Query psy4449
Match_columns 2417
No_of_seqs 1142 out of 4050
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 17:20:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4449hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02873 GH18_IDGF The IDGF's ( 100.0 1.2E-65 2.6E-70 653.9 37.6 364 1712-2077 1-413 (413)
2 cd02872 GH18_chitolectin_chito 100.0 9E-65 1.9E-69 644.0 36.6 356 1713-2077 1-362 (362)
3 cd02873 GH18_IDGF The IDGF's ( 100.0 1E-64 2.3E-69 645.4 35.8 373 384-810 1-413 (413)
4 cd02872 GH18_chitolectin_chito 100.0 6.1E-64 1.3E-68 636.3 33.8 358 385-810 1-362 (362)
5 COG3325 ChiA Chitinase [Carboh 100.0 2.3E-61 5E-66 573.5 26.8 371 376-812 31-438 (441)
6 COG3325 ChiA Chitinase [Carboh 100.0 3.4E-58 7.4E-63 546.5 26.7 359 1706-2078 33-437 (441)
7 cd02878 GH18_zymocin_alpha Zym 100.0 1.9E-57 4.1E-62 568.6 34.2 332 1712-2056 1-345 (345)
8 KOG2806|consensus 100.0 4.2E-58 9E-63 585.5 28.0 355 1709-2078 50-421 (432)
9 cd02878 GH18_zymocin_alpha Zym 100.0 6E-57 1.3E-61 564.1 33.7 333 384-789 1-345 (345)
10 KOG2806|consensus 100.0 4.2E-57 9.1E-62 576.3 27.2 358 380-811 49-421 (432)
11 cd06548 GH18_chitinase The GH1 100.0 3.7E-55 8.1E-60 545.1 27.9 298 385-789 1-322 (322)
12 cd06548 GH18_chitinase The GH1 100.0 1.1E-54 2.4E-59 540.9 30.3 296 1713-2056 1-322 (322)
13 cd02879 GH18_plant_chitinase_c 100.0 1.6E-54 3.4E-59 531.9 30.1 281 1711-2060 3-297 (299)
14 smart00636 Glyco_18 Glycosyl h 100.0 3.1E-54 6.7E-59 542.6 33.0 324 1712-2056 1-334 (334)
15 cd02879 GH18_plant_chitinase_c 100.0 2.5E-54 5.4E-59 530.1 27.2 282 383-793 3-297 (299)
16 smart00636 Glyco_18 Glycosyl h 100.0 6.8E-54 1.5E-58 539.5 30.4 326 384-789 1-334 (334)
17 PF00704 Glyco_hydro_18: Glyco 100.0 5.7E-48 1.2E-52 488.9 29.7 332 1711-2056 1-343 (343)
18 PF00704 Glyco_hydro_18: Glyco 100.0 5.9E-48 1.3E-52 488.7 26.2 334 383-789 1-343 (343)
19 cd02876 GH18_SI-CLP Stabilin-1 100.0 1.4E-47 3E-52 476.8 24.6 294 1712-2057 4-311 (318)
20 cd02875 GH18_chitobiase Chitob 100.0 1.1E-44 2.5E-49 453.5 31.8 301 1704-2063 29-346 (358)
21 cd02876 GH18_SI-CLP Stabilin-1 100.0 1.2E-45 2.6E-50 459.5 22.3 295 384-790 4-311 (318)
22 cd02874 GH18_CFLE_spore_hydrol 100.0 9.6E-44 2.1E-48 442.4 27.1 295 1712-2059 3-308 (313)
23 cd02875 GH18_chitobiase Chitob 100.0 7.9E-43 1.7E-47 436.9 29.4 297 380-796 33-346 (358)
24 cd06545 GH18_3CO4_chitinase Th 100.0 3.9E-41 8.5E-46 405.5 25.0 251 1713-2073 1-253 (253)
25 cd02874 GH18_CFLE_spore_hydrol 100.0 1E-40 2.2E-45 415.3 24.2 293 384-791 3-307 (313)
26 cd06545 GH18_3CO4_chitinase Th 100.0 9.2E-40 2E-44 393.7 22.9 210 385-635 1-212 (253)
27 cd06549 GH18_trifunctional GH1 100.0 1E-38 2.2E-43 392.4 25.0 288 1713-2058 2-295 (298)
28 cd06549 GH18_trifunctional GH1 100.0 1.1E-35 2.4E-40 365.6 24.0 289 385-791 2-295 (298)
29 cd00598 GH18_chitinase-like Th 100.0 5E-32 1.1E-36 318.9 21.9 175 1713-1904 1-177 (210)
30 cd06546 GH18_CTS3_chitinase GH 100.0 5E-31 1.1E-35 315.4 23.7 206 1712-1955 1-217 (256)
31 cd06546 GH18_CTS3_chitinase GH 100.0 1.1E-30 2.4E-35 312.5 23.8 206 384-630 1-217 (256)
32 cd00598 GH18_chitinase-like Th 100.0 1.9E-30 4.2E-35 305.5 19.8 177 385-579 1-177 (210)
33 cd02871 GH18_chitinase_D-like 100.0 1.9E-29 4E-34 312.2 26.6 223 1711-1956 1-248 (312)
34 cd02871 GH18_chitinase_D-like 100.0 1.5E-28 3.2E-33 304.2 23.9 223 383-631 1-248 (312)
35 cd06544 GH18_narbonin Narbonin 100.0 7.6E-29 1.6E-33 294.2 19.1 199 403-635 14-221 (253)
36 COG3858 Predicted glycosyl hyd 100.0 3.7E-28 8.1E-33 290.1 23.2 250 1773-2060 152-414 (423)
37 cd06544 GH18_narbonin Narbonin 100.0 1.8E-28 4E-33 291.0 20.2 199 1731-1960 14-221 (253)
38 COG3858 Predicted glycosyl hyd 99.9 3.2E-23 6.9E-28 248.2 19.4 243 72-360 151-414 (423)
39 cd06542 GH18_EndoS-like Endo-b 99.9 8.6E-23 1.9E-27 247.4 20.0 252 1712-2077 2-254 (255)
40 KOG4701|consensus 99.9 1.3E-21 2.7E-26 225.1 27.3 212 382-631 26-257 (568)
41 cd02877 GH18_hevamine_XipI_cla 99.9 6.8E-22 1.5E-26 238.2 19.3 203 384-631 2-229 (280)
42 KOG2091|consensus 99.9 6.8E-22 1.5E-26 224.2 16.0 295 1709-2056 77-384 (392)
43 cd06542 GH18_EndoS-like Endo-b 99.9 3.6E-21 7.8E-26 233.3 18.4 207 383-632 1-207 (255)
44 cd02877 GH18_hevamine_XipI_cla 99.8 3E-20 6.4E-25 224.0 21.1 183 1737-1956 22-229 (280)
45 cd06543 GH18_PF-ChiA-like PF-C 99.8 3.6E-19 7.8E-24 216.1 17.9 157 1737-1908 23-184 (294)
46 KOG2091|consensus 99.7 3.7E-17 8.1E-22 186.1 16.8 287 12-355 78-383 (392)
47 COG3469 Chitinase [Carbohydrat 99.7 1.4E-16 3.1E-21 176.2 18.2 222 1708-1955 23-266 (332)
48 cd06543 GH18_PF-ChiA-like PF-C 99.7 3.4E-17 7.3E-22 199.1 13.1 154 1371-1541 24-184 (294)
49 COG3469 Chitinase [Carbohydrat 99.7 1.5E-16 3.3E-21 176.0 10.5 190 1339-1545 25-221 (332)
50 KOG4701|consensus 99.2 1.4E-09 3.1E-14 126.8 21.6 151 1769-1955 91-256 (568)
51 PF01607 CBM_14: Chitin bindin 98.4 2.3E-07 4.9E-12 84.0 4.7 48 985-1032 5-53 (53)
52 PF01607 CBM_14: Chitin bindin 98.4 1.3E-07 2.7E-12 85.7 2.5 48 1140-1187 5-53 (53)
53 cd06547 GH85_ENGase Endo-beta- 98.2 5.6E-06 1.2E-10 103.5 11.4 86 1406-1500 51-138 (339)
54 smart00494 ChtBD2 Chitin-bindi 98.2 1.4E-06 3.1E-11 79.6 4.1 49 1140-1188 7-55 (56)
55 smart00494 ChtBD2 Chitin-bindi 98.2 1.5E-06 3.3E-11 79.5 4.1 49 1207-1255 7-55 (56)
56 cd06547 GH85_ENGase Endo-beta- 97.9 3.5E-05 7.5E-10 96.5 9.1 155 1773-1960 51-215 (339)
57 PF02638 DUF187: Glycosyl hydr 97.3 0.0013 2.9E-08 82.0 12.4 170 1402-1591 71-298 (311)
58 PF03644 Glyco_hydro_85: Glyco 97.2 0.00044 9.5E-09 85.9 6.5 84 1406-1499 47-133 (311)
59 PF13200 DUF4015: Putative gly 97.2 0.0027 6E-08 78.2 13.1 136 1401-1539 61-229 (316)
60 PF13200 DUF4015: Putative gly 97.1 0.016 3.5E-07 71.7 18.3 138 1769-1908 62-231 (316)
61 PF03644 Glyco_hydro_85: Glyco 97.0 0.00077 1.7E-08 83.7 5.5 156 1772-1959 46-209 (311)
62 PF02638 DUF187: Glycosyl hydr 96.5 0.0086 1.9E-07 74.9 10.1 135 1804-1957 134-298 (311)
63 PF11340 DUF3142: Protein of u 96.5 0.017 3.7E-07 64.8 10.7 65 1457-1536 42-107 (181)
64 PF11340 DUF3142: Protein of u 95.9 0.076 1.7E-06 59.8 11.9 84 1805-1903 22-107 (181)
65 KOG2331|consensus 93.3 0.51 1.1E-05 58.5 11.1 83 1774-1866 117-200 (526)
66 PF03427 CBM_19: Carbohydrate 91.4 0.38 8.3E-06 44.3 5.2 37 979-1017 20-56 (61)
67 KOG2331|consensus 90.2 0.52 1.1E-05 58.4 6.5 88 1409-1506 119-210 (526)
68 TIGR01370 cysRS possible cyste 89.6 1.4 3E-05 55.0 9.8 124 1772-1901 85-235 (315)
69 TIGR01370 cysRS possible cyste 88.3 6.1 0.00013 49.5 14.0 126 1405-1535 85-236 (315)
70 COG1649 Uncharacterized protei 87.6 1.6 3.4E-05 56.1 8.5 135 1402-1536 116-307 (418)
71 PF14883 GHL13: Hypothetical g 84.6 7.6 0.00016 47.3 11.6 196 1739-1955 30-262 (294)
72 TIGR02402 trehalose_TreZ malto 84.4 2.7 5.9E-05 57.0 9.0 87 1401-1499 160-267 (542)
73 PRK12568 glycogen branching en 81.0 5.6 0.00012 55.0 9.9 97 1400-1500 318-452 (730)
74 PRK05402 glycogen branching en 78.0 8.2 0.00018 54.5 10.4 99 1400-1500 314-448 (726)
75 cd02810 DHOD_DHPD_FMN Dihydroo 76.4 14 0.0003 46.2 10.9 111 1401-1535 83-197 (289)
76 KOG0260|consensus 75.3 10 0.00022 52.9 9.4 18 323-340 874-891 (1605)
77 PF14871 GHL6: Hypothetical gl 73.5 6 0.00013 43.3 5.7 66 1400-1465 43-132 (132)
78 PF14883 GHL13: Hypothetical g 73.2 42 0.00091 41.2 12.9 179 53-258 41-263 (294)
79 PLN03244 alpha-amylase; Provis 72.5 18 0.00039 49.9 10.7 64 1401-1464 441-531 (872)
80 KOG0260|consensus 72.5 14 0.00031 51.6 9.8 15 494-508 1022-1036(1605)
81 COG1306 Uncharacterized conser 72.5 7.5 0.00016 46.6 6.4 95 1443-1540 195-300 (400)
82 PRK14706 glycogen branching en 72.4 14 0.0003 51.2 10.1 99 1400-1500 216-348 (639)
83 cd02810 DHOD_DHPD_FMN Dihydroo 72.4 12 0.00026 46.7 8.9 109 74-201 87-197 (289)
84 TIGR02104 pulA_typeI pullulana 71.9 13 0.00028 51.5 9.7 84 1401-1500 229-339 (605)
85 PF14871 GHL6: Hypothetical gl 71.9 11 0.00023 41.4 7.2 62 1770-1832 46-132 (132)
86 PRK12313 glycogen branching en 71.8 11 0.00023 52.6 9.0 98 1400-1499 219-351 (633)
87 PLN02447 1,4-alpha-glucan-bran 71.0 20 0.00044 50.0 11.1 64 1401-1464 300-390 (758)
88 TIGR02402 trehalose_TreZ malto 70.5 13 0.00027 50.7 9.0 66 1768-1833 160-246 (542)
89 COG1306 Uncharacterized conser 69.8 8.8 0.00019 46.1 6.2 91 489-582 199-300 (400)
90 TIGR02103 pullul_strch alpha-1 69.2 19 0.00041 51.3 10.4 66 1768-1833 404-498 (898)
91 TIGR02103 pullul_strch alpha-1 68.9 13 0.00028 52.9 8.7 66 1401-1466 404-498 (898)
92 TIGR02102 pullulan_Gpos pullul 68.7 19 0.00041 52.4 10.4 66 1768-1833 555-644 (1111)
93 cd04735 OYE_like_4_FMN Old yel 68.3 15 0.00033 47.3 8.7 98 104-204 141-259 (353)
94 TIGR01515 branching_enzym alph 68.0 23 0.00051 49.0 10.9 65 1401-1465 206-296 (613)
95 PRK14705 glycogen branching en 67.9 19 0.0004 52.9 10.1 97 1401-1499 815-947 (1224)
96 PRK05402 glycogen branching en 67.8 23 0.0005 50.1 11.0 65 1767-1831 314-404 (726)
97 COG1649 Uncharacterized protei 67.7 7.9 0.00017 50.0 5.7 97 481-579 181-308 (418)
98 PRK14706 glycogen branching en 67.4 34 0.00073 47.5 12.1 65 1767-1831 216-306 (639)
99 PF03427 CBM_19: Carbohydrate 66.8 9.1 0.0002 35.7 4.3 21 2142-2162 35-55 (61)
100 cd04747 OYE_like_5_FMN Old yel 66.4 30 0.00065 44.6 10.6 95 105-202 142-257 (361)
101 cd04733 OYE_like_2_FMN Old yel 66.1 24 0.00051 45.3 9.7 94 105-202 147-258 (338)
102 cd02929 TMADH_HD_FMN Trimethyl 64.7 15 0.00033 47.5 7.7 157 41-201 51-259 (370)
103 PRK12313 glycogen branching en 64.7 33 0.00071 47.9 11.4 65 1767-1831 219-309 (633)
104 PRK12568 glycogen branching en 63.2 33 0.00071 47.9 10.6 99 1767-1867 318-452 (730)
105 PLN03244 alpha-amylase; Provis 62.7 52 0.0011 45.7 12.0 64 1768-1831 441-531 (872)
106 PRK13523 NADPH dehydrogenase N 62.5 31 0.00067 44.1 9.7 153 42-202 51-249 (337)
107 cd04734 OYE_like_3_FMN Old yel 62.4 35 0.00077 43.8 10.3 152 45-202 50-251 (343)
108 cd02929 TMADH_HD_FMN Trimethyl 62.4 1.1E+02 0.0024 39.7 14.9 132 1768-1901 83-258 (370)
109 PLN02960 alpha-amylase 62.3 37 0.00081 47.8 10.9 64 1401-1464 466-556 (897)
110 TIGR02102 pullulan_Gpos pullul 61.9 23 0.00051 51.5 9.3 66 1401-1466 555-644 (1111)
111 PLN02960 alpha-amylase 61.9 53 0.0011 46.4 12.1 65 1767-1831 465-556 (897)
112 TIGR02100 glgX_debranch glycog 61.1 28 0.00062 48.7 9.7 67 1400-1466 244-343 (688)
113 COG3889 Predicted solute bindi 61.1 7.7 0.00017 52.2 4.0 25 149-173 172-196 (872)
114 PF13199 Glyco_hydro_66: Glyco 59.7 18 0.00039 48.9 7.1 111 1396-1509 159-310 (559)
115 cd02801 DUS_like_FMN Dihydrour 59.6 20 0.00043 43.1 7.0 109 80-201 49-159 (231)
116 TIGR02104 pulA_typeI pullulana 59.3 40 0.00087 46.7 10.7 66 1768-1833 229-321 (605)
117 PRK13523 NADPH dehydrogenase N 57.6 64 0.0014 41.3 11.3 130 1768-1902 81-248 (337)
118 TIGR02100 glgX_debranch glycog 56.7 49 0.0011 46.4 10.8 66 1768-1833 245-343 (688)
119 cd04733 OYE_like_2_FMN Old yel 56.6 38 0.00083 43.4 9.2 92 1808-1902 147-257 (338)
120 PF10566 Glyco_hydro_97: Glyco 56.5 21 0.00045 44.0 6.3 86 1401-1509 73-158 (273)
121 cd02933 OYE_like_FMN Old yello 56.3 32 0.00069 44.1 8.3 93 106-202 151-263 (338)
122 PLN02447 1,4-alpha-glucan-bran 55.9 59 0.0013 45.6 11.2 65 1767-1831 299-390 (758)
123 cd02930 DCR_FMN 2,4-dienoyl-Co 55.7 55 0.0012 42.2 10.5 152 44-201 49-245 (353)
124 cd04734 OYE_like_3_FMN Old yel 55.7 76 0.0017 40.8 11.6 132 1768-1902 77-250 (343)
125 PF13199 Glyco_hydro_66: Glyco 53.1 21 0.00045 48.3 6.1 88 1804-1901 238-329 (559)
126 TIGR01515 branching_enzym alph 53.1 90 0.002 43.4 12.5 66 1767-1832 205-296 (613)
127 PRK10785 maltodextrin glucosid 52.5 26 0.00055 48.5 7.1 56 1437-1500 303-363 (598)
128 COG4724 Endo-beta-N-acetylgluc 51.3 28 0.0006 43.4 6.1 84 1773-1864 132-219 (553)
129 cd02931 ER_like_FMN Enoate red 51.1 68 0.0015 41.9 10.2 70 104-176 147-227 (382)
130 PRK03705 glycogen debranching 51.0 29 0.00064 48.2 7.2 66 1401-1466 242-338 (658)
131 PF14488 DUF4434: Domain of un 50.3 1.7E+02 0.0036 33.6 12.0 118 1372-1507 33-160 (166)
132 cd02932 OYE_YqiM_FMN Old yello 50.3 64 0.0014 41.3 9.8 94 105-202 152-263 (336)
133 PLN02877 alpha-amylase/limit d 49.9 65 0.0014 46.3 10.2 66 1768-1833 466-561 (970)
134 PRK09441 cytoplasmic alpha-amy 49.8 70 0.0015 43.2 10.4 29 1438-1466 207-235 (479)
135 cd06593 GH31_xylosidase_YicI Y 49.7 82 0.0018 39.8 10.5 103 2277-2384 125-257 (308)
136 PRK03705 glycogen debranching 49.6 42 0.00092 46.7 8.4 66 1768-1833 242-338 (658)
137 PLN02495 oxidoreductase, actin 49.5 65 0.0014 41.8 9.5 115 72-200 100-214 (385)
138 COG4724 Endo-beta-N-acetylgluc 49.4 27 0.00059 43.5 5.7 85 1405-1497 131-219 (553)
139 PLN02877 alpha-amylase/limit d 49.4 41 0.00088 48.2 8.2 66 1401-1466 466-561 (970)
140 PRK14705 glycogen branching en 48.9 1E+02 0.0022 45.7 12.2 65 1768-1832 815-905 (1224)
141 COG1902 NemA NADH:flavin oxido 48.7 99 0.0021 40.0 10.9 139 1396-1539 77-263 (363)
142 cd02940 DHPD_FMN Dihydropyrimi 48.6 63 0.0014 40.7 9.1 112 74-200 88-200 (299)
143 PRK14581 hmsF outer membrane N 48.4 83 0.0018 43.7 10.7 166 1738-1906 346-575 (672)
144 cd04740 DHOD_1B_like Dihydroor 47.0 1.3E+02 0.0028 37.8 11.6 87 1769-1878 76-164 (296)
145 cd06599 GH31_glycosidase_Aec37 46.6 64 0.0014 41.0 8.8 101 2278-2384 134-271 (317)
146 cd04740 DHOD_1B_like Dihydroor 46.1 92 0.002 39.1 10.1 88 1401-1510 75-163 (296)
147 PF14587 Glyco_hydr_30_2: O-Gl 45.6 32 0.00069 44.1 5.7 114 1395-1509 99-225 (384)
148 cd02803 OYE_like_FMN_family Ol 45.6 1.1E+02 0.0023 39.1 10.7 96 105-204 139-252 (327)
149 cd04735 OYE_like_4_FMN Old yel 45.1 62 0.0013 41.8 8.5 136 1768-1905 78-259 (353)
150 TIGR02456 treS_nterm trehalose 44.7 96 0.0021 42.5 10.6 123 1400-1538 75-265 (539)
151 cd02932 OYE_YqiM_FMN Old yello 44.4 1.7E+02 0.0036 37.6 12.1 93 1807-1902 151-262 (336)
152 cd06415 GH25_Cpl1-like Cpl-1 l 44.3 47 0.001 39.0 6.7 82 1398-1495 35-119 (196)
153 cd04747 OYE_like_5_FMN Old yel 44.1 83 0.0018 40.7 9.3 108 1768-1877 78-220 (361)
154 PRK10605 N-ethylmaleimide redu 43.4 1.2E+02 0.0025 39.4 10.5 94 105-202 157-271 (362)
155 PF00128 Alpha-amylase: Alpha 43.4 70 0.0015 39.8 8.6 29 1437-1466 142-170 (316)
156 PF05283 MGC-24: Multi-glycosy 42.8 92 0.002 36.1 8.3 11 1213-1223 52-62 (186)
157 cd06592 GH31_glucosidase_KIAA1 42.7 1.4E+02 0.0031 37.7 11.0 67 1403-1469 72-167 (303)
158 cd06416 GH25_Lys1-like Lys-1 i 42.1 46 0.001 39.1 6.1 90 1399-1508 37-130 (196)
159 PRK10550 tRNA-dihydrouridine s 41.8 51 0.0011 41.7 6.8 105 86-201 63-169 (312)
160 PRK07259 dihydroorotate dehydr 41.3 1.6E+02 0.0035 37.0 11.2 87 1770-1878 79-167 (301)
161 cd02801 DUS_like_FMN Dihydrour 41.3 72 0.0016 38.3 7.8 110 1406-1535 46-159 (231)
162 cd02931 ER_like_FMN Enoate red 41.0 65 0.0014 42.1 7.8 108 1768-1877 83-227 (382)
163 PRK08255 salicylyl-CoA 5-hydro 40.7 1.1E+02 0.0024 43.8 10.7 93 105-201 549-659 (765)
164 PRK07259 dihydroorotate dehydr 40.5 1.1E+02 0.0024 38.5 9.6 87 1402-1510 78-166 (301)
165 cd06602 GH31_MGAM_SI_GAA This 40.4 79 0.0017 40.6 8.3 105 2275-2384 128-252 (339)
166 TIGR00742 yjbN tRNA dihydrouri 39.8 93 0.002 39.5 8.6 85 80-177 49-133 (318)
167 PF02684 LpxB: Lipid-A-disacch 39.6 47 0.001 43.0 6.0 110 66-199 8-139 (373)
168 PLN02361 alpha-amylase 39.4 1.1E+02 0.0024 40.0 9.4 66 1401-1466 76-181 (401)
169 cd06592 GH31_glucosidase_KIAA1 39.3 2.2E+02 0.0048 35.9 12.0 33 1803-1835 134-166 (303)
170 cd02933 OYE_like_FMN Old yello 39.2 77 0.0017 40.6 7.9 69 1807-1878 149-228 (338)
171 PLN02411 12-oxophytodienoate r 38.8 83 0.0018 41.2 8.2 68 106-177 164-241 (391)
172 KOG1924|consensus 38.3 79 0.0017 43.0 7.6 22 484-505 166-187 (1102)
173 cd02930 DCR_FMN 2,4-dienoyl-Co 38.2 1E+02 0.0023 39.7 9.0 132 1401-1535 77-245 (353)
174 PF02065 Melibiase: Melibiase; 38.0 87 0.0019 40.9 8.1 75 100-176 162-236 (394)
175 PRK11815 tRNA-dihydrouridine s 37.7 57 0.0012 41.7 6.4 76 85-173 64-139 (333)
176 cd06522 GH25_AtlA-like AtlA is 37.1 90 0.0019 36.6 7.5 80 1398-1496 39-121 (192)
177 COG3867 Arabinogalactan endo-1 36.5 6.6E+02 0.014 31.2 14.0 62 1769-1833 105-175 (403)
178 cd04738 DHOD_2_like Dihydrooro 36.2 1.7E+02 0.0038 37.3 10.4 119 1401-1535 115-237 (327)
179 PF07364 DUF1485: Protein of u 36.1 1.2E+02 0.0026 38.0 8.6 108 1405-1533 49-157 (292)
180 PRK10605 N-ethylmaleimide redu 36.0 4E+02 0.0087 34.6 13.7 94 1807-1903 156-271 (362)
181 cd06591 GH31_xylosidase_XylS X 35.8 1.2E+02 0.0026 38.6 8.8 66 1770-1836 68-161 (319)
182 cd06600 GH31_MGAM-like This fa 35.3 1.3E+02 0.0028 38.3 9.0 104 2277-2384 125-248 (317)
183 PRK10550 tRNA-dihydrouridine s 34.7 1.2E+02 0.0025 38.6 8.3 102 1414-1533 62-167 (312)
184 cd02911 arch_FMN Archeal FMN-b 34.7 2E+02 0.0043 34.9 10.0 86 1404-1511 62-149 (233)
185 cd02803 OYE_like_FMN_family Ol 33.9 98 0.0021 39.4 7.7 95 1807-1904 138-251 (327)
186 PRK05286 dihydroorotate dehydr 33.3 1.3E+02 0.0028 38.8 8.6 118 1401-1535 125-246 (344)
187 COG3867 Arabinogalactan endo-1 33.0 1.8E+02 0.0038 35.7 8.7 60 1404-1467 107-176 (403)
188 TIGR00737 nifR3_yhdG putative 33.0 1.3E+02 0.0029 38.1 8.7 104 83-201 60-168 (319)
189 TIGR02403 trehalose_treC alpha 32.8 1.7E+02 0.0037 40.1 10.2 61 1438-1499 168-235 (543)
190 cd06412 GH25_CH-type CH-type ( 32.7 84 0.0018 37.0 6.3 21 1397-1417 35-55 (199)
191 PF05990 DUF900: Alpha/beta hy 31.7 2E+02 0.0043 34.9 9.4 72 1412-1497 15-90 (233)
192 PF14587 Glyco_hydr_30_2: O-Gl 31.3 91 0.002 40.1 6.5 73 103-175 150-225 (384)
193 COG2342 Predicted extracellula 31.1 1.3E+02 0.0028 36.8 7.3 107 1404-1511 63-194 (300)
194 cd06591 GH31_xylosidase_XylS X 30.7 1.1E+02 0.0025 38.8 7.5 67 1403-1469 68-161 (319)
195 PRK13335 superantigen-like pro 30.6 57 0.0012 40.4 4.3 7 1341-1347 170-176 (356)
196 PRK01021 lpxB lipid-A-disaccha 30.6 86 0.0019 42.8 6.5 115 65-204 235-371 (608)
197 PF00763 THF_DHG_CYH: Tetrahyd 30.5 2.5E+02 0.0053 30.2 8.8 89 1399-1511 12-100 (117)
198 PF02055 Glyco_hydro_30: O-Gly 30.1 1.1E+02 0.0024 41.3 7.4 122 78-202 161-311 (496)
199 PF08869 XisI: XisI protein; 29.9 31 0.00066 36.5 1.8 25 1569-1593 80-105 (111)
200 TIGR00737 nifR3_yhdG putative 29.7 2E+02 0.0044 36.5 9.5 105 1409-1533 57-166 (319)
201 PF04914 DltD_C: DltD C-termin 29.6 91 0.002 34.2 5.4 59 1402-1463 37-95 (130)
202 PRK10785 maltodextrin glucosid 29.6 1.6E+02 0.0034 41.0 9.0 90 1767-1866 225-362 (598)
203 cd04741 DHOD_1A_like Dihydroor 29.4 1.7E+02 0.0038 36.7 8.6 88 73-178 77-168 (294)
204 PF02065 Melibiase: Melibiase; 29.3 1.4E+02 0.003 39.1 7.9 63 478-542 162-228 (394)
205 PF10566 Glyco_hydro_97: Glyco 29.3 1.3E+02 0.0028 37.3 7.1 82 1769-1873 74-155 (273)
206 PRK08318 dihydropyrimidine deh 29.1 1.8E+02 0.004 38.4 9.3 91 75-178 89-179 (420)
207 cd06523 GH25_PlyB-like PlyB is 28.9 1.2E+02 0.0026 35.1 6.6 80 1396-1496 34-113 (177)
208 PF14885 GHL15: Hypothetical g 28.4 65 0.0014 32.1 3.6 43 1789-1832 32-75 (79)
209 TIGR01037 pyrD_sub1_fam dihydr 28.3 3E+02 0.0064 34.7 10.6 109 1401-1534 76-189 (300)
210 cd04741 DHOD_1A_like Dihydroor 28.2 2.9E+02 0.0062 34.8 10.3 87 1401-1511 74-167 (294)
211 cd04738 DHOD_2_like Dihydrooro 28.1 3E+02 0.0065 35.2 10.6 94 1770-1878 117-212 (327)
212 cd02940 DHPD_FMN Dihydropyrimi 27.8 3.5E+02 0.0075 34.1 11.0 109 1403-1533 86-199 (299)
213 PRK05286 dihydroorotate dehydr 27.8 2.5E+02 0.0054 36.2 9.9 117 1769-1902 126-246 (344)
214 COG1523 PulA Type II secretory 27.6 1.3E+02 0.0029 41.9 7.6 66 1768-1833 265-361 (697)
215 PRK08318 dihydropyrimidine deh 27.2 3.8E+02 0.0082 35.5 11.7 79 1414-1511 99-178 (420)
216 COG2342 Predicted extracellula 27.1 1.4E+02 0.0031 36.4 6.8 111 1771-1882 63-198 (300)
217 PLN02361 alpha-amylase 26.9 1.9E+02 0.004 38.1 8.5 66 1767-1833 75-181 (401)
218 PF14885 GHL15: Hypothetical g 26.7 57 0.0012 32.5 2.9 43 1422-1465 32-75 (79)
219 PF14488 DUF4434: Domain of un 26.6 5.1E+02 0.011 29.8 10.9 60 1770-1835 67-131 (166)
220 COG0296 GlgB 1,4-alpha-glucan 25.7 1.3E+02 0.0029 41.3 7.0 64 1401-1464 214-303 (628)
221 COG1902 NemA NADH:flavin oxido 25.5 1.8E+02 0.0039 37.7 7.8 99 104-205 146-263 (363)
222 smart00812 Alpha_L_fucos Alpha 25.5 9.1E+02 0.02 31.7 14.3 64 1403-1469 130-205 (384)
223 smart00812 Alpha_L_fucos Alpha 25.5 1.3E+03 0.028 30.3 15.6 66 1770-1836 130-205 (384)
224 PF01994 Trm56: tRNA ribose 2' 25.2 70 0.0015 34.0 3.3 55 2251-2317 39-106 (120)
225 TIGR02403 trehalose_treC alpha 25.1 4.5E+02 0.0098 36.1 12.1 70 1805-1875 168-245 (543)
226 PRK11815 tRNA-dihydrouridine s 24.9 1.5E+02 0.0032 38.0 7.0 73 1408-1497 58-132 (333)
227 cd06598 GH31_transferase_CtsZ 24.8 2.2E+02 0.0047 36.3 8.4 105 2275-2384 128-264 (317)
228 cd06414 GH25_LytC-like The Lyt 24.8 2.4E+02 0.0052 33.0 8.2 61 1398-1469 39-100 (191)
229 cd06599 GH31_glycosidase_Aec37 24.6 1.7E+02 0.0037 37.2 7.5 65 1770-1835 75-169 (317)
230 cd06522 GH25_AtlA-like AtlA is 24.5 4.2E+02 0.0092 31.0 10.2 112 1767-1904 41-155 (192)
231 TIGR00742 yjbN tRNA dihydrouri 24.5 1.3E+02 0.0028 38.2 6.3 81 1410-1510 50-132 (318)
232 PF02057 Glyco_hydro_59: Glyco 23.7 1E+02 0.0022 42.3 5.3 117 67-200 108-237 (669)
233 PRK02506 dihydroorotate dehydr 23.6 3E+02 0.0064 35.0 9.3 88 1401-1511 77-167 (310)
234 PF00724 Oxidored_FMN: NADH:fl 23.5 8.7E+02 0.019 31.2 13.6 133 1743-1878 53-226 (341)
235 smart00733 Mterf Mitochondrial 23.2 57 0.0012 25.1 1.8 24 2345-2369 7-30 (31)
236 cd06415 GH25_Cpl1-like Cpl-1 l 23.0 2.5E+02 0.0054 33.0 7.9 79 1768-1862 38-119 (196)
237 cd06594 GH31_glucosidase_YihQ 22.6 1.5E+02 0.0033 37.7 6.4 63 1403-1465 73-164 (317)
238 KOG1552|consensus 22.4 1.2E+02 0.0026 36.9 5.1 51 572-634 88-138 (258)
239 TIGR00736 nifR3_rel_arch TIM-b 22.3 5.9E+02 0.013 30.9 10.9 106 1404-1533 58-167 (231)
240 cd06589 GH31 The enzymes of gl 22.2 1.2E+02 0.0026 37.5 5.3 51 1403-1469 68-118 (265)
241 PRK03995 hypothetical protein; 22.2 1.9E+02 0.004 35.8 6.7 97 1746-1860 145-260 (267)
242 PF00150 Cellulase: Cellulase 22.1 2.3E+02 0.005 34.7 7.9 95 1401-1501 62-163 (281)
243 cd06419 GH25_muramidase_2 Unch 21.9 1.2E+02 0.0026 35.6 4.9 84 1398-1498 43-127 (190)
244 PF01055 Glyco_hydro_31: Glyco 21.9 1.2E+02 0.0026 40.4 5.6 107 2276-2385 144-287 (441)
245 COG1856 Uncharacterized homolo 21.5 3.9E+02 0.0085 31.8 8.5 92 1401-1509 136-229 (275)
246 TIGR03234 OH-pyruv-isom hydrox 21.0 97 0.0021 37.8 4.2 43 1813-1874 16-58 (254)
247 PRK02506 dihydroorotate dehydr 20.9 2.5E+02 0.0055 35.5 7.9 88 73-178 80-168 (310)
248 PRK07565 dihydroorotate dehydr 20.8 3.3E+02 0.0072 34.9 9.0 77 1401-1497 87-164 (334)
249 PLN02411 12-oxophytodienoate r 20.8 2.1E+02 0.0045 37.5 7.3 67 1808-1877 163-240 (391)
250 cd06595 GH31_xylosidase_XylS-l 20.8 1.8E+02 0.004 36.4 6.6 63 1403-1465 76-157 (292)
251 PRK07565 dihydroorotate dehydr 20.8 3.6E+02 0.0078 34.6 9.3 86 1769-1877 88-174 (334)
252 PF07582 AP_endonuc_2_N: AP en 20.7 1.6E+02 0.0034 27.4 4.2 41 1447-1497 3-44 (55)
253 PF02057 Glyco_hydro_59: Glyco 20.6 61 0.0013 44.3 2.4 84 443-544 115-202 (669)
254 cd06597 GH31_transferase_CtsY 20.6 1.5E+02 0.0032 38.2 5.8 105 2275-2384 150-284 (340)
255 cd06417 GH25_LysA-like LysA is 20.5 2.4E+02 0.0052 33.1 7.1 79 1398-1497 33-112 (195)
256 PRK14193 bifunctional 5,10-met 20.5 3.7E+02 0.0079 33.7 8.8 89 1399-1511 15-103 (284)
257 COG1523 PulA Type II secretory 20.4 1.7E+02 0.0036 41.0 6.5 66 1401-1466 265-361 (697)
258 PF02449 Glyco_hydro_42: Beta- 20.2 2.8E+02 0.0061 36.1 8.4 88 1403-1498 49-161 (374)
259 PF04914 DltD_C: DltD C-termin 20.0 3.3E+02 0.0072 29.9 7.4 57 1770-1830 38-95 (130)
No 1
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=1.2e-65 Score=653.95 Aligned_cols=364 Identities=32% Similarity=0.661 Sum_probs=315.6
Q ss_pred EEEEEEecCcccccCCCCCCCCCCCCCC--ccEEEEEeEEecCCCcEEccCCCcchhhHHHHHHHHHHHhC--CCEEEEE
Q psy4449 1712 KIVCYFTNWAWYRQSGGKYLPSDIDSDL--CTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLA 1787 (2417)
Q Consensus 1712 ~vvcY~~~W~~yr~~~~~~~~~~i~~~~--cTHIiyaFa~i~~~~~~~~~~d~~~d~~~~~~~~i~~lk~~--glKvlls 1787 (2417)
+|||||.+|++||.+.++|.|++||+.+ ||||+|||+.|++++..+...+.+.+.+...++++..||++ ++|||||
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~lKvllS 80 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKSHYRAITSLKRKYPHLKVLLS 80 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEecCcccchhhhHHHHHHHHHhhCCCCeEEEe
Confidence 5899999999999999999999999976 99999999999998877777777777776778899999886 7999999
Q ss_pred EcCCCCCC----CcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCC---------------------
Q psy4449 1788 IGGWNDSA----GNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDC--------------------- 1842 (2417)
Q Consensus 1788 IGGw~~s~----~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~--------------------- 1842 (2417)
||||..+. +..|+.|++++++|++||+++++||++|+|||||||||||+..+...
