+V++++GG S+G + ++ + + + + +Y DG+D+D+E+ +Q
Sbjct: 76 VRVAVSLGG--ASVGSNTVQFQAASVDSWVSNAVTSLTRIIQRYNLDGIDIDYEH---FQ 130
Query: 1473 VNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQV 1514
++DK +F + L K +G++ A++SP V
Sbjct: 131 -------NTDKNTFAECIGRLITTLKKNGVISFASISPFPSV 165
>pdb|3OB8|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OBA|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
Length = 1032
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 18/112 (16%)
Query: 549 GISGYKEILEVAYDFPALNDHVEFMSLMSYDYHGAWE-GITGLVSPLNSRPGEPYPNYNI 607
G+ K++ E YD+P N + ++ + GA + I P N
Sbjct: 921 GLYDSKDVEEFVYDYPQENGNHTDTHFLNIKFEGAGKLSIFQKEKPFN------------ 968
Query: 608 NTALKLIDELGGDKRKIVIGVPFYGQSYTLKLDKE-HGLGAETDGPGLAGEY 658
K+ DE G D+ V YG+ Y L+LD HG+G+E GP + +Y
Sbjct: 969 ---FKISDEYGVDEAAHACDVKRYGRHY-LRLDHAIHGVGSEACGPAVLDQY 1016
>pdb|3EBV|A Chain A, Crystal Structure Of Putative Chitinase A From Streptomyces
Coelicolor
Length = 302
Score = 34.7 bits (78), Expect = 0.59, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 1768 NKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDG 1827
++F V A + G KV +++GG K + VNS + + F V + E+ FDG
Sbjct: 62 DQFKADVRAKQAAGKKVIISVGG------EKGTVSVNSSASATNFANSVYSVXREYGFDG 115
Query: 1828 LDLDWE 1833
+D+D E
Sbjct: 116 VDIDLE 121
>pdb|3POH|A Chain A, Crystal Structure Of An Endo-Beta-N-Acetylglucosaminidase
(Bt_3987) From Bacteroides Thetaiotaomicron Vpi-5482 At
1.55 A Resolution
Length = 451
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 1777 LKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEY 1834
L+++GVKV L + G +D G ++L S+Q F V + +N DG++ D EY
Sbjct: 237 LRRRGVKVLLGLLGNHDITG--LAQL--SEQGAKDFAREVAQYCKAYNLDGVNYDDEY 290
>pdb|1JAX|A Chain A, Structure Of Coenzyme F420h2:nadp+ Oxidoreductase (Fno)
pdb|1JAX|B Chain B, Structure Of Coenzyme F420h2:nadp+ Oxidoreductase (Fno)
pdb|1JAY|A Chain A, Structure Of Coenzyme F420h2:nadp+ Oxidoreductase (Fno)
With Its Substrates Bound
pdb|1JAY|B Chain B, Structure Of Coenzyme F420h2:nadp+ Oxidoreductase (Fno)
With Its Substrates Bound
Length = 212
Score = 32.7 bits (73), Expect = 2.9, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 437 DIDDNFYQRISSSPLVTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTF-L 495
D+ + ++I SPLV + G+T SS +++++ +K + ++ T
Sbjct: 83 DLKNILREKIVVSPLVPVSR-----GAKGFTYSSERSAAEIVAEVLESEKVVSALHTIPA 137
Query: 496 RRFDFAGLHFDWNYPVCWQADCSKQ 520
RF FDW+ PVC D SK+
Sbjct: 138 ARFANLDEKFDWDVPVCGDDDESKK 162
>pdb|3BXW|B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like
Protein, Si-Clp
pdb|3BXW|A Chain A, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like
Protein, Si-Clp
Length = 393
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 20/102 (19%)
Query: 548 VGISGYKEILEVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPNYNI 607
+G+ +KE ++A P L+ SLM+YDY A +PG P +
Sbjct: 238 LGMFTHKEFEQLA---PVLDG----FSLMTYDYSTA------------HQPGPNAPLSWV 278
Query: 608 NTALKLIDELGGDKRKIVIGVPFYGQSYTLKLD-KEHGLGAE 648
++++D + KI++G+ FYG Y D +E +GA
Sbjct: 279 RACVQVLDPKSKWRSKILLGLNFYGMDYATSKDAREPVVGAR 320
>pdb|3EQA|A Chain A, Catalytic Domain Of Glucoamylase From Aspergillus Niger
Complexed With Tris And Glycerol
Length = 470
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 17/82 (20%)
Query: 379 EEPEPKVVCYVTN-WSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTL--SIQAGNPE 435
+ P+++CY+ + W+GS F+ N D D NTL SI +PE
Sbjct: 214 DSQAPEILCYLQSFWTGS------FILANFDSSRSGK--------DANTLLGSIHTFDPE 259
Query: 436 ADIDDNFYQRISSSPLVTHGKV 457
A DD+ +Q S L H +V
Sbjct: 260 AACDDSTFQPCSPRALANHKEV 281
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,839,754
Number of Sequences: 62578
Number of extensions: 3372383
Number of successful extensions: 8587
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 7270
Number of HSP's gapped (non-prelim): 577
length of query: 2417
length of database: 14,973,337
effective HSP length: 115
effective length of query: 2302
effective length of database: 7,776,867
effective search space: 17902347834
effective search space used: 17902347834
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)