T Consensus 81 iGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~g~~~~ 160 (413)
T cd02873 81 VGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSVV 160 (413)
T ss_pred ecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhccccccccc
Confidence 99998642 35799999999999999999999999999999999999997421100
Q ss_pred CCCCcchhhhHHHHHHHHHHhcCCCCcEEEEEECCChhhhcccCCccccccCcceEEEEeccCCCCCCC--CCCCCCcCC
Q psy4449 1843 KQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDK--KTGHVAPMY 1920 (2417)
Q Consensus 1843 ~~~~~~d~~~~~~llkeLr~~l~~~~~~Ls~av~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~--~tg~~aPLy 1920 (2417)
....++|+++|+.||+|||++|++.+++|++++++.... ...||+++|+++|||||||+|||||+|.. .++|+||||
T Consensus 161 ~~~~~~d~~nf~~Ll~elr~~l~~~~~~ls~av~~~~~~-~~~~d~~~l~~~vD~inlMtYD~~g~~~~~~~~~~~apL~ 239 (413)
T cd02873 161 DEKAAEHKEQFTALVRELKNALRPDGLLLTLTVLPHVNS-TWYFDVPAIANNVDFVNLATFDFLTPERNPEEADYTAPIY 239 (413)
T ss_pred CCCChhHHHHHHHHHHHHHHHhcccCcEEEEEecCCchh-ccccCHHHHhhcCCEEEEEEecccCCCCCCCccCcCCccC
Confidence 112468999999999999999999999999998764332 23589999999999999999999999865 589999999
Q ss_pred CCCCCCCCCccHHHHHHHHHHcCCCCCcEeeeccccceeeEeccCCC-CCC--CCccccCCCCCCccccCccchHHHHHH
Q psy4449 1921 ALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNK-NGL--NSQTYGGAEAGENTRARGFLAYYEICD 1997 (2417)
Q Consensus 1921 ~~~~~~~~~~nv~~~v~~~~~~G~p~~KLvlGiP~YG~~ftl~~~~~-~~~--~a~~~g~g~~g~~t~~~G~l~y~eic~ 1997 (2417)
..... ...+|++.+|++|+++|+|++|||||||||||.|++.+... .+. .+++.|++.+|+++.+.|.++|+|||+
T Consensus 240 ~~~~~-~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~g~~~~G~~~~~~g~l~y~ei~~ 318 (413)
T cd02873 240 ELYER-NPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETDGPGPAGPQTKTPGLLSWPEICS 318 (413)
T ss_pred CCccc-cccccHHHHHHHHHHcCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCCCCCCCCCCcCCCccccHHHHHH
Confidence 76432 35689999999999999999999999999999999986542 232 246788899999999999999999999
Q ss_pred hhhcC--------CcEEEEcCCCceeeEEee-------CCEEEEeCCHHHHHHHHHHhhcCCcceEEEEeccCccccCcC
Q psy4449 1998 KIQKD--------GWVVVRDRKRRIGPYAFK-------GDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKNFC 2062 (2417)
Q Consensus 1998 ~~~~~--------~~~~~~D~~~~~~py~~~-------~~~wv~Ydd~~Si~~K~~~~k~~gLgGvmiW~ld~DDf~g~C 2062 (2417)
.+... .|..+||+..+..+|+|+ .++||+|||++||+.|++||+++||||+|+|+|++|||+|.|
T Consensus 319 ~~~~~~~~~g~~~~~~~~~d~~~~~~~y~y~~~d~~~~~~~wvsydd~~Si~~K~~y~~~~gLgGv~~W~l~~DD~~g~c 398 (413)
T cd02873 319 KLPNPANLKGADAPLRKVGDPTKRFGSYAYRPADENGEHGIWVSYEDPDTAANKAGYAKAKGLGGVALFDLSLDDFRGQC 398 (413)
T ss_pred hhccCccccccccceeEeecccccccceEEeccccCCCCCeEEEeCCHHHHHHHHHHHHhCCCceEEEEeeecCcCCCCc
Confidence 87653 366789987665699984 257999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHh
Q psy4449 2063 GCESYPLLKTINRVL 2077 (2417)
Q Consensus 2063 g~~~~pLl~ai~~~l 2077 (2417)
+.+.||||++|+..|
T Consensus 399 ~~~~~pll~~i~~~~ 413 (413)
T cd02873 399 TGDKFPILRSAKYRL 413 (413)
T ss_pred CCCCChHHHHHHhhC
Confidence 888999999999865
No 2
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=9e-65 Score=643.99 Aligned_cols=356 Identities=51% Similarity=0.988 Sum_probs=328.0
Q ss_pred EEEEEecCcccccCCCCCCCCCCCCCCccEEEEEeEEecCCCcEEccCCCcchhhHHHHHHHHHHHhC--CCEEEEEEcC
Q psy4449 1713 IVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGG 1790 (2417)
Q Consensus 1713 vvcY~~~W~~yr~~~~~~~~~~i~~~~cTHIiyaFa~i~~~~~~~~~~d~~~d~~~~~~~~i~~lk~~--glKvllsIGG 1790 (2417)
|||||++|+.||++.++|.+++|+.++||||+|+|+.++.++.+ ...++|.|.+..+++++..||++ ++||||||||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g~~-~~~~~~~d~~~~~~~~~~~lk~~~p~lkvlisiGG 79 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDGNI-IILDEWNDIDLGLYERFNALKEKNPNLKTLLAIGG 79 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCCCE-EecCchhhhhhhHHHHHHHHHhhCCCceEEEEEcC
Confidence 68999999999999999999999999999999999999988644 34567777777888999999986 7999999999
Q ss_pred CCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcchhhhHHHHHHHHHHhcCCC--C
Q psy4449 1791 WNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPH--D 1868 (2417)
Q Consensus 1791 w~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~~~~~llkeLr~~l~~~--~ 1868 (2417)
|+.+ +..|+.|+++++.|++||++|+++|++|+|||||||||||.. .++.++|+++|+.||++||++|++. +
T Consensus 80 ~~~~-~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~-----~~~~~~d~~~~~~ll~~lr~~l~~~~~~ 153 (362)
T cd02872 80 WNFG-SAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQ-----RGGPPEDKENFVTLLKELREAFEPEAPR 153 (362)
T ss_pred CCCC-cchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeecccc-----CCCCHHHHHHHHHHHHHHHHHHHhhCcC
Confidence 9875 358999999999999999999999999999999999999973 2345689999999999999999988 8
Q ss_pred cEEEEEECCChhhhcccCCccccccCcceEEEEeccCCCCCCCCCCCCCcCCCCCCCC--CCCccHHHHHHHHHHcCCCC
Q psy4449 1869 LLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDT--TPTFNANYSLHYWVSHGADR 1946 (2417)
Q Consensus 1869 ~~Ls~av~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~aPLy~~~~~~--~~~~nv~~~v~~~~~~G~p~ 1946 (2417)
++|++++++....+..+||+++|.+++|+|+||+||+||.|+..+||+|||++.+.+. ...++++.+|++|++.|+|+
T Consensus 154 ~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~~~~~g~~spl~~~~~~~~~~~~~~v~~~v~~~~~~gvp~ 233 (362)
T cd02872 154 LLLTAAVSAGKETIDAAYDIPEISKYLDFINVMTYDFHGSWEGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSKGAPP 233 (362)
T ss_pred eEEEEEecCChHHHhhcCCHHHHhhhcceEEEecccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCH
Confidence 9999999987766667899999999999999999999999999999999999876543 34679999999999999999
Q ss_pred CcEeeeccccceeeEeccCCCCCCCCccccCCCCCCccccCccchHHHHHHhhhcCCcEEEEcCCCceeeEEeeCCEEEE
Q psy4449 1947 KKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKGDQWVG 2026 (2417)
Q Consensus 1947 ~KLvlGiP~YG~~ftl~~~~~~~~~a~~~g~g~~g~~t~~~G~l~y~eic~~~~~~~~~~~~D~~~~~~py~~~~~~wv~ 2026 (2417)
+||+||||||||.|++.+..++++|++..|++.+|.++...|.++|.|||+.+ ..+|+..||+..+ .||+|++++||+
T Consensus 234 ~KlvlGlp~YG~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~-~~~~~~~~D~~~~-~~y~~~~~~~v~ 311 (362)
T cd02872 234 EKLVLGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFL-KSGWTVVWDDEQK-VPYAYKGNQWVG 311 (362)
T ss_pred HHeEeccccccceeeecCCccCCCCCccCCCCCCCCCcCCCccchHHHHHHhh-cCCcEEEEeCCcc-eeEEEECCEEEE
Confidence 99999999999999999888889999999999999999999999999999988 7899999999875 799999999999
Q ss_pred eCCHHHHHHHHHHhhcCCcceEEEEeccCccccCcCCCCCchHHHHHHHHh
Q psy4449 2027 FDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKNFCGCESYPLLKTINRVL 2077 (2417)
Q Consensus 2027 Ydd~~Si~~K~~~~k~~gLgGvmiW~ld~DDf~g~Cg~~~~pLl~ai~~~l 2077 (2417)
|||++||+.|++|++++||||+|+|+|++|||+|.||.++||||++|+++|
T Consensus 312 ydd~~Si~~K~~~~~~~~lgGv~iW~l~~DD~~g~cg~~~~pLl~~i~~~~ 362 (362)
T cd02872 312 YDDEESIALKVQYLKSKGLGGAMVWSIDLDDFRGTCGQGKYPLLNAINRAL 362 (362)
T ss_pred eCCHHHHHHHHHHHHhCCCceEEEEeeecCcCCCccCCCCCcHHHHHHHhC
Confidence 999999999999999999999999999999999999988999999999875
No 3
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=1e-64 Score=645.36 Aligned_cols=373 Identities=28% Similarity=0.551 Sum_probs=317.0
Q ss_pred eEEEEEeeccCCCCCCCCCCccccCCCC--ccEEEEEeEEecCCcceEecCCCCcccchhHHHHhhcCCcccCCCcEEEE
Q psy4449 384 KVVCYVTNWSGSRKSDGKFVPENIDYKL--CTHIVYAFASLDPNTLSIQAGNPEADIDDNFYQRISSSPLVTHGKVKILI 461 (2417)
Q Consensus 384 ~vvcY~~~W~~~~~g~~~~~~~~i~~~~--~THIiyaFa~~~~~~~~~~~~d~~~d~~~~~~~~~~~lk~~~~p~lKvll 461 (2417)
||||||++|+.+|.+.++|.|++||..+ ||||||+|+.|++++..+...+.+.+++...++++..|| .++|++||||
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lk-~~~p~lKvll 79 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKSHYRAITSLK-RKYPHLKVLL 79 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEecCcccchhhhHHHHHHHHH-hhCCCCeEEE
Confidence 6899999999999999999999999876 999999999999988888887877777777788899898 7899999999
Q ss_pred EecCCCCCC----CcchhhhccCHHHHHHHHHHHHHHhhhCCcceEEEEecCCCccCCc---------------------
Q psy4449 462 AIGGWTDSS----GEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQAD--------------------- 516 (2417)
Q Consensus 462 SiGGw~~s~----g~~fs~~~s~~~~R~~fi~svv~~l~~ygfDGiDiDwEyP~~~~~~--------------------- 516 (2417)
|||||+.+. ...|+.+++++++|++||+++++||++|+|||||||||||+..+..
T Consensus 80 SiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~g~~~ 159 (413)
T cd02873 80 SVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSV 159 (413)
T ss_pred eecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhcccccccc
Confidence 999998652 2479999999999999999999999999999999999999743211
Q ss_pred CCCCCcchhhhHHHHHHHHHHHhccCCcceEeeccchhhhhhhcCCccccccccceEEEEeeccCCCCCC--CcCCCCCC
Q psy4449 517 CSKQHKADKGNFVKLIQELKAEFDKHDYSIAVGISGYKEILEVAYDFPALNDHVEFMSLMSYDYHGAWEG--ITGLVSPL 594 (2417)
Q Consensus 517 ~~~~~~~d~~nf~~ll~eLR~~f~~~~~~Lsvav~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~--~tg~~sPL 594 (2417)
.....++|++||+.||+|||++|++.+++|++++++... ....||+++|+++|||||||+|||||+|.. .++|+|||
T Consensus 160 ~~~~~~~d~~nf~~Ll~elr~~l~~~~~~ls~av~~~~~-~~~~~d~~~l~~~vD~inlMtYD~~g~~~~~~~~~~~apL 238 (413)
T cd02873 160 VDEKAAEHKEQFTALVRELKNALRPDGLLLTLTVLPHVN-STWYFDVPAIANNVDFVNLATFDFLTPERNPEEADYTAPI 238 (413)
T ss_pred cCCCChhHHHHHHHHHHHHHHHhcccCcEEEEEecCCch-hccccCHHHHhhcCCEEEEEEecccCCCCCCCccCcCCcc
Confidence 112356899999999999999999988999998764322 124589999999999999999999999864 69999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEeecccceeeeeccCCC-CCC--CCcccCCCCCCcccCCccchhHHHHH
Q psy4449 595 NSRPGEPYPNYNINTALKLIDELGGDKRKIVIGVPFYGQSYTLKLDKE-HGL--GAETDGPGLAGEYTQQPGMLAYYEIC 671 (2417)
Q Consensus 595 ~~~~~~~~~~~~v~~~v~~~~~~G~p~~KLvlGvP~YGr~~~l~~~~~-~g~--~~~~~g~g~~g~~t~~~g~~~y~eic 671 (2417)
|.... ..+.+|++.+|++|++.|+|++|||||||||||+|+++.++. .+. .+++.|++.+|.++..+|+++|.|||
T Consensus 239 ~~~~~-~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~g~~~~G~~~~~~g~l~y~ei~ 317 (413)
T cd02873 239 YELYE-RNPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETDGPGPAGPQTKTPGLLSWPEIC 317 (413)
T ss_pred CCCcc-ccccccHHHHHHHHHHcCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCCCCCCCCCCcCCCccccHHHHH
Confidence 97643 245689999999999999999999999999999999987543 332 24678899999999999999999999
Q ss_pred HHHhcCcccccccccCCCcCccCccccccccCCCCCCCCCCCCCccccCCCchhhhhhhhhhccCceeEeeCCCCc-cee
Q psy4449 672 YRIKTRKWTVQRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSL-EPF 750 (2417)
Q Consensus 672 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~w~~~~d~~~~-~pY 750 (2417)
.+++...|. .| ....|...||...+ .||
T Consensus 318 ~~~~~~~~~----------------------------------------~g-----------~~~~~~~~~d~~~~~~~y 346 (413)
T cd02873 318 SKLPNPANL----------------------------------------KG-----------ADAPLRKVGDPTKRFGSY 346 (413)
T ss_pred HhhccCccc----------------------------------------cc-----------cccceeEeecccccccce
Confidence 987544321 00 01134456777665 589
Q ss_pred Eec-------CCEEEEcCCHHHHHHHHHHHHhcCCceEEeecccccccCCccCCCCCcHHHHHHHHh
Q psy4449 751 TFQ-------GDQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLDDFHNKCCMESFPLLRAVNRAF 810 (2417)
Q Consensus 751 ~~~-------~~~~i~Ydd~~Si~~K~~y~~~~gLgGv~iW~ld~DD~~~~c~~~~~~ll~ai~~~l 810 (2417)
+|. .++||+|||++||+.|++||+++||||+|+|++++|||+|.|+++.+|||++|+..|
T Consensus 347 ~y~~~d~~~~~~~wvsydd~~Si~~K~~y~~~~gLgGv~~W~l~~DD~~g~c~~~~~pll~~i~~~~ 413 (413)
T cd02873 347 AYRPADENGEHGIWVSYEDPDTAANKAGYAKAKGLGGVALFDLSLDDFRGQCTGDKFPILRSAKYRL 413 (413)
T ss_pred EEeccccCCCCCeEEEeCCHHHHHHHHHHHHhCCCceEEEEeeecCcCCCCcCCCCChHHHHHHhhC
Confidence 884 258999999999999999999999999999999999999999999999999999764
No 4
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=6.1e-64 Score=636.35 Aligned_cols=358 Identities=44% Similarity=0.847 Sum_probs=327.3
Q ss_pred EEEEEeeccCCCCCCCCCCccccCCCCccEEEEEeEEecCCcceEecCCCCcccchhHHHHhhcCCcccCCCcEEEEEec
Q psy4449 385 VVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFYQRISSSPLVTHGKVKILIAIG 464 (2417)
Q Consensus 385 vvcY~~~W~~~~~g~~~~~~~~i~~~~~THIiyaFa~~~~~~~~~~~~d~~~d~~~~~~~~~~~lk~~~~p~lKvllSiG 464 (2417)
|||||++|+.+|++.+.|.+++|+.++||||||+|+.++.++ .+...+++.|.+..+++++..+| .++|++|||||||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g-~~~~~~~~~d~~~~~~~~~~~lk-~~~p~lkvlisiG 78 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDG-NIIILDEWNDIDLGLYERFNALK-EKNPNLKTLLAIG 78 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCC-CEEecCchhhhhhhHHHHHHHHH-hhCCCceEEEEEc
Confidence 699999999999999999999999999999999999999875 45566777777788888998888 6789999999999
Q ss_pred CCCCCCCcchhhhccCHHHHHHHHHHHHHHhhhCCcceEEEEecCCCccCCcCCCCCcchhhhHHHHHHHHHHHhccC--
Q psy4449 465 GWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKH-- 542 (2417)
Q Consensus 465 Gw~~s~g~~fs~~~s~~~~R~~fi~svv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~nf~~ll~eLR~~f~~~-- 542 (2417)
||+.+. ..|+.++++++.|++||+++++++++|+|||||||||||+..+ +.++|+++|+.||++||++|++.
T Consensus 79 G~~~~~-~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~-----~~~~d~~~~~~ll~~lr~~l~~~~~ 152 (362)
T cd02872 79 GWNFGS-AKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRG-----GPPEDKENFVTLLKELREAFEPEAP 152 (362)
T ss_pred CCCCCc-chhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCC-----CCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 998754 5899999999999999999999999999999999999997432 35689999999999999999988
Q ss_pred CcceEeeccchhhhhhhcCCccccccccceEEEEeeccCCCCCCCcCCCCCCCCCCCCC--CCCCCHHHHHHHHHHhCCC
Q psy4449 543 DYSIAVGISGYKEILEVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEP--YPNYNINTALKLIDELGGD 620 (2417)
Q Consensus 543 ~~~Lsvav~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~sPL~~~~~~~--~~~~~v~~~v~~~~~~G~p 620 (2417)
+++|++++++........||++.|.+++|||+||+||+||+|...+||+|||+..+.++ ...++++.+|++|++.|+|
T Consensus 153 ~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~~~~~g~~spl~~~~~~~~~~~~~~v~~~v~~~~~~gvp 232 (362)
T cd02872 153 RLLLTAAVSAGKETIDAAYDIPEISKYLDFINVMTYDFHGSWEGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSKGAP 232 (362)
T ss_pred CeEEEEEecCChHHHhhcCCHHHHhhhcceEEEecccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCC
Confidence 79999999887666667799999999999999999999999999999999999877654 3568999999999999999
Q ss_pred CCcEEEeecccceeeeeccCCCCCCCCcccCCCCCCcccCCccchhHHHHHHHHhcCcccccccccCCCcCccCcccccc
Q psy4449 621 KRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPRSMGTLKLDK 700 (2417)
Q Consensus 621 ~~KLvlGvP~YGr~~~l~~~~~~g~~~~~~g~g~~g~~t~~~g~~~y~eic~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 700 (2417)
++||+||||||||+|++.+..++++++++.|+|.+|.++..+|.++|.|||+++ +.+|
T Consensus 233 ~~KlvlGlp~YG~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~-~~~~--------------------- 290 (362)
T cd02872 233 PEKLVLGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFL-KSGW--------------------- 290 (362)
T ss_pred HHHeEeccccccceeeecCCccCCCCCccCCCCCCCCCcCCCccchHHHHHHhh-cCCc---------------------
Confidence 999999999999999999888889999999999999999999999999999876 4333
Q ss_pred ccCCCCCCCCCCCCCccccCCCchhhhhhhhhhccCceeEeeCCCCcceeEecCCEEEEcCCHHHHHHHHHHHHhcCCce
Q psy4449 701 EHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQGDQWVSYEDPTSLTEKVKFIKSNGYAG 780 (2417)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~w~~~~d~~~~~pY~~~~~~~i~Ydd~~Si~~K~~y~~~~gLgG 780 (2417)
...||+.+++||+|++++||+|||++||+.|++||+++||||
T Consensus 291 --------------------------------------~~~~D~~~~~~y~~~~~~~v~ydd~~Si~~K~~~~~~~~lgG 332 (362)
T cd02872 291 --------------------------------------TVVWDDEQKVPYAYKGNQWVGYDDEESIALKVQYLKSKGLGG 332 (362)
T ss_pred --------------------------------------EEEEeCCcceeEEEECCEEEEeCCHHHHHHHHHHHHhCCCce
Confidence 478999999999999999999999999999999999999999
Q ss_pred EEeecccccccCCccCCCCCcHHHHHHHHh
Q psy4449 781 IMAWTIDLDDFHNKCCMESFPLLRAVNRAF 810 (2417)
Q Consensus 781 v~iW~ld~DD~~~~c~~~~~~ll~ai~~~l 810 (2417)
+|+|+|++||++|.|+.+.+|||++|+++|
T Consensus 333 v~iW~l~~DD~~g~cg~~~~pLl~~i~~~~ 362 (362)
T cd02872 333 AMVWSIDLDDFRGTCGQGKYPLLNAINRAL 362 (362)
T ss_pred EEEEeeecCcCCCccCCCCCcHHHHHHHhC
Confidence 999999999999999988999999999875
No 5
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-61 Score=573.48 Aligned_cols=371 Identities=27% Similarity=0.479 Sum_probs=300.7
Q ss_pred CCCCCCCCeEEEEEeeccCCCCCCCCCCccccCCCCccEEEEEeEEecCCcc------------------eEecCCCCcc
Q psy4449 376 LQPEEPEPKVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTL------------------SIQAGNPEAD 437 (2417)
Q Consensus 376 l~~~~~~~~vvcY~~~W~~~~~g~~~~~~~~i~~~~~THIiyaFa~~~~~~~------------------~~~~~d~~~d 437 (2417)
-......+|||+||++|+++.+ +.|.|.+||++++|||+|+|+.|..++. ...+.|+|.+
T Consensus 31 ~~~~d~~~rvvgYY~sWs~~d~--~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~ 108 (441)
T COG3325 31 AHTSDDQFKVVGYYTSWSQYDR--QDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSD 108 (441)
T ss_pred ccCCCCCceEEEEecccccCCC--cccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccc
Confidence 3566788999999999999876 6899999999999999999999988762 2234677776
Q ss_pred cchhHHHHhhcCCcccCCCcEEEEEecCCCCCCCcchhhhccCHHHHHHHHHHHHHHhhhCCcceEEEEecCCCccCCcC
Q psy4449 438 IDDNFYQRISSSPLVTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQADC 517 (2417)
Q Consensus 438 ~~~~~~~~~~~lk~~~~p~lKvllSiGGw~~s~g~~fs~~~s~~~~R~~fi~svv~~l~~ygfDGiDiDwEyP~~~~~~~ 517 (2417)
.-...+..+..+| .++|++|++||||||+.|. .|+.|+.+.+.|++|++++++||++|+|||||||||||++.+..+
T Consensus 109 ~~~G~~~~L~~lk-~~~~d~k~l~SIGGWs~S~--~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~ 185 (441)
T COG3325 109 PLKGHFGALFDLK-ATYPDLKTLISIGGWSDSG--GFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAG 185 (441)
T ss_pred cccchHHHHHHHh-hhCCCceEEEeecccccCC--CcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCC
Confidence 4455677777787 7899999999999999985 599999999999999999999999999999999999999999889
Q ss_pred CCCCcchhhhHHHHHHHHHHHhccCC------cceEeeccchhhhhhhcCCccccccccceEEEEeeccCCCCCCCcCCC
Q psy4449 518 SKQHKADKGNFVKLIQELKAEFDKHD------YSIAVGISGYKEILEVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLV 591 (2417)
Q Consensus 518 ~~~~~~d~~nf~~ll~eLR~~f~~~~------~~Lsvav~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~ 591 (2417)
+.+.+.|++||+.||+|||++|+..+ |.||+|.++.+..+. +.+..++.++|||||||||||||+|.+.+|||
T Consensus 186 ~~~~~~d~~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA~~as~~~l~-~~~~~~~~~~vDyiNiMTYDf~G~Wn~~~Gh~ 264 (441)
T COG3325 186 NCGRPKDKANYVLLLQELRKKLDKAGVEDGRHYQLTIAAPASKDKLE-GLNHAEIAQYVDYINIMTYDFHGAWNETLGHH 264 (441)
T ss_pred CCCCcccHHHHHHHHHHHHHHHhhcccccCceEEEEEecCCchhhhh-cccHHHHHHHHhhhheeeeecccccccccccc
Confidence 98899999999999999999998764 999999999887766 88999999999999999999999999999999
Q ss_pred CCCCCCCCCCCC---------CCCHHHHHHHHHHhCCCCCcEEEeecccceeeeeccCCCCC-CCCcccCCCCCCcccCC
Q psy4449 592 SPLNSRPGEPYP---------NYNINTALKLIDELGGDKRKIVIGVPFYGQSYTLKLDKEHG-LGAETDGPGLAGEYTQQ 661 (2417)
Q Consensus 592 sPL~~~~~~~~~---------~~~v~~~v~~~~~~G~p~~KLvlGvP~YGr~~~l~~~~~~g-~~~~~~g~g~~g~~t~~ 661 (2417)
+|||..+.|+.. .+....+++.....++||+|||||+|||||+|..+.....+ .+....+....|.
T Consensus 265 a~Ly~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~~~~~~~~~~~~q~~~n~g~---- 340 (441)
T COG3325 265 AALYGTPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGI---- 340 (441)
T ss_pred cccccCCCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccccccccccCcccCCCCCcccccCCCCC----
Confidence 999988777642 22333577777888999999999999999999977654432 0111110000000
Q ss_pred ccchhHHHHHHHHhcCcccccccccCCCcCccCccccccccCCCCCCCCCCCCCccccCCCchhhhhhhh-hhccCceeE
Q psy4449 662 PGMLAYYEICYRIKTRKWTVQRNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICY-RIKTRKWTV 740 (2417)
Q Consensus 662 ~g~~~y~eic~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~-~~~~~~w~~ 740 (2417)
..+.|. . ++. ...+..+|++-. ...+..|.+
T Consensus 341 -------------~~Gtw~---------------------a------------~n~--~~~~~~~~~l~~n~~~~~g~~~ 372 (441)
T COG3325 341 -------------PKGTWE---------------------A------------GNG--DKDYGKAYDLDANNAGKNGYER 372 (441)
T ss_pred -------------CCCccc---------------------c------------ccc--CccchhhccccccccCCCCeeE
Confidence 001121 0 000 012223344443 455678899
Q ss_pred eeCCCCcceeEecC--CEEEEcCCHHHHHHHHHHHHhcCCceEEeecccccccCCccCCCCCcHHHHHHHHhcc
Q psy4449 741 QRNTKSLEPFTFQG--DQWVSYEDPTSLTEKVKFIKSNGYAGIMAWTIDLDDFHNKCCMESFPLLRAVNRAFGR 812 (2417)
Q Consensus 741 ~~d~~~~~pY~~~~--~~~i~Ydd~~Si~~K~~y~~~~gLgGv~iW~ld~DD~~~~c~~~~~~ll~ai~~~l~~ 812 (2417)
.||+++++||+|+. ++||+|||++||++|++||+++||||+|+|++++| . ...|+++++..|+-
T Consensus 373 ~~d~~a~apyL~n~~~~vFiSyDd~rSvkaK~eYv~~n~LGG~m~We~sgD-~-------n~~llna~~~~l~~ 438 (441)
T COG3325 373 YWDDVAKAPYLYNPEKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEISGD-E-------NGVLLNAVNEGLGF 438 (441)
T ss_pred ecccccccceeecCCCCeEEEccCCcchhhHHHHHhhcCccceEEEEecCC-c-------chhHHHHhhcccCC
Confidence 99999999999984 69999999999999999999999999999999998 2 23799999998863
No 6
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-58 Score=546.50 Aligned_cols=359 Identities=31% Similarity=0.600 Sum_probs=290.9
Q ss_pred CCCCCCEEEEEEecCcccccCCCCCCCCCCCCCCccEEEEEeEEecCCCcEE------------------ccCCCcchhh
Q psy4449 1706 STKDEFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVI------------------KPHDTWADLD 1767 (2417)
Q Consensus 1706 ~~~~~~~vvcY~~~W~~yr~~~~~~~~~~i~~~~cTHIiyaFa~i~~~~~~~------------------~~~d~~~d~~ 1767 (2417)
....++|||+||++|++|.. ..|.|.||+++++|||+|||+.|+.++..+ ...|+|.+..
T Consensus 33 ~~d~~~rvvgYY~sWs~~d~--~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~ 110 (441)
T COG3325 33 TSDDQFKVVGYYTSWSQYDR--QDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPL 110 (441)
T ss_pred CCCCCceEEEEecccccCCC--cccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccc
Confidence 34567999999999999855 589999999999999999999999887421 1256777645
Q ss_pred HHHHHHHHHHHhC--CCEEEEEEcCCCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCC
Q psy4449 1768 NKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQG 1845 (2417)
Q Consensus 1768 ~~~~~~i~~lk~~--glKvllsIGGw~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~ 1845 (2417)
...+..+..+|++ ++|+++|||||..| ..|+.|+++.++|++|++++++||++|+|||||||||||+..+..++..
T Consensus 111 ~G~~~~L~~lk~~~~d~k~l~SIGGWs~S--~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~ 188 (441)
T COG3325 111 KGHFGALFDLKATYPDLKTLISIGGWSDS--GGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCG 188 (441)
T ss_pred cchHHHHHHHhhhCCCceEEEeecccccC--CCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCC
Confidence 5667888888887 57999999999997 4799999999999999999999999999999999999999887777778
Q ss_pred CcchhhhHHHHHHHHHHhcCC------CCcEEEEEECCChhhhcccCCccccccCcceEEEEeccCCCCCCCCCCCCCcC
Q psy4449 1846 PASDKQGFADLIKELRAAFNP------HDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPM 1919 (2417)
Q Consensus 1846 ~~~d~~~~~~llkeLr~~l~~------~~~~Ls~av~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~aPL 1919 (2417)
.+.+++||+.||++||++|+. +.+.||+|.++....+. +.+..+|.++|||||||||||||.|...+||||||
T Consensus 189 ~~~d~~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA~~as~~~l~-~~~~~~~~~~vDyiNiMTYDf~G~Wn~~~Gh~a~L 267 (441)
T COG3325 189 RPKDKANYVLLLQELRKKLDKAGVEDGRHYQLTIAAPASKDKLE-GLNHAEIAQYVDYINIMTYDFHGAWNETLGHHAAL 267 (441)
T ss_pred CcccHHHHHHHHHHHHHHHhhcccccCceEEEEEecCCchhhhh-cccHHHHHHHHhhhheeeeeccccccccccccccc
Confidence 899999999999999999975 45999999998887775 88999999999999999999999999999999999
Q ss_pred CCCCCCCC---CCccHH------HHHHHHHHcCCCCCcEeeeccccceeeEeccCCCCC-CCCcccc----CCCCCCccc
Q psy4449 1920 YALPNDTT---PTFNAN------YSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNG-LNSQTYG----GAEAGENTR 1985 (2417)
Q Consensus 1920 y~~~~~~~---~~~nv~------~~v~~~~~~G~p~~KLvlGiP~YG~~ftl~~~~~~~-~~a~~~g----~g~~g~~t~ 1985 (2417)
|..+.+.. ..+.++ ..++.....++||+|||||+|||||+|..++....+ .+....+ +-..|....
T Consensus 268 y~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~~~~~~~~~~~~q~~~n~g~~~Gtw~a 347 (441)
T COG3325 268 YGTPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGIPKGTWEA 347 (441)
T ss_pred ccCCCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccccccccccCcccCCCCCcccccCCCCCCCCcccc
Confidence 97665532 112222 355555667789999999999999999987765532 1111111 112222211
Q ss_pred cCccchH---HHHH-HhhhcCCcEEEEcCCCceeeEEeeC--CEEEEeCCHHHHHHHHHHhhcCCcceEEEEeccCcccc
Q psy4449 1986 ARGFLAY---YEIC-DKIQKDGWVVVRDRKRRIGPYAFKG--DQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFK 2059 (2417)
Q Consensus 1986 ~~G~l~y---~eic-~~~~~~~~~~~~D~~~~~~py~~~~--~~wv~Ydd~~Si~~K~~~~k~~gLgGvmiW~ld~DDf~ 2059 (2417)
..+.-.| +.|- +.....++.++||++.+ +||.|+. ++||+|||++||+.|++||+++||||+|+|++++|
T Consensus 348 ~n~~~~~~~~~~l~~n~~~~~g~~~~~d~~a~-apyL~n~~~~vFiSyDd~rSvkaK~eYv~~n~LGG~m~We~sgD--- 423 (441)
T COG3325 348 GNGDKDYGKAYDLDANNAGKNGYERYWDDVAK-APYLYNPEKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEISGD--- 423 (441)
T ss_pred cccCccchhhccccccccCCCCeeEecccccc-cceeecCCCCeEEEccCCcchhhHHHHHhhcCccceEEEEecCC---
Confidence 1222222 2332 23446789999999986 8999975 68999999999999999999999999999999999
Q ss_pred CcCCCCCchHHHHHHHHhc
Q psy4449 2060 NFCGCESYPLLKTINRVLR 2078 (2417)
Q Consensus 2060 g~Cg~~~~pLl~ai~~~l~ 2078 (2417)
...-||++|++.|.
T Consensus 424 -----~n~~llna~~~~l~ 437 (441)
T COG3325 424 -----ENGVLLNAVNEGLG 437 (441)
T ss_pred -----cchhHHHHhhcccC
Confidence 35679999999885
No 7
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=1.9e-57 Score=568.55 Aligned_cols=332 Identities=29% Similarity=0.448 Sum_probs=277.9
Q ss_pred EEEEEEecCcccccCCCCCCCCCCCCCCccEEEEEeEEecCCCcEEccCCCcchhhHHHHHHHHHHHhCCCEEEEEEcCC
Q psy4449 1712 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKGVKVTLAIGGW 1791 (2417)
Q Consensus 1712 ~vvcY~~~W~~yr~~~~~~~~~~i~~~~cTHIiyaFa~i~~~~~~~~~~d~~~d~~~~~~~~i~~lk~~glKvllsIGGw 1791 (2417)
|+||||++|+.||++ .+|.|++||.++||||+|+|+.++.++.+.. .+ .. +.+.++.++| ++|||||||||
T Consensus 1 ~~v~Y~~~w~~~r~~-~~~~~~~i~~~~~THi~yaf~~~~~~g~l~~-~~----~~-~~~~~~~~~k--~lkvllsiGG~ 71 (345)
T cd02878 1 KNIAYFEAYNLDRPC-LNMDVTQIDTSKYTHIHFAFANITSDFSVDV-SS----VQ-EQFSDFKKLK--GVKKILSFGGW 71 (345)
T ss_pred CEEEEEChhhcCCCC-CCCCHhHCCcccCCEEEEEeEeecCCCeEee-cc----cH-HHHHHHHhhc--CcEEEEEEeCC
Confidence 589999999999986 5899999999999999999999998764432 22 22 2244555554 49999999999
Q ss_pred CCCCC----cchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCC-CCCCCcchhhhHHHHHHHHHHhcCC
Q psy4449 1792 NDSAG----NKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVD-CKQGPASDKQGFADLIKELRAAFNP 1866 (2417)
Q Consensus 1792 ~~s~~----~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~-~~~~~~~d~~~~~~llkeLr~~l~~ 1866 (2417)
..+.. ..|+.|+ ++++|++||+++++||++|||||||||||||+..+.. ...+.++|+++|+.||+|||++|++
T Consensus 72 ~~s~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~~ 150 (345)
T cd02878 72 DFSTSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLPS 150 (345)
T ss_pred CCCCCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCc
Confidence 87542 2499988 9999999999999999999999999999999743211 1123567999999999999999976
Q ss_pred CCcEEEEEECCChhhhcccCCccccccCcceEEEEeccCCCCCCCCCCCCCcCCCCCCCC---CCCccHHHHHHHHHHcC
Q psy4449 1867 HDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDT---TPTFNANYSLHYWVSHG 1943 (2417)
Q Consensus 1867 ~~~~Ls~av~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~aPLy~~~~~~---~~~~nv~~~v~~~~~~G 1943 (2417)
+++|++++++.... ...||+++|++++||||||+||+||+|+..++|++|........ ....+++.+|++|+++|
T Consensus 151 -~~~ls~a~~~~~~~-~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~~~~~~p~~p~~~~~~~~~~~~~~~~~v~~~~~~G 228 (345)
T cd02878 151 -GKSLSIAAPASYWY-LKGFPIKDMAKYVDYIVYMTYDLHGQWDYGNKWASPGCPAGNCLRSHVNKTETLDALSMITKAG 228 (345)
T ss_pred -CcEEEEEcCCChhh-hcCCcHHHHHhhCcEEEEEeecccCCcCccCCcCCCCCCcccccccCCCchhHHHHHHHHHHcC
Confidence 78999999876544 35799999999999999999999999998888888743321111 12235889999999999
Q ss_pred CCCCcEeeeccccceeeEeccCCCCCCCCccccCC---CCCCccccCccchHHHHHHhh-hcCCcEEEEcCCCceeeEE-
Q psy4449 1944 ADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGA---EAGENTRARGFLAYYEICDKI-QKDGWVVVRDRKRRIGPYA- 2018 (2417)
Q Consensus 1944 ~p~~KLvlGiP~YG~~ftl~~~~~~~~~a~~~g~g---~~g~~t~~~G~l~y~eic~~~-~~~~~~~~~D~~~~~~py~- 2018 (2417)
+|++||+||||||||.|+|.++.++++++|..|++ .+|+++...|.+.|+|||..+ ...+|+..||+..+ +||.
T Consensus 229 vp~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~~~~~~~~~~~d~~~~-~~y~~ 307 (345)
T cd02878 229 VPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEIIDISKSKNKRWYDTDSD-SDILV 307 (345)
T ss_pred CCHHHeEEeeccccceeeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHHHHHHHhccCCCcEEEecCCC-ccEEE
Confidence 99999999999999999999999999999998876 456777778888889999865 45689999999876 5664
Q ss_pred eeCCEEEEeCCHHHHHHHHHHhhcCCcceEEEEeccCc
Q psy4449 2019 FKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 2056 (2417)
Q Consensus 2019 ~~~~~wv~Ydd~~Si~~K~~~~k~~gLgGvmiW~ld~D 2056 (2417)
|+++|||+|||++||+.|++||+++||||+|+|+||+|
T Consensus 308 ~~~~~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 308 YDDDQWVAYMSPATKAARIEWYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred EcCCEEEEcCCHHHHHHHHHHHHhCCCceEEEeeccCC
Confidence 77889999999999999999999999999999999987
No 8
>KOG2806|consensus
Probab=100.00 E-value=4.2e-58 Score=585.50 Aligned_cols=355 Identities=32% Similarity=0.582 Sum_probs=313.3
Q ss_pred CCCEEEEEEecCcccccCCCCCCCCCCCCCCccEEEEEeEEecCCCcEEccCCCcchhhHHHHHHHHHHHhC--CCEEEE
Q psy4449 1709 DEFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTL 1786 (2417)
Q Consensus 1709 ~~~~vvcY~~~W~~yr~~~~~~~~~~i~~~~cTHIiyaFa~i~~~~~~~~~~d~~~d~~~~~~~~i~~lk~~--glKvll 1786 (2417)
....++||+..|+.||.+.+.+.++++++.+|||++|||+.++.++..+...+. ....|++..+.+|++ ++|+||
T Consensus 50 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~TH~vfafa~~~~~~~~~~~~~~---~~~~f~~~~~~~k~~n~~vK~ll 126 (432)
T KOG2806|consen 50 TAQNTVCEKSIVGYYPSRIGPETLEDQDPLKCTHLVYAFAKMKRVGYVVFCGAR---TMNRFSSYNQTAKSSNPTVKVMI 126 (432)
T ss_pred cCccccccceeEEEeCCCCCCCCccccChhhcCcceEEEeeecccccEEeccch---hhhhhHHHHHHHHhhCCCceEEE
Confidence 446789999999999887778899999999999999999999998888776654 245677778888866 699999
Q ss_pred EEcCCCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcchhhhHHHHHHHHHHhcCC
Q psy4449 1787 AIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNP 1866 (2417)
Q Consensus 1787 sIGGw~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~~~~~llkeLr~~l~~ 1866 (2417)
|||||++ .+..|+.|++|++.|+.||++|++||++|+|||||||||||. ....|+.+|..||+|||++|.+
T Consensus 127 SIGG~~~-ns~~fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~--------~~~~d~~~~~~~i~elr~~~~~ 197 (432)
T KOG2806|consen 127 SIGGSHG-NSGLFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPL--------FTPSDQLEFSRFIQELRSAFAR 197 (432)
T ss_pred EecCCCC-CccchhhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCC--------CchhhHHHHHHHHHHHHHHHHH
Confidence 9999963 357899999999999999999999999999999999999994 0367999999999999999975
Q ss_pred CC-------cEEEEEECCChh-hhcccCCccccccCcceEEEEeccCCCCCCC--CCCCCCcCCCCCCCCCCCccHHHHH
Q psy4449 1867 HD-------LLLSAAVSPSKA-VIDNAYDIPVMSENLDWISVMTYDYHGQWDK--KTGHVAPMYALPNDTTPTFNANYSL 1936 (2417)
Q Consensus 1867 ~~-------~~Ls~av~~~~~-~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~--~tg~~aPLy~~~~~~~~~~nv~~~v 1936 (2417)
+. ++|++++.+... ....+||+++|++++||||||+|||||+|+. .+||+||||.......+.+|+++.|
T Consensus 198 ~~~~~~~~~~~l~~~v~~~~~~~~~~~ydi~~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~~~~~~Nvd~~~ 277 (432)
T KOG2806|consen 198 ETLKSPDTAKVLEAVVADSKQSAYSDGYDYENLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSMTNPKMNVDSLL 277 (432)
T ss_pred HhhccCCccceeeeccccCccchhhccCCHHHHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCCcccccCcchhhhH
Confidence 32 256666655544 6788999999999999999999999999999 8999999998765445678999999
Q ss_pred HHHHHcCCCCCcEeeeccccceeeEeccCCCCCCCCccccCCCCCC-ccccCccchHHHHHHhhhcCCcEEEEcCCCcee
Q psy4449 1937 HYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGE-NTRARGFLAYYEICDKIQKDGWVVVRDRKRRIG 2015 (2417)
Q Consensus 1937 ~~~~~~G~p~~KLvlGiP~YG~~ftl~~~~~~~~~a~~~g~g~~g~-~t~~~G~l~y~eic~~~~~~~~~~~~D~~~~~~ 2015 (2417)
+||+++|.|++||+||||||||.|++++...+ .+++..+++.++. .+...|+++|.|||+.+.+.+ ..+||+..+ .
T Consensus 278 ky~~~~~~~~~Kl~~gip~yg~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~-~~~~d~~~~-~ 354 (432)
T KOG2806|consen 278 KYWTEKGLPPSKLVLALPFYGRSWQLLEDSRS-SAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTG-VTHWDEETQ-T 354 (432)
T ss_pred HHHhhcCCCchheEEEEecceehhhhcCCcCC-CCCccCCCcccCccccccCceeeHHHHHHHhcccC-CceecCCce-e
Confidence 99999999999999999999999999998777 8889999999887 788999999999999776655 789999987 5
Q ss_pred eEEee--CCEEEEeCCHHHHHHHHHHhhcCCcceEEEEeccCccccCc-CCC-CCchHHHHHHHHhc
Q psy4449 2016 PYAFK--GDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKNF-CGC-ESYPLLKTINRVLR 2078 (2417)
Q Consensus 2016 py~~~--~~~wv~Ydd~~Si~~K~~~~k~~gLgGvmiW~ld~DDf~g~-Cg~-~~~pLl~ai~~~l~ 2078 (2417)
||+|+ +++||+|||++||+.|++||+++||||+|||+||+||++|. |+. ..+|++.++.+.+.
T Consensus 355 ~Y~~~~~~~~wvtyen~~Si~~K~~Yvk~~~lGGv~iW~vd~DD~~~~~~~~~~~~~~~~~~~~~~~ 421 (432)
T KOG2806|consen 355 PYLYNIPYDQWVTYENERSIHIKADYAKDEGLGGVAIWNIDQDDESGSLLNAALSRPQTCSICLKNH 421 (432)
T ss_pred eeEEecCCCeEEecCCHHHHHHHHHHHHhcCCceEEEEeccCCCCCCccccccccccceeecccccc
Confidence 99999 99999999999999999999999999999999999999996 663 68999999888774
No 9
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=6e-57 Score=564.10 Aligned_cols=333 Identities=24% Similarity=0.438 Sum_probs=276.0
Q ss_pred eEEEEEeeccCCCCCCCCCCccccCCCCccEEEEEeEEecCCcceEecCCCCcccchhHHHHhhcCCcccCCCcEEEEEe
Q psy4449 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFYQRISSSPLVTHGKVKILIAI 463 (2417)
Q Consensus 384 ~vvcY~~~W~~~~~g~~~~~~~~i~~~~~THIiyaFa~~~~~~~~~~~~d~~~d~~~~~~~~~~~lk~~~~p~lKvllSi 463 (2417)
|+||||++|+.+|.+ ..|.|++||.++||||+|+|+.+++++ .+...+ . .+.+.++..+| ++||||||
T Consensus 1 ~~v~Y~~~w~~~r~~-~~~~~~~i~~~~~THi~yaf~~~~~~g-~l~~~~----~-~~~~~~~~~~k-----~lkvllsi 68 (345)
T cd02878 1 KNIAYFEAYNLDRPC-LNMDVTQIDTSKYTHIHFAFANITSDF-SVDVSS----V-QEQFSDFKKLK-----GVKKILSF 68 (345)
T ss_pred CEEEEEChhhcCCCC-CCCCHhHCCcccCCEEEEEeEeecCCC-eEeecc----c-HHHHHHHHhhc-----CcEEEEEE
Confidence 689999999999986 589999999999999999999999875 333322 1 23345555555 49999999
Q ss_pred cCCCCCCCc----chhhhccCHHHHHHHHHHHHHHhhhCCcceEEEEecCCCccCCcC-CCCCcchhhhHHHHHHHHHHH
Q psy4449 464 GGWTDSSGE----KYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQADC-SKQHKADKGNFVKLIQELKAE 538 (2417)
Q Consensus 464 GGw~~s~g~----~fs~~~s~~~~R~~fi~svv~~l~~ygfDGiDiDwEyP~~~~~~~-~~~~~~d~~nf~~ll~eLR~~ 538 (2417)
|||..+.+. .|+.++ ++++|++||+++++|+++|||||||||||||+..+..+ ..+.++|++||+.||+|||++
T Consensus 69 GG~~~s~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~ 147 (345)
T cd02878 69 GGWDFSTSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSK 147 (345)
T ss_pred eCCCCCCCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 999976432 488888 99999999999999999999999999999998644321 234567999999999999999
Q ss_pred hccCCcceEeeccchhhhhhhcCCccccccccceEEEEeeccCCCCCCCcCCCCCCCCCCCCC---CCCCCHHHHHHHHH
Q psy4449 539 FDKHDYSIAVGISGYKEILEVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEP---YPNYNINTALKLID 615 (2417)
Q Consensus 539 f~~~~~~Lsvav~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~sPL~~~~~~~---~~~~~v~~~v~~~~ 615 (2417)
|++ +++|++++++.... ...||+++|.+++||||||+|||||+|+..++|++|..+..... ....+++.+|+.|+
T Consensus 148 l~~-~~~ls~a~~~~~~~-~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~~~~~~p~~p~~~~~~~~~~~~~~~~~v~~~~ 225 (345)
T cd02878 148 LPS-GKSLSIAAPASYWY-LKGFPIKDMAKYVDYIVYMTYDLHGQWDYGNKWASPGCPAGNCLRSHVNKTETLDALSMIT 225 (345)
T ss_pred hCc-CcEEEEEcCCChhh-hcCCcHHHHHhhCcEEEEEeecccCCcCccCCcCCCCCCcccccccCCCchhHHHHHHHHH
Confidence 987 68899998775443 35699999999999999999999999998888888854322111 12346889999999
Q ss_pred HhCCCCCcEEEeecccceeeeeccCCCCCCCCcccCCCC---CCcccCCccchhHHHHHHHHhcCcccccccccCCCcCc
Q psy4449 616 ELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGL---AGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPRS 692 (2417)
Q Consensus 616 ~~G~p~~KLvlGvP~YGr~~~l~~~~~~g~~~~~~g~g~---~g~~t~~~g~~~y~eic~~~~~~~w~~~~~~~~~~~~~ 692 (2417)
+.|+|++|||||||||||+|+|+++.++++++++.|+|. .|+++...|.+.|+|||..+..
T Consensus 226 ~~Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~~~---------------- 289 (345)
T cd02878 226 KAGVPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEIIDIS---------------- 289 (345)
T ss_pred HcCCCHHHeEEeeccccceeeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHHHHHHHhc----------------
Confidence 999999999999999999999999999999999998863 5667777777788898875421
Q ss_pred cCccccccccCCCCCCCCCCCCCccccCCCchhhhhhhhhhccCceeEeeCCCCcceeE-ecCCEEEEcCCHHHHHHHHH
Q psy4449 693 MGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFT-FQGDQWVSYEDPTSLTEKVK 771 (2417)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~w~~~~d~~~~~pY~-~~~~~~i~Ydd~~Si~~K~~ 771 (2417)
+..|...||..+++||. |.+++||+|||++||+.|++
T Consensus 290 ------------------------------------------~~~~~~~~d~~~~~~y~~~~~~~wv~ydd~~Si~~K~~ 327 (345)
T cd02878 290 ------------------------------------------KSKNKRWYDTDSDSDILVYDDDQWVAYMSPATKAARIE 327 (345)
T ss_pred ------------------------------------------cCCCcEEEecCCCccEEEEcCCEEEEcCCHHHHHHHHH
Confidence 12345789999999986 67789999999999999999
Q ss_pred HHHhcCCceEEeeccccc
Q psy4449 772 FIKSNGYAGIMAWTIDLD 789 (2417)
Q Consensus 772 y~~~~gLgGv~iW~ld~D 789 (2417)
||+++||||+|+|+||+|
T Consensus 328 y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 328 WYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred HHHhCCCceEEEeeccCC
Confidence 999999999999999987
No 10
>KOG2806|consensus
Probab=100.00 E-value=4.2e-57 Score=576.30 Aligned_cols=358 Identities=28% Similarity=0.494 Sum_probs=308.0
Q ss_pred CCCCeEEEEEeeccCCCCCCCCCCccccCCCCccEEEEEeEEecCCcceEecCCCCcccchhHHHHhhcCCcccCCCcEE
Q psy4449 380 EPEPKVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFYQRISSSPLVTHGKVKI 459 (2417)
Q Consensus 380 ~~~~~vvcY~~~W~~~~~g~~~~~~~~i~~~~~THIiyaFa~~~~~~~~~~~~d~~~d~~~~~~~~~~~lk~~~~p~lKv 459 (2417)
...+.+|||+..|+.++.+.+.+.+.+++..+|||+||+|+.++.++..+...+. ..+.++...+.+| .++|+||+
T Consensus 49 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~TH~vfafa~~~~~~~~~~~~~~---~~~~f~~~~~~~k-~~n~~vK~ 124 (432)
T KOG2806|consen 49 FTAQNTVCEKSIVGYYPSRIGPETLEDQDPLKCTHLVYAFAKMKRVGYVVFCGAR---TMNRFSSYNQTAK-SSNPTVKV 124 (432)
T ss_pred ccCccccccceeEEEeCCCCCCCCccccChhhcCcceEEEeeecccccEEeccch---hhhhhHHHHHHHH-hhCCCceE
Confidence 3457888888888888877668999999999999999999999999877776553 2345666666666 66799999
Q ss_pred EEEecCCCCCCCcchhhhccCHHHHHHHHHHHHHHhhhCCcceEEEEecCCCccCCcCCCCCcchhhhHHHHHHHHHHHh
Q psy4449 460 LIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEF 539 (2417)
Q Consensus 460 llSiGGw~~s~g~~fs~~~s~~~~R~~fi~svv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~nf~~ll~eLR~~f 539 (2417)
|||||||.+. +..|+.|+++++.|+.||+|+++|+++|+|||||||||||+ ....|+.+|..||+|||++|
T Consensus 125 llSIGG~~~n-s~~fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~--------~~~~d~~~~~~~i~elr~~~ 195 (432)
T KOG2806|consen 125 MISIGGSHGN-SGLFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPL--------FTPSDQLEFSRFIQELRSAF 195 (432)
T ss_pred EEEecCCCCC-ccchhhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCC--------CchhhHHHHHHHHHHHHHHH
Confidence 9999999532 27899999999999999999999999999999999999995 03679999999999999999
Q ss_pred ccCC-------cceEeeccchhh-hhhhcCCccccccccceEEEEeeccCCCCCC--CcCCCCCCCCCCCCCCCCCCHHH
Q psy4449 540 DKHD-------YSIAVGISGYKE-ILEVAYDFPALNDHVEFMSLMSYDYHGAWEG--ITGLVSPLNSRPGEPYPNYNINT 609 (2417)
Q Consensus 540 ~~~~-------~~Lsvav~~~~~-~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~--~tg~~sPL~~~~~~~~~~~~v~~ 609 (2417)
.+.. .+|.+++...+. .+..+||+++|.+++||||||+|||||+|++ .+||+||||.........+|++.
T Consensus 196 ~~~~~~~~~~~~~l~~~v~~~~~~~~~~~ydi~~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~~~~~~Nvd~ 275 (432)
T KOG2806|consen 196 ARETLKSPDTAKVLEAVVADSKQSAYSDGYDYENLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSMTNPKMNVDS 275 (432)
T ss_pred HHHhhccCCccceeeeccccCccchhhccCCHHHHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCCcccccCcchhh
Confidence 8653 245555444333 6778999999999999999999999999998 89999999987664556799999
Q ss_pred HHHHHHHhCCCCCcEEEeecccceeeeeccCCCCCCCCcccCCCCCCc-ccCCccchhHHHHHHHHhcCcccccccccCC
Q psy4449 610 ALKLIDELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGE-YTQQPGMLAYYEICYRIKTRKWTVQRNTKSL 688 (2417)
Q Consensus 610 ~v~~~~~~G~p~~KLvlGvP~YGr~~~l~~~~~~g~~~~~~g~g~~g~-~t~~~g~~~y~eic~~~~~~~w~~~~~~~~~ 688 (2417)
.|++|++.|.|++|||||||||||.|+++....+ .+.+..+++..|. .+...|.++|+|||..+.+.+
T Consensus 276 ~~ky~~~~~~~~~Kl~~gip~yg~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~---------- 344 (432)
T KOG2806|consen 276 LLKYWTEKGLPPSKLVLALPFYGRSWQLLEDSRS-SAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTG---------- 344 (432)
T ss_pred hHHHHhhcCCCchheEEEEecceehhhhcCCcCC-CCCccCCCcccCccccccCceeeHHHHHHHhcccC----------
Confidence 9999999999999999999999999999987766 7778888887776 778899999999998543210
Q ss_pred CcCccCccccccccCCCCCCCCCCCCCccccCCCchhhhhhhhhhccCceeEeeCCCCcceeEec--CCEEEEcCCHHHH
Q psy4449 689 EPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQ--GDQWVSYEDPTSL 766 (2417)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~w~~~~d~~~~~pY~~~--~~~~i~Ydd~~Si 766 (2417)
...||+..++||+|+ +++||+|||++||
T Consensus 345 --------------------------------------------------~~~~d~~~~~~Y~~~~~~~~wvtyen~~Si 374 (432)
T KOG2806|consen 345 --------------------------------------------------VTHWDEETQTPYLYNIPYDQWVTYENERSI 374 (432)
T ss_pred --------------------------------------------------CceecCCceeeeEEecCCCeEEecCCHHHH
Confidence 267899999999999 9999999999999
Q ss_pred HHHHHHHHhcCCceEEeecccccccCCccCC--CCCcHHHHHHHHhc
Q psy4449 767 TEKVKFIKSNGYAGIMAWTIDLDDFHNKCCM--ESFPLLRAVNRAFG 811 (2417)
Q Consensus 767 ~~K~~y~~~~gLgGv~iW~ld~DD~~~~c~~--~~~~ll~ai~~~l~ 811 (2417)
++|++||+++||||||+|+||+||+.+.|++ ..+|++.++.+.+.
T Consensus 375 ~~K~~Yvk~~~lGGv~iW~vd~DD~~~~~~~~~~~~~~~~~~~~~~~ 421 (432)
T KOG2806|consen 375 HIKADYAKDEGLGGVAIWNIDQDDESGSLLNAALSRPQTCSICLKNH 421 (432)
T ss_pred HHHHHHHHhcCCceEEEEeccCCCCCCccccccccccceeecccccc
Confidence 9999999999999999999999999998775 58889988887664
No 11
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=3.7e-55 Score=545.06 Aligned_cols=298 Identities=30% Similarity=0.600 Sum_probs=264.4
Q ss_pred EEEEEeeccCCCCCCCCCCcc-ccCCCCccEEEEEeEEecCCcceEecCCCCc---------------ccchhHHHHhhc
Q psy4449 385 VVCYVTNWSGSRKSDGKFVPE-NIDYKLCTHIVYAFASLDPNTLSIQAGNPEA---------------DIDDNFYQRISS 448 (2417)
Q Consensus 385 vvcY~~~W~~~~~g~~~~~~~-~i~~~~~THIiyaFa~~~~~~~~~~~~d~~~---------------d~~~~~~~~~~~ 448 (2417)
|||||++|+.||++ +.+. +||.++||||+|+|+.+++++..+...+.+. +...+.+..+..
T Consensus 1 v~~Y~~~W~~~~~~---~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (322)
T cd06548 1 VVGYFTNWGIYGRN---YFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLRK 77 (322)
T ss_pred CEEEeCCCcccCCC---CCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHHH
Confidence 69999999999974 4555 7999999999999999999886665443322 223456777888
Q ss_pred CCcccCCCcEEEEEecCCCCCCCcchhhhccCHHHHHHHHHHHHHHhhhCCcceEEEEecCCCccCCcCCCCCcchhhhH
Q psy4449 449 SPLVTHGKVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHKADKGNF 528 (2417)
Q Consensus 449 lk~~~~p~lKvllSiGGw~~s~g~~fs~~~s~~~~R~~fi~svv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~nf 528 (2417)
|| .++|++|||||||||+.+ ..|+.|+++++.|++||+++++|+++|+|||||||||||+..+.+|+.+.++|+++|
T Consensus 78 lk-~~~p~lkvl~siGG~~~s--~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~ 154 (322)
T cd06548 78 LK-QKNPHLKILLSIGGWTWS--GGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENF 154 (322)
T ss_pred HH-HhCCCCEEEEEEeCCCCC--CCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHH
Confidence 87 678999999999999976 579999999999999999999999999999999999999877777777778999999
Q ss_pred HHHHHHHHHHhccC------CcceEeeccchhhhhhhcCCccccccccceEEEEeeccCCCCCCCcCCCCCCCCCCCCCC
Q psy4449 529 VKLIQELKAEFDKH------DYSIAVGISGYKEILEVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPY 602 (2417)
Q Consensus 529 ~~ll~eLR~~f~~~------~~~Lsvav~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~sPL~~~~~~~~ 602 (2417)
+.||++||++|++. .++|++++++..... ..+++++|.++|||||||+|||||+|+..+||+||||..+.++.
T Consensus 155 ~~ll~~Lr~~l~~~~~~~~~~~~Ls~av~~~~~~~-~~~~~~~l~~~vD~vnlMtYD~~g~w~~~~g~~spL~~~~~~~~ 233 (322)
T cd06548 155 TLLLKELREALDALGAETGRKYLLTIAAPAGPDKL-DKLEVAEIAKYLDFINLMTYDFHGAWSNTTGHHSNLYASPADPP 233 (322)
T ss_pred HHHHHHHHHHHHHhhhccCCceEEEEEccCCHHHH-hcCCHHHHhhcCCEEEEEEeeccCCCCCCCCCCCCCCCCCCCCC
Confidence 99999999999875 399999998876544 35789999999999999999999999999999999998887666
Q ss_pred CCCCHHHHHHHHHHhCCCCCcEEEeecccceeeeeccCCCCCCCCcccCCCCCCcccCCccchhHHHHHHHHhcCccccc
Q psy4449 603 PNYNINTALKLIDELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQ 682 (2417)
Q Consensus 603 ~~~~v~~~v~~~~~~G~p~~KLvlGvP~YGr~~~l~~~~~~g~~~~~~g~g~~g~~t~~~g~~~y~eic~~~~~~~w~~~ 682 (2417)
..++++.+|+.|+..|+|++|||||||||||+|++ |
T Consensus 234 ~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~-----------------------------------------~--- 269 (322)
T cd06548 234 GGYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWTG-----------------------------------------Y--- 269 (322)
T ss_pred CCccHHHHHHHHHHcCCCHHHeEEEecccccccCC-----------------------------------------c---
Confidence 77899999999999999999999999999999963 1
Q ss_pred ccccCCCcCccCccccccccCCCCCCCCCCCCCccccCCCchhhhhhhhhhccCceeEeeCCCCcceeEecC--CEEEEc
Q psy4449 683 RNTKSLEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQG--DQWVSY 760 (2417)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~w~~~~d~~~~~pY~~~~--~~~i~Y 760 (2417)
...||+.+++||+|++ ++||+|
T Consensus 270 --------------------------------------------------------~~~~D~~~~~~y~~~~~~~~~v~y 293 (322)
T cd06548 270 --------------------------------------------------------TRYWDEVAKAPYLYNPSTKTFISY 293 (322)
T ss_pred --------------------------------------------------------EEEEcCCcceeEEEeCCCCeEEEe
Confidence 2678999999999988 899999
Q ss_pred CCHHHHHHHHHHHHhcCCceEEeeccccc
Q psy4449 761 EDPTSLTEKVKFIKSNGYAGIMAWTIDLD 789 (2417)
Q Consensus 761 dd~~Si~~K~~y~~~~gLgGv~iW~ld~D 789 (2417)
||++||++|++||+++||||+|+|+|++|
T Consensus 294 dd~~Si~~K~~~a~~~~LgGv~~W~l~~D 322 (322)
T cd06548 294 DDPRSIKAKADYVKDKGLGGVMFWELSGD 322 (322)
T ss_pred CCHHHHHHHHHHHHhcCCccEEEEeccCC
Confidence 99999999999999999999999999997
No 12
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=1.1e-54 Score=540.88 Aligned_cols=296 Identities=34% Similarity=0.681 Sum_probs=261.0
Q ss_pred EEEEEecCcccccCCCCCCCC-CCCCCCccEEEEEeEEecCCCcEEccCCCcc---------------hhhHHHHHHHHH
Q psy4449 1713 IVCYFTNWAWYRQSGGKYLPS-DIDSDLCTHVIYGFAVLDTDQLVIKPHDTWA---------------DLDNKFYEKVTA 1776 (2417)
Q Consensus 1713 vvcY~~~W~~yr~~~~~~~~~-~i~~~~cTHIiyaFa~i~~~~~~~~~~d~~~---------------d~~~~~~~~i~~ 1776 (2417)
|+|||++|+.||.+ +.+. +||+++||||+|||+.++.++.++...+.|. +.....++++..
T Consensus 1 v~~Y~~~W~~~~~~---~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (322)
T cd06548 1 VVGYFTNWGIYGRN---YFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLRK 77 (322)
T ss_pred CEEEeCCCcccCCC---CCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHHH
Confidence 68999999999864 4556 7999999999999999999887766544332 223456777888
Q ss_pred HHhC--CCEEEEEEcCCCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcchhhhHH
Q psy4449 1777 LKKK--GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFA 1854 (2417)
Q Consensus 1777 lk~~--glKvllsIGGw~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~~~~ 1854 (2417)
||++ ++|||||||||+.+ ..|+.|+++++.|++||+++++||++|+|||||||||||...+.+++.+.++|+++|+
T Consensus 78 lk~~~p~lkvl~siGG~~~s--~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~ 155 (322)
T cd06548 78 LKQKNPHLKILLSIGGWTWS--GGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFT 155 (322)
T ss_pred HHHhCCCCEEEEEEeCCCCC--CCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHH
Confidence 8875 69999999999875 5799999999999999999999999999999999999998554444555678999999
Q ss_pred HHHHHHHHhcCCC------CcEEEEEECCChhhhcccCCccccccCcceEEEEeccCCCCCCCCCCCCCcCCCCCCCCCC
Q psy4449 1855 DLIKELRAAFNPH------DLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTP 1928 (2417)
Q Consensus 1855 ~llkeLr~~l~~~------~~~Ls~av~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~aPLy~~~~~~~~ 1928 (2417)
.||++||++|++. +++|++++++..... ..+++++|+++|||||||+|||||.|+..+||+||||..+.+...
T Consensus 156 ~ll~~Lr~~l~~~~~~~~~~~~Ls~av~~~~~~~-~~~~~~~l~~~vD~vnlMtYD~~g~w~~~~g~~spL~~~~~~~~~ 234 (322)
T cd06548 156 LLLKELREALDALGAETGRKYLLTIAAPAGPDKL-DKLEVAEIAKYLDFINLMTYDFHGAWSNTTGHHSNLYASPADPPG 234 (322)
T ss_pred HHHHHHHHHHHHhhhccCCceEEEEEccCCHHHH-hcCCHHHHhhcCCEEEEEEeeccCCCCCCCCCCCCCCCCCCCCCC
Confidence 9999999999874 599999998876554 467899999999999999999999999999999999987765556
Q ss_pred CccHHHHHHHHHHcCCCCCcEeeeccccceeeEeccCCCCCCCCccccCCCCCCccccCccchHHHHHHhhhcCCcEEEE
Q psy4449 1929 TFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVR 2008 (2417)
Q Consensus 1929 ~~nv~~~v~~~~~~G~p~~KLvlGiP~YG~~ftl~~~~~~~~~a~~~g~g~~g~~t~~~G~l~y~eic~~~~~~~~~~~~ 2008 (2417)
.++++.+|++|++.|+|++|||||||||||.|++ |...|
T Consensus 235 ~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~-----------------------------------------~~~~~ 273 (322)
T cd06548 235 GYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWTG-----------------------------------------YTRYW 273 (322)
T ss_pred CccHHHHHHHHHHcCCCHHHeEEEecccccccCC-----------------------------------------cEEEE
Confidence 7899999999999999999999999999999964 67899
Q ss_pred cCCCceeeEEeeC--CEEEEeCCHHHHHHHHHHhhcCCcceEEEEeccCc
Q psy4449 2009 DRKRRIGPYAFKG--DQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 2056 (2417)
Q Consensus 2009 D~~~~~~py~~~~--~~wv~Ydd~~Si~~K~~~~k~~gLgGvmiW~ld~D 2056 (2417)
|+.++ .||+|++ ++||+|||++||+.|++||+++||||+|+|+|++|
T Consensus 274 D~~~~-~~y~~~~~~~~~v~ydd~~Si~~K~~~a~~~~LgGv~~W~l~~D 322 (322)
T cd06548 274 DEVAK-APYLYNPSTKTFISYDDPRSIKAKADYVKDKGLGGVMFWELSGD 322 (322)
T ss_pred cCCcc-eeEEEeCCCCeEEEeCCHHHHHHHHHHHHhcCCccEEEEeccCC
Confidence 99876 7999988 89999999999999999999999999999999997
No 13
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=1.6e-54 Score=531.85 Aligned_cols=281 Identities=34% Similarity=0.680 Sum_probs=243.4
Q ss_pred CEEEEEEecCcccccCCCCCCCCCCCCCCccEEEEEeEEecCCCcEEccCCCcchhhHHHHHHHHHHHhC--CCEEEEEE
Q psy4449 1711 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAI 1788 (2417)
Q Consensus 1711 ~~vvcY~~~W~~yr~~~~~~~~~~i~~~~cTHIiyaFa~i~~~~~~~~~~d~~~d~~~~~~~~i~~lk~~--glKvllsI 1788 (2417)
-+++|||++|+ ++|.|++||+++||||+|+|+.++.++..+...+. . ...+.+.++.+|++ ++||||||
T Consensus 3 ~~~~~Y~~~w~------~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~~~-~--~~~~~~~~~~~k~~~~~lkvlisi 73 (299)
T cd02879 3 IVKGGYWPAWS------EEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISPS-D--ESEFSTFTETVKRKNPSVKTLLSI 73 (299)
T ss_pred eEEEEEECCCC------CCCChhHCCcccCCEEEEEEEEecCCCCEEeeccc-c--HHHHHHHHHHHHHhCCCCeEEEEE
Confidence 36899999998 57999999999999999999999987765544331 1 12233334455554 69999999
Q ss_pred cCCCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcchhhhHHHHHHHHHHhcCC--
Q psy4449 1789 GGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNP-- 1866 (2417)
Q Consensus 1789 GGw~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~~~~~llkeLr~~l~~-- 1866 (2417)
|||+.+ ++.|+.|++++++|++||+++++||++|||||||||||||. .++|+++|+.||+|||++|++
T Consensus 74 GG~~~~-s~~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~---------~~~d~~n~~~ll~elr~~l~~~~ 143 (299)
T cd02879 74 GGGGSD-SSAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPS---------SQVEMENFGKLLEEWRAAVKDEA 143 (299)
T ss_pred eCCCCC-CchhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCC---------ChhHHHHHHHHHHHHHHHHHHHh
Confidence 999874 47899999999999999999999999999999999999996 367999999999999999972
Q ss_pred -----CCcEEEEEECCChhh----hcccCCccccccCcceEEEEeccCCCCCCC-CCCCCCcCCCCCCCCCCCccHHHHH
Q psy4449 1867 -----HDLLLSAAVSPSKAV----IDNAYDIPVMSENLDWISVMTYDYHGQWDK-KTGHVAPMYALPNDTTPTFNANYSL 1936 (2417)
Q Consensus 1867 -----~~~~Ls~av~~~~~~----~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~-~tg~~aPLy~~~~~~~~~~nv~~~v 1936 (2417)
++++|++++++.... ...+||+++|+++|||||||+||+||+|+. .+||+||||..+ ..++++.+|
T Consensus 144 ~~~~~~~~~ls~av~~~~~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~----~~~~~~~~v 219 (299)
T cd02879 144 RSSGRPPLLLTAAVYFSPILFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPN----SNVSTDYGI 219 (299)
T ss_pred hccCCCcEEEEeecccchhhccccccccCCHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCC----CCCCHHHHH
Confidence 579999999876544 456799999999999999999999999986 578999999743 347899999
Q ss_pred HHHHHcCCCCCcEeeeccccceeeEeccCCCCCCCCccccCCCCCCccccCccchHHHHHHhhhcCCcEEEEcCCCceee
Q psy4449 1937 HYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGP 2016 (2417)
Q Consensus 1937 ~~~~~~G~p~~KLvlGiP~YG~~ftl~~~~~~~~~a~~~g~g~~g~~t~~~G~l~y~eic~~~~~~~~~~~~D~~~~~~p 2016 (2417)
++|++.|+|++|||||||||||.|++ ||+.. ..+
T Consensus 220 ~~~~~~g~p~~KlvlGvp~YGr~~~~---------------------------------------------~D~~~-~~~ 253 (299)
T cd02879 220 KSWIKAGVPAKKLVLGLPLYGRAWTL---------------------------------------------YDTTT-VSS 253 (299)
T ss_pred HHHHHcCCCHHHEEEEeccccccccc---------------------------------------------cCCCc-ceE
Confidence 99999999999999999999999974 56654 379
Q ss_pred EEeeCCEEEEeCCHHHHHHHHHHhhcCCcceEEEEeccCccccC
Q psy4449 2017 YAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKN 2060 (2417)
Q Consensus 2017 y~~~~~~wv~Ydd~~Si~~K~~~~k~~gLgGvmiW~ld~DDf~g 2060 (2417)
|+|++++||+|||++||+.|++||+++||||+|+|+|++||+++
T Consensus 254 y~~~~~~wi~ydd~~Si~~K~~~a~~~~lgGv~~W~l~~Dd~~~ 297 (299)
T cd02879 254 YVYAGTTWIGYDDVQSIAVKVKYAKQKGLLGYFAWAVGYDDNNW 297 (299)
T ss_pred EEEECCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEEeecCCccc
Confidence 99999999999999999999999999999999999999999865
No 14
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=3.1e-54 Score=542.65 Aligned_cols=324 Identities=42% Similarity=0.845 Sum_probs=288.4
Q ss_pred EEEEEEecCcccccCCCCCCCCCCCCCCccEEEEEeEEecCCCcEEccCCCcchhhHHHHHHHHHHHhC--CCEEEEEEc
Q psy4449 1712 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIG 1789 (2417)
Q Consensus 1712 ~vvcY~~~W~~yr~~~~~~~~~~i~~~~cTHIiyaFa~i~~~~~~~~~~d~~~d~~~~~~~~i~~lk~~--glKvllsIG 1789 (2417)
+|+|||++|+.+| ..|.+++++.++||||+|+|+.++.++.+. ..+++.+. ..+..++.+|++ ++||||+||
T Consensus 1 ~~~~Y~~~w~~~~---~~~~~~~~~~~~~thv~~~~~~~~~~g~~~-~~~~~~~~--~~~~~~~~l~~~~~~~kvl~svg 74 (334)
T smart00636 1 RVVGYFTNWGVYG---RNFPVDDIPASKLTHIIYAFANIDPDGTVT-IGDEWADI--GNFGQLKALKKKNPGLKVLLSIG 74 (334)
T ss_pred CEEEEECchhccC---CCCChhHCCcccCcEEEEeeeeeCCCCCEe-eCCcchhh--hhHHHHHHHHHhCCCCEEEEEEe
Confidence 5899999999765 479999999999999999999999976543 33444432 234567778776 899999999
Q ss_pred CCCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcchhhhHHHHHHHHHHhcCC---
Q psy4449 1790 GWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNP--- 1866 (2417)
Q Consensus 1790 Gw~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~~~~~llkeLr~~l~~--- 1866 (2417)
||..+ ..|+.|+++++.|++||++|+++|++|+|||||||||||.. ...++++|+.||++||++|++
T Consensus 75 g~~~s--~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~--------~~~d~~~~~~ll~~lr~~l~~~~~ 144 (334)
T smart00636 75 GWTES--DNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGA--------RGDDRENYTALLKELREALDKEGA 144 (334)
T ss_pred CCCCC--cchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCC--------CccHHHHHHHHHHHHHHHHHHhcc
Confidence 99874 67999999999999999999999999999999999999962 116889999999999999985
Q ss_pred --CCcEEEEEECCChhhhcccCC-ccccccCcceEEEEeccCCCCCCCCCCCCCcCCCCCCCCCCCccHHHHHHHHHHcC
Q psy4449 1867 --HDLLLSAAVSPSKAVIDNAYD-IPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHG 1943 (2417)
Q Consensus 1867 --~~~~Ls~av~~~~~~~~~~yd-~~~l~~~vD~i~vMtYD~~g~w~~~tg~~aPLy~~~~~~~~~~nv~~~v~~~~~~G 1943 (2417)
++++|++++++........|+ +++|.+++|||+||+||+|++|+..+||+|||++...+. ..++++.+|++|++.|
T Consensus 145 ~~~~~~lsi~v~~~~~~~~~~~~~~~~l~~~vD~v~vm~YD~~~~~~~~~g~~spl~~~~~~~-~~~~v~~~v~~~~~~g 223 (334)
T smart00636 145 EGKGYLLTIAVPAGPDKIDKGYGDLPAIAKYLDFINLMTYDFHGAWSNPTGHNAPLYAGPGDP-EKYNVDYAVKYYLCKG 223 (334)
T ss_pred cCCceEEEEEecCChHHHHhhhhhHHHHHhhCcEEEEeeeccCCCCCCCCCCCCcCCCCCCCC-CCccHHHHHHHHHHcC
Confidence 489999999987666656789 599999999999999999999999999999999876554 5679999999999999
Q ss_pred CCCCcEeeeccccceeeEeccCCCCCCCCccccCCCCCCccccCccchHHHHHHhhhcCCcEEEEcCCCceeeEEee-C-
Q psy4449 1944 ADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK-G- 2021 (2417)
Q Consensus 1944 ~p~~KLvlGiP~YG~~ftl~~~~~~~~~a~~~g~g~~g~~t~~~G~l~y~eic~~~~~~~~~~~~D~~~~~~py~~~-~- 2021 (2417)
+|++||+||||||||.|++.+...++++++..|++.+|+.+...|.++|.|||+.+ +|...||+.+ .++|+|+ +
T Consensus 224 vp~~KlvlGip~YG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~---~~~~~~d~~~-~~~y~~~~~~ 299 (334)
T smart00636 224 VPPSKLVLGIPFYGRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLL---GATVVWDDTA-KAPYAYNPGT 299 (334)
T ss_pred CCHHHeEEeeccccCccccCCCCcCCCCCcccCCCCCCCCCCcccchhHHHHHhhc---CcEEEEcCCC-ceeEEEECCC
Confidence 99999999999999999999988889999999999999999999999999999876 8999999996 5899998 4
Q ss_pred CEEEEeCCHHHHHHHHHHhhcCCcceEEEEeccCc
Q psy4449 2022 DQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 2056 (2417)
Q Consensus 2022 ~~wv~Ydd~~Si~~K~~~~k~~gLgGvmiW~ld~D 2056 (2417)
.+||+|||++||+.|++|++++||||+|+|+|++|
T Consensus 300 ~~~v~ydd~~Si~~K~~~~~~~~lgGv~iW~l~~D 334 (334)
T smart00636 300 GQWVSYDDPRSIKAKADYVKDKGLGGVMIWELDAD 334 (334)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCCeEEEEeecCC
Confidence 49999999999999999999999999999999997
No 15
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=2.5e-54 Score=530.08 Aligned_cols=282 Identities=31% Similarity=0.610 Sum_probs=244.0
Q ss_pred CeEEEEEeeccCCCCCCCCCCccccCCCCccEEEEEeEEecCCcceEecCCCCcccchhHHHHh-hcCCcccCCCcEEEE
Q psy4449 383 PKVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFYQRI-SSSPLVTHGKVKILI 461 (2417)
Q Consensus 383 ~~vvcY~~~W~~~~~g~~~~~~~~i~~~~~THIiyaFa~~~~~~~~~~~~d~~~d~~~~~~~~~-~~lk~~~~p~lKvll 461 (2417)
-+++|||++|+ ++|.|++||.++||||+|+|+.+++++..+...+. +...+..+ ..+| .++|++||||
T Consensus 3 ~~~~~Y~~~w~------~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~~~----~~~~~~~~~~~~k-~~~~~lkvli 71 (299)
T cd02879 3 IVKGGYWPAWS------EEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISPS----DESEFSTFTETVK-RKNPSVKTLL 71 (299)
T ss_pred eEEEEEECCCC------CCCChhHCCcccCCEEEEEEEEecCCCCEEeeccc----cHHHHHHHHHHHH-HhCCCCeEEE
Confidence 47899999998 36999999999999999999999987766654431 22333333 3455 6799999999
Q ss_pred EecCCCCCCCcchhhhccCHHHHHHHHHHHHHHhhhCCcceEEEEecCCCccCCcCCCCCcchhhhHHHHHHHHHHHhcc
Q psy4449 462 AIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDK 541 (2417)
Q Consensus 462 SiGGw~~s~g~~fs~~~s~~~~R~~fi~svv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~nf~~ll~eLR~~f~~ 541 (2417)
|||||+.++ ..|+.|++++++|++||+++++|+++|||||||||||||+ .++|++||+.||+|||++|+.
T Consensus 72 siGG~~~~s-~~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~---------~~~d~~n~~~ll~elr~~l~~ 141 (299)
T cd02879 72 SIGGGGSDS-SAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPS---------SQVEMENFGKLLEEWRAAVKD 141 (299)
T ss_pred EEeCCCCCC-chhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCC---------ChhHHHHHHHHHHHHHHHHHH
Confidence 999998643 6899999999999999999999999999999999999996 357999999999999999983
Q ss_pred -------CCcceEeeccchhhh----hhhcCCccccccccceEEEEeeccCCCCCC-CcCCCCCCCCCCCCCCCCCCHHH
Q psy4449 542 -------HDYSIAVGISGYKEI----LEVAYDFPALNDHVEFMSLMSYDYHGAWEG-ITGLVSPLNSRPGEPYPNYNINT 609 (2417)
Q Consensus 542 -------~~~~Lsvav~~~~~~----~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~-~tg~~sPL~~~~~~~~~~~~v~~ 609 (2417)
.+++|++++++.... ....||+++|.++|||||||+||+||+|+. .++|+||||..+ ..++++.
T Consensus 142 ~~~~~~~~~~~ls~av~~~~~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~----~~~~~~~ 217 (299)
T cd02879 142 EARSSGRPPLLLTAAVYFSPILFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPN----SNVSTDY 217 (299)
T ss_pred HhhccCCCcEEEEeecccchhhccccccccCCHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCC----CCCCHHH
Confidence 458999998765544 356799999999999999999999999986 578999999654 3479999
Q ss_pred HHHHHHHhCCCCCcEEEeecccceeeeeccCCCCCCCCcccCCCCCCcccCCccchhHHHHHHHHhcCcccccccccCCC
Q psy4449 610 ALKLIDELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLE 689 (2417)
Q Consensus 610 ~v~~~~~~G~p~~KLvlGvP~YGr~~~l~~~~~~g~~~~~~g~g~~g~~t~~~g~~~y~eic~~~~~~~w~~~~~~~~~~ 689 (2417)
+|++|+..|+|++|||||||||||+|++
T Consensus 218 ~v~~~~~~g~p~~KlvlGvp~YGr~~~~---------------------------------------------------- 245 (299)
T cd02879 218 GIKSWIKAGVPAKKLVLGLPLYGRAWTL---------------------------------------------------- 245 (299)
T ss_pred HHHHHHHcCCCHHHEEEEeccccccccc----------------------------------------------------
Confidence 9999999999999999999999999863
Q ss_pred cCccCccccccccCCCCCCCCCCCCCccccCCCchhhhhhhhhhccCceeEeeCCCCcceeEecCCEEEEcCCHHHHHHH
Q psy4449 690 PRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQGDQWVSYEDPTSLTEK 769 (2417)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~w~~~~d~~~~~pY~~~~~~~i~Ydd~~Si~~K 769 (2417)
||+.++.||++++++||+|||++||++|
T Consensus 246 ----------------------------------------------------~D~~~~~~y~~~~~~wi~ydd~~Si~~K 273 (299)
T cd02879 246 ----------------------------------------------------YDTTTVSSYVYAGTTWIGYDDVQSIAVK 273 (299)
T ss_pred ----------------------------------------------------cCCCcceEEEEECCEEEEeCCHHHHHHH
Confidence 2344567899999999999999999999
Q ss_pred HHHHHhcCCceEEeecccccccCC
Q psy4449 770 VKFIKSNGYAGIMAWTIDLDDFHN 793 (2417)
Q Consensus 770 ~~y~~~~gLgGv~iW~ld~DD~~~ 793 (2417)
++||+++||||+|+|+|++||++.
T Consensus 274 ~~~a~~~~lgGv~~W~l~~Dd~~~ 297 (299)
T cd02879 274 VKYAKQKGLLGYFAWAVGYDDNNW 297 (299)
T ss_pred HHHHHhCCCCeEEEEEeecCCccc
Confidence 999999999999999999999764
No 16
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=6.8e-54 Score=539.55 Aligned_cols=326 Identities=36% Similarity=0.763 Sum_probs=287.1
Q ss_pred eEEEEEeeccCCCCCCCCCCccccCCCCccEEEEEeEEecCCcceEecCCCCcccchhHHHHhhcCCcccCCCcEEEEEe
Q psy4449 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFYQRISSSPLVTHGKVKILIAI 463 (2417)
Q Consensus 384 ~vvcY~~~W~~~~~g~~~~~~~~i~~~~~THIiyaFa~~~~~~~~~~~~d~~~d~~~~~~~~~~~lk~~~~p~lKvllSi 463 (2417)
+|||||++|+.++ ..|.+++++.++||||+|+|+.+++++ .+...+.+.++ ..+..+..++ .++|++||||||
T Consensus 1 ~~~~Y~~~w~~~~---~~~~~~~~~~~~~thv~~~~~~~~~~g-~~~~~~~~~~~--~~~~~~~~l~-~~~~~~kvl~sv 73 (334)
T smart00636 1 RVVGYFTNWGVYG---RNFPVDDIPASKLTHIIYAFANIDPDG-TVTIGDEWADI--GNFGQLKALK-KKNPGLKVLLSI 73 (334)
T ss_pred CEEEEECchhccC---CCCChhHCCcccCcEEEEeeeeeCCCC-CEeeCCcchhh--hhHHHHHHHH-HhCCCCEEEEEE
Confidence 6899999999765 379999999999999999999999865 44444544432 2355577777 567999999999
Q ss_pred cCCCCCCCcchhhhccCHHHHHHHHHHHHHHhhhCCcceEEEEecCCCccCCcCCCCCcchhhhHHHHHHHHHHHhccC-
Q psy4449 464 GGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKH- 542 (2417)
Q Consensus 464 GGw~~s~g~~fs~~~s~~~~R~~fi~svv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~nf~~ll~eLR~~f~~~- 542 (2417)
|||..+ ..|+.++++++.|++||+++++++++|+|||||||||+|... ..|+++|..||++||++|++.
T Consensus 74 gg~~~s--~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~--------~~d~~~~~~ll~~lr~~l~~~~ 143 (334)
T smart00636 74 GGWTES--DNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGAR--------GDDRENYTALLKELREALDKEG 143 (334)
T ss_pred eCCCCC--cchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCC--------ccHHHHHHHHHHHHHHHHHHhc
Confidence 999875 679999999999999999999999999999999999999621 157889999999999999863
Q ss_pred ----CcceEeeccchhhhhhhcCC-ccccccccceEEEEeeccCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHh
Q psy4449 543 ----DYSIAVGISGYKEILEVAYD-FPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPNYNINTALKLIDEL 617 (2417)
Q Consensus 543 ----~~~Lsvav~~~~~~~~~~yd-~~~l~~~vD~i~vMtYD~~g~w~~~tg~~sPL~~~~~~~~~~~~v~~~v~~~~~~ 617 (2417)
+++|++++++........|+ +++|.+++|||+||+||+||+|+..+||+|||+..+.++ ..++++.+|+.|++.
T Consensus 144 ~~~~~~~lsi~v~~~~~~~~~~~~~~~~l~~~vD~v~vm~YD~~~~~~~~~g~~spl~~~~~~~-~~~~v~~~v~~~~~~ 222 (334)
T smart00636 144 AEGKGYLLTIAVPAGPDKIDKGYGDLPAIAKYLDFINLMTYDFHGAWSNPTGHNAPLYAGPGDP-EKYNVDYAVKYYLCK 222 (334)
T ss_pred ccCCceEEEEEecCChHHHHhhhhhHHHHHhhCcEEEEeeeccCCCCCCCCCCCCcCCCCCCCC-CCccHHHHHHHHHHc
Confidence 79999999886655555689 599999999999999999999999999999999877655 568999999999999
Q ss_pred CCCCCcEEEeecccceeeeeccCCCCCCCCcccCCCCCCcccCCccchhHHHHHHHHhcCcccccccccCCCcCccCccc
Q psy4449 618 GGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPRSMGTLK 697 (2417)
Q Consensus 618 G~p~~KLvlGvP~YGr~~~l~~~~~~g~~~~~~g~g~~g~~t~~~g~~~y~eic~~~~~~~w~~~~~~~~~~~~~~~~~~ 697 (2417)
|+|++||+||||||||.|++.....+++++++.|++.+|+++..+|.++|.|||+.+ +
T Consensus 223 gvp~~KlvlGip~YG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~---~------------------- 280 (334)
T smart00636 223 GVPPSKLVLGIPFYGRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLL---G------------------- 280 (334)
T ss_pred CCCHHHeEEeeccccCccccCCCCcCCCCCcccCCCCCCCCCCcccchhHHHHHhhc---C-------------------
Confidence 999999999999999999999988889999999999999999999999999999753 2
Q ss_pred cccccCCCCCCCCCCCCCccccCCCchhhhhhhhhhccCceeEeeCCCCcceeEec-C-CEEEEcCCHHHHHHHHHHHHh
Q psy4449 698 LDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQ-G-DQWVSYEDPTSLTEKVKFIKS 775 (2417)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~w~~~~d~~~~~pY~~~-~-~~~i~Ydd~~Si~~K~~y~~~ 775 (2417)
|...||+.+++||+|+ + ++||+|||++||+.|++||++
T Consensus 281 ----------------------------------------~~~~~d~~~~~~y~~~~~~~~~v~ydd~~Si~~K~~~~~~ 320 (334)
T smart00636 281 ----------------------------------------ATVVWDDTAKAPYAYNPGTGQWVSYDDPRSIKAKADYVKD 320 (334)
T ss_pred ----------------------------------------cEEEEcCCCceeEEEECCCCEEEEcCCHHHHHHHHHHHHh
Confidence 3478899999999998 4 499999999999999999999
Q ss_pred cCCceEEeeccccc
Q psy4449 776 NGYAGIMAWTIDLD 789 (2417)
Q Consensus 776 ~gLgGv~iW~ld~D 789 (2417)
+||||+|+|+|++|
T Consensus 321 ~~lgGv~iW~l~~D 334 (334)
T smart00636 321 KGLGGVMIWELDAD 334 (334)
T ss_pred CCCCeEEEEeecCC
Confidence 99999999999987
No 17
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=5.7e-48 Score=488.91 Aligned_cols=332 Identities=36% Similarity=0.773 Sum_probs=279.2
Q ss_pred CEEEEEEecCcccccCCCCCCCCCCCCCCccEEEEEeEEecCCCcEEcc--CCCcchhhHHHHHHHHHHH--hCCCEEEE
Q psy4449 1711 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKP--HDTWADLDNKFYEKVTALK--KKGVKVTL 1786 (2417)
Q Consensus 1711 ~~vvcY~~~W~~yr~~~~~~~~~~i~~~~cTHIiyaFa~i~~~~~~~~~--~d~~~d~~~~~~~~i~~lk--~~glKvll 1786 (2417)
++|||||++|+.+|++ .|.+++++.++||||+|+|+.++.++..... .....+.....++.++.+| ..|+||||
T Consensus 1 ~~vv~Y~~~~~~~~~~--~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvll 78 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPG--SYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNLKELKAKNPGVKVLL 78 (343)
T ss_dssp BEEEEEEEGGGGSSTG--CSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CEEEEEECCcCCCCCC--CCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHHHHHHhhccCceEEE
Confidence 5899999999988776 7889999999999999999999998866421 0111122334455555555 44999999
Q ss_pred EEcCCCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcchhhhHHHHHHHHHHhcCC
Q psy4449 1787 AIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNP 1866 (2417)
Q Consensus 1787 sIGGw~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~~~~~llkeLr~~l~~ 1866 (2417)
+||||..+. ..|+.++++++.|++||++|+++|++|||||||||||+|.. .+.+.++.+|..||++||++|++
T Consensus 79 sigg~~~~~-~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~------~~~~~~~~~~~~~l~~L~~~l~~ 151 (343)
T PF00704_consen 79 SIGGWGMSS-DGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSS------SGDPQDKDNYTAFLKELRKALKR 151 (343)
T ss_dssp EEEETTSSH-HHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTS------TSSTTHHHHHHHHHHHHHHHHHH
T ss_pred Eeccccccc-cccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccc------cccchhhhhhhhhhhhhhhhhcc
Confidence 999998752 48999999999999999999999999999999999999972 11267999999999999999988
Q ss_pred -----CCcEEEEEECCChhhhcccCCccccccCcceEEEEeccCCCCCCCCCCCCCcCCCCCCCCCCCccHHHHHHHHHH
Q psy4449 1867 -----HDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVS 1941 (2417)
Q Consensus 1867 -----~~~~Ls~av~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~aPLy~~~~~~~~~~nv~~~v~~~~~ 1941 (2417)
++++|++++++..... ..+++++|.++||||+||+||+|++|+..++|++||+....+ ...++++.++++|+.
T Consensus 152 ~~~~~~~~~ls~a~p~~~~~~-~~~~~~~l~~~vD~v~~m~yD~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~v~~~~~ 229 (343)
T PF00704_consen 152 ANRSGKGYILSVAVPPSPDYY-DKYDYKELAQYVDYVNLMTYDYHGPWSDVTGPNAPLYDSSWD-SNYYSVDSAVQYWIK 229 (343)
T ss_dssp HHHHHSTSEEEEEEECSHHHH-TTHHHHHHHTTSSEEEEETTSSSSTTSSBETTSSSSSHTTTS-GTSSSHHHHHHHHHH
T ss_pred cccccceeEEeeccccccccc-cccccccccccccccccccccCCCCcccccccccccccCCcc-CCCceeeeehhhhcc
Confidence 3899999998877654 345999999999999999999999999999999999975543 346789999999999
Q ss_pred cCCCCCcEeeeccccceeeEeccCCCCCCCCccccCCCCCCccccCccchHHHHHHhhhcCCcEEEEcCCCceeeEEeeC
Q psy4449 1942 HGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKG 2021 (2417)
Q Consensus 1942 ~G~p~~KLvlGiP~YG~~ftl~~~~~~~~~a~~~g~g~~g~~t~~~G~l~y~eic~~~~~~~~~~~~D~~~~~~py~~~~ 2021 (2417)
.|+|++||+||||+||+.|++.+...+....+.. ...+..+...|.+.|.|||..+++.++...||+.. ..+|.+.+
T Consensus 230 ~g~p~~Kl~lglp~yg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~y~~~~ 306 (343)
T PF00704_consen 230 AGVPPSKLVLGLPFYGRSWTLVNGSPNGPWGPAY--WSPGKGTKNAGILSYYELCALLKSNGYTVQWDDTA-QAPYAYND 306 (343)
T ss_dssp TTSTGGGEEEEEESEEEEEESSSSTTSTTTBBEE--SEETTTTSBTTEEEHHHHHHHTHHTTEEEEEETTT-TEEEEEET
T ss_pred ccCChhheeecCCcccccceecCCcCCCCCCccc--ccccccccCCCccccccchhhcccCCcceEEeecc-cceEEEec
Confidence 9999999999999999999998877666555443 35566788899999999999998899999999995 48999988
Q ss_pred --CEEEEeCCHHHHHHHHHHhhcCCcceEEEEeccCc
Q psy4449 2022 --DQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 2056 (2417)
Q Consensus 2022 --~~wv~Ydd~~Si~~K~~~~k~~gLgGvmiW~ld~D 2056 (2417)
++||+|||++||+.|++|++++||||+|+|+|++|
T Consensus 307 ~~~~~i~~e~~~Si~~K~~~v~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 307 DKKHWISYEDPRSIKAKMDYVKEKGLGGVAIWSLDQD 343 (343)
T ss_dssp TTTEEEEE--HHHHHHHHHHHHHTT-SEEEEETGGGS
T ss_pred CCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 79999999999999999999999999999999998
No 18
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=5.9e-48 Score=488.73 Aligned_cols=334 Identities=33% Similarity=0.705 Sum_probs=277.7
Q ss_pred CeEEEEEeeccCCCCCCCCCCccccCCCCccEEEEEeEEecCCcceEec--CCCCcccchhHHHHhhcCCcccCCCcEEE
Q psy4449 383 PKVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQA--GNPEADIDDNFYQRISSSPLVTHGKVKIL 460 (2417)
Q Consensus 383 ~~vvcY~~~W~~~~~g~~~~~~~~i~~~~~THIiyaFa~~~~~~~~~~~--~d~~~d~~~~~~~~~~~lk~~~~p~lKvl 460 (2417)
++|||||++|+.++.+ .|.+++|+.++||||+|+|+.++.++..... .....+.....++.+..++ .++|++|||
T Consensus 1 ~~vv~Y~~~~~~~~~~--~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kvl 77 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPG--SYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNLKELK-AKNPGVKVL 77 (343)
T ss_dssp BEEEEEEEGGGGSSTG--CSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHHHHHH-HHHTT-EEE
T ss_pred CEEEEEECCcCCCCCC--CCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHHHHHH-hhccCceEE
Confidence 5899999999988765 6889999999999999999999988755321 1112234456677777777 789999999
Q ss_pred EEecCCCCCCCcchhhhccCHHHHHHHHHHHHHHhhhCCcceEEEEecCCCccCCcCCCCCcchhhhHHHHHHHHHHHhc
Q psy4449 461 IAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFD 540 (2417)
Q Consensus 461 lSiGGw~~s~g~~fs~~~s~~~~R~~fi~svv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~nf~~ll~eLR~~f~ 540 (2417)
||||||..+. ..|+.++++++.|++||++++++|++|||||||||||+|...+ .+.++.+|..||++||++|+
T Consensus 78 lsigg~~~~~-~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~------~~~~~~~~~~~l~~L~~~l~ 150 (343)
T PF00704_consen 78 LSIGGWGMSS-DGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSG------DPQDKDNYTAFLKELRKALK 150 (343)
T ss_dssp EEEEETTSSH-HHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTS------STTHHHHHHHHHHHHHHHHH
T ss_pred EEeccccccc-cccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccccc------cchhhhhhhhhhhhhhhhhc
Confidence 9999998763 3799999999999999999999999999999999999996322 15689999999999999999
Q ss_pred cC-----CcceEeeccchhhhhhhcCCccccccccceEEEEeeccCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy4449 541 KH-----DYSIAVGISGYKEILEVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPNYNINTALKLID 615 (2417)
Q Consensus 541 ~~-----~~~Lsvav~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~sPL~~~~~~~~~~~~v~~~v~~~~ 615 (2417)
+. ++.|++++++...... .+++..|.+++|||+||+||+|++|+..++|++||+....+ ...++++.+|+.|+
T Consensus 151 ~~~~~~~~~~ls~a~p~~~~~~~-~~~~~~l~~~vD~v~~m~yD~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~v~~~~ 228 (343)
T PF00704_consen 151 RANRSGKGYILSVAVPPSPDYYD-KYDYKELAQYVDYVNLMTYDYHGPWSDVTGPNAPLYDSSWD-SNYYSVDSAVQYWI 228 (343)
T ss_dssp HHHHHHSTSEEEEEEECSHHHHT-THHHHHHHTTSSEEEEETTSSSSTTSSBETTSSSSSHTTTS-GTSSSHHHHHHHHH
T ss_pred ccccccceeEEeecccccccccc-ccccccccccccccccccccCCCCcccccccccccccCCcc-CCCceeeeehhhhc
Confidence 84 7999999877665443 34999999999999999999999999999999999876644 45689999999999
Q ss_pred HhCCCCCcEEEeecccceeeeeccCCCCCCCCcccCCCCCCcccCCccchhHHHHHHHHhcCcccccccccCCCcCccCc
Q psy4449 616 ELGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPRSMGT 695 (2417)
Q Consensus 616 ~~G~p~~KLvlGvP~YGr~~~l~~~~~~g~~~~~~g~g~~g~~t~~~g~~~y~eic~~~~~~~w~~~~~~~~~~~~~~~~ 695 (2417)
..|+|++||+||||+||+.|++.....++...++. +..+..+..+|.+.|.|||..++...
T Consensus 229 ~~g~p~~Kl~lglp~yg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 289 (343)
T PF00704_consen 229 KAGVPPSKLVLGLPFYGRSWTLVNGSPNGPWGPAY--WSPGKGTKNAGILSYYELCALLKSNG----------------- 289 (343)
T ss_dssp HTTSTGGGEEEEEESEEEEEESSSSTTSTTTBBEE--SEETTTTSBTTEEEHHHHHHHTHHTT-----------------
T ss_pred cccCChhheeecCCcccccceecCCcCCCCCCccc--ccccccccCCCccccccchhhcccCC-----------------
Confidence 99999999999999999999988876665544433 23455667788888888887664332
Q ss_pred cccccccCCCCCCCCCCCCCccccCCCchhhhhhhhhhccCceeEeeCCCCcceeEecC--CEEEEcCCHHHHHHHHHHH
Q psy4449 696 LKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFTFQG--DQWVSYEDPTSLTEKVKFI 773 (2417)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~w~~~~d~~~~~pY~~~~--~~~i~Ydd~~Si~~K~~y~ 773 (2417)
|...||+..++||.+.. ++||+|||++||++|++||
T Consensus 290 ------------------------------------------~~~~~d~~~~~~y~~~~~~~~~i~~e~~~Si~~K~~~v 327 (343)
T PF00704_consen 290 ------------------------------------------YTVQWDDTAQAPYAYNDDKKHWISYEDPRSIKAKMDYV 327 (343)
T ss_dssp ------------------------------------------EEEEEETTTTEEEEEETTTTEEEEE--HHHHHHHHHHH
T ss_pred ------------------------------------------cceEEeecccceEEEecCCCeEEEeCCHHHHHHHHHHH
Confidence 34788888999999998 7999999999999999999
Q ss_pred HhcCCceEEeeccccc
Q psy4449 774 KSNGYAGIMAWTIDLD 789 (2417)
Q Consensus 774 ~~~gLgGv~iW~ld~D 789 (2417)
+++||||+|+|+|++|
T Consensus 328 ~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 328 KEKGLGGVAIWSLDQD 343 (343)
T ss_dssp HHTT-SEEEEETGGGS
T ss_pred HhCCCCEEEEEecCCC
Confidence 9999999999999987
No 19
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=1.4e-47 Score=476.78 Aligned_cols=294 Identities=21% Similarity=0.350 Sum_probs=243.9
Q ss_pred EEEEEEecCcccccCCCCCCCCCCCCCCccEEEEEeEEecCCCcEEccCCCcchhhHHHHHHHHHHHhC--CCEEE--EE
Q psy4449 1712 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVT--LA 1787 (2417)
Q Consensus 1712 ~vvcY~~~W~~yr~~~~~~~~~~i~~~~cTHIiyaFa~i~~~~~~~~~~d~~~d~~~~~~~~i~~lk~~--glKvl--ls 1787 (2417)
+++|||++|+.+ .|.+.+++.++||||+|+|+.+++++..+...+. .+.+.. .+..+|++ ++||| |+
T Consensus 4 ~~~~y~~~W~~~-----~~~~~~~~~~~lthv~~~f~~i~~~g~~~~~~~~-~~~~~~---~~~~lk~~~~~lkvlp~i~ 74 (318)
T cd02876 4 PVLGYVTPWNSH-----GYDVAKKFAAKFTHVSPVWLQIKRKGNKFVIEGT-HDIDKG---WIEEVRKANKNIKILPRVL 74 (318)
T ss_pred ceEEEEcCcCcc-----chHHHHHHhccCCEecceEEEEecCCCeeeeecC-cchhhH---HHHHHHhhCCCcEEEeEEE
Confidence 489999999843 5788999999999999999999987754433221 233333 34556654 69999 77
Q ss_pred EcCCCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEe-ecCCCCccCCCCCCCcchhhhHHHHHHHHHHhcCC
Q psy4449 1788 IGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLD-WEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNP 1866 (2417)
Q Consensus 1788 IGGw~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiD-wEyP~~~~~~~~~~~~~d~~~~~~llkeLr~~l~~ 1866 (2417)
+|||+. ..|+.|+++++.|++||+++++|+++||||||||| ||||.. .+.++++++|+.||+|||++|++
T Consensus 75 ~gg~~~---~~f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~------~~~~~d~~~~~~~l~el~~~l~~ 145 (318)
T cd02876 75 FEGWSY---QDLQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAA------YGVPDKRKELIQLVIHLGETLHS 145 (318)
T ss_pred ECCCCH---HHHHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcc------cCCHHHHHHHHHHHHHHHHHHhh
Confidence 799975 35999999999999999999999999999999999 999962 12367999999999999999999
Q ss_pred CCcEEEEEECCChhh-----hcccCCccccccCcceEEEEeccCCCCCCCCCCCCCcCCCCCCCCCCCccHHHHHHHHHH
Q psy4449 1867 HDLLLSAAVSPSKAV-----IDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVS 1941 (2417)
Q Consensus 1867 ~~~~Ls~av~~~~~~-----~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~aPLy~~~~~~~~~~nv~~~v~~~~~ 1941 (2417)
++++|++++++.... ....||+++|++++|||+||+||+||. ..+||+|||++ ++.+|++|++
T Consensus 146 ~~~~l~~~v~~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~--~~~g~~apl~~----------v~~~v~~~~~ 213 (318)
T cd02876 146 ANLKLILVIPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSP--QRPGPNAPLSW----------VRSCLELLLP 213 (318)
T ss_pred cCCEEEEEEcCccccccccccccccCHHHHHhhccEEEEEeeccCCC--CCCCCCCCcHH----------HHHHHHHHHh
Confidence 999999999875432 334689999999999999999999997 78999999974 9999999999
Q ss_pred cC-CCCCcEeeeccccceeeEeccCCCCCCCCccccCCCCCCccccCccchHHHHHHhhhcCCcEEEEcCCCceeeEEee
Q psy4449 1942 HG-ADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK 2020 (2417)
Q Consensus 1942 ~G-~p~~KLvlGiP~YG~~ftl~~~~~~~~~a~~~g~g~~g~~t~~~G~l~y~eic~~~~~~~~~~~~D~~~~~~py~~~ 2020 (2417)
.| +|++|||||||||||.|++.+ .+. .+.+.++++.+++.++.+.||++.+..+|.|+
T Consensus 214 ~~~vp~~KlvlGip~YG~~w~~~~-----~~~----------------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~y~ 272 (318)
T cd02876 214 ESGKKRAKILLGLNFYGNDYTLPG-----GGG----------------AITGSEYLKLLKSNKPKLQWDEKSAEHFFEYK 272 (318)
T ss_pred cCCCCHHHeEEeccccccccccCC-----CCc----------------eeehHHHHHHHHhcCCCceeccCCCcceEEEe
Confidence 87 999999999999999998643 011 11223344444556789999999777789997
Q ss_pred C---CEEEEeCCHHHHHHHHHHhhcCCcceEEEEeccCcc
Q psy4449 2021 G---DQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDD 2057 (2417)
Q Consensus 2021 ~---~~wv~Ydd~~Si~~K~~~~k~~gLgGvmiW~ld~DD 2057 (2417)
+ ++||+|||++||+.|++|++++|| |+|+|+|++++
T Consensus 273 ~~~~~~~v~ydd~~Si~~K~~~a~~~~l-Gv~~W~lg~~~ 311 (318)
T cd02876 273 NKGGKHAVFYPTLKSIQLRLDLAKELGT-GISIWELGQGL 311 (318)
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHcCC-cEEEEcccCCc
Confidence 6 799999999999999999999999 99999999986
No 20
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=1.1e-44 Score=453.50 Aligned_cols=301 Identities=24% Similarity=0.374 Sum_probs=240.2
Q ss_pred CCCCCCCCEEEEEEecCcccccCCCCCCCCCCCCCCccEEEEEeEEecCCCcEEccCCCcchhhHHHHHHHHHHHhCCCE
Q psy4449 1704 PPSTKDEFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKGVK 1783 (2417)
Q Consensus 1704 ~~~~~~~~~vvcY~~~W~~yr~~~~~~~~~~i~~~~cTHIiyaFa~i~~~~~~~~~~d~~~d~~~~~~~~i~~lk~~glK 1783 (2417)
|....+.++|+||..+- ..-...|++.+|||... + +.+ .+.+..+|++|+|
T Consensus 29 p~~~~~~~~~~~~~~~~---------~~~~~~~~~~~tti~~~-------~----------~~~---~~~~~~A~~~~v~ 79 (358)
T cd02875 29 PIEIGPRFEFLVFSVNS---------TNYPNYDWSKVTTIAIF-------G----------DID---DELLCYAHSKGVR 79 (358)
T ss_pred CccCCCceEEEEEEeCC---------CcCcccccccceEEEec-------C----------CCC---HHHHHHHHHcCCE
Confidence 34455678999998652 22356788999999976 1 011 1456788999999
Q ss_pred EEEEEcCCCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcchhhhHHHHHHHHHHh
Q psy4449 1784 VTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAA 1863 (2417)
Q Consensus 1784 vllsIGGw~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~~~~~llkeLr~~ 1863 (2417)
|+++ |++. ..+++++++|++||+++++++++|||||||||||||.. ....++++|+.||+|||++
T Consensus 80 v~~~-~~~~-------~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~-------~~~~d~~~~t~llkelr~~ 144 (358)
T cd02875 80 LVLK-GDVP-------LEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPIT-------KGSPEYYALTELVKETTKA 144 (358)
T ss_pred EEEE-CccC-------HHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCC-------CCcchHHHHHHHHHHHHHH
Confidence 9987 3322 13588999999999999999999999999999999972 1357899999999999999
Q ss_pred cCCC--CcEEEEEECCChhhhcc-cCCccccccCcceEEEEeccCCCC-CCC--CCCCCCcCCCCCCCCCCCccHHHHHH
Q psy4449 1864 FNPH--DLLLSAAVSPSKAVIDN-AYDIPVMSENLDWISVMTYDYHGQ-WDK--KTGHVAPMYALPNDTTPTFNANYSLH 1937 (2417)
Q Consensus 1864 l~~~--~~~Ls~av~~~~~~~~~-~yd~~~l~~~vD~i~vMtYD~~g~-w~~--~tg~~aPLy~~~~~~~~~~nv~~~v~ 1937 (2417)
|++. +++|+++++..+..+.. .||+++|++++|||+||+||+|++ |+. .+|++||+. +++.+|+
T Consensus 145 l~~~~~~~~Lsvav~~~p~~~~~~~yd~~~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~----------~v~~~v~ 214 (358)
T cd02875 145 FKKENPGYQISFDVAWSPSCIDKRCYDYTGIADASDFLVVMDYDEQSQIWGKECIAGANSPYS----------QTLSGYN 214 (358)
T ss_pred HhhcCCCcEEEEEEecCcccccccccCHHHHHhhCCEeeEEeecccCCCCCCCCCCCCCCCch----------hHHHHHH
Confidence 9875 68999998865544444 499999999999999999999985 763 588899875 5899999
Q ss_pred HHHHcCCCCCcEeeeccccceeeEeccCC-CCC----CCCccccCCCCCCccc-cCccchHHHHHHhhhcCCcEEEEcCC
Q psy4449 1938 YWVSHGADRKKVIFGMPMYGQSFTLADKN-KNG----LNSQTYGGAEAGENTR-ARGFLAYYEICDKIQKDGWVVVRDRK 2011 (2417)
Q Consensus 1938 ~~~~~G~p~~KLvlGiP~YG~~ftl~~~~-~~~----~~a~~~g~g~~g~~t~-~~G~l~y~eic~~~~~~~~~~~~D~~ 2011 (2417)
+|+..|+|++|||||||+|||.|++.+.. +.. .+.+..|. +.+. ..+.++|.|||+.++..++.+.||++
T Consensus 215 ~~~~~gvp~~KLvLGip~YGr~w~~~~~~~~~~~~~~~~~p~~g~----~~~~~~g~~i~Y~ei~~~~~~~~~~~~wD~~ 290 (358)
T cd02875 215 NFTKLGIDPKKLVMGLPWYGYDYPCLNGNLEDVVCTIPKVPFRGA----NCSDAAGRQIPYSEIMKQINSSIGGRLWDSE 290 (358)
T ss_pred HHHHcCCCHHHeEEEeCCCCCceeCCCCcccCcccCCCCCCcCCC----CCcCCCCCccCHHHHHHHHhcCCCceeeccc
Confidence 99999999999999999999999976654 111 12222221 1122 23478999999998888899999999
Q ss_pred CceeeEE-eeC---C-EEEEeCCHHHHHHHHHHhhcCCcceEEEEeccCccccCcCC
Q psy4449 2012 RRIGPYA-FKG---D-QWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKNFCG 2063 (2417)
Q Consensus 2012 ~~~~py~-~~~---~-~wv~Ydd~~Si~~K~~~~k~~gLgGvmiW~ld~DDf~g~Cg 2063 (2417)
++ +||. |++ . +||+|||++||+.|++|++++||||+|+|+||+|||+|.|.
T Consensus 291 ~~-~py~~y~d~~g~~~~V~ydD~~Si~~K~~~a~~~gL~Gv~iW~ld~dD~~g~~~ 346 (358)
T cd02875 291 QK-SPFYNYKDKQGNLHQVWYDNPQSLSIKVAYAKNLGLKGIGMWNGDLLDYSGLPI 346 (358)
T ss_pred cc-cceEEEecCCCcEEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeccccccCCCch
Confidence 76 6765 543 2 79999999999999999999999999999999999999864
No 21
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=1.2e-45 Score=459.48 Aligned_cols=295 Identities=24% Similarity=0.416 Sum_probs=237.0
Q ss_pred eEEEEEeeccCCCCCCCCCCccccCCCCccEEEEEeEEecCCcceEecCCCCcccchhHHHHhhcCCcccCCCcEEE--E
Q psy4449 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFYQRISSSPLVTHGKVKIL--I 461 (2417)
Q Consensus 384 ~vvcY~~~W~~~~~g~~~~~~~~i~~~~~THIiyaFa~~~~~~~~~~~~d~~~d~~~~~~~~~~~lk~~~~p~lKvl--l 461 (2417)
+|+|||++|+.+ .+.+.+++.++||||+|+|+.+++++..+...+ ..+.+..+ +..+| .++|++||| |
T Consensus 4 ~~~~y~~~W~~~-----~~~~~~~~~~~lthv~~~f~~i~~~g~~~~~~~-~~~~~~~~---~~~lk-~~~~~lkvlp~i 73 (318)
T cd02876 4 PVLGYVTPWNSH-----GYDVAKKFAAKFTHVSPVWLQIKRKGNKFVIEG-THDIDKGW---IEEVR-KANKNIKILPRV 73 (318)
T ss_pred ceEEEEcCcCcc-----chHHHHHHhccCCEecceEEEEecCCCeeeeec-CcchhhHH---HHHHH-hhCCCcEEEeEE
Confidence 589999999754 478899999999999999999988765443322 12333333 34455 456899999 7
Q ss_pred EecCCCCCCCcchhhhccCHHHHHHHHHHHHHHhhhCCcceEEEE-ecCCCccCCcCCCCCcchhhhHHHHHHHHHHHhc
Q psy4449 462 AIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFD-WNYPVCWQADCSKQHKADKGNFVKLIQELKAEFD 540 (2417)
Q Consensus 462 SiGGw~~s~g~~fs~~~s~~~~R~~fi~svv~~l~~ygfDGiDiD-wEyP~~~~~~~~~~~~~d~~nf~~ll~eLR~~f~ 540 (2417)
++|||..+ .|+.++++++.|++||+++++|+++||||||||| ||||... +.++|+++|+.||+|||++|+
T Consensus 74 ~~gg~~~~---~f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~------~~~~d~~~~~~~l~el~~~l~ 144 (318)
T cd02876 74 LFEGWSYQ---DLQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAY------GVPDKRKELIQLVIHLGETLH 144 (318)
T ss_pred EECCCCHH---HHHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhccc------CCHHHHHHHHHHHHHHHHHHh
Confidence 88999753 5999999999999999999999999999999999 9999632 126799999999999999999
Q ss_pred cCCcceEeeccchhhh-----hhhcCCccccccccceEEEEeeccCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy4449 541 KHDYSIAVGISGYKEI-----LEVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPNYNINTALKLID 615 (2417)
Q Consensus 541 ~~~~~Lsvav~~~~~~-----~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~sPL~~~~~~~~~~~~v~~~v~~~~ 615 (2417)
+.++.|++++++.... ....||+++|++++|||+||+||+||. ..+||+|||+ +++.+|++|+
T Consensus 145 ~~~~~l~~~v~~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~--~~~g~~apl~----------~v~~~v~~~~ 212 (318)
T cd02876 145 SANLKLILVIPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSP--QRPGPNAPLS----------WVRSCLELLL 212 (318)
T ss_pred hcCCEEEEEEcCccccccccccccccCHHHHHhhccEEEEEeeccCCC--CCCCCCCCcH----------HHHHHHHHHH
Confidence 8888888877654321 234689999999999999999999998 7899999995 7999999999
Q ss_pred HhC-CCCCcEEEeecccceeeeeccCCCCCCCCcccCCCCCCcccCCccchhHHHHHHHHhcCcccccccccCCCcCccC
Q psy4449 616 ELG-GDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPRSMG 694 (2417)
Q Consensus 616 ~~G-~p~~KLvlGvP~YGr~~~l~~~~~~g~~~~~~g~g~~g~~t~~~g~~~y~eic~~~~~~~w~~~~~~~~~~~~~~~ 694 (2417)
..| +|++|||||||||||.|++.. .+.+ .+ | ..|.++|.. .
T Consensus 213 ~~~~vp~~KlvlGip~YG~~w~~~~-----~~~~---------~~---~-~~~~~~~~~---~----------------- 254 (318)
T cd02876 213 PESGKKRAKILLGLNFYGNDYTLPG-----GGGA---------IT---G-SEYLKLLKS---N----------------- 254 (318)
T ss_pred hcCCCCHHHeEEeccccccccccCC-----CCce---------ee---h-HHHHHHHHh---c-----------------
Confidence 997 999999999999999998643 0111 11 1 234454431 1
Q ss_pred ccccccccCCCCCCCCCCCCCccccCCCchhhhhhhhhhccCceeEeeCCCCc-ceeEecC---CEEEEcCCHHHHHHHH
Q psy4449 695 TLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSL-EPFTFQG---DQWVSYEDPTSLTEKV 770 (2417)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~w~~~~d~~~~-~pY~~~~---~~~i~Ydd~~Si~~K~ 770 (2417)
.+...||+.++ .+|.|++ ++||+|||++||+.|+
T Consensus 255 ------------------------------------------~~~~~~d~~~~~~~~~y~~~~~~~~v~ydd~~Si~~K~ 292 (318)
T cd02876 255 ------------------------------------------KPKLQWDEKSAEHFFEYKNKGGKHAVFYPTLKSIQLRL 292 (318)
T ss_pred ------------------------------------------CCCceeccCCCcceEEEecCCCcEEEEeCCHHHHHHHH
Confidence 12367888854 5578865 6999999999999999
Q ss_pred HHHHhcCCceEEeecccccc
Q psy4449 771 KFIKSNGYAGIMAWTIDLDD 790 (2417)
Q Consensus 771 ~y~~~~gLgGv~iW~ld~DD 790 (2417)
+||+++|| |+|+|+|++++
T Consensus 293 ~~a~~~~l-Gv~~W~lg~~~ 311 (318)
T cd02876 293 DLAKELGT-GISIWELGQGL 311 (318)
T ss_pred HHHHHcCC-cEEEEcccCCc
Confidence 99999999 99999999986
No 22
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=9.6e-44 Score=442.44 Aligned_cols=295 Identities=23% Similarity=0.395 Sum_probs=243.5
Q ss_pred EEEEEEecCcccccCCCCCCCCCCCCCCccEEEEEeEEecCCCcEEccCCCcchhhHHHHHHHHHHHhCCCEEEEEEcCC
Q psy4449 1712 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKGVKVTLAIGGW 1791 (2417)
Q Consensus 1712 ~vvcY~~~W~~yr~~~~~~~~~~i~~~~cTHIiyaFa~i~~~~~~~~~~d~~~d~~~~~~~~i~~lk~~glKvllsIGGw 1791 (2417)
+|+|||++|... .|....-..+++|||++.++.+++++.. ... . ..+.+..+|++++|||++||||
T Consensus 3 ~~~g~~~~~~~~-----~~~~~~~~~~~lt~v~p~w~~~~~~g~~-~~~---~-----~~~~~~~a~~~~~kv~~~i~~~ 68 (313)
T cd02874 3 EVLGYYTPRNGS-----DYESLRANAPYLTYIAPFWYGVDADGTL-TGL---P-----DERLIEAAKRRGVKPLLVITNL 68 (313)
T ss_pred eEEEEEecCCCc-----hHHHHHHhcCCCCEEEEEEEEEcCCCCC-CCC---C-----CHHHHHHHHHCCCeEEEEEecC
Confidence 589999999732 1222233457899999999999988752 211 1 1245677888899999999999
Q ss_pred CCC--CCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcchhhhHHHHHHHHHHhcCCCCc
Q psy4449 1792 NDS--AGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDL 1869 (2417)
Q Consensus 1792 ~~s--~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~~~~~llkeLr~~l~~~~~ 1869 (2417)
..+ .+..|+.++++++.|++||+++++|+++|||||||||||||. .+++++|+.||++||++|+++++
T Consensus 69 ~~~~~~~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~----------~~d~~~~~~fl~~lr~~l~~~~~ 138 (313)
T cd02874 69 TNGNFDSELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVP----------PEDREAYTQFLRELSDRLHPAGY 138 (313)
T ss_pred CCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCC----------HHHHHHHHHHHHHHHHHhhhcCc
Confidence 731 246799999999999999999999999999999999999874 57899999999999999998899
Q ss_pred EEEEEECCChh-----hhcccCCccccccCcceEEEEeccCCCCCCCCCCCCCcCCCCCCCCCCCccHHHHHHHHHHcCC
Q psy4449 1870 LLSAAVSPSKA-----VIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGA 1944 (2417)
Q Consensus 1870 ~Ls~av~~~~~-----~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~aPLy~~~~~~~~~~nv~~~v~~~~~~G~ 1944 (2417)
+|+++++|... .+...||+++|++++|+|+||+||+||.|. .+||+||+.+ ++..+++++ .|+
T Consensus 139 ~lsv~~~p~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~YD~~~~~~-~~gp~a~~~~----------~~~~~~~~~-~gv 206 (313)
T cd02874 139 TLSTAVVPKTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRGG-PPGPVAPIGW----------VERVLQYAV-TQI 206 (313)
T ss_pred EEEEEecCccccccccccccccCHHHHHhhCCEEEEEEeccCCCCC-CCCccCChHH----------HHHHHHHHH-hcC
Confidence 99998876532 223678999999999999999999999874 6899999863 777888776 889
Q ss_pred CCCcEeeeccccceeeEeccCCCCCCCCccccCCCCCCccccCccchHHHHHHhhhcCCcEEEEcCCCceeeEEeeC---
Q psy4449 1945 DRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKG--- 2021 (2417)
Q Consensus 1945 p~~KLvlGiP~YG~~ftl~~~~~~~~~a~~~g~g~~g~~t~~~G~l~y~eic~~~~~~~~~~~~D~~~~~~py~~~~--- 2021 (2417)
|++||+||||+|||.|++.+.. . ...+.++|.|+|+.+.+.++.+.||+..+...|.|.+
T Consensus 207 p~~KlvlGip~YG~~w~~~~~~----------~-------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~y~~~~g 269 (313)
T cd02874 207 PREKILLGIPLYGYDWTLPYKK----------G-------GKASTISPQQAINLAKRYGAEIQYDEEAQSPFFRYVDEQG 269 (313)
T ss_pred CHHHEEEeecccccccccCCCC----------C-------cCccccCHHHHHHHHHHcCCCeEECcccCCCcEEEEeCCC
Confidence 9999999999999999875411 0 1235688999999999999999999997743345643
Q ss_pred -CEEEEeCCHHHHHHHHHHhhcCCcceEEEEeccCcccc
Q psy4449 2022 -DQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFK 2059 (2417)
Q Consensus 2022 -~~wv~Ydd~~Si~~K~~~~k~~gLgGvmiW~ld~DDf~ 2059 (2417)
.+||+|||++||+.|++|++++||||+|+|+|++||..
T Consensus 270 ~~~~v~y~d~~Si~~K~~~~~~~~lgGv~iW~lg~dD~~ 308 (313)
T cd02874 270 RRHEVWFEDARSLQAKFELAKEYGLRGVSYWRLGLEDPQ 308 (313)
T ss_pred CEEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCCcc
Confidence 47999999999999999999999999999999999954
No 23
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=7.9e-43 Score=436.93 Aligned_cols=297 Identities=24% Similarity=0.411 Sum_probs=230.4
Q ss_pred CCCCeEEEEEeeccCCCCCCCCCCccccCCCCccEEEEEeEEecCCcceEecCCCCcccchhHHHHhhcCCcccCCCcEE
Q psy4449 380 EPEPKVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFYQRISSSPLVTHGKVKI 459 (2417)
Q Consensus 380 ~~~~~vvcY~~~W~~~~~g~~~~~~~~i~~~~~THIiyaFa~~~~~~~~~~~~d~~~d~~~~~~~~~~~lk~~~~p~lKv 459 (2417)
.+.++|+||...- ..-...|++++|||.+. + +.+.++... .+..|+||
T Consensus 33 ~~~~~~~~~~~~~---------~~~~~~~~~~~tti~~~-------~----------~~~~~~~~~------A~~~~v~v 80 (358)
T cd02875 33 GPRFEFLVFSVNS---------TNYPNYDWSKVTTIAIF-------G----------DIDDELLCY------AHSKGVRL 80 (358)
T ss_pred CCceEEEEEEeCC---------CcCcccccccceEEEec-------C----------CCCHHHHHH------HHHcCCEE
Confidence 4678999998642 23357899999999876 1 112233221 34668999
Q ss_pred EEEecCCCCCCCcchhhhccCHHHHHHHHHHHHHHhhhCCcceEEEEecCCCccCCcCCCCCcchhhhHHHHHHHHHHHh
Q psy4449 460 LIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEF 539 (2417)
Q Consensus 460 llSiGGw~~s~g~~fs~~~s~~~~R~~fi~svv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~nf~~ll~eLR~~f 539 (2417)
+++ |+.. ..+++++++|++||+++++++++|||||||||||||+.. .+.|+++|+.||+|||++|
T Consensus 81 ~~~-~~~~-------~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~-------~~~d~~~~t~llkelr~~l 145 (358)
T cd02875 81 VLK-GDVP-------LEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITK-------GSPEYYALTELVKETTKAF 145 (358)
T ss_pred EEE-CccC-------HHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCC-------CcchHHHHHHHHHHHHHHH
Confidence 987 3321 235889999999999999999999999999999999632 2468999999999999999
Q ss_pred ccC--CcceEeeccchhhhhhh-cCCccccccccceEEEEeeccCCC-CCC--CcCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy4449 540 DKH--DYSIAVGISGYKEILEV-AYDFPALNDHVEFMSLMSYDYHGA-WEG--ITGLVSPLNSRPGEPYPNYNINTALKL 613 (2417)
Q Consensus 540 ~~~--~~~Lsvav~~~~~~~~~-~yd~~~l~~~vD~i~vMtYD~~g~-w~~--~tg~~sPL~~~~~~~~~~~~v~~~v~~ 613 (2417)
++. +++|+++++..+..... .||+++|++++|||+||+||+|++ |+. .+|++||+. +++.+|+.
T Consensus 146 ~~~~~~~~Lsvav~~~p~~~~~~~yd~~~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~----------~v~~~v~~ 215 (358)
T cd02875 146 KKENPGYQISFDVAWSPSCIDKRCYDYTGIADASDFLVVMDYDEQSQIWGKECIAGANSPYS----------QTLSGYNN 215 (358)
T ss_pred hhcCCCcEEEEEEecCcccccccccCHHHHHhhCCEeeEEeecccCCCCCCCCCCCCCCCch----------hHHHHHHH
Confidence 986 48899988755444333 499999999999999999999985 763 588899873 78999999
Q ss_pred HHHhCCCCCcEEEeecccceeeeeccCCCCC-----CCCcccCCCCCCcccC-CccchhHHHHHHHHhcCcccccccccC
Q psy4449 614 IDELGGDKRKIVIGVPFYGQSYTLKLDKEHG-----LGAETDGPGLAGEYTQ-QPGMLAYYEICYRIKTRKWTVQRNTKS 687 (2417)
Q Consensus 614 ~~~~G~p~~KLvlGvP~YGr~~~l~~~~~~g-----~~~~~~g~g~~g~~t~-~~g~~~y~eic~~~~~~~w~~~~~~~~ 687 (2417)
|+..|+|++|||||||||||.|++.+..... .+.+..| .+++. ..+.++|.|||++++..+
T Consensus 216 ~~~~gvp~~KLvLGip~YGr~w~~~~~~~~~~~~~~~~~p~~g----~~~~~~~g~~i~Y~ei~~~~~~~~--------- 282 (358)
T cd02875 216 FTKLGIDPKKLVMGLPWYGYDYPCLNGNLEDVVCTIPKVPFRG----ANCSDAAGRQIPYSEIMKQINSSI--------- 282 (358)
T ss_pred HHHcCCCHHHeEEEeCCCCCceeCCCCcccCcccCCCCCCcCC----CCCcCCCCCccCHHHHHHHHhcCC---------
Confidence 9999999999999999999999976543111 1122222 12222 234678888887664322
Q ss_pred CCcCccCccccccccCCCCCCCCCCCCCccccCCCchhhhhhhhhhccCceeEeeCCCCcceeE-ec---CC-EEEEcCC
Q psy4449 688 LEPRSMGTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFT-FQ---GD-QWVSYED 762 (2417)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~w~~~~d~~~~~pY~-~~---~~-~~i~Ydd 762 (2417)
|...||+.+++||. |. +. +||+|||
T Consensus 283 --------------------------------------------------~~~~wD~~~~~py~~y~d~~g~~~~V~ydD 312 (358)
T cd02875 283 --------------------------------------------------GGRLWDSEQKSPFYNYKDKQGNLHQVWYDN 312 (358)
T ss_pred --------------------------------------------------CceeeccccccceEEEecCCCcEEEEEeCC
Confidence 23678999999986 43 22 7999999
Q ss_pred HHHHHHHHHHHHhcCCceEEeecccccccCCccC
Q psy4449 763 PTSLTEKVKFIKSNGYAGIMAWTIDLDDFHNKCC 796 (2417)
Q Consensus 763 ~~Si~~K~~y~~~~gLgGv~iW~ld~DD~~~~c~ 796 (2417)
++||+.|++||+++||||+|+|+||+|||++.|.
T Consensus 313 ~~Si~~K~~~a~~~gL~Gv~iW~ld~dD~~g~~~ 346 (358)
T cd02875 313 PQSLSIKVAYAKNLGLKGIGMWNGDLLDYSGLPI 346 (358)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccccCCCch
Confidence 9999999999999999999999999999999754
No 24
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=3.9e-41 Score=405.54 Aligned_cols=251 Identities=28% Similarity=0.499 Sum_probs=213.2
Q ss_pred EEEEEecCcccccCCCCCCCCCCCCCCccEEEEEeEEecCCCcEEccCCCcchhhHHHHHHHHHHHhCCCEEEEEEcCCC
Q psy4449 1713 IVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKGVKVTLAIGGWN 1792 (2417)
Q Consensus 1713 vvcY~~~W~~yr~~~~~~~~~~i~~~~cTHIiyaFa~i~~~~~~~~~~d~~~d~~~~~~~~i~~lk~~glKvllsIGGw~ 1792 (2417)
|||||++|+.+. ..+++++.++||||+|+|+.++.+|.+... +. ...+...++.+|++|+|||++||||.
T Consensus 1 vigyy~~w~~~~-----~~~~~~~~~~lThv~~~f~~i~~~G~l~~~-~~----~~~~~~~~~~~~~~~~kvl~sigg~~ 70 (253)
T cd06545 1 VVGYLPNYDDLN-----ALSPTIDFSKLTHINLAFANPDANGTLNAN-PV----RSELNSVVNAAHAHNVKILISLAGGS 70 (253)
T ss_pred CEEEeCCccccc-----CCcccCChhhCCeEEEEEEEECCCCeEEec-Cc----HHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 689999998652 368999999999999999999988765432 22 12345667788888999999999987
Q ss_pred CCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcchhhhHHHHHHHHHHhcCCCCcEEE
Q psy4449 1793 DSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLS 1872 (2417)
Q Consensus 1793 ~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~~~~~llkeLr~~l~~~~~~Ls 1872 (2417)
.+ .|+.++++++.|++||+++++++++|+|||||||||||.. ++++|+.||++||++|++.+++|+
T Consensus 71 ~~---~~~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~-----------~~~~~~~fv~~Lr~~l~~~~~~lt 136 (253)
T cd06545 71 PP---EFTAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDV-----------TFGDYLVFIRALYAALKKEGKLLT 136 (253)
T ss_pred CC---cchhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCc-----------cHhHHHHHHHHHHHHHhhcCcEEE
Confidence 54 3778999999999999999999999999999999999861 278999999999999998899999
Q ss_pred EEECCChhhhcccCCccccccCcceEEEEeccCCCCCCC-CCCCCCcCCCCCCCCCCCccHHHHHHHHHHcCC-CCCcEe
Q psy4449 1873 AAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDK-KTGHVAPMYALPNDTTPTFNANYSLHYWVSHGA-DRKKVI 1950 (2417)
Q Consensus 1873 ~av~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~-~tg~~aPLy~~~~~~~~~~nv~~~v~~~~~~G~-p~~KLv 1950 (2417)
+++++... .+...++.+++|||+||+||+||+|.. .+||++|+. +++..|++|+..|+ |++||+
T Consensus 137 ~av~~~~~----~~~~~~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~----------~~~~~v~~~~~~g~ip~~Klv 202 (253)
T cd06545 137 AAVSSWNG----GAVSDSTLAYFDFINIMSYDATGPWWGDNPGQHSSYD----------DAVNDLNYWNERGLASKDKLV 202 (253)
T ss_pred EEccCccc----ccccHHHHhhCCEEEEEcCcCCCCCCCCCCCCCCchH----------hHHHHHHHHHHcCCCCHHHEE
Confidence 99876432 223456789999999999999999964 688999875 37889999999998 999999
Q ss_pred eeccccceeeEeccCCCCCCCCccccCCCCCCccccCccchHHHHHHhhhcCCcEEEEcCCCceeeEEeeCCEEEEeCCH
Q psy4449 1951 FGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKGDQWVGFDDQ 2030 (2417)
Q Consensus 1951 lGiP~YG~~ftl~~~~~~~~~a~~~g~g~~g~~t~~~G~l~y~eic~~~~~~~~~~~~D~~~~~~py~~~~~~wv~Ydd~ 2030 (2417)
||||+|||.| +|+.+
T Consensus 203 lGlp~YG~~w-----------------------------------------------------------------~~~~~ 217 (253)
T cd06545 203 LGLPFYGYGF-----------------------------------------------------------------YYNGI 217 (253)
T ss_pred EEeCCccccc-----------------------------------------------------------------cCCCH
Confidence 9999999987 36777
Q ss_pred HHHHHHHHHhhcCCcceEEEEeccCccccCcCCCCCchHHHHH
Q psy4449 2031 AMIHHKAEFVKYNDLGGAMIWALDLDDFKNFCGCESYPLLKTI 2073 (2417)
Q Consensus 2031 ~Si~~K~~~~k~~gLgGvmiW~ld~DDf~g~Cg~~~~pLl~ai 2073 (2417)
.+++.|+++++++ |||+|+|++++|.. ..+.||.+|
T Consensus 218 ~~~~~~~~~~~~~-~gG~~~w~~~~d~~------~~~~l~~~~ 253 (253)
T cd06545 218 PTIRNKVAFAKQN-YGGVMIWELSQDAS------GENSLLNAI 253 (253)
T ss_pred HHHHHHHHHHHHh-cCeEEEEeccCCCC------CCcchhhcC
Confidence 8899999999999 99999999999984 346788775
No 25
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=1e-40 Score=415.34 Aligned_cols=293 Identities=23% Similarity=0.426 Sum_probs=231.0
Q ss_pred eEEEEEeeccCCCCCCCCCCccccCCCCccEEEEEeEEecCCcceEecCCCCcccchhHHHHhhcCCcccCCCcEEEEEe
Q psy4449 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFYQRISSSPLVTHGKVKILIAI 463 (2417)
Q Consensus 384 ~vvcY~~~W~~~~~g~~~~~~~~i~~~~~THIiyaFa~~~~~~~~~~~~d~~~d~~~~~~~~~~~lk~~~~p~lKvllSi 463 (2417)
+|+|||++|.... +..-.-..+++|||++.++.+.+++. +.. . ....+ +..++ ..++|||++|
T Consensus 3 ~~~g~~~~~~~~~-----~~~~~~~~~~lt~v~p~w~~~~~~g~-~~~---~--~~~~~---~~~a~---~~~~kv~~~i 65 (313)
T cd02874 3 EVLGYYTPRNGSD-----YESLRANAPYLTYIAPFWYGVDADGT-LTG---L--PDERL---IEAAK---RRGVKPLLVI 65 (313)
T ss_pred eEEEEEecCCCch-----HHHHHHhcCCCCEEEEEEEEEcCCCC-CCC---C--CCHHH---HHHHH---HCCCeEEEEE
Confidence 6899999998642 11112234689999999999988763 211 1 11222 22222 3489999999
Q ss_pred cCCCCC--CCcchhhhccCHHHHHHHHHHHHHHhhhCCcceEEEEecCCCccCCcCCCCCcchhhhHHHHHHHHHHHhcc
Q psy4449 464 GGWTDS--SGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDK 541 (2417)
Q Consensus 464 GGw~~s--~g~~fs~~~s~~~~R~~fi~svv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~nf~~ll~eLR~~f~~ 541 (2417)
|||... ....|+.++++++.|++||+++++|+++|||||||||||+|. .+|+++|+.||++||++|++
T Consensus 66 ~~~~~~~~~~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~----------~~d~~~~~~fl~~lr~~l~~ 135 (313)
T cd02874 66 TNLTNGNFDSELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVP----------PEDREAYTQFLRELSDRLHP 135 (313)
T ss_pred ecCCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCC----------HHHHHHHHHHHHHHHHHhhh
Confidence 999721 125789999999999999999999999999999999999984 57899999999999999998
Q ss_pred CCcceEeeccchhh-----hhhhcCCccccccccceEEEEeeccCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy4449 542 HDYSIAVGISGYKE-----ILEVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPNYNINTALKLIDE 616 (2417)
Q Consensus 542 ~~~~Lsvav~~~~~-----~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~sPL~~~~~~~~~~~~v~~~v~~~~~ 616 (2417)
.+++|++++++... .+...||+++|++++|||+||+||+||.|. .+||+|||. .++..+++++
T Consensus 136 ~~~~lsv~~~p~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~YD~~~~~~-~~gp~a~~~----------~~~~~~~~~~- 203 (313)
T cd02874 136 AGYTLSTAVVPKTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRGG-PPGPVAPIG----------WVERVLQYAV- 203 (313)
T ss_pred cCcEEEEEecCccccccccccccccCHHHHHhhCCEEEEEEeccCCCCC-CCCccCChH----------HHHHHHHHHH-
Confidence 88888887655422 123578999999999999999999999974 688999883 5778887766
Q ss_pred hCCCCCcEEEeecccceeeeeccCCCCCCCCcccCCCCCCcccCCccchhHHHHHHHHhcCcccccccccCCCcCccCcc
Q psy4449 617 LGGDKRKIVIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPRSMGTL 696 (2417)
Q Consensus 617 ~G~p~~KLvlGvP~YGr~~~l~~~~~~g~~~~~~g~g~~g~~t~~~g~~~y~eic~~~~~~~w~~~~~~~~~~~~~~~~~ 696 (2417)
.|+|++||+||||||||.|++.+.. + ..++.++|.|+|++++..++
T Consensus 204 ~gvp~~KlvlGip~YG~~w~~~~~~-----------~------~~~~~~~~~~~~~~~~~~~~----------------- 249 (313)
T cd02874 204 TQIPREKILLGIPLYGYDWTLPYKK-----------G------GKASTISPQQAINLAKRYGA----------------- 249 (313)
T ss_pred hcCCHHHEEEeecccccccccCCCC-----------C------cCccccCHHHHHHHHHHcCC-----------------
Confidence 8999999999999999999865310 0 12356778888877654333
Q ss_pred ccccccCCCCCCCCCCCCCccccCCCchhhhhhhhhhccCceeEeeCCCCcceeE-ec---C-CEEEEcCCHHHHHHHHH
Q psy4449 697 KLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPFT-FQ---G-DQWVSYEDPTSLTEKVK 771 (2417)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~w~~~~d~~~~~pY~-~~---~-~~~i~Ydd~~Si~~K~~ 771 (2417)
...||+.+++||. |. + .+||+|||++||+.|++
T Consensus 250 ------------------------------------------~~~~d~~~~~~~~~y~~~~g~~~~v~y~d~~Si~~K~~ 287 (313)
T cd02874 250 ------------------------------------------EIQYDEEAQSPFFRYVDEQGRRHEVWFEDARSLQAKFE 287 (313)
T ss_pred ------------------------------------------CeEECcccCCCcEEEEeCCCCEEEEEeCcHHHHHHHHH
Confidence 3778999998875 43 2 37999999999999999
Q ss_pred HHHhcCCceEEeeccccccc
Q psy4449 772 FIKSNGYAGIMAWTIDLDDF 791 (2417)
Q Consensus 772 y~~~~gLgGv~iW~ld~DD~ 791 (2417)
|++++||||+|+|+|++||.
T Consensus 288 ~~~~~~lgGv~iW~lg~dD~ 307 (313)
T cd02874 288 LAKEYGLRGVSYWRLGLEDP 307 (313)
T ss_pred HHHHcCCCeEEEEECCCCCc
Confidence 99999999999999999995
No 26
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=9.2e-40 Score=393.65 Aligned_cols=210 Identities=25% Similarity=0.475 Sum_probs=173.0
Q ss_pred EEEEEeeccCCCCCCCCCCccccCCCCccEEEEEeEEecCCcceEecCCCCcccchhHHHHhhcCCcccCCCcEEEEEec
Q psy4449 385 VVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFYQRISSSPLVTHGKVKILIAIG 464 (2417)
Q Consensus 385 vvcY~~~W~~~~~g~~~~~~~~i~~~~~THIiyaFa~~~~~~~~~~~~d~~~d~~~~~~~~~~~lk~~~~p~lKvllSiG 464 (2417)
|||||++|..+. ..+++|+..+||||+|+|+.++.++.. ...+.. ..+...+..+| .+++|||+|||
T Consensus 1 vigyy~~w~~~~-----~~~~~~~~~~lThv~~~f~~i~~~G~l-~~~~~~----~~~~~~~~~~~---~~~~kvl~sig 67 (253)
T cd06545 1 VVGYLPNYDDLN-----ALSPTIDFSKLTHINLAFANPDANGTL-NANPVR----SELNSVVNAAH---AHNVKILISLA 67 (253)
T ss_pred CEEEeCCccccc-----CCcccCChhhCCeEEEEEEEECCCCeE-EecCcH----HHHHHHHHHHH---hCCCEEEEEEc
Confidence 699999998653 378999999999999999999988643 332211 12222333333 46899999999
Q ss_pred CCCCCCCcchhhhccCHHHHHHHHHHHHHHhhhCCcceEEEEecCCCccCCcCCCCCcchhhhHHHHHHHHHHHhccCCc
Q psy4449 465 GWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKHDY 544 (2417)
Q Consensus 465 Gw~~s~g~~fs~~~s~~~~R~~fi~svv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~nf~~ll~eLR~~f~~~~~ 544 (2417)
||..+ .|+.+++++++|++||+++++++++|+|||||||||||.. ++++|..||++||++|++.++
T Consensus 68 g~~~~---~~~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~-----------~~~~~~~fv~~Lr~~l~~~~~ 133 (253)
T cd06545 68 GGSPP---EFTAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDV-----------TFGDYLVFIRALYAALKKEGK 133 (253)
T ss_pred CCCCC---cchhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCc-----------cHhHHHHHHHHHHHHHhhcCc
Confidence 99754 3778999999999999999999999999999999999951 178999999999999998889
Q ss_pred ceEeeccchhhhhhhcCCccccccccceEEEEeeccCCCCCC-CcCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCC-CCC
Q psy4449 545 SIAVGISGYKEILEVAYDFPALNDHVEFMSLMSYDYHGAWEG-ITGLVSPLNSRPGEPYPNYNINTALKLIDELGG-DKR 622 (2417)
Q Consensus 545 ~Lsvav~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~-~tg~~sPL~~~~~~~~~~~~v~~~v~~~~~~G~-p~~ 622 (2417)
+|++++++... .+...++.+++|||+||+||+||+|.. .+||+||+. +++..|++|+..|+ |++
T Consensus 134 ~lt~av~~~~~----~~~~~~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~----------~~~~~v~~~~~~g~ip~~ 199 (253)
T cd06545 134 LLTAAVSSWNG----GAVSDSTLAYFDFINIMSYDATGPWWGDNPGQHSSYD----------DAVNDLNYWNERGLASKD 199 (253)
T ss_pred EEEEEccCccc----ccccHHHHhhCCEEEEEcCcCCCCCCCCCCCCCCchH----------hHHHHHHHHHHcCCCCHH
Confidence 99999876432 123456788999999999999999964 588888873 68999999999998 999
Q ss_pred cEEEeecccceee
Q psy4449 623 KIVIGVPFYGQSY 635 (2417)
Q Consensus 623 KLvlGvP~YGr~~ 635 (2417)
||+||||||||.|
T Consensus 200 KlvlGlp~YG~~w 212 (253)
T cd06545 200 KLVLGLPFYGYGF 212 (253)
T ss_pred HEEEEeCCccccc
Confidence 9999999999766
No 27
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=100.00 E-value=1e-38 Score=392.41 Aligned_cols=288 Identities=20% Similarity=0.263 Sum_probs=223.3
Q ss_pred EEEEEecCcccccCCCCCCCCCCCCCCccEEEEEeEEecCCCcEEccCCCcchhhHHHHHHHHHHHhCC--CEEEEEEcC
Q psy4449 1713 IVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKG--VKVTLAIGG 1790 (2417)
Q Consensus 1713 vvcY~~~W~~yr~~~~~~~~~~i~~~~cTHIiyaFa~i~~~~~~~~~~d~~~d~~~~~~~~i~~lk~~g--lKvllsIGG 1790 (2417)
++|||++|. ...+..-......+|||+..|+.+...++.+.. ..+......+.++|+++ ++++..++|
T Consensus 2 ~l~~~~~w~-----~~s~~sl~~~~~~l~~vsP~W~~~~~~~g~l~~-----~~d~~~~~~~~~~k~~~~~l~~~~~~~~ 71 (298)
T cd06549 2 ALAFYTPWD-----DASFASLKRHAPRLDWLVPEWLNLTGPEGRIDV-----FVDPQGVAIIAAAKAHPKVLPLVQNISG 71 (298)
T ss_pred eeEEEecCC-----hhhHHHHHHhhccCCEEeceeEEEecCCCceec-----cCChHHHHHHHHHHcCCceeEEEEecCC
Confidence 789999996 222333333456899999999999743333321 11222334456666543 677778888
Q ss_pred CCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcchhhhHHHHHHHHHHhcCCCCcE
Q psy4449 1791 WNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLL 1870 (2417)
Q Consensus 1791 w~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~~~~~llkeLr~~l~~~~~~ 1870 (2417)
+..+ +..|+.|+++++.|++||+++++++++|||||||||||++. ++|+++|+.||+|||++|++++++
T Consensus 72 ~~~~-~~~~~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~----------~~d~~~~~~fl~eL~~~l~~~~~~ 140 (298)
T cd06549 72 GAWD-GKNIARLLADPSARAKFIANIAAYLERNQADGIVLDFEELP----------ADDLPKYVAFLSELRRRLPAQGKQ 140 (298)
T ss_pred CCCC-HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCC----------hhHHHHHHHHHHHHHHHhhhcCcE
Confidence 7654 35799999999999999999999999999999999999874 679999999999999999999999
Q ss_pred EEEEECCChhhhcccCCccccccCcceEEEEeccCCCCCCCCCCCCCcCCCCCCCCCCCccHHHHHHHHHHcCCCCCcEe
Q psy4449 1871 LSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKKVI 1950 (2417)
Q Consensus 1871 Ls~av~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~aPLy~~~~~~~~~~nv~~~v~~~~~~G~p~~KLv 1950 (2417)
|+++|++.. ..||+++|++++|+|+||+||+|+.|+ .+|+.+|+. .++..+++. ..|+|++||+
T Consensus 141 lsv~v~~~~----~~~d~~~l~~~~D~v~lMtYD~~~~~~-~~gp~a~~~----------~~~~~~~~~-~~~vp~~Klv 204 (298)
T cd06549 141 LTVTVPADE----ADWNLKALARNADKLILMAYDEHYQGG-APGPIASQD----------WFESNLAQA-VKKLPPEKLI 204 (298)
T ss_pred EEEEecCCC----CCCCHHHHHHhCCEEEEEEeccCCCCC-CCCCCCChh----------hHHHHHHHH-HhCCCHHHEE
Confidence 999998754 358999999999999999999999764 345555443 255566664 4789999999
Q ss_pred eeccccceeeEeccCCCCCCCCccccCCCCCCccccCccchHHHHHHhhhcCCcEEEEcCCCceeeEEeeC----CEEEE
Q psy4449 1951 FGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKG----DQWVG 2026 (2417)
Q Consensus 1951 lGiP~YG~~ftl~~~~~~~~~a~~~g~g~~g~~t~~~G~l~y~eic~~~~~~~~~~~~D~~~~~~py~~~~----~~wv~ 2026 (2417)
||||+|||.|++... + ..++..+...++.+.+..+.||++.....|.|.+ .|+||
T Consensus 205 lGip~YG~~w~~~~~------------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~h~Vw 263 (298)
T cd06549 205 VALGSYGYDWTKGGN------------T---------KAISSEAAWLLAAHASAAVKFDDKASNATYFFYDDEGVSHEVW 263 (298)
T ss_pred EEecccCccccCCCC------------C---------cccCHHHHHHHHHHcCCcceecccccCCceEEEcCCCcEEEEE
Confidence 999999999986321 0 1133445555566777888888876655666632 27999
Q ss_pred eCCHHHHHHHHHHhhcCCcceEEEEeccCccc
Q psy4449 2027 FDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 2058 (2417)
Q Consensus 2027 Ydd~~Si~~K~~~~k~~gLgGvmiW~ld~DDf 2058 (2417)
|||.+|++.|+++++++||||+++|+|++||.
T Consensus 264 ~~d~~Sl~~K~~~a~~~~l~Gva~W~lg~ed~ 295 (298)
T cd06549 264 MLDAVTLFNQLKAVQRLGPAGVALWRLGSEDP 295 (298)
T ss_pred eccHHHHHHHHHHHHHcCCCcEEEEeccCCCC
Confidence 99999999999999999999999999999984
No 28
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=100.00 E-value=1.1e-35 Score=365.62 Aligned_cols=289 Identities=18% Similarity=0.261 Sum_probs=213.4
Q ss_pred EEEEEeeccCCCCCCCCCCccccCCCCccEEEEEeEEecCCcceEecCCCCcccchhHHHHhhcCCcccCCCcEEEEEec
Q psy4449 385 VVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFYQRISSSPLVTHGKVKILIAIG 464 (2417)
Q Consensus 385 vvcY~~~W~~~~~g~~~~~~~~i~~~~~THIiyaFa~~~~~~~~~~~~d~~~d~~~~~~~~~~~lk~~~~p~lKvllSiG 464 (2417)
++|||+.|.... +..-.....++|||+..+..+...+..+.. +.+......+..+| .+.+.++++.+++
T Consensus 2 ~l~~~~~w~~~s-----~~sl~~~~~~l~~vsP~W~~~~~~~g~l~~-----~~d~~~~~~~~~~k-~~~~~l~~~~~~~ 70 (298)
T cd06549 2 ALAFYTPWDDAS-----FASLKRHAPRLDWLVPEWLNLTGPEGRIDV-----FVDPQGVAIIAAAK-AHPKVLPLVQNIS 70 (298)
T ss_pred eeEEEecCChhh-----HHHHHHhhccCCEEeceeEEEecCCCceec-----cCChHHHHHHHHHH-cCCceeEEEEecC
Confidence 789999995422 222233345899999999999743333321 11222222334444 4577899999999
Q ss_pred CCCCCCCcchhhhccCHHHHHHHHHHHHHHhhhCCcceEEEEecCCCccCCcCCCCCcchhhhHHHHHHHHHHHhccCCc
Q psy4449 465 GWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKHDY 544 (2417)
Q Consensus 465 Gw~~s~g~~fs~~~s~~~~R~~fi~svv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~nf~~ll~eLR~~f~~~~~ 544 (2417)
|+..+. ..|+.++++++.|++||+++++++++|||||||||||++. ++|+++|+.||+|||++|++.++
T Consensus 71 ~~~~~~-~~~~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~----------~~d~~~~~~fl~eL~~~l~~~~~ 139 (298)
T cd06549 71 GGAWDG-KNIARLLADPSARAKFIANIAAYLERNQADGIVLDFEELP----------ADDLPKYVAFLSELRRRLPAQGK 139 (298)
T ss_pred CCCCCH-HHHHHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCC----------hhHHHHHHHHHHHHHHHhhhcCc
Confidence 887654 5699999999999999999999999999999999999873 67899999999999999999889
Q ss_pred ceEeeccchhhhhhhcCCccccccccceEEEEeeccCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCCcE
Q psy4449 545 SIAVGISGYKEILEVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPNYNINTALKLIDELGGDKRKI 624 (2417)
Q Consensus 545 ~Lsvav~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~sPL~~~~~~~~~~~~v~~~v~~~~~~G~p~~KL 624 (2417)
.|++++++.. ..||++.|.+++||++||+||+|+.|. +++|+.+. ..++..+++. ..|+|++||
T Consensus 140 ~lsv~v~~~~----~~~d~~~l~~~~D~v~lMtYD~~~~~~----~~gp~a~~-------~~~~~~~~~~-~~~vp~~Kl 203 (298)
T cd06549 140 QLTVTVPADE----ADWNLKALARNADKLILMAYDEHYQGG----APGPIASQ-------DWFESNLAQA-VKKLPPEKL 203 (298)
T ss_pred EEEEEecCCC----CCCCHHHHHHhCCEEEEEEeccCCCCC----CCCCCCCh-------hhHHHHHHHH-HhCCCHHHE
Confidence 9999987653 358999999999999999999998764 34444321 2455566554 479999999
Q ss_pred EEeecccceeeeeccCCCCCCCCcccCCCCCCcccCCccchhHHHHHHHHhcCcccccccccCCCcCccCccccccccCC
Q psy4449 625 VIGVPFYGQSYTLKLDKEHGLGAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEPRSMGTLKLDKEHGL 704 (2417)
Q Consensus 625 vlGvP~YGr~~~l~~~~~~g~~~~~~g~g~~g~~t~~~g~~~y~eic~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (2417)
+||||||||.|++... + ..+...+...+++..+
T Consensus 204 vlGip~YG~~w~~~~~------------~---------~~~~~~~~~~~~~~~~-------------------------- 236 (298)
T cd06549 204 IVALGSYGYDWTKGGN------------T---------KAISSEAAWLLAAHAS-------------------------- 236 (298)
T ss_pred EEEecccCccccCCCC------------C---------cccCHHHHHHHHHHcC--------------------------
Confidence 9999999999985321 0 0111222222222211
Q ss_pred CCCCCCCCCCCccccCCCchhhhhhhhhhccCceeEeeCCCCcce-eEec---C-CEEEEcCCHHHHHHHHHHHHhcCCc
Q psy4449 705 GAETDGPGLAGEYTQQPGMLAYYEICYRIKTRKWTVQRNTKSLEP-FTFQ---G-DQWVSYEDPTSLTEKVKFIKSNGYA 779 (2417)
Q Consensus 705 ~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~w~~~~d~~~~~p-Y~~~---~-~~~i~Ydd~~Si~~K~~y~~~~gLg 779 (2417)
....||+....| |.|. | .++|+|||.+||+.|+++|+++|||
T Consensus 237 ---------------------------------~~~~~~~~~~~~~~~~~~~~g~~h~Vw~~d~~Sl~~K~~~a~~~~l~ 283 (298)
T cd06549 237 ---------------------------------AAVKFDDKASNATYFFYDDEGVSHEVWMLDAVTLFNQLKAVQRLGPA 283 (298)
T ss_pred ---------------------------------CcceecccccCCceEEEcCCCcEEEEEeccHHHHHHHHHHHHHcCCC
Confidence 124555555444 4452 2 2799999999999999999999999
Q ss_pred eEEeeccccccc
Q psy4449 780 GIMAWTIDLDDF 791 (2417)
Q Consensus 780 Gv~iW~ld~DD~ 791 (2417)
|+++|.|++||.
T Consensus 284 Gva~W~lg~ed~ 295 (298)
T cd06549 284 GVALWRLGSEDP 295 (298)
T ss_pred cEEEEeccCCCC
Confidence 999999999984
No 29
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=100.00 E-value=5e-32 Score=318.87 Aligned_cols=175 Identities=37% Similarity=0.750 Sum_probs=147.1
Q ss_pred EEEEEecCcccccCCCCCCCCCCCCCCccEEEEEeEEecCCCcEEccCCCcchhhHHHHHHHHHHHhC--CCEEEEEEcC
Q psy4449 1713 IVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGG 1790 (2417)
Q Consensus 1713 vvcY~~~W~~yr~~~~~~~~~~i~~~~cTHIiyaFa~i~~~~~~~~~~d~~~d~~~~~~~~i~~lk~~--glKvllsIGG 1790 (2417)
+||||.+|+.++... +..++.++||||+|+|+.++.++......+. ......+.++.+|++ |+|||+||||
T Consensus 1 vv~y~~~w~~~~~~~----~~~~~~~~~thvi~~f~~v~~~~~~~~~~~~---~~~~~~~~i~~l~~~~~g~kv~~sigg 73 (210)
T cd00598 1 VICYYDGWSSGRGPD----PTDIPLSLCTHIIYAFAEISSDGSLNLFGDK---SEEPLKGALEELASKKPGLKVLISIGG 73 (210)
T ss_pred CEEEEccccccCCCC----hhhCCcccCCEEEEeeEEECCCCCEecccCc---ccHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 689999999775432 8899999999999999999988766542221 223456777888876 9999999999
Q ss_pred CCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcchhhhHHHHHHHHHHhcCCCCcE
Q psy4449 1791 WNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLL 1870 (2417)
Q Consensus 1791 w~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~~~~~llkeLr~~l~~~~~~ 1870 (2417)
|.... .| +++++++.|++|++++++++++|+|||||||||+|... ...++++|+.||++||++|++++++
T Consensus 74 ~~~~~--~~-~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~-------~~~~~~~~~~ll~~lr~~l~~~~~~ 143 (210)
T cd00598 74 WTDSS--PF-TLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAA-------DNSDRENFITLLRELRSALGAANYL 143 (210)
T ss_pred CCCCC--Cc-hhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCc-------CccHHHHHHHHHHHHHHHhcccCcE
Confidence 98753 34 88999999999999999999999999999999998621 1146899999999999999988999
Q ss_pred EEEEECCChhhhcccCCccccccCcceEEEEecc
Q psy4449 1871 LSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYD 1904 (2417)
Q Consensus 1871 Ls~av~~~~~~~~~~yd~~~l~~~vD~i~vMtYD 1904 (2417)
|++++++.......+|++.++.+++|||+||+||
T Consensus 144 ls~a~~~~~~~~~~~~~~~~l~~~vD~v~vm~Yd 177 (210)
T cd00598 144 LTIAVPASYFDLGYAYDVPAIGDYVDFVNVMTYD 177 (210)
T ss_pred EEEEecCChHHhhccCCHHHHHhhCCEEEEeeec
Confidence 9999998776554468999999999999999999
No 30
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=99.97 E-value=5e-31 Score=315.40 Aligned_cols=206 Identities=22% Similarity=0.357 Sum_probs=159.2
Q ss_pred EEEEEEecCcccccCCCCCC-CCCCCCCCccEEEEEeEEecCCCcEEccCCCcchh--hHHHHHHHHHHHhCCCEEEEEE
Q psy4449 1712 KIVCYFTNWAWYRQSGGKYL-PSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADL--DNKFYEKVTALKKKGVKVTLAI 1788 (2417)
Q Consensus 1712 ~vvcY~~~W~~yr~~~~~~~-~~~i~~~~cTHIiyaFa~i~~~~~~~~~~d~~~d~--~~~~~~~i~~lk~~glKvllsI 1788 (2417)
|+||||++|..++....... +..++..+||||||+|+.++.++.+ ...+.+.+. ..++.++|+.+|++|+||||||
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G~l-~~~d~~~~~~~~~~~~~~i~~~~~~g~KVllSi 79 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDGNI-HLNDHPPDHPRFTTLWTELAILQSSGVKVMGML 79 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCCeE-EECCCCCCcchhhHHHHHHHHHHhCCCEEEEEE
Confidence 68999999987655433333 3467889999999999999987644 333444332 2367888999999999999999
Q ss_pred cCCCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcchhhhHHHHHHHHHHhcCCCC
Q psy4449 1789 GGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHD 1868 (2417)
Q Consensus 1789 GGw~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~~~~~llkeLr~~l~~~~ 1868 (2417)
|||..+ .|+.++++++.|++|++++++++++|+|||||||||||. ++.+|+.||++||++|++ +
T Consensus 80 GG~~~~---~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~------------~~~~~~~ll~~Lr~~~~~-~ 143 (256)
T cd06546 80 GGAAPG---SFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPM------------SLDGIIRLIDRLRSDFGP-D 143 (256)
T ss_pred CCCCCC---CcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCC------------CHhHHHHHHHHHHHHhCC-C
Confidence 999853 399988999999999999999999999999999999985 346999999999999964 6
Q ss_pred cEEEEEECCC----hhhhcccCCccccc----cCcceEEEEeccCCCCCCCCCCCCCcCCCCCCCCCCCccHHHHHHHHH
Q psy4449 1869 LLLSAAVSPS----KAVIDNAYDIPVMS----ENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWV 1940 (2417)
Q Consensus 1869 ~~Ls~av~~~----~~~~~~~yd~~~l~----~~vD~i~vMtYD~~g~w~~~tg~~aPLy~~~~~~~~~~nv~~~v~~~~ 1940 (2417)
++||+|+.+. ......++++.+|. .++||+|+|.||.+|.-. +. .....|+
T Consensus 144 ~~lT~Ap~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~~~--------------------~~-~~~~~~~ 202 (256)
T cd06546 144 FIITLAPVASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGSMS--------------------SP-SDYDAIV 202 (256)
T ss_pred cEEEECCccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCCcc--------------------CH-HHHHHHH
Confidence 8888876432 11122356766554 599999999999876410 01 1234566
Q ss_pred HcCCCCCcEeeeccc
Q psy4449 1941 SHGADRKKVIFGMPM 1955 (2417)
Q Consensus 1941 ~~G~p~~KLvlGiP~ 1955 (2417)
..|+|++||+||+|.
T Consensus 203 ~~~~~~~Kv~iGlpa 217 (256)
T cd06546 203 AQGWDPERIVIGLLT 217 (256)
T ss_pred HcCCCcccEEEEEec
Confidence 779999999999994
No 31
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=99.97 E-value=1.1e-30 Score=312.47 Aligned_cols=206 Identities=19% Similarity=0.313 Sum_probs=155.7
Q ss_pred eEEEEEeeccCCCCCCCCCC-ccccCCCCccEEEEEeEEecCCcceEecCCCCcccc--hhHHHHhhcCCcccCCCcEEE
Q psy4449 384 KVVCYVTNWSGSRKSDGKFV-PENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADID--DNFYQRISSSPLVTHGKVKIL 460 (2417)
Q Consensus 384 ~vvcY~~~W~~~~~g~~~~~-~~~i~~~~~THIiyaFa~~~~~~~~~~~~d~~~d~~--~~~~~~~~~lk~~~~p~lKvl 460 (2417)
|+||||++|..++.+..... +..++..+||||||+|++++.++ .+...+.+.+.+ .++.+.++.++ ++++|||
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G-~l~~~d~~~~~~~~~~~~~~i~~~~---~~g~KVl 76 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDG-NIHLNDHPPDHPRFTTLWTELAILQ---SSGVKVM 76 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCC-eEEECCCCCCcchhhHHHHHHHHHH---hCCCEEE
Confidence 79999999987766544433 44678899999999999999876 454555443322 24455555444 7899999
Q ss_pred EEecCCCCCCCcchhhhccCHHHHHHHHHHHHHHhhhCCcceEEEEecCCCccCCcCCCCCcchhhhHHHHHHHHHHHhc
Q psy4449 461 IAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFD 540 (2417)
Q Consensus 461 lSiGGw~~s~g~~fs~~~s~~~~R~~fi~svv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~nf~~ll~eLR~~f~ 540 (2417)
||||||..+ .|+.++++++.|++|++++++++++|+|||||||||||. +..+|..||+|||++|+
T Consensus 77 lSiGG~~~~---~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~------------~~~~~~~ll~~Lr~~~~ 141 (256)
T cd06546 77 GMLGGAAPG---SFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPM------------SLDGIIRLIDRLRSDFG 141 (256)
T ss_pred EEECCCCCC---CcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCC------------CHhHHHHHHHHHHHHhC
Confidence 999999843 388888999999999999999999999999999999984 24689999999999997
Q ss_pred cCCcceEeeccchhh----hhhhcCCccccc----cccceEEEEeeccCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHH
Q psy4449 541 KHDYSIAVGISGYKE----ILEVAYDFPALN----DHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPNYNINTALK 612 (2417)
Q Consensus 541 ~~~~~Lsvav~~~~~----~~~~~yd~~~l~----~~vD~i~vMtYD~~g~w~~~tg~~sPL~~~~~~~~~~~~v~~~v~ 612 (2417)
+ .++|++|+..... ....++++..+. .++||+|+|.||.+|.-. +... ..
T Consensus 142 ~-~~~lT~Ap~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~~~--------------------~~~~-~~ 199 (256)
T cd06546 142 P-DFIITLAPVASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGSMS--------------------SPSD-YD 199 (256)
T ss_pred C-CcEEEECCccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCCcc--------------------CHHH-HH
Confidence 4 4789988754311 111245666654 599999999999876411 1122 23
Q ss_pred HHHHhCCCCCcEEEeecc
Q psy4449 613 LIDELGGDKRKIVIGVPF 630 (2417)
Q Consensus 613 ~~~~~G~p~~KLvlGvP~ 630 (2417)
.|+..|+|++||+||+|.
T Consensus 200 ~~~~~~~~~~Kv~iGlpa 217 (256)
T cd06546 200 AIVAQGWDPERIVIGLLT 217 (256)
T ss_pred HHHHcCCCcccEEEEEec
Confidence 355679999999999996
No 32
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=99.97 E-value=1.9e-30 Score=305.45 Aligned_cols=177 Identities=34% Similarity=0.721 Sum_probs=145.8
Q ss_pred EEEEEeeccCCCCCCCCCCccccCCCCccEEEEEeEEecCCcceEecCCCCcccchhHHHHhhcCCcccCCCcEEEEEec
Q psy4449 385 VVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFYQRISSSPLVTHGKVKILIAIG 464 (2417)
Q Consensus 385 vvcY~~~W~~~~~g~~~~~~~~i~~~~~THIiyaFa~~~~~~~~~~~~d~~~d~~~~~~~~~~~lk~~~~p~lKvllSiG 464 (2417)
|||||.+|..++.+ .+..++.++||||+|+|+.++.++......+ .........++.++ +++|++|||+|||
T Consensus 1 vv~y~~~w~~~~~~----~~~~~~~~~~thvi~~f~~v~~~~~~~~~~~---~~~~~~~~~i~~l~-~~~~g~kv~~sig 72 (210)
T cd00598 1 VICYYDGWSSGRGP----DPTDIPLSLCTHIIYAFAEISSDGSLNLFGD---KSEEPLKGALEELA-SKKPGLKVLISIG 72 (210)
T ss_pred CEEEEccccccCCC----ChhhCCcccCCEEEEeeEEECCCCCEecccC---cccHHHHHHHHHHH-HhCCCCEEEEEEc
Confidence 69999999987643 2889999999999999999998875443111 12334555666666 3458999999999
Q ss_pred CCCCCCCcchhhhccCHHHHHHHHHHHHHHhhhCCcceEEEEecCCCccCCcCCCCCcchhhhHHHHHHHHHHHhccCCc
Q psy4449 465 GWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKHDY 544 (2417)
Q Consensus 465 Gw~~s~g~~fs~~~s~~~~R~~fi~svv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~nf~~ll~eLR~~f~~~~~ 544 (2417)
||.... .+ .++++++.|++|++++++++++|+|||||||||+|...+ ..++++|..||++||++|++.++
T Consensus 73 g~~~~~--~~-~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~-------~~~~~~~~~ll~~lr~~l~~~~~ 142 (210)
T cd00598 73 GWTDSS--PF-TLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAAD-------NSDRENFITLLRELRSALGAANY 142 (210)
T ss_pred CCCCCC--Cc-hhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcC-------ccHHHHHHHHHHHHHHHhcccCc
Confidence 998764 34 889999999999999999999999999999999996311 14689999999999999998889
Q ss_pred ceEeeccchhhhhhhcCCccccccccceEEEEeec
Q psy4449 545 SIAVGISGYKEILEVAYDFPALNDHVEFMSLMSYD 579 (2417)
Q Consensus 545 ~Lsvav~~~~~~~~~~yd~~~l~~~vD~i~vMtYD 579 (2417)
+|++++++........|++.++.+++||++||+||
T Consensus 143 ~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~vm~Yd 177 (210)
T cd00598 143 LLTIAVPASYFDLGYAYDVPAIGDYVDFVNVMTYD 177 (210)
T ss_pred EEEEEecCChHHhhccCCHHHHHhhCCEEEEeeec
Confidence 99999987665444458999999999999999999
No 33
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=99.97 E-value=1.9e-29 Score=312.23 Aligned_cols=223 Identities=24% Similarity=0.302 Sum_probs=160.9
Q ss_pred CEEEEEEecCcccccCCCCCCCCCCCCCCccEEEEEeEEecCCCcEEccC----CCcchhhHHHHHHHHHHHhCCCEEEE
Q psy4449 1711 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPH----DTWADLDNKFYEKVTALKKKGVKVTL 1786 (2417)
Q Consensus 1711 ~~vvcY~~~W~~yr~~~~~~~~~~i~~~~cTHIiyaFa~i~~~~~~~~~~----d~~~d~~~~~~~~i~~lk~~glKvll 1786 (2417)
+++||||++|+.+|.+.. + +.++.+++||||+|+|+.++.++...... .........+.++|+.+|++|+||||
T Consensus 1 k~~vgY~~~w~~~~~~~~-~-~~~~~~~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q~~G~KVll 78 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGR-Q-DLDDVPSKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPAEFKADIKALQAKGKKVLI 78 (312)
T ss_pred CeEEEecCcccCCCCCCC-C-CcccCCCCCCEEEEcceeecCCCceeEeecccCCcccCChHHHHHHHHHHHHCCCEEEE
Confidence 579999999998876643 3 44455699999999999998764322110 01112235678899999999999999
Q ss_pred EEcCCCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcchhhhHHHHHHHHHHhcCC
Q psy4449 1787 AIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNP 1866 (2417)
Q Consensus 1787 sIGGw~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~~~~~llkeLr~~l~~ 1866 (2417)
|||||..+. ++.+++.|++|++++++++++|+|||||||||+|.. ......++.+|+.|||+||++|++
T Consensus 79 SiGG~~~~~------~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~-----~~~~~~~~~~~~~~lk~lr~~~~~ 147 (312)
T cd02871 79 SIGGANGHV------DLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSN-----PLNATPVITNLISALKQLKDHYGP 147 (312)
T ss_pred EEeCCCCcc------ccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCc-----cCCcHHHHHHHHHHHHHHHHHcCC
Confidence 999997531 478899999999999999999999999999999862 122356899999999999999975
Q ss_pred CCcEEEEEECCChhh--------hcccC--CccccccCcceEEEEeccCCCCCCCCCCCCCcCCCCCCCCCCCccHHHHH
Q psy4449 1867 HDLLLSAAVSPSKAV--------IDNAY--DIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSL 1936 (2417)
Q Consensus 1867 ~~~~Ls~av~~~~~~--------~~~~y--d~~~l~~~vD~i~vMtYD~~g~w~~~tg~~aPLy~~~~~~~~~~nv~~~v 1936 (2417)
+++||+|+...... ....| .+.++.+++||||||+||.++.+. .. +.... ....+...++
T Consensus 148 -~~~lT~AP~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~~~----~~-~~~~~----~~~~~~~~~~ 217 (312)
T cd02871 148 -NFILTMAPETPYVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMGG----CD-GQSYS----QGTADFLVAL 217 (312)
T ss_pred -CeEEEECCCcccccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCccc----cc-ccCCc----cchhHHHHHH
Confidence 89999985432111 11223 366788899999999999987531 11 01110 0112233344
Q ss_pred HHHHHcC-----------CCCCcEeeecccc
Q psy4449 1937 HYWVSHG-----------ADRKKVIFGMPMY 1956 (2417)
Q Consensus 1937 ~~~~~~G-----------~p~~KLvlGiP~Y 1956 (2417)
..++.+| +|++||+||+|+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~p~~Kv~iG~pa~ 248 (312)
T cd02871 218 ADMLLTGFPIAGNDRFPPLPADKVVIGLPAS 248 (312)
T ss_pred HHHHHcCCCccCCcccccCChhhEEEeccCC
Confidence 4445555 8999999999964
No 34
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=99.96 E-value=1.5e-28 Score=304.24 Aligned_cols=223 Identities=18% Similarity=0.245 Sum_probs=157.8
Q ss_pred CeEEEEEeeccCCCCCCCCCCccccCCCCccEEEEEeEEecCCcc-eEecC---CCCcccchhHHHHhhcCCcccCCCcE
Q psy4449 383 PKVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTL-SIQAG---NPEADIDDNFYQRISSSPLVTHGKVK 458 (2417)
Q Consensus 383 ~~vvcY~~~W~~~~~g~~~~~~~~i~~~~~THIiyaFa~~~~~~~-~~~~~---d~~~d~~~~~~~~~~~lk~~~~p~lK 458 (2417)
++|||||++|+.++.+.. +..+.+ .++||||+|+|+.++.++. .+... .........+.+.++.++ ..++|
T Consensus 1 k~~vgY~~~w~~~~~~~~-~~~~~~-~~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q---~~G~K 75 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGR-QDLDDV-PSKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPAEFKADIKALQ---AKGKK 75 (312)
T ss_pred CeEEEecCcccCCCCCCC-CCcccC-CCCCCEEEEcceeecCCCceeEeecccCCcccCChHHHHHHHHHHH---HCCCE
Confidence 589999999999887643 344444 4899999999999987642 22110 011112234555555554 56899
Q ss_pred EEEEecCCCCCCCcchhhhccCHHHHHHHHHHHHHHhhhCCcceEEEEecCCCccCCcCCCCCcchhhhHHHHHHHHHHH
Q psy4449 459 ILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAE 538 (2417)
Q Consensus 459 vllSiGGw~~s~g~~fs~~~s~~~~R~~fi~svv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~nf~~ll~eLR~~ 538 (2417)
||||||||..+. ++++++.|++|++++++++++|+|||||||||+|... .....++++|+.||++||++
T Consensus 76 VllSiGG~~~~~------~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~-----~~~~~~~~~~~~~lk~lr~~ 144 (312)
T cd02871 76 VLISIGGANGHV------DLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNP-----LNATPVITNLISALKQLKDH 144 (312)
T ss_pred EEEEEeCCCCcc------ccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCcc-----CCcHHHHHHHHHHHHHHHHH
Confidence 999999997542 3788999999999999999999999999999999632 12256889999999999999
Q ss_pred hccCCcceEeeccchhhh--------hhhcC--CccccccccceEEEEeeccCCCCCCCcCCCCCCCCCCCCCCCCCCHH
Q psy4449 539 FDKHDYSIAVGISGYKEI--------LEVAY--DFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPNYNIN 608 (2417)
Q Consensus 539 f~~~~~~Lsvav~~~~~~--------~~~~y--d~~~l~~~vD~i~vMtYD~~g~w~~~tg~~sPL~~~~~~~~~~~~v~ 608 (2417)
|++ +++||+|+...... ....| .+..+..++||||||+||.+|.+. . .+.+... ...+..
T Consensus 145 ~~~-~~~lT~AP~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~~~----~-~~~~~~~----~~~~~~ 214 (312)
T cd02871 145 YGP-NFILTMAPETPYVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMGG----C-DGQSYSQ----GTADFL 214 (312)
T ss_pred cCC-CeEEEECCCcccccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCccc----c-cccCCcc----chhHHH
Confidence 976 79999998643211 11223 366788899999999999987641 1 0111000 112334
Q ss_pred HHHHHHHHhC-----------CCCCcEEEeeccc
Q psy4449 609 TALKLIDELG-----------GDKRKIVIGVPFY 631 (2417)
Q Consensus 609 ~~v~~~~~~G-----------~p~~KLvlGvP~Y 631 (2417)
.++..++..| +|++||+||+|+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~p~~Kv~iG~pa~ 248 (312)
T cd02871 215 VALADMLLTGFPIAGNDRFPPLPADKVVIGLPAS 248 (312)
T ss_pred HHHHHHHHcCCCccCCcccccCChhhEEEeccCC
Confidence 4555555566 8999999999985
No 35
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=99.96 E-value=7.6e-29 Score=294.24 Aligned_cols=199 Identities=16% Similarity=0.210 Sum_probs=147.5
Q ss_pred CccccCCCC--ccEEEEEeEE-ecCC----cceEecCCCCcccchhHHHHhhcCCcccCCCcEEEEEecCCCCCCCcchh
Q psy4449 403 VPENIDYKL--CTHIVYAFAS-LDPN----TLSIQAGNPEADIDDNFYQRISSSPLVTHGKVKILIAIGGWTDSSGEKYS 475 (2417)
Q Consensus 403 ~~~~i~~~~--~THIiyaFa~-~~~~----~~~~~~~d~~~d~~~~~~~~~~~lk~~~~p~lKvllSiGGw~~s~g~~fs 475 (2417)
.+++||.++ ||||||+||. .+.. +.. .....+.+...++++..|| .++|++|||||||||+.+....+.
T Consensus 14 ~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lK-~~~p~lKvllSiGG~~~~~~~~~~ 89 (253)
T cd06544 14 TFSDVPINPKVEFHFILSFAIDYDTESNPTNGK---FNPYWDTENLTPEAVKSIK-AQHPNVKVVISIGGRGVQNNPTPF 89 (253)
T ss_pred cccccCCCCCeeEEEEEEeeeecccccCCCCCc---cccccCccccCHHHHHHHH-HhCCCcEEEEEeCCCCCCCCcccc
Confidence 588999888 9999999994 3221 111 1222244555778888898 789999999999999975322233
Q ss_pred hhccCHHHHHHHHHHHHHHhhhCCcceEEEEecCCCccCCcCCCCCcchhhhHHHHHHHHHHHhccCCcceEeeccchhh
Q psy4449 476 QLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKHDYSIAVGISGYKE 555 (2417)
Q Consensus 476 ~~~s~~~~R~~fi~svv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~nf~~ll~eLR~~f~~~~~~Lsvav~~~~~ 555 (2417)
...+....|++||+|+++||++|||||||||||||. .|+++|+.||++||++|++.++++.+++++...
T Consensus 90 ~~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~-----------~d~~~f~~ll~~l~~~l~~~~~lt~a~vap~~~ 158 (253)
T cd06544 90 DPSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFP-----------ADPDTFVECIGQLITELKNNGVIKVASIAPSED 158 (253)
T ss_pred CchhhhhHHHHHHHHHHHHHHHhCCCceeeecccCC-----------cCHHHHHHHHHHHHHHhhhcCCeEEEEecCCcc
Confidence 334444556777999999999999999999999983 578999999999999999888555555555433
Q ss_pred hhhhcCCccccccccceEEEEeeccCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHH--HhCCCCCcEEEeecccce
Q psy4449 556 ILEVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPNYNINTALKLID--ELGGDKRKIVIGVPFYGQ 633 (2417)
Q Consensus 556 ~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~sPL~~~~~~~~~~~~v~~~v~~~~--~~G~p~~KLvlGvP~YGr 633 (2417)
.. ..+.++.+.+++|+|++|.||+++.+.. . +.+.-++.|. ..++|++||+||+|.+++
T Consensus 159 ~~-~~~y~~~~~~~~d~id~~~~qfy~~~~~-------~-----------~~~~~~~~~~~~~~~~p~~Kv~lGl~a~~~ 219 (253)
T cd06544 159 AE-QSHYLALYNAYGDYIDYVNYQFYNYGVP-------T-----------TVAKYVEFYDEVANNYPGKKVLASFSTDGE 219 (253)
T ss_pred cc-ccccHHHHHHhhCceeEEEhhhhCCCCC-------C-----------CHHHHHHHHHHHHhCCCcccEEEEEecCCC
Confidence 32 3455888999999999999999987431 1 2333334432 368999999999999986
Q ss_pred ee
Q psy4449 634 SY 635 (2417)
Q Consensus 634 ~~ 635 (2417)
.|
T Consensus 220 ~~ 221 (253)
T cd06544 220 DG 221 (253)
T ss_pred cc
Confidence 55
No 36
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=99.96 E-value=3.7e-28 Score=290.13 Aligned_cols=250 Identities=22% Similarity=0.376 Sum_probs=201.6
Q ss_pred HHHHHHhCCCEEEEEEcCCC----CCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcc
Q psy4449 1773 KVTALKKKGVKVTLAIGGWN----DSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPAS 1848 (2417)
Q Consensus 1773 ~i~~lk~~glKvllsIGGw~----~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~ 1848 (2417)
.+...+.+++|.++.|-.-+ +..++.++.+++++..++++++++++.++.+|+.|+.||+|. ..+.
T Consensus 152 ~~~~~~~~~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~----------v~~~ 221 (423)
T COG3858 152 VIEIAQCRKIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFEN----------VGPG 221 (423)
T ss_pred hhhhhhhcccceeEEEecCCccccccchHHHHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhh----------CCHH
Confidence 35556777888887775433 112355799999999999999999999999999999999994 4588
Q ss_pred hhhhHHHHHHHHHHhcCCCCcEEEEEECCChh-----hhcccCCccccccCcceEEEEeccCCCCCCCCCCCCCcCCCCC
Q psy4449 1849 DKQGFADLIKELRAAFNPHDLLLSAAVSPSKA-----VIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALP 1923 (2417)
Q Consensus 1849 d~~~~~~llkeLr~~l~~~~~~Ls~av~~~~~-----~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~aPLy~~~ 1923 (2417)
|++.|..||+++|++|++.|+.+++||+|... .+...||+..+++++|||.||+||.|..| +.+|+.||+-+
T Consensus 222 DR~~yt~flR~~r~~l~~~G~~~siAvaakt~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h~~g-G~PG~vA~i~~-- 298 (423)
T COG3858 222 DRELYTDFLRQVRDALHSGGYTVSIAVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHYSG-GPPGPVASIGW-- 298 (423)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEecCCCCCCcCccccchhhhhhhceeeeEEEEEEeccCcCC-CCCCcccCchh--
Confidence 99999999999999999999999999998643 34467999999999999999999999997 56788888865
Q ss_pred CCCCCCccHHHHHHHHHHcCCCCCcEeeeccccceeeEeccCCCCCCCCccccCCCCCCccccCccchHHHHHHhhhcCC
Q psy4449 1924 NDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDG 2003 (2417)
Q Consensus 1924 ~~~~~~~nv~~~v~~~~~~G~p~~KLvlGiP~YG~~ftl~~~~~~~~~a~~~g~g~~g~~t~~~G~l~y~eic~~~~~~~ 2003 (2417)
|+..++|.+.. +|++||+||||+||+.|.+..... |...+ + ++..|-.+.....+
T Consensus 299 --------vr~~ieya~T~-iP~~Kv~mGip~YGYDW~~~y~~~-------------g~~~~--a-~~~~~~i~ia~~y~ 353 (423)
T COG3858 299 --------VRKVIEYALTV-IPAEKVMMGIPLYGYDWTLPYDPL-------------GYLAR--A-ISPDEAIDIANRYN 353 (423)
T ss_pred --------Hhhhhhhhhee-cchHHeEEccccccccccCCCCCC-------------cceee--e-cCcchhhhhhcccC
Confidence 77788888775 999999999999999998754321 11111 1 23333333444556
Q ss_pred cEEEEcCCCceeeEEee---C-CEEEEeCCHHHHHHHHHHhhcCCcceEEEEeccCccccC
Q psy4449 2004 WVVVRDRKRRIGPYAFK---G-DQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDFKN 2060 (2417)
Q Consensus 2004 ~~~~~D~~~~~~py~~~---~-~~wv~Ydd~~Si~~K~~~~k~~gLgGvmiW~ld~DDf~g 2060 (2417)
.++.||...+...|.|. + .|+|||+|.+|++.|+++||++||.||.+|.|+++|.++
T Consensus 354 A~Iq~D~~~qsp~F~y~D~eg~~h~VWfeD~~s~~~k~~lik~ygl~GVs~W~Lg~e~p~~ 414 (423)
T COG3858 354 ATIQYDATSQSPFFYYVDKEGRYHEVWFEDARSFQTKLDLIKEYGLRGVSYWVLGQEDPRN 414 (423)
T ss_pred CccCcCccccCceEEEEcCCCceEEEEcCchHHHHHHHHHHHHcCCceEEEEEecCcchhH
Confidence 88999999875444442 3 589999999999999999999999999999999999765
No 37
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=99.96 E-value=1.8e-28 Score=290.99 Aligned_cols=199 Identities=22% Similarity=0.286 Sum_probs=147.8
Q ss_pred CCCCCCCCC--ccEEEEEeEE-ecCC----CcEEccCCCcchhhHHHHHHHHHHHhC--CCEEEEEEcCCCCCCCcchhH
Q psy4449 1731 LPSDIDSDL--CTHVIYGFAV-LDTD----QLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSR 1801 (2417)
Q Consensus 1731 ~~~~i~~~~--cTHIiyaFa~-i~~~----~~~~~~~d~~~d~~~~~~~~i~~lk~~--glKvllsIGGw~~s~~~~fs~ 1801 (2417)
.+++|+.++ |||||||||. .+.. ...... .| +.+...++++..||++ ++|||||||||+.+.+..+..
T Consensus 14 ~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~lK~~~p~lKvllSiGG~~~~~~~~~~~ 90 (253)
T cd06544 14 TFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNP--YW-DTENLTPEAVKSIKAQHPNVKVVISIGGRGVQNNPTPFD 90 (253)
T ss_pred cccccCCCCCeeEEEEEEeeeecccccCCCCCcccc--cc-CccccCHHHHHHHHHhCCCcEEEEEeCCCCCCCCccccC
Confidence 578999888 9999999994 3321 222221 23 3344567889999987 599999999999853223333
Q ss_pred hhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcchhhhHHHHHHHHHHhcCCCCcEEEEEECCChhh
Q psy4449 1802 LVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAV 1881 (2417)
Q Consensus 1802 ~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~~~~~llkeLr~~l~~~~~~Ls~av~~~~~~ 1881 (2417)
..+....|++||+++++||++|||||||||||||. .|+++|+.||++||++|+++++++.+++.|....
T Consensus 91 ~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~-----------~d~~~f~~ll~~l~~~l~~~~~lt~a~vap~~~~ 159 (253)
T cd06544 91 PSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFP-----------ADPDTFVECIGQLITELKNNGVIKVASIAPSEDA 159 (253)
T ss_pred chhhhhHHHHHHHHHHHHHHHhCCCceeeecccCC-----------cCHHHHHHHHHHHHHHhhhcCCeEEEEecCCccc
Confidence 34445566778999999999999999999999984 4689999999999999998887777777776544
Q ss_pred hcccCCccccccCcceEEEEeccCCCCCCCCCCCCCcCCCCCCCCCCCccHHHHHHHHHHcCCCCCcEeeeccccceee
Q psy4449 1882 IDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSF 1960 (2417)
Q Consensus 1882 ~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~aPLy~~~~~~~~~~nv~~~v~~~~~~G~p~~KLvlGiP~YG~~f 1960 (2417)
. ..++++.+.+++|+|++|+||+++.+... . .-......+.|. ++.|++||+||+|++++.|
T Consensus 160 ~-~~~y~~~~~~~~d~id~~~~qfy~~~~~~------------~---~~~~~~~~~~~~-~~~p~~Kv~lGl~a~~~~~ 221 (253)
T cd06544 160 E-QSHYLALYNAYGDYIDYVNYQFYNYGVPT------------T---VAKYVEFYDEVA-NNYPGKKVLASFSTDGEDG 221 (253)
T ss_pred c-ccccHHHHHHhhCceeEEEhhhhCCCCCC------------C---HHHHHHHHHHHH-hCCCcccEEEEEecCCCcc
Confidence 3 45668889999999999999999874311 0 001112334443 5699999999999998655
No 38
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=99.90 E-value=3.2e-23 Score=248.20 Aligned_cols=243 Identities=15% Similarity=0.339 Sum_probs=186.7
Q ss_pred hhhhhhhccccCCCceEEEEec--c----cc-----cccccChHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCCCCc
Q psy4449 72 GYKSFLGLKEANPELKVYLAVK--S----NF-----VSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDD 140 (2417)
Q Consensus 72 ~y~~~~~LK~~~P~lkvlLsVG--g----~f-----~~~~~~~~~R~~fi~siv~~l~~~~fDGidl~W~~p~~~~~~~~ 140 (2417)
...+.+++|+ ++.++.+. + .| +.+|.++..++++|++++++|+++|+.|+.||+|.
T Consensus 151 ~~~~~~~~~~----i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~--------- 217 (423)
T COG3858 151 NVIEIAQCRK----IKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFEN--------- 217 (423)
T ss_pred chhhhhhhcc----cceeEEEecCCccccccchHHHHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhh---------
Confidence 3445555543 67777762 2 34 78999999999999999999999999999999994
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhcCCcEEEEEecCcccc-----cccccCHhhhccccceEEEEeccCCCCCCCCCCCC
Q psy4449 141 DLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDR-----KTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVK 215 (2417)
Q Consensus 141 ~~~~~~~~r~~f~~ll~eL~~~l~~~~~~Lsv~v~p~~~~-----~~~~yD~~~l~~~vD~v~l~~yd~~~~~~~~~p~~ 215 (2417)
..++||+.|+.|+|++|.+|++.|+.++++|+|.... ...+||+.++++++|||.||+||-|..+..++|++
T Consensus 218 ---v~~~DR~~yt~flR~~r~~l~~~G~~~siAvaakt~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h~~gG~PG~vA 294 (423)
T COG3858 218 ---VGPGDRELYTDFLRQVRDALHSGGYTVSIAVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHYSGGPPGPVA 294 (423)
T ss_pred ---CCHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCCCCCcCccccchhhhhhhceeeeEEEEEEeccCcCCCCCCccc
Confidence 4478999999999999999999999999999987632 34689999999999999999999998775555544
Q ss_pred CCCCCCcccccccccccCHHHHHHHHHHhCCCCccEEEeccccceeeeecccCCCCCCCcccCCCCCCcccccCCchhHH
Q psy4449 216 PNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFF 295 (2417)
Q Consensus 216 ~~~~spl~~~~~~~~~~~v~~~v~~~l~~g~~~sKivlGip~yG~s~~l~~~~~~~~g~p~~Gpg~~g~~t~~~G~lsy~ 295 (2417)
+ ..+|...++|-+. -+|++||+||||+||++|.+.... .|..+.+ .+ ++-
T Consensus 295 ~--------------i~~vr~~ieya~T-~iP~~Kv~mGip~YGYDW~~~y~~---~g~~~~a------~~--~~~---- 344 (423)
T COG3858 295 S--------------IGWVRKVIEYALT-VIPAEKVMMGIPLYGYDWTLPYDP---LGYLARA------IS--PDE---- 344 (423)
T ss_pred C--------------chhHhhhhhhhhe-ecchHHeEEccccccccccCCCCC---Ccceeee------cC--cch----
Confidence 3 4566767776666 599999999999999999975542 1212111 00 110
Q ss_pred HHHhhhccCccccccCCCCCceeEec-----CeEEEccCchhHHHHHHHHHhcCCcceEeeccccccccc
Q psy4449 296 EVCNKFKDKTWRHFTDSNGEPFMVKK-----DEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRG 360 (2417)
Q Consensus 296 EIC~~~~~~~w~~~~d~~~~py~~~~-----~~wV~Yed~~Sv~~K~~y~~~~glGGv~iw~l~~DDf~g 360 (2417)
.|-..-+...-..++...+.||.+.. ..||||||.+|+..|++++|+.||-||++|.|++.|.+.
T Consensus 345 ~i~ia~~y~A~Iq~D~~~qsp~F~y~D~eg~~h~VWfeD~~s~~~k~~lik~ygl~GVs~W~Lg~e~p~~ 414 (423)
T COG3858 345 AIDIANRYNATIQYDATSQSPFFYYVDKEGRYHEVWFEDARSFQTKLDLIKEYGLRGVSYWVLGQEDPRN 414 (423)
T ss_pred hhhhhcccCCccCcCccccCceEEEEcCCCceEEEEcCchHHHHHHHHHHHHcCCceEEEEEecCcchhH
Confidence 12211222233345566677887653 249999999999999999999999999999999999664
No 39
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.89 E-value=8.6e-23 Score=247.38 Aligned_cols=252 Identities=21% Similarity=0.206 Sum_probs=182.0
Q ss_pred EEEEEEecCcccccCCCCCCCCCCCCCCccEEEEEeEEecCCCcEEccCCCcchhhHHHHHHHHHHHhCCCEEEEEEcCC
Q psy4449 1712 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKGVKVTLAIGGW 1791 (2417)
Q Consensus 1712 ~vvcY~~~W~~yr~~~~~~~~~~i~~~~cTHIiyaFa~i~~~~~~~~~~d~~~d~~~~~~~~i~~lk~~glKvllsIGGw 1791 (2417)
+.+|||.+|...- ......+.+++ +.+++|+..++.++.++... .........+.++.+|++|+|||++||||
T Consensus 2 ~~~~y~~~~~~~~-~~~~~~l~~~p-ds~D~v~lf~~~~~~~~~~~-----~~~~~~~~~~~i~~l~~kG~KVl~sigg~ 74 (255)
T cd06542 2 ISFGYFEVWDDKG-ASLQESLLNLP-DSVDMVSLFAANINLDAATA-----VQFLLTNKETYIRPLQAKGTKVLLSILGN 74 (255)
T ss_pred eEEEEEEecCCcC-cccccccccCC-CcceEEEEcccccCcccccc-----hhhhhHHHHHHHHHHhhCCCEEEEEECCC
Confidence 5789999998332 22334566665 66899988554444332110 01123456678889999999999999999
Q ss_pred CCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcchhhhHHHHHHHHHHhcCCCCcEE
Q psy4449 1792 NDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLL 1871 (2417)
Q Consensus 1792 ~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~~~~~llkeLr~~l~~~~~~L 1871 (2417)
..+. .| .+..+++.|++|++++++++++|||||||||||||.... .+....++++|+.||++||++|++++++|
T Consensus 75 ~~~~--~~-~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~---~~~~~~~~~~~~~lv~~Lr~~~~~~~kll 148 (255)
T cd06542 75 HLGA--GF-ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGK---NGTSQPSNEAFVRLIKELRKYMGPTDKLL 148 (255)
T ss_pred CCCC--Cc-cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCC---CCCCcchHHHHHHHHHHHHHHhCcCCcEE
Confidence 8753 34 346788999999999999999999999999999986311 11124688999999999999998878999
Q ss_pred EEEECCChhhhcccCCccccccCcceEEEEeccCCCCCCCCCCCCCcCCCCCCCCCCCccHHHHHHHHHHcCCCCCcEee
Q psy4449 1872 SAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKKVIF 1951 (2417)
Q Consensus 1872 s~av~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~aPLy~~~~~~~~~~nv~~~v~~~~~~G~p~~KLvl 1951 (2417)
++++.+..... +.+++.+++|||++|+||.++. ..+. + ..-...|+|++|+++
T Consensus 149 t~~~~~~~~~~----~~~~~~~~vDyv~~~~y~~~~~---~~~~----~----------------~~~~~~g~~~~k~i~ 201 (255)
T cd06542 149 TIDGYGQALSN----DGEEVSPYVDYVIYQYYGSSSS---STQR----N----------------WNTNSPKIPPEKMVY 201 (255)
T ss_pred EEEecCCchhc----CHHHHHHhCCEEEeeccCCCCc---cCCc----c----------------cccccCCCCHHHcee
Confidence 99987654322 6789999999999999986543 1100 0 011245899999999
Q ss_pred eccccceeeEeccCCCCCCCCccccCCCCCCccccCccchHHHHHHhhhcCCcEEEEcCCCceeeEEeeCCEEEEeCCHH
Q psy4449 1952 GMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKGDQWVGFDDQA 2031 (2417)
Q Consensus 1952 GiP~YG~~ftl~~~~~~~~~a~~~g~g~~g~~t~~~G~l~y~eic~~~~~~~~~~~~D~~~~~~py~~~~~~wv~Ydd~~ 2031 (2417)
|++|++.... ....
T Consensus 202 ~~~~~~~~~~------------------------------------------------------------------~~~~ 215 (255)
T cd06542 202 TESFEEENGG------------------------------------------------------------------NSGS 215 (255)
T ss_pred eeeeecccCC------------------------------------------------------------------Ccch
Confidence 9998753210 1223
Q ss_pred HHHHHHHHhhcC-CcceEEEEeccCccccCcCCCCCchHHHHHHHHh
Q psy4449 2032 MIHHKAEFVKYN-DLGGAMIWALDLDDFKNFCGCESYPLLKTINRVL 2077 (2417)
Q Consensus 2032 Si~~K~~~~k~~-gLgGvmiW~ld~DDf~g~Cg~~~~pLl~ai~~~l 2077 (2417)
++...++|+.+. +.||+|+|.++.|.. +|+++++.+.|
T Consensus 216 ~~~~~A~~~~~~~~~gG~~~y~~~~dy~--------~~~~~~~~~~~ 254 (255)
T cd06542 216 SAEQYARWTPAKGGKGGIGTYALDRDYY--------RPYDSAVSKAL 254 (255)
T ss_pred hHHHHHhcCcccCceEEEEEEecCCCcc--------ccchhhhhhhh
Confidence 455667777777 999999999998842 57888887765
No 40
>KOG4701|consensus
Probab=99.89 E-value=1.3e-21 Score=225.06 Aligned_cols=212 Identities=12% Similarity=0.229 Sum_probs=144.6
Q ss_pred CCeEEEEEeeccCCCCCCCCCCccccCCCCccEEEEEeEEecCCcc--eEecCCCCcccch-hHHHH---hhcCCcccCC
Q psy4449 382 EPKVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTL--SIQAGNPEADIDD-NFYQR---ISSSPLVTHG 455 (2417)
Q Consensus 382 ~~~vvcY~~~W~~~~~g~~~~~~~~i~~~~~THIiyaFa~~~~~~~--~~~~~d~~~d~~~-~~~~~---~~~lk~~~~p 455 (2417)
.-.+.+| |+++..|+..-....+....+..|+++|+.-.+.+. .+.+.+.-.|.+. .+.++ -.+++.++..
T Consensus 26 ~t~IA~Y---WGQN~aG~q~~Ls~yC~~~~yd~~~lsFL~~F~~~~Tp~LNfAn~Csd~~~~~l~~CTqi~~di~~CQS~ 102 (568)
T KOG4701|consen 26 QTAIAGY---WGQNLAGDQKRLSSYCQNTTYDAIILSFLIDFNVDGTPVLNFANLCSDSDTFSLKKCTQIETDIQVCQSN 102 (568)
T ss_pred ccceEEE---eccccccchhhhhhhhccCccceeeeehhhhcCCCCCceeehhcccCccccccccccchhhhHHHHHHhc
Confidence 3456777 888877887888888888899999999987655432 2222222222222 12222 2344456788
Q ss_pred CcEEEEEecCCCCCCCcchhhhccCHHHHHHHHHHHHHHhhhCC----------cceEEEEecCCCccCCcCCCCCcchh
Q psy4449 456 KVKILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFD----------FAGLHFDWNYPVCWQADCSKQHKADK 525 (2417)
Q Consensus 456 ~lKvllSiGGw~~s~g~~fs~~~s~~~~R~~fi~svv~~l~~yg----------fDGiDiDwEyP~~~~~~~~~~~~~d~ 525 (2417)
|+|||||+||..++.. +.+++..+.|++.+|+.+.... +||||||.|. ...
T Consensus 103 GiKVlLSLGG~~GnYs------~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE~-------------g~~ 163 (568)
T KOG4701|consen 103 GIKVLLSLGGYNGNYS------LNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIEK-------------GTN 163 (568)
T ss_pred CeEEEEeccCccccee------eccchhHHHHHHHHHHHhcCCccccCcccchhccceeeeeec-------------CCc
Confidence 9999999999987753 8899999999999999876543 8999999992 234
Q ss_pred hhHHHHHHHHHHHhccCC--cceEeeccch-hhhhhhcCCccccccccceEEEEeeccCCCCCCCcCCCCCCCCCCCCCC
Q psy4449 526 GNFVKLIQELKAEFDKHD--YSIAVGISGY-KEILEVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPY 602 (2417)
Q Consensus 526 ~nf~~ll~eLR~~f~~~~--~~Lsvav~~~-~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~sPL~~~~~~~~ 602 (2417)
..|..|.+.||+.|...+ |+|++|+... ++.. .+ -..-.+-+||+.|+.|+.. +-.... ..
T Consensus 164 ~~ysaLA~~L~~~Fa~~~r~yYLsaAPQCP~PD~~-~G--~aL~~~~fDf~~IQFYNN~-----------~CS~Ss--G~ 227 (568)
T KOG4701|consen 164 TAYSALAKRLLEIFASDPRRYYLSAAPQCPVPDHT-LG--KALSENSFDFLSIQFYNNS-----------TCSGSS--GS 227 (568)
T ss_pred chHHHHHHHHHHHHccCCceEEeccCCCCCCCchh-hh--hhhhccccceEEEEeecCC-----------Cccccc--Cc
Confidence 569999999999998765 9999998753 2211 11 1112346899999999841 111111 12
Q ss_pred CCCCHHHHHHHHHHhCCCCC-cEEEeeccc
Q psy4449 603 PNYNINTALKLIDELGGDKR-KIVIGVPFY 631 (2417)
Q Consensus 603 ~~~~v~~~v~~~~~~G~p~~-KLvlGvP~Y 631 (2417)
.+++.|.++++-...-..++ ||+||+|.-
T Consensus 228 ~Q~~fDsW~~ya~~~a~nKn~~lFLGLPg~ 257 (568)
T KOG4701|consen 228 RQSTFDAWVEYAEDSAYNKNTSLFLGLPGH 257 (568)
T ss_pred ccccHHHHHHHHhhhcccccceEEeeccCC
Confidence 36788988887655433332 499999974
No 41
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.88 E-value=6.8e-22 Score=238.18 Aligned_cols=203 Identities=16% Similarity=0.177 Sum_probs=135.0
Q ss_pred eEEEEEeeccCCCCCCCCCCccccCCCCccEEEEEeEEecCCcc--eEec-CCCCcccc---hhHHHHhhcCCcccCCCc
Q psy4449 384 KVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTL--SIQA-GNPEADID---DNFYQRISSSPLVTHGKV 457 (2417)
Q Consensus 384 ~vvcY~~~W~~~~~g~~~~~~~~i~~~~~THIiyaFa~~~~~~~--~~~~-~d~~~d~~---~~~~~~~~~lk~~~~p~l 457 (2417)
.|+.| |++... ..-.-+.++...++.|+++|++..+++. .+.+ ........ .++.+. ++.++.+++
T Consensus 2 ~v~vy---WGq~~~--~~~L~~~C~~~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~d---I~~cq~~G~ 73 (280)
T cd02877 2 NIAVY---WGQNSD--EGSLREYCDTGNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGAD---IKHCQSKGK 73 (280)
T ss_pred CeEEE---CCCCCC--CCCHHHHhCCCCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHH---HHHHHHCCC
Confidence 36667 776542 3445677888899999999999876521 1111 11111000 123333 444668899
Q ss_pred EEEEEecCCCCCCCcchhhhccCHHHHHHHHHHHHHHhh------------hCCcceEEEEecCCCccCCcCCCCCcchh
Q psy4449 458 KILIAIGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLR------------RFDFAGLHFDWNYPVCWQADCSKQHKADK 525 (2417)
Q Consensus 458 KvllSiGGw~~s~g~~fs~~~s~~~~R~~fi~svv~~l~------------~ygfDGiDiDwEyP~~~~~~~~~~~~~d~ 525 (2417)
|||||||||+.+.+ +++++.|++|++++++++. +++|||||||||+|..
T Consensus 74 KVlLSIGG~~~~~~------~~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~------------- 134 (280)
T cd02877 74 KVLLSIGGAGGSYS------LSSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP------------- 134 (280)
T ss_pred EEEEEccCCCCCcC------CCCHHHHHHHHHHHHHHhCCccccccccccccccccceEEecccCCc-------------
Confidence 99999999987643 3889999999999998763 5679999999999851
Q ss_pred hhHHHHHHHHHHHhccC---CcceEeeccchhhhhhhcCCccccc-cccceEEEEeeccCCCCCCCcCCCCCCCCCCCCC
Q psy4449 526 GNFVKLIQELKAEFDKH---DYSIAVGISGYKEILEVAYDFPALN-DHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEP 601 (2417)
Q Consensus 526 ~nf~~ll~eLR~~f~~~---~~~Lsvav~~~~~~~~~~yd~~~l~-~~vD~i~vMtYD~~g~w~~~tg~~sPL~~~~~~~ 601 (2417)
.+|..|+++||+.|++. .++||+|+..... ..+....|. .++|||+||+||..+- . .. ...
T Consensus 135 ~~~~~l~~~LR~~~~~~~~~~~~LTaAPq~~~~---d~~~~~~i~~~~~D~i~vqfYn~~~c-~-----~~----~~~-- 199 (280)
T cd02877 135 ENYDALAKRLRSLFASDPSKKYYLTAAPQCPYP---DASLGDAIATGLFDFIFVQFYNNPCC-S-----YA----SGN-- 199 (280)
T ss_pred cCHHHHHHHHHHHhhcccCCceEEEeccccCCc---chhHHHHHccCccCEEEEEEecCccc-c-----cc----ccc--
Confidence 57999999999999863 4999999876321 123344555 4999999999996432 0 00 000
Q ss_pred CCCCCHHHHHHHHHHhCCCC---CcEEEeeccc
Q psy4449 602 YPNYNINTALKLIDELGGDK---RKIVIGVPFY 631 (2417)
Q Consensus 602 ~~~~~v~~~v~~~~~~G~p~---~KLvlGvP~Y 631 (2417)
........+.|... ++. .||+||+|..
T Consensus 200 --~~~~~~~~~~w~~~-~~~~~~~kv~lGlpas 229 (280)
T cd02877 200 --ASGFNFNWDTWTSW-AKATSNAKVFLGLPAS 229 (280)
T ss_pred --cchhhhHHHHHHHh-cccCCCceEEEecccC
Confidence 00122233444433 444 8999999985
No 42
>KOG2091|consensus
Probab=99.87 E-value=6.8e-22 Score=224.21 Aligned_cols=295 Identities=20% Similarity=0.296 Sum_probs=226.7
Q ss_pred CCCEEEEEEecCcccccCCCCCCCCCCCCCCccEEEEEeEEecCCCcEEccCCCcchhhHHHHHHHHHHHhCCCEEEEEE
Q psy4449 1709 DEFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKGVKVTLAI 1788 (2417)
Q Consensus 1709 ~~~~vvcY~~~W~~yr~~~~~~~~~~i~~~~cTHIiyaFa~i~~~~~~~~~~d~~~d~~~~~~~~i~~lk~~glKvllsI 1788 (2417)
-+..+.+|.+.|+ ...|.+..|-.+++|||..-|..+...|..+... .-.|++..+++.++. +.++++++.-+
T Consensus 77 f~~~vLayVTPWN-----s~Gydvakifaskft~iSPVW~ql~~qgs~~~v~-G~hdid~gwiralRk-~~~~l~ivPR~ 149 (392)
T KOG2091|consen 77 FGGTVLAYVTPWN-----SHGYDVAKIFASKFTYISPVWLQLKDQGSDVGVY-GKHDIDPGWIRALRK-SGKDLHIVPRF 149 (392)
T ss_pred cCCceEEEecCcC-----ccchhHHHHHhcccceecchheeehhcCcceEEe-ecccCChHHHHHHHH-hCCCceeecee
Confidence 3567999999998 5678999999999999999999998765332221 235677777555543 33457766443
Q ss_pred --cCCCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEe-ecCCCCccCCCCCCCcchhhhHHHHHHHHHHhcC
Q psy4449 1789 --GGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLD-WEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN 1865 (2417)
Q Consensus 1789 --GGw~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiD-wEyP~~~~~~~~~~~~~d~~~~~~llkeLr~~l~ 1865 (2417)
--|. +..|..++.+++.|++..+.++++.+++||||+.|+ |.--. +...| .....|++.|.++|+
T Consensus 150 ~fd~~~---~~d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a--------~~i~d-~~al~~v~hl~k~Lh 217 (392)
T KOG2091|consen 150 YFDEFT---SADLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLA--------DVIAD-KDALELVEHLGKALH 217 (392)
T ss_pred hhhhcc---chHHHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHHH--------HHHhh-hHHHHHHHHHHHHHH
Confidence 3343 356889999999999999999999999999999998 43100 01122 345568889999999
Q ss_pred CCCcEEEEEECCChhhh-c-----ccCCccccccCcceEEEEeccCCCCCCCCCCCCCcCCCCCCCCCCCccHHHHHHHH
Q psy4449 1866 PHDLLLSAAVSPSKAVI-D-----NAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYW 1939 (2417)
Q Consensus 1866 ~~~~~Ls~av~~~~~~~-~-----~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~aPLy~~~~~~~~~~nv~~~v~~~ 1939 (2417)
+..+.+...+||..... . ..-++..|...+|.+.+|||||.+. ..+|++||+++ ++.++++.
T Consensus 218 kq~l~~iLvvPp~~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~--~~pg~nap~~w----------i~~~l~~l 285 (392)
T KOG2091|consen 218 KQELQAILVVPPVIEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLV--QGPGPNAPLEW----------IRHCLHHL 285 (392)
T ss_pred HhheEEEEEeCCCCcCCCCCcCcCCHHHHHHHHHhhhheeEEEeecccc--cCCCCCCCHHH----------HHHHHHHh
Confidence 88888888888832211 1 1124677888999999999999874 56899999986 88888877
Q ss_pred HHcCCCCCcEeeeccccceeeEeccCCCCCCCCccccCCCCCCccccCccchHHHHHHhhhcCCcEEEEcCCCceeeEEe
Q psy4449 1940 VSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAF 2019 (2417)
Q Consensus 1940 ~~~G~p~~KLvlGiP~YG~~ftl~~~~~~~~~a~~~g~g~~g~~t~~~G~l~y~eic~~~~~~~~~~~~D~~~~~~py~~ 2019 (2417)
.-...-+.||+|||-|||..|.+.+ ..|.++-......++...-...||+++.+..|.|
T Consensus 286 ~~~s~~r~KiLlGlNFYG~d~~~gd---------------------g~~~IT~~rYL~lLk~~k~~~~~Dees~EH~f~~ 344 (392)
T KOG2091|consen 286 GGSSAKRPKILLGLNFYGNDFNLGD---------------------GGEAITAKRYLQLLKGEKSVFKFDEESKEHFFEY 344 (392)
T ss_pred CCccccccceeEeeeccccccccCC---------------------CCCceeHHHHHHHHhccCcceeeccccchhheee
Confidence 6555667999999999999997521 1233555667778888888999999999989998
Q ss_pred e----CCEEEEeCCHHHHHHHHHHhhcCCcceEEEEeccCc
Q psy4449 2020 K----GDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 2056 (2417)
Q Consensus 2020 ~----~~~wv~Ydd~~Si~~K~~~~k~~gLgGvmiW~ld~D 2056 (2417)
+ +++.|.|.+..||..+++++++.|. ||.||++++-
T Consensus 345 k~n~~gkhivfyPTL~Sl~~Ri~lA~~~gv-gISIWe~GqG 384 (392)
T KOG2091|consen 345 KRNDDGKHIVFYPTLTSLELRIELARELGV-GISIWEYGQG 384 (392)
T ss_pred eccCCCceEEEecchHhHHHHHHHHHHhCC-ceEeeeccCc
Confidence 6 3689999999999999999999999 8999999873
No 43
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.86 E-value=3.6e-21 Score=233.28 Aligned_cols=207 Identities=16% Similarity=0.157 Sum_probs=146.0
Q ss_pred CeEEEEEeeccCCCCCCCCCCccccCCCCccEEEEEeEEecCCcceEecCCCCcccchhHHHHhhcCCcccCCCcEEEEE
Q psy4449 383 PKVVCYVTNWSGSRKSDGKFVPENIDYKLCTHIVYAFASLDPNTLSIQAGNPEADIDDNFYQRISSSPLVTHGKVKILIA 462 (2417)
Q Consensus 383 ~~vvcY~~~W~~~~~g~~~~~~~~i~~~~~THIiyaFa~~~~~~~~~~~~d~~~d~~~~~~~~~~~lk~~~~p~lKvllS 462 (2417)
++.+|||.+|.... ......+.+++ +.+++|+..++.++.++... . .-......+.+..++ .+|+|||+|
T Consensus 1 ~~~~~y~~~~~~~~-~~~~~~l~~~p-ds~D~v~lf~~~~~~~~~~~---~--~~~~~~~~~~i~~l~---~kG~KVl~s 70 (255)
T cd06542 1 PISFGYFEVWDDKG-ASLQESLLNLP-DSVDMVSLFAANINLDAATA---V--QFLLTNKETYIRPLQ---AKGTKVLLS 70 (255)
T ss_pred CeEEEEEEecCCcC-cccccccccCC-CcceEEEEcccccCcccccc---h--hhhhHHHHHHHHHHh---hCCCEEEEE
Confidence 36789999998543 33345567777 66899988555554332100 0 001122333344443 569999999
Q ss_pred ecCCCCCCCcchhhhccCHHHHHHHHHHHHHHhhhCCcceEEEEecCCCccCCcCCCCCcchhhhHHHHHHHHHHHhccC
Q psy4449 463 IGGWTDSSGEKYSQLISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHKADKGNFVKLIQELKAEFDKH 542 (2417)
Q Consensus 463 iGGw~~s~g~~fs~~~s~~~~R~~fi~svv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~nf~~ll~eLR~~f~~~ 542 (2417)
||||..+. .| ..+.+++.|++|++++++++.+|||||||||||||.... ....+.+.++|..||++||++|++.
T Consensus 71 igg~~~~~--~~-~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~---~~~~~~~~~~~~~lv~~Lr~~~~~~ 144 (255)
T cd06542 71 ILGNHLGA--GF-ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGK---NGTSQPSNEAFVRLIKELRKYMGPT 144 (255)
T ss_pred ECCCCCCC--Cc-cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCC---CCCCcchHHHHHHHHHHHHHHhCcC
Confidence 99998764 34 346788999999999999999999999999999996321 1113468899999999999999876
Q ss_pred CcceEeeccchhhhhhhcCCccccccccceEEEEeeccCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCC
Q psy4449 543 DYSIAVGISGYKEILEVAYDFPALNDHVEFMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPNYNINTALKLIDELGGDKR 622 (2417)
Q Consensus 543 ~~~Lsvav~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~sPL~~~~~~~~~~~~v~~~v~~~~~~G~p~~ 622 (2417)
+++|++++.+..... +.+++.+++||+++|+||.++. ..+- . ......|+|++
T Consensus 145 ~kllt~~~~~~~~~~----~~~~~~~~vDyv~~~~y~~~~~---~~~~---~-----------------~~~~~~g~~~~ 197 (255)
T cd06542 145 DKLLTIDGYGQALSN----DGEEVSPYVDYVIYQYYGSSSS---STQR---N-----------------WNTNSPKIPPE 197 (255)
T ss_pred CcEEEEEecCCchhc----CHHHHHHhCCEEEeeccCCCCc---cCCc---c-----------------cccccCCCCHH
Confidence 788888876543321 6788999999999999985432 1110 0 11124689999
Q ss_pred cEEEeecccc
Q psy4449 623 KIVIGVPFYG 632 (2417)
Q Consensus 623 KLvlGvP~YG 632 (2417)
|+++|++|++
T Consensus 198 k~i~~~~~~~ 207 (255)
T cd06542 198 KMVYTESFEE 207 (255)
T ss_pred Hceeeeeeec
Confidence 9999999985
No 44
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.85 E-value=3e-20 Score=224.04 Aligned_cols=183 Identities=24% Similarity=0.259 Sum_probs=127.7
Q ss_pred CCCccEEEEEeEEecCCCcE----EccCCCcch--hhHHHHHHHHHHHhCCCEEEEEEcCCCCCCCcchhHhhcCHHHHH
Q psy4449 1737 SDLCTHVIYGFAVLDTDQLV----IKPHDTWAD--LDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARS 1810 (2417)
Q Consensus 1737 ~~~cTHIiyaFa~i~~~~~~----~~~~d~~~d--~~~~~~~~i~~lk~~glKvllsIGGw~~s~~~~fs~~~~~~~~R~ 1810 (2417)
-..++.|+.+|+..-.++.. +..+..... .-.++.++|+.+|++|+|||||||||..+. . +.+++.|+
T Consensus 22 ~~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~G~KVlLSIGG~~~~~--~----~~s~~~a~ 95 (280)
T cd02877 22 TGNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSKGKKVLLSIGGAGGSY--S----LSSDADAK 95 (280)
T ss_pred CCCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHHCCCEEEEEccCCCCCc--C----CCCHHHHH
Confidence 34689999999876543211 111111000 113688999999999999999999998652 2 37899999
Q ss_pred HHHHHHHHHHH------------HcCCCeEEEeecCCCCccCCCCCCCcchhhhHHHHHHHHHHhcCC---CCcEEEEEE
Q psy4449 1811 KFIAHVVNFIL------------EHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNP---HDLLLSAAV 1875 (2417)
Q Consensus 1811 ~Fi~siv~~l~------------~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~~~~~llkeLr~~l~~---~~~~Ls~av 1875 (2417)
+|+++|++++. +++|||||||||+|. ..+|..|+++||+.++. ++++||+|+
T Consensus 96 ~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~-------------~~~~~~l~~~LR~~~~~~~~~~~~LTaAP 162 (280)
T cd02877 96 DFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGS-------------PENYDALAKRLRSLFASDPSKKYYLTAAP 162 (280)
T ss_pred HHHHHHHHHhCCccccccccccccccccceEEecccCC-------------ccCHHHHHHHHHHHhhcccCCceEEEecc
Confidence 99999998762 577999999999985 16899999999999975 569999995
Q ss_pred CCChhhhcccCCccccc-cCcceEEEEeccCCCCCCCCCCCCCcCCCCCCCCCCCccHHHHHHHHHHcCCCC---CcEee
Q psy4449 1876 SPSKAVIDNAYDIPVMS-ENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADR---KKVIF 1951 (2417)
Q Consensus 1876 ~~~~~~~~~~yd~~~l~-~~vD~i~vMtYD~~g~w~~~tg~~aPLy~~~~~~~~~~nv~~~v~~~~~~G~p~---~KLvl 1951 (2417)
.... ...+....|. .++|||+||+||..+- . +.... .....+..+.|+.. ++. .||+|
T Consensus 163 q~~~---~d~~~~~~i~~~~~D~i~vqfYn~~~c-------~---~~~~~----~~~~~~~~~~w~~~-~~~~~~~kv~l 224 (280)
T cd02877 163 QCPY---PDASLGDAIATGLFDFIFVQFYNNPCC-------S---YASGN----ASGFNFNWDTWTSW-AKATSNAKVFL 224 (280)
T ss_pred ccCC---cchhHHHHHccCccCEEEEEEecCccc-------c---ccccc----cchhhhHHHHHHHh-cccCCCceEEE
Confidence 5421 1224445555 4999999999996542 0 00000 11233455667655 555 89999
Q ss_pred ecccc
Q psy4449 1952 GMPMY 1956 (2417)
Q Consensus 1952 GiP~Y 1956 (2417)
|||..
T Consensus 225 Glpas 229 (280)
T cd02877 225 GLPAS 229 (280)
T ss_pred ecccC
Confidence 99954
No 45
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.80 E-value=3.6e-19 Score=216.12 Aligned_cols=157 Identities=17% Similarity=0.169 Sum_probs=121.2
Q ss_pred CCCccEEEEEeEEecCCCcEEccCCCcchhhHHHHHHHHHHHhCCCEEEEEEcCCCCCCCcchhHhhcCHHHHHHHHHHH
Q psy4449 1737 SDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHV 1816 (2417)
Q Consensus 1737 ~~~cTHIiyaFa~i~~~~~~~~~~d~~~d~~~~~~~~i~~lk~~glKvllsIGGw~~s~~~~fs~~~~~~~~R~~Fi~si 1816 (2417)
...|+||++||+....++..........+....+.++|+.||++|+||+||||||+.+ .| ..+...|++|++++
T Consensus 23 ~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~---~~---~~~~~~~~~~~~a~ 96 (294)
T cd06543 23 ATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGT---PL---ATSCTSADQLAAAY 96 (294)
T ss_pred HcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCC---cc---ccCcccHHHHHHHH
Confidence 3579999999998875443221111111124567889999999999999999999864 23 33788999999999
Q ss_pred HHHHHHcCCCeEEEeecCCCCccCCCCCCCcchhhhHHHHHHHHHHhcCCCCcEEEEEECCChhhhc-ccCCcccccc--
Q psy4449 1817 VNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID-NAYDIPVMSE-- 1893 (2417)
Q Consensus 1817 v~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~~~~~llkeLr~~l~~~~~~Ls~av~~~~~~~~-~~yd~~~l~~-- 1893 (2417)
.++|++|+|||||||||+|.. ......+++..+|++|++++. ++.|+++++..+..+. .++++.+.++
T Consensus 97 ~~~i~~y~~dgiDfDiE~~~~-------~d~~~~~~~~~al~~Lq~~~p--~l~vs~Tlp~~p~gl~~~g~~~l~~a~~~ 167 (294)
T cd06543 97 QKVIDAYGLTHLDFDIEGGAL-------TDTAAIDRRAQALALLQKEYP--DLKISFTLPVLPTGLTPDGLNVLEAAAAN 167 (294)
T ss_pred HHHHHHhCCCeEEEeccCCcc-------ccchhHHHHHHHHHHHHHHCC--CcEEEEecCCCCCCCChhHHHHHHHHHHc
Confidence 999999999999999998751 112234899999999999994 6888888876554443 5677777777
Q ss_pred --CcceEEEEeccCCCC
Q psy4449 1894 --NLDWISVMTYDYHGQ 1908 (2417)
Q Consensus 1894 --~vD~i~vMtYD~~g~ 1908 (2417)
.+|+||||+|||++.
T Consensus 168 Gv~~d~VNiMtmDyg~~ 184 (294)
T cd06543 168 GVDLDTVNIMTMDYGSS 184 (294)
T ss_pred CCCcceeeeeeecCCCC
Confidence 999999999999874
No 46
>KOG2091|consensus
Probab=99.73 E-value=3.7e-17 Score=186.10 Aligned_cols=287 Identities=16% Similarity=0.284 Sum_probs=209.1
Q ss_pred CCeEEEEEccCCcccCCCcccccCCCCCCCccEEEEeeeeecCCCccccccCccchhhhchhhhhhhccccCCCceEEEE
Q psy4449 12 KHQVVCYVEAKSAYRHRPATFNVKNVIPQTCTHVIYAYAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLA 91 (2417)
Q Consensus 12 ~~~vvCy~~~~~~~r~~~~~f~~~~l~~~~CTHviY~~a~ld~~~~~~~~~~~~~D~~~~~y~~~~~LK~~~P~lkvlLs 91 (2417)
.--|++|+++|. ...|.++.|.....|||-..|+.|...+ .........|+++++. +.||++++.|+++-=
T Consensus 78 ~~~vLayVTPWN-----s~Gydvakifaskft~iSPVW~ql~~qg-s~~~v~G~hdid~gwi---ralRk~~~~l~ivPR 148 (392)
T KOG2091|consen 78 GGTVLAYVTPWN-----SHGYDVAKIFASKFTYISPVWLQLKDQG-SDVGVYGKHDIDPGWI---RALRKSGKDLHIVPR 148 (392)
T ss_pred CCceEEEecCcC-----ccchhHHHHHhcccceecchheeehhcC-cceEEeecccCChHHH---HHHHHhCCCceeece
Confidence 447999999995 5569999999999999999999998776 5555667788887554 456677888886544
Q ss_pred e------cccccccccChHHHHHHHHHHHHHHHhcCCCceEEE-ecCCCCCCCCCchhhhhhhhHHHHHHHHHHHHHHhh
Q psy4449 92 V------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLN-VKDPALNDEDDDDLESIANERSDFSTFIQELSSTLR 164 (2417)
Q Consensus 92 V------Gg~f~~~~~~~~~R~~fi~siv~~l~~~~fDGidl~-W~~p~~~~~~~~~~~~~~~~r~~f~~ll~eL~~~l~ 164 (2417)
+ +..+..++.+...|++..+-++.+.++++|||+.|+ |. .+..--.+ -..-.|+++|.++|+
T Consensus 149 ~~fd~~~~~d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevws----------q~a~~i~d-~~al~~v~hl~k~Lh 217 (392)
T KOG2091|consen 149 FYFDEFTSADLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWS----------QLADVIAD-KDALELVEHLGKALH 217 (392)
T ss_pred ehhhhccchHHHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHH----------HHHHHHhh-hHHHHHHHHHHHHHH
Confidence 3 335677899999999999999999999999999995 33 11111122 234568889999999
Q ss_pred cCCcEEEEEecCccccccc------ccCHhhhccccceEEEEeccCCCCCCCCCCCCCCCCCCcccccccccccCHHHHH
Q psy4449 165 RNNYQLTLTSPGVIDRKTS------LVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAV 238 (2417)
Q Consensus 165 ~~~~~Lsv~v~p~~~~~~~------~yD~~~l~~~vD~v~l~~yd~~~~~~~~~p~~~~~~spl~~~~~~~~~~~v~~~v 238 (2417)
++.+++.++|||..+.... .=|+..|...+|.+.||+|||.... .++.++| ..+|+.++
T Consensus 218 kq~l~~iLvvPp~~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~~------~pg~nap---------~~wi~~~l 282 (392)
T KOG2091|consen 218 KQELQAILVVPPVIEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLVQ------GPGPNAP---------LEWIRHCL 282 (392)
T ss_pred HhheEEEEEeCCCCcCCCCCcCcCCHHHHHHHHHhhhheeEEEeeccccc------CCCCCCC---------HHHHHHHH
Confidence 9999999999994322111 2256889999999999999997432 3445555 67889999
Q ss_pred HHHHHhCCCCccEEEeccccceeeeecccCCCCCCCcccCCCCCCcccccCCchhHHHHHhhhccCccc-cccCCCCCce
Q psy4449 239 YNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWR-HFTDSNGEPF 317 (2417)
Q Consensus 239 ~~~l~~g~~~sKivlGip~yG~s~~l~~~~~~~~g~p~~Gpg~~g~~t~~~G~lsy~EIC~~~~~~~w~-~~~d~~~~py 317 (2417)
.++.-.-.-+.||++||.|||..|.+ .+ .|.|+. -...-+.++...-. .++.+.+.-+
T Consensus 283 ~~l~~~s~~r~KiLlGlNFYG~d~~~-gd----g~~~IT----------------~~rYL~lLk~~k~~~~~Dees~EH~ 341 (392)
T KOG2091|consen 283 HHLGGSSAKRPKILLGLNFYGNDFNL-GD----GGEAIT----------------AKRYLQLLKGEKSVFKFDEESKEHF 341 (392)
T ss_pred HHhCCccccccceeEeeecccccccc-CC----CCCcee----------------HHHHHHHHhccCcceeeccccchhh
Confidence 98766667789999999999999996 11 111221 22333333333222 3333333322
Q ss_pred e-Ee----cCeEEEccCchhHHHHHHHHHhcCCcceEeecccc
Q psy4449 318 M-VK----KDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDL 355 (2417)
Q Consensus 318 ~-~~----~~~wV~Yed~~Sv~~K~~y~~~~glGGv~iw~l~~ 355 (2417)
. ++ +..-|.|..-.|+..+++.|++.|.| |+||+++.
T Consensus 342 f~~k~n~~gkhivfyPTL~Sl~~Ri~lA~~~gvg-ISIWe~Gq 383 (392)
T KOG2091|consen 342 FEYKRNDDGKHIVFYPTLTSLELRIELARELGVG-ISIWEYGQ 383 (392)
T ss_pred eeeeccCCCceEEEecchHhHHHHHHHHHHhCCc-eEeeeccC
Confidence 2 22 24589999999999999999999996 99999864
No 47
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=1.4e-16 Score=176.16 Aligned_cols=222 Identities=22% Similarity=0.338 Sum_probs=144.4
Q ss_pred CCCCEEEEEEecCcc-----cccCCCC-CCCCCCCCCCccEEEEEeEEecCCCcEEccCCCcchhhHHHHHHHHHHHhCC
Q psy4449 1708 KDEFKIVCYFTNWAW-----YRQSGGK-YLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKG 1781 (2417)
Q Consensus 1708 ~~~~~vvcY~~~W~~-----yr~~~~~-~~~~~i~~~~cTHIiyaFa~i~~~~~~~~~~d~~~d~~~~~~~~i~~lk~~g 1781 (2417)
...+++||||+||-. |.++... +-.++. +..++.+..+|..-.. .+..+.++.+.+.+|.+++.+|.++|
T Consensus 23 ~~~KvLvGyWHnw~sgaaDgyq~gs~adial~d~-~~~ynvv~V~Fmk~~g---~iptf~P~~~~daeFr~~v~aLnaeG 98 (332)
T COG3469 23 ISNKVLVGYWHNWKSGAADGYQQGSSADIALADT-PRNYNVVTVSFMKGAG---DIPTFKPYNDPDAEFRAQVGALNAEG 98 (332)
T ss_pred cccceEEEeeecccccccccccccceeeeEeccC-CcccceEEEEEeecCC---CCcccCcCCCCHHHHHHHHHHhhccC
Confidence 345699999999963 2221110 112222 3456777777764433 45667788888999999999999999
Q ss_pred CEEEEEEcCCCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcchhhhHHHHHHHHH
Q psy4449 1782 VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELR 1861 (2417)
Q Consensus 1782 lKvllsIGGw~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~~~~~llkeLr 1861 (2417)
.-||||+||...... + ....-+.|+++|++++++|||||+|||.|--. ....+.+.-..+++|.+|
T Consensus 99 kavllsLGGAdghIe------L-~~~qE~~fv~eiirlietyGFDGLDiDLEq~a-------i~~~dnq~v~p~alk~vk 164 (332)
T COG3469 99 KAVLLSLGGADGHIE------L-KAGQEQAFVNEIIRLIETYGFDGLDIDLEQSA-------ILAADNQTVIPAALKAVK 164 (332)
T ss_pred cEEEEEccCccceEE------e-ccchHHHHHHHHHHHHHHhCCCccccchhhhh-------hhhcCCeeehHHHHHHHH
Confidence 999999999765321 2 23337899999999999999999999999321 112233446778888888
Q ss_pred HhcCCC--CcEEEEEECCChhhhc--ccC--CccccccCcceEEEEeccCCCCCCCCCCCCCcCCCCCCCCCCCccHHHH
Q psy4449 1862 AAFNPH--DLLLSAAVSPSKAVID--NAY--DIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYS 1935 (2417)
Q Consensus 1862 ~~l~~~--~~~Ls~av~~~~~~~~--~~y--d~~~l~~~vD~i~vMtYD~~g~w~~~tg~~aPLy~~~~~~~~~~nv~~~ 1935 (2417)
+..+.. +++|+||. ....+. ..| .+.+|..|.|||+++-|+..|.-...+..+++.-. .+ .-+...
T Consensus 165 ~hyk~~Gk~f~itMAP--EfPYl~~~gaY~pyin~l~~~yD~i~pQlYNqGGdg~w~~~~nawi~q--~n----d~~kes 236 (332)
T COG3469 165 DHYKNQGKNFFITMAP--EFPYLQGWGAYIPYINELRDYYDFIAPQLYNQGGDGNWVTESNAWIAQ--NN----DMVKES 236 (332)
T ss_pred HHHHhcCCceEEEecC--CCceecCCcccchHHHHHhhHHhhhhHHHhcCCCCCCCcCcccccccc--cc----HHHHHh
Confidence 888764 46777763 322221 122 36778889999999999988752222333333321 10 012223
Q ss_pred HHHHHH----c------CCCCCcEeeeccc
Q psy4449 1936 LHYWVS----H------GADRKKVIFGMPM 1955 (2417)
Q Consensus 1936 v~~~~~----~------G~p~~KLvlGiP~ 1955 (2417)
.-|++. . .+|.+|+++|+|.
T Consensus 237 fly~~~~slanGtr~f~~ipa~k~aiGLPs 266 (332)
T COG3469 237 FLYYLTFSLANGTRGFEKIPADKFAIGLPS 266 (332)
T ss_pred HHHHhhhhhhcCcccceecccceeEEecCC
Confidence 333322 1 2789999999993
No 48
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.71 E-value=3.4e-17 Score=199.05 Aligned_cols=154 Identities=16% Similarity=0.149 Sum_probs=119.4
Q ss_pred CCceEEEEeeeeecCCCcceeeccc--hhhhhhHHHHHHHHhHhcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHH
Q psy4449 1371 KLYVTLQTGLGTDQEKENTFLKISE--LTYVHILFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEH 1448 (2417)
Q Consensus 1371 ~~~thi~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~v~~~k~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~ 1448 (2417)
..|+||+++|+.. + ++....... ..+....+.++|..+|++|+||++|||||+.. .+..+...|++|+++
T Consensus 24 ~g~~~v~lAFi~~-~-~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~------~~~~~~~~~~~~~~a 95 (294)
T cd06543 24 TGVKAFTLAFIVA-S-GGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGT------PLATSCTSADQLAAA 95 (294)
T ss_pred cCCCEEEEEEEEc-C-CCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCC------ccccCcccHHHHHHH
Confidence 5799999999998 3 232222211 11225667889999999999999999999853 233478899999999
Q ss_pred HHHHHHHcCCCccccccCCccccccccCCCCCChhhHHHHHHHHHHHhcCCCceeEEEeecCChhhhc-cccchhhhcc-
Q psy4449 1449 VVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVIN-AAYDVKALSE- 1526 (2417)
Q Consensus 1449 iv~~l~~ygfDGvDlD~E~p~~~~~~~~~~~~~d~~~~~~fv~eL~~~l~~~~~~ls~av~p~~~~~~-~~~d~~~l~~- 1526 (2417)
+.++|++|||||||||||+|.. ......+++..+|++|++++. ++.|+++++..+.... .++++.+.++
T Consensus 96 ~~~~i~~y~~dgiDfDiE~~~~-------~d~~~~~~~~~al~~Lq~~~p--~l~vs~Tlp~~p~gl~~~g~~~l~~a~~ 166 (294)
T cd06543 96 YQKVIDAYGLTHLDFDIEGGAL-------TDTAAIDRRAQALALLQKEYP--DLKISFTLPVLPTGLTPDGLNVLEAAAA 166 (294)
T ss_pred HHHHHHHhCCCeEEEeccCCcc-------ccchhHHHHHHHHHHHHHHCC--CcEEEEecCCCCCCCChhHHHHHHHHHH
Confidence 9999999999999999998641 112234899999999999993 6777777766544444 6788888888
Q ss_pred ---cCceEEeeecccCCC
Q psy4449 1527 ---SLDWISVMTYDYHGQ 1541 (2417)
Q Consensus 1527 ---~vD~i~vMtYD~~g~ 1541 (2417)
.+|+||||+|||++.
T Consensus 167 ~Gv~~d~VNiMtmDyg~~ 184 (294)
T cd06543 167 NGVDLDTVNIMTMDYGSS 184 (294)
T ss_pred cCCCcceeeeeeecCCCC
Confidence 999999999999863
No 49
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=1.5e-16 Score=176.02 Aligned_cols=190 Identities=17% Similarity=0.310 Sum_probs=142.5
Q ss_pred ceeEEEEecccccccCCC-CcccccCCCcccccCCceEEEEeeeeecCCCcceeeccchhhhhhHHHHHHHHhHhcCCEE
Q psy4449 1339 YFKIVCYFTNWAWYRPGK-GKYVLKKVPWINILKLYVTLQTGLGTDQEKENTFLKISELTYVHILFYERVVTLKKKGVKV 1417 (2417)
Q Consensus 1339 ~~~vv~y~~~w~~~~~~~-~~~~~~~~~~~~~~~~~thi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~g~Kv 1417 (2417)
++++||||+||..--.+. -.-...||.-++.+.-+..+..+|..- . +.+..+.++++.|.+|.+.|.+|+++|.-|
T Consensus 25 ~KvLvGyWHnw~sgaaDgyq~gs~adial~d~~~~ynvv~V~Fmk~-~--g~iptf~P~~~~daeFr~~v~aLnaeGkav 101 (332)
T COG3469 25 NKVLVGYWHNWKSGAADGYQQGSSADIALADTPRNYNVVTVSFMKG-A--GDIPTFKPYNDPDAEFRAQVGALNAEGKAV 101 (332)
T ss_pred cceEEEeeecccccccccccccceeeeEeccCCcccceEEEEEeec-C--CCCcccCcCCCCHHHHHHHHHHhhccCcEE
Confidence 459999999998533222 122566777777888999999999877 2 344555569999999999999999999999
Q ss_pred EEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccCCccccccccCCCCCChhhHHHHHHHHHHHhc
Q psy4449 1418 SLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAF 1497 (2417)
Q Consensus 1418 ~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~~~~~~~~~d~~~~~~fv~eL~~~l 1497 (2417)
+|++||... +.-++ ....+.|+++|+++|++|||||+|||+|.-. ..-...+.....++|.+++..
T Consensus 102 llsLGGAdg------hIeL~-~~qE~~fv~eiirlietyGFDGLDiDLEq~a-------i~~~dnq~v~p~alk~vk~hy 167 (332)
T COG3469 102 LLSLGGADG------HIELK-AGQEQAFVNEIIRLIETYGFDGLDIDLEQSA-------ILAADNQTVIPAALKAVKDHY 167 (332)
T ss_pred EEEccCccc------eEEec-cchHHHHHHHHHHHHHHhCCCccccchhhhh-------hhhcCCeeehHHHHHHHHHHH
Confidence 999999643 22233 3337899999999999999999999999321 223444557888999999888
Q ss_pred CCCceeEEEeecCChhhhcc-c---cchhhhcccCceEEeeecccCCC--cCCC
Q psy4449 1498 KPHGLLLSAAVSPSKQVINA-A---YDVKALSESLDWISVMTYDYHGQ--WDKK 1545 (2417)
Q Consensus 1498 ~~~~~~ls~av~p~~~~~~~-~---~d~~~l~~~vD~i~vMtYD~~g~--w~~~ 1545 (2417)
+..|+-+.+.+.|+.++... | ..+.+|..|.|||+++-|+..|. |...
T Consensus 168 k~~Gk~f~itMAPEfPYl~~~gaY~pyin~l~~~yD~i~pQlYNqGGdg~w~~~ 221 (332)
T COG3469 168 KNQGKNFFITMAPEFPYLQGWGAYIPYINELRDYYDFIAPQLYNQGGDGNWVTE 221 (332)
T ss_pred HhcCCceEEEecCCCceecCCcccchHHHHHhhHHhhhhHHHhcCCCCCCCcCc
Confidence 87776666666666555432 1 23578999999999999999774 5444
No 50
>KOG4701|consensus
Probab=99.18 E-value=1.4e-09 Score=126.84 Aligned_cols=151 Identities=21% Similarity=0.373 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhCCCEEEEEEcCCCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcC----------CCeEEEeecCCCCc
Q psy4449 1769 KFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHN----------FDGLDLDWEYPKCW 1838 (2417)
Q Consensus 1769 ~~~~~i~~lk~~glKvllsIGGw~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~yg----------fDGiDiDwEyP~~~ 1838 (2417)
++-.+|+.++.+|+||||++||.++. | .+++.+..+.|++.+++....-. +||+|||.|-
T Consensus 91 qi~~di~~CQS~GiKVlLSLGG~~Gn----Y--s~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE~---- 160 (568)
T KOG4701|consen 91 QIETDIQVCQSNGIKVLLSLGGYNGN----Y--SLNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIEK---- 160 (568)
T ss_pred hhhhHHHHHHhcCeEEEEeccCcccc----e--eeccchhHHHHHHHHHHHhcCCccccCcccchhccceeeeeec----
Confidence 56788999999999999999998764 2 37888999999999998764322 8999999992
Q ss_pred cCCCCCCCcchhhhHHHHHHHHHHhcCC--CCcEEEEEECCChhhhcccCCccccccCcceEEEEeccCCCCCCCCCCCC
Q psy4449 1839 QVDCKQGPASDKQGFADLIKELRAAFNP--HDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHV 1916 (2417)
Q Consensus 1839 ~~~~~~~~~~d~~~~~~llkeLr~~l~~--~~~~Ls~av~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~ 1916 (2417)
.....|-.|.+.||..|.. +++.|++|...... +....-..-.+-+||+.|+.|+..
T Consensus 161 ---------g~~~~ysaLA~~L~~~Fa~~~r~yYLsaAPQCP~P--D~~~G~aL~~~~fDf~~IQFYNN~---------- 219 (568)
T KOG4701|consen 161 ---------GTNTAYSALAKRLLEIFASDPRRYYLSAAPQCPVP--DHTLGKALSENSFDFLSIQFYNNS---------- 219 (568)
T ss_pred ---------CCcchHHHHHHHHHHHHccCCceEEeccCCCCCCC--chhhhhhhhccccceEEEEeecCC----------
Confidence 2346788999999999964 55888887543322 111111111346899999999952
Q ss_pred CcCCCCCCCCCCCccHHHHHHHHHHcCCCCCc---Eeeeccc
Q psy4449 1917 APMYALPNDTTPTFNANYSLHYWVSHGADRKK---VIFGMPM 1955 (2417)
Q Consensus 1917 aPLy~~~~~~~~~~nv~~~v~~~~~~G~p~~K---LvlGiP~ 1955 (2417)
+... .....+++.|.+++|... +.++| |+||+|.
T Consensus 220 -~CS~--SsG~~Q~~fDsW~~ya~~--~a~nKn~~lFLGLPg 256 (568)
T KOG4701|consen 220 -TCSG--SSGSRQSTFDAWVEYAED--SAYNKNTSLFLGLPG 256 (568)
T ss_pred -Cccc--ccCcccccHHHHHHHHhh--hcccccceEEeeccC
Confidence 1111 111235677777665543 55565 9999994
No 51
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []. It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.
Probab=98.42 E-value=2.3e-07 Score=84.03 Aligned_cols=48 Identities=27% Similarity=0.800 Sum_probs=37.8
Q ss_pred CCceecCCCCCCceEEeeCCeEEEEecCCCceeccCCCccCCCCC-Ccc
Q psy4449 985 SGEYYPVDGECGSYYRCILGTLKKESCAPGLHWNKVNKICDWPKS-AKC 1032 (2417)
Q Consensus 985 ~~~~~~~p~dC~~yy~C~~g~~~~~~Cp~G~~Fn~~~~~C~~~~~-~~C 1032 (2417)
..++++++.+|++||+|.+|.++.+.||.|++||+..+.|+++.. +.|
T Consensus 5 ~~~~~~~~~~C~~Y~~C~~g~~~~~~C~~g~~fd~~~~~C~~~~~~~~C 53 (53)
T PF01607_consen 5 GDGFYPHPDDCRKYYQCVNGQAVEQRCPEGLYFDPSSQRCVPPSNVVQC 53 (53)
T ss_dssp SSEEE--SS-SSEEEEEETTEEEEEE-TTS-EE-TTTSSEE-TTT-TT-
T ss_pred CCeeEeCCCCCCEEEEeeCCcEECCCCcCCCEECcCcCEEcCCccCCCC
Confidence 678999999999999999999999999999999999999999987 665
No 52
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []. It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.
Probab=98.40 E-value=1.3e-07 Score=85.70 Aligned_cols=48 Identities=33% Similarity=0.808 Sum_probs=37.3
Q ss_pred CCccccCCCCCcceEEEecCceeccccCCCcccccccccCCCccC-ccc
Q psy4449 1140 NGDYLPDPDDCRSFLICSHGNLLKQSCGPSLLWNAKKKLCDWSYN-VQC 1187 (2417)
Q Consensus 1140 ~g~~~p~p~dC~kYY~C~nG~~~~~~CP~Gl~Fn~~~~~Cd~~~n-v~C 1187 (2417)
..++++|+.+|++||+|.+|.++.+.||.|++||+.+++|+++.+ +.|
T Consensus 5 ~~~~~~~~~~C~~Y~~C~~g~~~~~~C~~g~~fd~~~~~C~~~~~~~~C 53 (53)
T PF01607_consen 5 GDGFYPHPDDCRKYYQCVNGQAVEQRCPEGLYFDPSSQRCVPPSNVVQC 53 (53)
T ss_dssp SSEEE--SS-SSEEEEEETTEEEEEE-TTS-EE-TTTSSEE-TTT-TT-
T ss_pred CCeeEeCCCCCCEEEEeeCCcEECCCCcCCCEECcCcCEEcCCccCCCC
Confidence 356889999999999999999999999999999999999999998 676
No 53
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=98.20 E-value=5.6e-06 Score=103.45 Aligned_cols=86 Identities=16% Similarity=0.221 Sum_probs=71.8
Q ss_pred HHHHhHhcCCEEEEEecc-CCCcCCCchhhhhcC-HHHHHHHHHHHHHHHHHcCCCccccccCCccccccccCCCCCChh
Q psy4449 1406 RVVTLKKKGVKVSLAIGG-WNDSLGGKYSRLVNS-ATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDK 1483 (2417)
Q Consensus 1406 ~v~~~k~~g~Kv~~sigg-w~~~~~~~~~~~~~~-~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~~~~~~~~~d~ 1483 (2417)
.+..+|++|+||+..|-- |.+ ..+.+..++.+ +..+.++|+.||++++.|||||+-||+|... ..++++
T Consensus 51 ~idaAHknGV~Vlgti~~e~~~-~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~--------~~~~~~ 121 (339)
T cd06547 51 WINAAHRNGVPVLGTFIFEWTG-QVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETEL--------GDAEKA 121 (339)
T ss_pred HHHHHHhcCCeEEEEEEecCCC-chHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccC--------CcHHHH
Confidence 456889999999998853 331 22567888888 9999999999999999999999999999421 147889
Q ss_pred hHHHHHHHHHHHhcCCC
Q psy4449 1484 ESFGLFVRELHQAFKPH 1500 (2417)
Q Consensus 1484 ~~~~~fv~eL~~~l~~~ 1500 (2417)
+.+.+||++|++++|+.
T Consensus 122 ~~l~~F~~~L~~~~~~~ 138 (339)
T cd06547 122 KRLIAFLRYLKAKLHEN 138 (339)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999999874
No 54
>smart00494 ChtBD2 Chitin-binding domain type 2.
Probab=98.17 E-value=1.4e-06 Score=79.61 Aligned_cols=49 Identities=33% Similarity=0.855 Sum_probs=46.3
Q ss_pred CCccccCCCCCcceEEEecCceeccccCCCcccccccccCCCccCcccC
Q psy4449 1140 NGDYLPDPDDCRSFLICSHGNLLKQSCGPSLLWNAKKKLCDWSYNVQCS 1188 (2417)
Q Consensus 1140 ~g~~~p~p~dC~kYY~C~nG~~~~~~CP~Gl~Fn~~~~~Cd~~~nv~C~ 1188 (2417)
.+++++|+.+|++||+|.+|.++.+.||.|++||...+.|+++.++.|.
T Consensus 7 ~~g~~~~~~~C~~y~~C~~~~~~~~~C~~g~~f~~~~~~C~~~~~~~C~ 55 (56)
T smart00494 7 GDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFDPATQTCDWPDNVGCG 55 (56)
T ss_pred CCccccCcccCCeeEEcCCCcEEeccCcCCCeECCCCCCcCCcccCCCC
Confidence 4779999999999999999999999999999999999999999998884
No 55
>smart00494 ChtBD2 Chitin-binding domain type 2.
Probab=98.17 E-value=1.5e-06 Score=79.46 Aligned_cols=49 Identities=37% Similarity=0.805 Sum_probs=46.4
Q ss_pred CCccccCCCCCcccceeccCceeeeccCCCcccccccccCCCCcccccc
Q psy4449 1207 EGEFAAYPSDCNKYQYCIWGSYQVASCSPGLYWNDKMKTCDWPYRTKCK 1255 (2417)
Q Consensus 1207 ~~~~~p~p~dCskYy~C~~G~~~~~~Cp~Gl~Fd~~~~~Cd~p~~~~C~ 1255 (2417)
.+++++||.+|++||.|.+|.+..+.||.|++||...++|+++..+.|.
T Consensus 7 ~~g~~~~~~~C~~y~~C~~~~~~~~~C~~g~~f~~~~~~C~~~~~~~C~ 55 (56)
T smart00494 7 GDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFDPATQTCDWPDNVGCG 55 (56)
T ss_pred CCccccCcccCCeeEEcCCCcEEeccCcCCCeECCCCCCcCCcccCCCC
Confidence 3689999999999999999999999999999999999999999998886
No 56
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=97.86 E-value=3.5e-05 Score=96.49 Aligned_cols=155 Identities=17% Similarity=0.256 Sum_probs=103.4
Q ss_pred HHHHHHhCCCEEEEEEc-CCCCCCCcchhHhhcC-HHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcchh
Q psy4449 1773 KVTALKKKGVKVTLAIG-GWNDSAGNKYSRLVNS-QQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDK 1850 (2417)
Q Consensus 1773 ~i~~lk~~glKvllsIG-Gw~~s~~~~fs~~~~~-~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~ 1850 (2417)
.+.++|++|+|||-.|- -|.. ..+.+..|+.+ +..|.++|+.|+++++.|||||+.||+|... ..+.++
T Consensus 51 ~idaAHknGV~Vlgti~~e~~~-~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~--------~~~~~~ 121 (339)
T cd06547 51 WINAAHRNGVPVLGTFIFEWTG-QVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETEL--------GDAEKA 121 (339)
T ss_pred HHHHHHhcCCeEEEEEEecCCC-chHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccC--------CcHHHH
Confidence 46689999999997663 1221 23457888888 9999999999999999999999999999542 146789
Q ss_pred hhHHHHHHHHHHhcCCCC--cEEEEE--EC-CChhhhc---ccCCccccccCcceEEEEeccCCCCCCCCCCCCCcCCCC
Q psy4449 1851 QGFADLIKELRAAFNPHD--LLLSAA--VS-PSKAVID---NAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYAL 1922 (2417)
Q Consensus 1851 ~~~~~llkeLr~~l~~~~--~~Ls~a--v~-~~~~~~~---~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~aPLy~~ 1922 (2417)
+++..||++|+++++++. ..+.-- +. .+...++ ...+.+-+ +.+|-|.+ ||. |..
T Consensus 122 ~~l~~F~~~L~~~~~~~~~~~~v~WYDs~t~~G~l~wQn~Ln~~N~~ff-~~~D~~Fl---NY~--W~~----------- 184 (339)
T cd06547 122 KRLIAFLRYLKAKLHENVPGSLVIWYDSMTEDGKLSWQNELNSKNKPFF-DVCDGIFL---NYW--WTE----------- 184 (339)
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEEecCCCCCccchhhhhhHHHHHHH-hhhcceeE---ecC--CCc-----------
Confidence 999999999999998642 222211 10 0110000 01111111 33443221 222 211
Q ss_pred CCCCCCCccHHHHHHHHHHcCCCCCcEeeeccccceee
Q psy4449 1923 PNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSF 1960 (2417)
Q Consensus 1923 ~~~~~~~~nv~~~v~~~~~~G~p~~KLvlGiP~YG~~f 1960 (2417)
...+.+++.....|..+.+|.+||=..||..
T Consensus 185 -------~~l~~s~~~a~~~g~~~~dvy~GiDv~grg~ 215 (339)
T cd06547 185 -------ESLERSVQLAEGLGRSPYDVYVGVDVWGRGT 215 (339)
T ss_pred -------chHHHHHHHHHHcCCCHhHEEEEEEEEcCCc
Confidence 1356667777888999999999999988875
No 57
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.31 E-value=0.0013 Score=82.02 Aligned_cols=170 Identities=20% Similarity=0.288 Sum_probs=105.4
Q ss_pred HHHHHHHHhHhcCCEEEEEe-ccCC-C----------------cCC--Cch------hhhh--cCHHHHHHHHHHHHHHH
Q psy4449 1402 LFYERVVTLKKKGVKVSLAI-GGWN-D----------------SLG--GKY------SRLV--NSATARQRFIEHVVKFL 1453 (2417)
Q Consensus 1402 ~~~~~v~~~k~~g~Kv~~si-ggw~-~----------------~~~--~~~------~~~~--~~~~~r~~fi~~iv~~l 1453 (2417)
-+...|.++|++|++|..-+ -+.. . ..+ ..+ ...+ ..|+.|+-.++-+.+++
T Consensus 71 pL~~~I~eaHkrGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv 150 (311)
T PF02638_consen 71 PLEFMIEEAHKRGLEVHAWFRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIV 150 (311)
T ss_pred HHHHHHHHHHHcCCEEEEEEEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHH
Confidence 45668889999999999765 1100 0 000 000 0112 36788888888888999
Q ss_pred HHcCCCccccc-cCCccc-ccccc-------------CCCCCCh-------hhHHHHHHHHHHHhcCCC--ceeEEEeec
Q psy4449 1454 LKYQFDGLDLD-WEYPTC-WQVNC-------------DAGPDSD-------KESFGLFVRELHQAFKPH--GLLLSAAVS 1509 (2417)
Q Consensus 1454 ~~ygfDGvDlD-~E~p~~-~~~~~-------------~~~~~~d-------~~~~~~fv~eL~~~l~~~--~~~ls~av~ 1509 (2417)
++|++|||.|| +-||.. ++-+. ......| +++...||++|++++++. .+.+++++.
T Consensus 151 ~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp~ 230 (311)
T PF02638_consen 151 KNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSISPF 230 (311)
T ss_pred hcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 99999999999 667541 11100 0112344 688999999999999874 466666665
Q ss_pred CCh--hhhccccchhhhc--ccCceEEeeeccc-CCCcCCCCCCCCCCCCCCCCCccccchhHHHHHHHHhCCC-CcceE
Q psy4449 1510 PSK--QVINAAYDVKALS--ESLDWISVMTYDY-HGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGAP-SRKLV 1583 (2417)
Q Consensus 1510 p~~--~~~~~~~d~~~l~--~~vD~i~vMtYD~-~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~~~~g~p-~~Kl~ 1583 (2417)
+.. .+.....|..... .++|+|..|.|-. .+. .....+..+..|.+.-.+ .-+|.
T Consensus 231 g~~~~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~~~~~-------------------~~~~~~~~~~~w~~~~~~~~v~ly 291 (311)
T PF02638_consen 231 GIWNSAYDDYYQDWRNWLKEGYIDYIVPQIYWSDFSH-------------------FTAPYEQLAKWWAKQVKPTNVHLY 291 (311)
T ss_pred cchhhhhhheeccHHHHHhcCCccEEEeeecccccch-------------------hHHHHHHHHHHHHHhhcCCCceEE
Confidence 432 1112233444333 5999999999944 211 112345566777765554 34899
Q ss_pred eecccchh
Q psy4449 1584 MGVHPLLS 1591 (2417)
Q Consensus 1584 ~G~~p~yg 1591 (2417)
+|+ .+|.
T Consensus 292 ~G~-~~y~ 298 (311)
T PF02638_consen 292 IGL-ALYK 298 (311)
T ss_pred Ecc-CcCC
Confidence 999 6663
No 58
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=97.21 E-value=0.00044 Score=85.87 Aligned_cols=84 Identities=20% Similarity=0.333 Sum_probs=60.8
Q ss_pred HHHHhHhcCCEEEEEec-cCCCcCCCchhhhhc-CHHHHHHHHHHHHHHHHHcCCCccccccCCccccccccCCCCC-Ch
Q psy4449 1406 RVVTLKKKGVKVSLAIG-GWNDSLGGKYSRLVN-SATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPD-SD 1482 (2417)
Q Consensus 1406 ~v~~~k~~g~Kv~~sig-gw~~~~~~~~~~~~~-~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~~~~~~~~-~d 1482 (2417)
.+.++|++|+|||=.|- .|.++ .+.+.+++. ++.....+|+.|+++++-|||||.-|.+|.+. .. .+
T Consensus 47 widaAHrnGV~vLGTiife~~~~-~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~---------~~~~~ 116 (311)
T PF03644_consen 47 WIDAAHRNGVKVLGTIIFEWGGG-AEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLINIETPL---------SGPED 116 (311)
T ss_dssp HHHHHHHTT--EEEEEEEEEE---HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEEEEESS---------TTGGG
T ss_pred hHHHHHhcCceEEEEEEecCCch-HHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEEecccC---------CchhH
Confidence 46788999999976443 35442 356788888 88888999999999999999999999999532 22 68
Q ss_pred hhHHHHHHHHHHHhcCC
Q psy4449 1483 KESFGLFVRELHQAFKP 1499 (2417)
Q Consensus 1483 ~~~~~~fv~eL~~~l~~ 1499 (2417)
.+.+..||++|+++++.
T Consensus 117 ~~~l~~F~~~l~~~~~~ 133 (311)
T PF03644_consen 117 AENLIDFLKYLRKEAHE 133 (311)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 89999999999999976
No 59
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.20 E-value=0.0027 Score=78.21 Aligned_cols=136 Identities=22% Similarity=0.324 Sum_probs=98.2
Q ss_pred hHHHHHHHHhHhcCCEEEE-----------------Eec---c--CCCcCCCchhhhh-cCHHHHHHHHHHHHHHHHHcC
Q psy4449 1401 ILFYERVVTLKKKGVKVSL-----------------AIG---G--WNDSLGGKYSRLV-NSATARQRFIEHVVKFLLKYQ 1457 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~g~Kv~~-----------------sig---g--w~~~~~~~~~~~~-~~~~~r~~fi~~iv~~l~~yg 1457 (2417)
.++.+.+..||++||.++. +|. | |.+..+. .-+- -+++.++ ++-.|...+-+.|
T Consensus 61 ~D~~~l~~~l~e~gIY~IARIv~FkD~~la~~~pe~av~~~~G~~w~d~~~~--~WvnP~~~evw~-Y~i~IA~Eaa~~G 137 (316)
T PF13200_consen 61 KDLKALVKKLKEHGIYPIARIVVFKDPVLAEAHPEWAVKTKDGSVWRDNEGE--AWVNPYSKEVWD-YNIDIAKEAAKLG 137 (316)
T ss_pred cCHHHHHHHHHHCCCEEEEEEEEecChHHhhhChhhEEECCCCCcccCCCCC--ccCCCCCHHHHH-HHHHHHHHHHHcC
Confidence 3456788899999988876 331 1 4433221 1111 1344444 4445888888899
Q ss_pred CCcccccc-CCcc---ccccccCCCCCC--hhhHHHHHHHHHHHhcCCCceeEEEeecCChhhh----ccccchhhhccc
Q psy4449 1458 FDGLDLDW-EYPT---CWQVNCDAGPDS--DKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVI----NAAYDVKALSES 1527 (2417)
Q Consensus 1458 fDGvDlD~-E~p~---~~~~~~~~~~~~--d~~~~~~fv~eL~~~l~~~~~~ls~av~p~~~~~----~~~~d~~~l~~~ 1527 (2417)
||.|.||+ .||. ..+..++..... -.+....||+++|++|++.|..||++|..-.... .-|.++..|+++
T Consensus 138 FdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~v~vSaDVfG~~~~~~~~~~iGQ~~~~~a~~ 217 (316)
T PF13200_consen 138 FDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPYGVPVSADVFGYVAWSPDDMGIGQDFEKIAEY 217 (316)
T ss_pred CCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHcCCCEEEEecccccccCCCCCcCCCHHHHhhh
Confidence 99999998 8998 444555544444 3478999999999999999999999997643222 358899999999
Q ss_pred CceEEeeecccC
Q psy4449 1528 LDWISVMTYDYH 1539 (2417)
Q Consensus 1528 vD~i~vMtYD~~ 1539 (2417)
||+|..|-|==|
T Consensus 218 vD~IsPMiYPSh 229 (316)
T PF13200_consen 218 VDYISPMIYPSH 229 (316)
T ss_pred CCEEEecccccc
Confidence 999999999666
No 60
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.10 E-value=0.016 Score=71.66 Aligned_cols=138 Identities=22% Similarity=0.332 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhCCCEEEEEE--------------------cC--CCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCC
Q psy4449 1769 KFYEKVTALKKKGVKVTLAI--------------------GG--WNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFD 1826 (2417)
Q Consensus 1769 ~~~~~i~~lk~~glKvllsI--------------------GG--w~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfD 1826 (2417)
++.+.++.||++|+-++.-| +| |.+..+..|-.- -+++.++-. -.|+.-+.+.|||
T Consensus 62 D~~~l~~~l~e~gIY~IARIv~FkD~~la~~~pe~av~~~~G~~w~d~~~~~WvnP-~~~evw~Y~-i~IA~Eaa~~GFd 139 (316)
T PF13200_consen 62 DLKALVKKLKEHGIYPIARIVVFKDPVLAEAHPEWAVKTKDGSVWRDNEGEAWVNP-YSKEVWDYN-IDIAKEAAKLGFD 139 (316)
T ss_pred CHHHHHHHHHHCCCEEEEEEEEecChHHhhhChhhEEECCCCCcccCCCCCccCCC-CCHHHHHHH-HHHHHHHHHcCCC
Confidence 35677889999998777333 12 333222223111 133444444 4577788889999
Q ss_pred eEEEee-cCCCC---ccCCCCCCCcc--hhhhHHHHHHHHHHhcCCCCcEEEEEECCChhhh----cccCCccccccCcc
Q psy4449 1827 GLDLDW-EYPKC---WQVDCKQGPAS--DKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVI----DNAYDIPVMSENLD 1896 (2417)
Q Consensus 1827 GiDiDw-EyP~~---~~~~~~~~~~~--d~~~~~~llkeLr~~l~~~~~~Ls~av~~~~~~~----~~~yd~~~l~~~vD 1896 (2417)
.|.||. .||.. .+......... -.+....||+..|+++++.+..||+.|....... ..|.++..|+++||
T Consensus 140 EIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~v~vSaDVfG~~~~~~~~~~iGQ~~~~~a~~vD 219 (316)
T PF13200_consen 140 EIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPYGVPVSADVFGYVAWSPDDMGIGQDFEKIAEYVD 219 (316)
T ss_pred EEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHcCCCEEEEecccccccCCCCCcCCCHHHHhhhCC
Confidence 999996 89971 11122222222 3467889999999999999999999987643332 45779999999999
Q ss_pred eEEEEeccCCCC
Q psy4449 1897 WISVMTYDYHGQ 1908 (2417)
Q Consensus 1897 ~i~vMtYD~~g~ 1908 (2417)
+|.-|-|-=|-.
T Consensus 220 ~IsPMiYPSh~~ 231 (316)
T PF13200_consen 220 YISPMIYPSHYG 231 (316)
T ss_pred EEEecccccccC
Confidence 999999976643
No 61
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=96.98 E-value=0.00077 Score=83.74 Aligned_cols=156 Identities=20% Similarity=0.250 Sum_probs=91.2
Q ss_pred HHHHHHHhCCCEEEEEEc-CCCCCCCcchhHhhc-CHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcch
Q psy4449 1772 EKVTALKKKGVKVTLAIG-GWNDSAGNKYSRLVN-SQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASD 1849 (2417)
Q Consensus 1772 ~~i~~lk~~glKvllsIG-Gw~~s~~~~fs~~~~-~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d 1849 (2417)
.-+.++|++|+|||=.|- .|..+ ...+.+|+. ++.....+|+.++++++-|||||.-|++|.+. ....+
T Consensus 46 ~widaAHrnGV~vLGTiife~~~~-~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~--------~~~~~ 116 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEWGGG-AEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLINIETPL--------SGPED 116 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEEE---HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEEEEESS--------TTGGG
T ss_pred hhHHHHHhcCceEEEEEEecCCch-HHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEEecccC--------CchhH
Confidence 347789999999983331 33332 356788888 88888999999999999999999999999654 11268
Q ss_pred hhhHHHHHHHHHHhcCC-CCcEEEEE--ECCC-hhhhcccCCc--cccccCcceEEEEeccCCCCCCCCCCCCCcCCCCC
Q psy4449 1850 KQGFADLIKELRAAFNP-HDLLLSAA--VSPS-KAVIDNAYDI--PVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALP 1923 (2417)
Q Consensus 1850 ~~~~~~llkeLr~~l~~-~~~~Ls~a--v~~~-~~~~~~~yd~--~~l~~~vD~i~vMtYD~~g~w~~~tg~~aPLy~~~ 1923 (2417)
..++..||++|++++++ .+..|.-- +... ...+....+- ....+.+|-|.+ ||.. .
T Consensus 117 ~~~l~~F~~~l~~~~~~~~~~~v~WYDs~t~~G~l~~qn~Ln~~N~~f~~~~d~iFl---NY~W--~------------- 178 (311)
T PF03644_consen 117 AENLIDFLKYLRKEAHENPGSEVIWYDSVTNSGRLSWQNELNDKNKPFFDVCDGIFL---NYNW--N------------- 178 (311)
T ss_dssp HHHHHHHHHHHHHHHHHT-T-EEEEES-B-SSSSB---SSS-TTTGGGBES-SEEEE----S----S-------------
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEeecCCcCCccchHHHHHhhCcchhhhcceeeE---ecCC--C-------------
Confidence 89999999999999875 12222221 1110 0000000000 001223333322 2221 1
Q ss_pred CCCCCCccHHHHHHHHHHcCCCCCcEeeecccccee
Q psy4449 1924 NDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQS 1959 (2417)
Q Consensus 1924 ~~~~~~~nv~~~v~~~~~~G~p~~KLvlGiP~YG~~ 1959 (2417)
..+++.+++...+.|.++.+|.+||=..||.
T Consensus 179 -----~~~l~~s~~~A~~~~~~~~~vy~GiDv~grg 209 (311)
T PF03644_consen 179 -----PDSLESSVANAKSRGRDPYDVYAGIDVFGRG 209 (311)
T ss_dssp -----HHHHHHHHHHHHHHTS-GGGEEEEEEHHHHT
T ss_pred -----cccHHHHHHHHHHcCCCHHHEEEEEEEEcCC
Confidence 1247788899999999999999999999886
No 62
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=96.53 E-value=0.0086 Score=74.93 Aligned_cols=135 Identities=17% Similarity=0.238 Sum_probs=88.7
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCCeEEEe-ecCCC-CccCCC-------------CCCCcch-------hhhHHHHHHHHH
Q psy4449 1804 NSQQARSKFIAHVVNFILEHNFDGLDLD-WEYPK-CWQVDC-------------KQGPASD-------KQGFADLIKELR 1861 (2417)
Q Consensus 1804 ~~~~~R~~Fi~siv~~l~~ygfDGiDiD-wEyP~-~~~~~~-------------~~~~~~d-------~~~~~~llkeLr 1861 (2417)
..++.|+-.++-+.+++++|.+|||.|| .-||. .++.+. ......| +++...||++|+
T Consensus 134 ~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~ 213 (311)
T PF02638_consen 134 GHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIY 213 (311)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999 56753 222110 0112344 788999999999
Q ss_pred HhcCCC--CcEEEEEECCChh--hhcccCCcccc--ccCcceEEEEeccC-CCCCCCCCCCCCcCCCCCCCCCCCccHHH
Q psy4449 1862 AAFNPH--DLLLSAAVSPSKA--VIDNAYDIPVM--SENLDWISVMTYDY-HGQWDKKTGHVAPMYALPNDTTPTFNANY 1934 (2417)
Q Consensus 1862 ~~l~~~--~~~Ls~av~~~~~--~~~~~yd~~~l--~~~vD~i~vMtYD~-~g~w~~~tg~~aPLy~~~~~~~~~~nv~~ 1934 (2417)
+++++. .+.+++++.+... ......|...- ..++|+|..|.|-. .+. .....+.
T Consensus 214 ~~ik~~kP~v~~sisp~g~~~~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~~~~~-------------------~~~~~~~ 274 (311)
T PF02638_consen 214 DAIKAIKPWVKFSISPFGIWNSAYDDYYQDWRNWLKEGYIDYIVPQIYWSDFSH-------------------FTAPYEQ 274 (311)
T ss_pred HHHHHhCCCCeEEEEeecchhhhhhheeccHHHHHhcCCccEEEeeecccccch-------------------hHHHHHH
Confidence 999864 4666666543321 11111233322 25899999999964 211 1124667
Q ss_pred HHHHHHHcCCC-CCcEeeeccccc
Q psy4449 1935 SLHYWVSHGAD-RKKVIFGMPMYG 1957 (2417)
Q Consensus 1935 ~v~~~~~~G~p-~~KLvlGiP~YG 1957 (2417)
.+..|.+.-.+ .-+|.+|+.+|-
T Consensus 275 ~~~~w~~~~~~~~v~ly~G~~~y~ 298 (311)
T PF02638_consen 275 LAKWWAKQVKPTNVHLYIGLALYK 298 (311)
T ss_pred HHHHHHHhhcCCCceEEEccCcCC
Confidence 77888776444 349999999884
No 63
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=96.47 E-value=0.017 Score=64.76 Aligned_cols=65 Identities=22% Similarity=0.379 Sum_probs=53.6
Q ss_pred CCCccccccCCccccccccCCCCCChhhHHHHHHHHHHHhcCCCceeEEEeecCChhhhcccc-chhhhcccCceEEeee
Q psy4449 1457 QFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAY-DVKALSESLDWISVMT 1535 (2417)
Q Consensus 1457 gfDGvDlD~E~p~~~~~~~~~~~~~d~~~~~~fv~eL~~~l~~~~~~ls~av~p~~~~~~~~~-d~~~l~~~vD~i~vMt 1535 (2417)
...||.||+..+ .+..+.|..||++||++| +.++.|||..-+. |-..- .+..|...||.+++|+
T Consensus 42 ~v~giQIDfDa~-----------t~~L~~Y~~fL~~LR~~L-P~~~~LSIT~L~d---W~~~~~~L~~L~~~VDE~VlQ~ 106 (181)
T PF11340_consen 42 NVAGIQIDFDAA-----------TSRLPAYAQFLQQLRQRL-PPDYRLSITALPD---WLSSPDWLNALPGVVDELVLQV 106 (181)
T ss_pred CceEEEEecCcc-----------ccchHHHHHHHHHHHHhC-CCCceEeeEEehh---hhcCchhhhhHhhcCCeeEEEe
Confidence 478999999943 477889999999999999 6688888888764 22233 4889999999999999
Q ss_pred c
Q psy4449 1536 Y 1536 (2417)
Q Consensus 1536 Y 1536 (2417)
|
T Consensus 107 y 107 (181)
T PF11340_consen 107 Y 107 (181)
T ss_pred e
Confidence 9
No 64
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=95.86 E-value=0.076 Score=59.77 Aligned_cols=84 Identities=18% Similarity=0.340 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHHHHHc-CCCeEEEeecCCCCccCCCCCCCcchhhhHHHHHHHHHHhcCCCCcEEEEEECCChhhhc
Q psy4449 1805 SQQARSKFIAHVVNFILEH-NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1883 (2417)
Q Consensus 1805 ~~~~R~~Fi~siv~~l~~y-gfDGiDiDwEyP~~~~~~~~~~~~~d~~~~~~llkeLr~~l~~~~~~Ls~av~~~~~~~~ 1883 (2417)
+++..++..+-+.++-..- ..-||.||+..+. .....|..||++||++|.+ ++-||++.-+.-.
T Consensus 22 ~~~~~~~i~~~l~~W~~~G~~v~giQIDfDa~t-----------~~L~~Y~~fL~~LR~~LP~-~~~LSIT~L~dW~--- 86 (181)
T PF11340_consen 22 PEQVLARILQLLQRWQAAGNNVAGIQIDFDAAT-----------SRLPAYAQFLQQLRQRLPP-DYRLSITALPDWL--- 86 (181)
T ss_pred CHHHHHHHHHHHHHHHHcCCCceEEEEecCccc-----------cchHHHHHHHHHHHHhCCC-CceEeeEEehhhh---
Confidence 4455555555555555433 5799999999553 5678999999999999965 7888887654322
Q ss_pred ccC-CccccccCcceEEEEec
Q psy4449 1884 NAY-DIPVMSENLDWISVMTY 1903 (2417)
Q Consensus 1884 ~~y-d~~~l~~~vD~i~vMtY 1903 (2417)
..- -++.|...+|-+.+|+|
T Consensus 87 ~~~~~L~~L~~~VDE~VlQ~y 107 (181)
T PF11340_consen 87 SSPDWLNALPGVVDELVLQVY 107 (181)
T ss_pred cCchhhhhHhhcCCeeEEEee
Confidence 222 37888889999999999
No 65
>KOG2331|consensus
Probab=93.31 E-value=0.51 Score=58.52 Aligned_cols=83 Identities=14% Similarity=0.306 Sum_probs=69.3
Q ss_pred HHHHHhCCCEEE-EEEcCCCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcchhhh
Q psy4449 1774 VTALKKKGVKVT-LAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQG 1852 (2417)
Q Consensus 1774 i~~lk~~glKvl-lsIGGw~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~~ 1852 (2417)
.+.+|++|+||| -=|--|+.+ ...-..++++.++.+..++.++++.+-.||||--|+.| +..+.....+
T Consensus 117 tn~AHrHGV~vlGTFItEw~eg-~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNiE---------n~i~~~~i~~ 186 (526)
T KOG2331|consen 117 TNTAHRHGVKVLGTFITEWDEG-KATCKEFLATEESVEMTVERLVELARFFGFDGWLINIE---------NKIDLAKIPN 186 (526)
T ss_pred cchhhhcCceeeeeEEEEeccc-hhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEee---------eccChhhCcc
Confidence 345799999998 335568765 46788899999999999999999999999999999999 3445556678
Q ss_pred HHHHHHHHHHhcCC
Q psy4449 1853 FADLIKELRAAFNP 1866 (2417)
Q Consensus 1853 ~~~llkeLr~~l~~ 1866 (2417)
+..|++.|.++++.
T Consensus 187 l~~F~~~Lt~~~~~ 200 (526)
T KOG2331|consen 187 LIQFVSHLTKVLHS 200 (526)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999975
No 66
>PF03427 CBM_19: Carbohydrate binding domain (family 19); InterPro: IPR005089 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM19 from CAZY which consists of 60-70 residues with chitin-binding function.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process
Probab=91.42 E-value=0.38 Score=44.26 Aligned_cols=37 Identities=30% Similarity=0.482 Sum_probs=29.2
Q ss_pred CCCCCCCCceecCCCCCCceEEeeCCeEEEEecCCCcee
Q psy4449 979 DSDSCTSGEYYPVDGECGSYYRCILGTLKKESCAPGLHW 1017 (2417)
Q Consensus 979 ~~~~c~~~~~~~~p~dC~~yy~C~~g~~~~~~Cp~G~~F 1017 (2417)
+...|.+|++....+ .+|-+|.+|.|+...||.|+.-
T Consensus 20 g~sc~t~G~~aCt~~--G~faiC~~G~Wv~~~C~~Gt~C 56 (61)
T PF03427_consen 20 GQSCSTDGEYACTSD--GSFAICDHGTWVITPCPAGTTC 56 (61)
T ss_pred CCccCCCCceeEcCC--CCEEEcCCCcEEEeeCCCCCEE
Confidence 344455666776665 7899999999999999999874
No 67
>KOG2331|consensus
Probab=90.23 E-value=0.52 Score=58.42 Aligned_cols=88 Identities=20% Similarity=0.323 Sum_probs=73.4
Q ss_pred HhHhcCCEEEE-EeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccCCccccccccCCCCCChhhHHH
Q psy4449 1409 TLKKKGVKVSL-AIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFG 1487 (2417)
Q Consensus 1409 ~~k~~g~Kv~~-siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~~~~~~~~~d~~~~~ 1487 (2417)
.++++|+||+= -|--|+.+ ...-.++++++++.+..++-++++.+-.||||-=|..| |........++.
T Consensus 119 ~AHrHGV~vlGTFItEw~eg-~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNiE---------n~i~~~~i~~l~ 188 (526)
T KOG2331|consen 119 TAHRHGVKVLGTFITEWDEG-KATCKEFLATEESVEMTVERLVELARFFGFDGWLINIE---------NKIDLAKIPNLI 188 (526)
T ss_pred hhhhcCceeeeeEEEEeccc-hhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEee---------eccChhhCccHH
Confidence 56889999986 56678765 35678899999999999999999999999999999999 356667778999
Q ss_pred HHHHHHHHhcCC---CceeEEE
Q psy4449 1488 LFVRELHQAFKP---HGLLLSA 1506 (2417)
Q Consensus 1488 ~fv~eL~~~l~~---~~~~ls~ 1506 (2417)
.||+.|.+++|. .|+.|--
T Consensus 189 ~F~~~Lt~~~~~~~p~~~ViWY 210 (526)
T KOG2331|consen 189 QFVSHLTKVLHSSVPGGLVIWY 210 (526)
T ss_pred HHHHHHHHHHhhcCCCceEEEE
Confidence 999999999974 4555543
No 68
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=89.63 E-value=1.4 Score=54.98 Aligned_cols=124 Identities=13% Similarity=0.180 Sum_probs=69.6
Q ss_pred HHHHHHHhCCCEEE--EEEcCCCCCCCcchhH-----------------------hhcCHHHHHHHHHHHHHHHHHcCCC
Q psy4449 1772 EKVTALKKKGVKVT--LAIGGWNDSAGNKYSR-----------------------LVNSQQARSKFIAHVVNFILEHNFD 1826 (2417)
Q Consensus 1772 ~~i~~lk~~glKvl--lsIGGw~~s~~~~fs~-----------------------~~~~~~~R~~Fi~siv~~l~~ygfD 1826 (2417)
+.|..||++|.||+ ||||-+.... ..|.+ -+.+++-|+-+++. ++.+.+.|||
T Consensus 85 ~~i~~Lk~~g~~viaYlSvGe~E~~R-~y~~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~r-l~~l~~kGfD 162 (315)
T TIGR01370 85 EEIVRAAAAGRWPIAYLSIGAAEDYR-FYWQKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSY-LDRVIAQGFD 162 (315)
T ss_pred HHHHHHHhCCcEEEEEEEchhccccc-hhhhhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHH-HHHHHHcCCC
Confidence 56888999999998 8999754421 11111 12356677766665 6777888999
Q ss_pred eEEEeec--CCCCccCCCCCCCcchhhhHHHHHHHHHHhcCCCCcEEEEEECCChhhhcccCCccccccCcceEEEE
Q psy4449 1827 GLDLDWE--YPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVM 1901 (2417)
Q Consensus 1827 GiDiDwE--yP~~~~~~~~~~~~~d~~~~~~llkeLr~~l~~~~~~Ls~av~~~~~~~~~~yd~~~l~~~vD~i~vM 1901 (2417)
||.||.- |-. +. ....+.+...+.++.|+++|.+..+++..-+.+.+.-+...+. ++-..+...+|.|+.-
T Consensus 163 GvfLD~lDsy~~-~~-~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG~eil~--~~~g~~~~~idgV~~E 235 (315)
T TIGR01370 163 GVYLDLIDAFEY-WA-ENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNGEELLR--DDHGGLAATVSGWAVE 235 (315)
T ss_pred eEeeccchhhhh-hc-ccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCchhhhh--ccccchhhhceEEEec
Confidence 9999952 110 00 0011124455778889999865555443333333222222221 1112345567777654
No 69
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=88.32 E-value=6.1 Score=49.52 Aligned_cols=126 Identities=17% Similarity=0.180 Sum_probs=69.9
Q ss_pred HHHHHhHhcCCEEEE--EeccCCCcCC----------------------CchhhhhcCHHHHHHHHHHHHHHHHHcCCCc
Q psy4449 1405 ERVVTLKKKGVKVSL--AIGGWNDSLG----------------------GKYSRLVNSATARQRFIEHVVKFLLKYQFDG 1460 (2417)
Q Consensus 1405 ~~v~~~k~~g~Kv~~--siggw~~~~~----------------------~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDG 1460 (2417)
+.|..+|++|.||+- +||-+.+.-. +.+--=+.+++.|+-+++. ++.+.+.||||
T Consensus 85 ~~i~~Lk~~g~~viaYlSvGe~E~~R~y~~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~r-l~~l~~kGfDG 163 (315)
T TIGR01370 85 EEIVRAAAAGRWPIAYLSIGAAEDYRFYWQKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSY-LDRVIAQGFDG 163 (315)
T ss_pred HHHHHHHhCCcEEEEEEEchhccccchhhhhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHH-HHHHHHcCCCe
Confidence 567888999998875 8887433200 1111112366777766665 67778889999
Q ss_pred cccccC--CccccccccCCCCCChhhHHHHHHHHHHHhcCCCceeEEEeecCChhhhccccchhhhcccCceEEeee
Q psy4449 1461 LDLDWE--YPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVKALSESLDWISVMT 1535 (2417)
Q Consensus 1461 vDlD~E--~p~~~~~~~~~~~~~d~~~~~~fv~eL~~~l~~~~~~ls~av~p~~~~~~~~~d~~~l~~~vD~i~vMt 1535 (2417)
|.||.= |- .+..+ ....+...+..++||++|.+.+|++.--+.+.+--+..... ++-..+...+|.|+.-+
T Consensus 164 vfLD~lDsy~-~~~~~-~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG~eil~--~~~g~~~~~idgV~~Es 236 (315)
T TIGR01370 164 VYLDLIDAFE-YWAEN-GDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNGEELLR--DDHGGLAATVSGWAVEE 236 (315)
T ss_pred Eeeccchhhh-hhccc-CCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCchhhhh--ccccchhhhceEEEecc
Confidence 999952 10 00000 01124555778899999976666544333232221111111 00123566788887744
No 70
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.60 E-value=1.6 Score=56.10 Aligned_cols=135 Identities=18% Similarity=0.262 Sum_probs=78.6
Q ss_pred HHHHHHHHhHhcCCEEEEEec----------------cCCCc--------CCCch-hhhhc---CHHHHHHHHHHHHHHH
Q psy4449 1402 LFYERVVTLKKKGVKVSLAIG----------------GWNDS--------LGGKY-SRLVN---SATARQRFIEHVVKFL 1453 (2417)
Q Consensus 1402 ~~~~~v~~~k~~g~Kv~~sig----------------gw~~~--------~~~~~-~~~~~---~~~~r~~fi~~iv~~l 1453 (2417)
.+...|.++|++|++|+.-+- .|... .++.. .++.. .++.|+-..+-+++.+
T Consensus 116 pLa~~I~~AHkr~l~v~aWf~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV 195 (418)
T COG1649 116 PLAFVIAEAHKRGLEVHAWFNPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVV 195 (418)
T ss_pred hHHHHHHHHHhcCCeeeechhhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHH
Confidence 456788999999999998221 01100 00000 23333 3567777777788899
Q ss_pred HHcCCCcccccc--CCcccccccc----------CCCCCCh--------hhHHHHHHHHHHHhcCCCc--eeEEEee-cC
Q psy4449 1454 LKYQFDGLDLDW--EYPTCWQVNC----------DAGPDSD--------KESFGLFVRELHQAFKPHG--LLLSAAV-SP 1510 (2417)
Q Consensus 1454 ~~ygfDGvDlD~--E~p~~~~~~~----------~~~~~~d--------~~~~~~fv~eL~~~l~~~~--~~ls~av-~p 1510 (2417)
++|..|||-||- =||..++-+- .++++.+ +++..+||++|...+++.+ ..++++. .+
T Consensus 196 ~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~svsp~n~ 275 (418)
T COG1649 196 RNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKPNVKFSVSPFNP 275 (418)
T ss_pred hCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEEEEccCCC
Confidence 999999999993 2343222211 1122333 3578999999999998754 5555555 21
Q ss_pred Chh----hhccccchhhh--cccCceEEeeec
Q psy4449 1511 SKQ----VINAAYDVKAL--SESLDWISVMTY 1536 (2417)
Q Consensus 1511 ~~~----~~~~~~d~~~l--~~~vD~i~vMtY 1536 (2417)
... +..-.-|.... ..++|++++|.|
T Consensus 276 ~~~~~f~y~~~~qDw~~Wv~~G~iD~l~pqvY 307 (418)
T COG1649 276 LGSATFAYDYFLQDWRRWVRQGLIDELAPQVY 307 (418)
T ss_pred CCccceehhhhhhhHHHHHHcccHhhhhhhhh
Confidence 111 11111122211 348999999999
No 71
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=84.64 E-value=7.6 Score=47.29 Aligned_cols=196 Identities=19% Similarity=0.261 Sum_probs=114.3
Q ss_pred CccEEEE-EeEEecCCCcE---EccCCCcchhhHHHHHHHH-HHHhC-CCEEEEE--EcCCCCCC-------------Cc
Q psy4449 1739 LCTHVIY-GFAVLDTDQLV---IKPHDTWADLDNKFYEKVT-ALKKK-GVKVTLA--IGGWNDSA-------------GN 1797 (2417)
Q Consensus 1739 ~cTHIiy-aFa~i~~~~~~---~~~~d~~~d~~~~~~~~i~-~lk~~-glKvlls--IGGw~~s~-------------~~ 1797 (2417)
..++|.+ +|+..+.+|.. .++. .+..+..+++.++. .|+.+ |+||..= +=+|.... ..
T Consensus 30 ~~~tV~Lqaf~d~~gdg~~~~~YFpn-r~lpvraDlf~rvawql~tr~~v~VyAWMPvlaf~lp~~~~~~~~~~~~~~~~ 108 (294)
T PF14883_consen 30 GINTVYLQAFADPDGDGNADAVYFPN-RHLPVRADLFNRVAWQLRTRAGVKVYAWMPVLAFDLPKVKRADEVRTDRPDPD 108 (294)
T ss_pred CCCEEEEEeeeCCCCCCceeeEEcCC-CCCchHHHHHHHHHHHHhhhhCCEEEEeeehhhccCCCcchhhhccccCCCCC
Confidence 3555555 78877777643 3443 35667778888877 77744 8998732 22222110 01
Q ss_pred chhHhhcCHHHHHHHHHHHHHHHHHc-CCCeEEE-------eecCCCCccCCCCCCCcchhhhHHHHHHHHHHhcCCC--
Q psy4449 1798 KYSRLVNSQQARSKFIAHVVNFILEH-NFDGLDL-------DWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPH-- 1867 (2417)
Q Consensus 1798 ~fs~~~~~~~~R~~Fi~siv~~l~~y-gfDGiDi-------DwEyP~~~~~~~~~~~~~d~~~~~~llkeLr~~l~~~-- 1867 (2417)
.+.++---....++.|++|-+=|-.| .||||-| |+|.|...+. .....-...++.|..||++..+..
T Consensus 109 ~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~---~~~~~Kt~~Li~ft~eL~~~v~~~rp 185 (294)
T PF14883_consen 109 GYRRLSPFDPEARQIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQN---PADRQKTRALIDFTMELAAAVRRYRP 185 (294)
T ss_pred CceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccC---hhhHHHHHHHHHHHHHHHHHHHHhCc
Confidence 12222221233456788899888888 8999988 4564431100 001122356788889998887642
Q ss_pred ------CcEEEEEECCChhhhcccCCccccccCcceEEEEeccCCCCCCCCCCCCCcCCCCCCCCCCCccHHHHHHHHHH
Q psy4449 1868 ------DLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVS 1941 (2417)
Q Consensus 1868 ------~~~Ls~av~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~tg~~aPLy~~~~~~~~~~nv~~~v~~~~~ 1941 (2417)
++.-...+.|....+ -+.++..+.+..||..||++=|+.+ ++ .+.-.+...++.+..
T Consensus 186 ~lkTARNiya~pvl~P~se~W-fAQnl~~fl~~YD~taimAMPymE~--------~~--------~~~~WL~~Lv~~v~~ 248 (294)
T PF14883_consen 186 DLKTARNIYAEPVLNPESEAW-FAQNLDDFLKAYDYTAIMAMPYMEQ--------AE--------DPEQWLAQLVDAVAA 248 (294)
T ss_pred cchhhhcccccccCCcchhhH-HHHhHHHHHHhCCeeheeccchhcc--------cc--------CHHHHHHHHHHHHHh
Confidence 222222233322222 2346778888899999999877643 00 112245666777777
Q ss_pred cCCCCCcEeeeccc
Q psy4449 1942 HGADRKKVIFGMPM 1955 (2417)
Q Consensus 1942 ~G~p~~KLvlGiP~ 1955 (2417)
...+.+|+|+=+-.
T Consensus 249 ~p~~l~KtvFELQa 262 (294)
T PF14883_consen 249 RPGGLDKTVFELQA 262 (294)
T ss_pred cCCcccceEEEEec
Confidence 77778999987764
No 72
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=84.37 E-value=2.7 Score=56.99 Aligned_cols=87 Identities=21% Similarity=0.246 Sum_probs=57.1
Q ss_pred hHHHHHHHHhHhcCCEEEEE-eccCCC-------cCCCchhh--------h--hcCH---HHHHHHHHHHHHHHHHcCCC
Q psy4449 1401 ILFYERVVTLKKKGVKVSLA-IGGWND-------SLGGKYSR--------L--VNSA---TARQRFIEHVVKFLLKYQFD 1459 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~g~Kv~~s-iggw~~-------~~~~~~~~--------~--~~~~---~~r~~fi~~iv~~l~~ygfD 1459 (2417)
++|.+.|.++|++||+|++= |-+-.. .....|.. . ..++ ..|+-+++++.-.|++||+|
T Consensus 160 ~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iD 239 (542)
T TIGR02402 160 DDLKALVDAAHGLGLGVILDVVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHFD 239 (542)
T ss_pred HHHHHHHHHHHHCCCEEEEEEccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCc
Confidence 67899999999999999993 222100 00001110 1 1244 88999999999999999999
Q ss_pred ccccccCCccccccccCCCCCChhhHHHHHHHHHHHhcCC
Q psy4449 1460 GLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKP 1499 (2417)
Q Consensus 1460 GvDlD~E~p~~~~~~~~~~~~~d~~~~~~fv~eL~~~l~~ 1499 (2417)
|+-||-=. ..... .-..|+++|+++++.
T Consensus 240 GfR~D~~~---------~~~~~---~~~~~l~~~~~~~~~ 267 (542)
T TIGR02402 240 GLRLDAVH---------AIADT---SAKHILEELAREVHE 267 (542)
T ss_pred EEEEeCHH---------Hhccc---cHHHHHHHHHHHHHH
Confidence 99999531 01111 125788888887754
No 73
>PRK12568 glycogen branching enzyme; Provisional
Probab=80.98 E-value=5.6 Score=55.03 Aligned_cols=97 Identities=19% Similarity=0.369 Sum_probs=62.4
Q ss_pred hhHHHHHHHHhHhcCCEEEEEe-cc-----------CCCcC---------C--Cchhh---hhcCHHHHHHHHHHHHHHH
Q psy4449 1400 HILFYERVVTLKKKGVKVSLAI-GG-----------WNDSL---------G--GKYSR---LVNSATARQRFIEHVVKFL 1453 (2417)
Q Consensus 1400 ~~~~~~~v~~~k~~g~Kv~~si-gg-----------w~~~~---------~--~~~~~---~~~~~~~r~~fi~~iv~~l 1453 (2417)
.++|.+.|.++|++||+|++=+ -+ +.+.. + ..+.. -..+++.|+-+++++.-.|
T Consensus 318 ~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl 397 (730)
T PRK12568 318 PDGFAQFVDACHRAGIGVILDWVSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWI 397 (730)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHH
Confidence 3678999999999999999932 11 11100 0 00111 2357889999999999999
Q ss_pred HHcCCCcccccc-------CC---ccccccccCCCCCChhhH--HHHHHHHHHHhcCCC
Q psy4449 1454 LKYQFDGLDLDW-------EY---PTCWQVNCDAGPDSDKES--FGLFVRELHQAFKPH 1500 (2417)
Q Consensus 1454 ~~ygfDGvDlD~-------E~---p~~~~~~~~~~~~~d~~~--~~~fv~eL~~~l~~~ 1500 (2417)
++|++||+-||= .| ++.|..+..+ ..++ =..|||+|++.++..
T Consensus 398 ~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~g----g~en~ea~~Fl~~ln~~v~~~ 452 (730)
T PRK12568 398 EHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHG----GRENLEAVAFLRQLNREIASQ 452 (730)
T ss_pred HHhCceEEEEcCHhHhhhhccccccccccccccC----CccChHHHHHHHHHHHHHHHH
Confidence 999999999992 11 1112111111 1223 368999999998654
No 74
>PRK05402 glycogen branching enzyme; Provisional
Probab=77.98 E-value=8.2 Score=54.47 Aligned_cols=99 Identities=19% Similarity=0.234 Sum_probs=62.1
Q ss_pred hhHHHHHHHHhHhcCCEEEEE-eccCC-----------Cc------C---C--Cchhh---hhcCHHHHHHHHHHHHHHH
Q psy4449 1400 HILFYERVVTLKKKGVKVSLA-IGGWN-----------DS------L---G--GKYSR---LVNSATARQRFIEHVVKFL 1453 (2417)
Q Consensus 1400 ~~~~~~~v~~~k~~g~Kv~~s-iggw~-----------~~------~---~--~~~~~---~~~~~~~r~~fi~~iv~~l 1453 (2417)
.++|.+.|.++|++||+|||= |-+-. +. . + ..+.. -..++..|+-+++.+.-.|
T Consensus 314 ~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~ 393 (726)
T PRK05402 314 PDDFRYFVDACHQAGIGVILDWVPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWL 393 (726)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHH
Confidence 367899999999999999993 22210 00 0 0 00000 2347889999999999999
Q ss_pred HHcCCCcccccc-CC---------ccccccccCCCCCChhhHHHHHHHHHHHhcCCC
Q psy4449 1454 LKYQFDGLDLDW-EY---------PTCWQVNCDAGPDSDKESFGLFVRELHQAFKPH 1500 (2417)
Q Consensus 1454 ~~ygfDGvDlD~-E~---------p~~~~~~~~~~~~~d~~~~~~fv~eL~~~l~~~ 1500 (2417)
++||+||+-||- .. ++.|..+..++ ..+ ..-..|+++|++.++..
T Consensus 394 ~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~-~~~-~~~~~fl~~~~~~~~~~ 448 (726)
T PRK05402 394 EEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGG-REN-LEAIDFLRELNAVVHEE 448 (726)
T ss_pred HHhCCcEEEECCHHHhhhccccccccccccccccC-cCC-HHHHHHHHHHHHHHHHH
Confidence 999999999993 11 01111111111 122 24578999999988653
No 75
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=76.37 E-value=14 Score=46.17 Aligned_cols=111 Identities=15% Similarity=0.299 Sum_probs=66.7
Q ss_pred hHHHHHHHHhHhc--CCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccCCccccccccCCC
Q psy4449 1401 ILFYERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAG 1478 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~--g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~~~~~~ 1478 (2417)
+.+.+++..+++. +..++++|+|.+ .+.++ .+++.+.++|+|+|+|++-.|.... ...
T Consensus 83 ~~~~~~i~~~~~~~~~~pvi~si~g~~----------------~~~~~-~~a~~~~~~G~d~ielN~~cP~~~~---~~~ 142 (289)
T cd02810 83 DVWLQDIAKAKKEFPGQPLIASVGGSS----------------KEDYV-ELARKIERAGAKALELNLSCPNVGG---GRQ 142 (289)
T ss_pred HHHHHHHHHHHhccCCCeEEEEeccCC----------------HHHHH-HHHHHHHHhCCCEEEEEcCCCCCCC---Ccc
Confidence 4566677766664 789999999842 12233 3456667789999999998664211 111
Q ss_pred CCChhhHHHHHHHHHHHhcCCCceeEEEeecCChhhhccccch-hhhcc-cCceEEeee
Q psy4449 1479 PDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDV-KALSE-SLDWISVMT 1535 (2417)
Q Consensus 1479 ~~~d~~~~~~fv~eL~~~l~~~~~~ls~av~p~~~~~~~~~d~-~~l~~-~vD~i~vMt 1535 (2417)
...+.+...++|+++|+++ ++.|++-+.+.... ....++ +.+.+ -+|+|.+-.
T Consensus 143 ~~~~~~~~~eiv~~vr~~~---~~pv~vKl~~~~~~-~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 143 LGQDPEAVANLLKAVKAAV---DIPLLVKLSPYFDL-EDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred cccCHHHHHHHHHHHHHcc---CCCEEEEeCCCCCH-HHHHHHHHHHHHcCCCEEEEEc
Confidence 2345677788899999887 45566666553210 011111 22222 489998753
No 76
>KOG0260|consensus
Probab=75.26 E-value=10 Score=52.90 Aligned_cols=18 Identities=6% Similarity=0.207 Sum_probs=13.4
Q ss_pred eEEEccCchhHHHHHHHH
Q psy4449 323 EWITYENNDSIRRKMNYI 340 (2417)
Q Consensus 323 ~wV~Yed~~Sv~~K~~y~ 340 (2417)
.||-|.+-++++...+.+
T Consensus 874 ~~vE~q~~~~l~~~~a~f 891 (1605)
T KOG0260|consen 874 HPVEFQNGETLGSLNACF 891 (1605)
T ss_pred ceeeccccccccchHHHH
Confidence 488888888887665554
No 77
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=73.52 E-value=6 Score=43.35 Aligned_cols=66 Identities=21% Similarity=0.389 Sum_probs=47.8
Q ss_pred hhHHHHHHHHhHhcCCEEEEEecc-CCCc-------------CC----------CchhhhhcCHHHHHHHHHHHHHHHHH
Q psy4449 1400 HILFYERVVTLKKKGVKVSLAIGG-WNDS-------------LG----------GKYSRLVNSATARQRFIEHVVKFLLK 1455 (2417)
Q Consensus 1400 ~~~~~~~v~~~k~~g~Kv~~sigg-w~~~-------------~~----------~~~~~~~~~~~~r~~fi~~iv~~l~~ 1455 (2417)
.+-+-+.|.++|++||||++-+.- |++. .| ..+..+..|..-|+.++.+|-++|++
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~ 122 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDR 122 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHc
Confidence 356778999999999999984331 3220 01 12445666667778888888888899
Q ss_pred cCCCcccccc
Q psy4449 1456 YQFDGLDLDW 1465 (2417)
Q Consensus 1456 ygfDGvDlD~ 1465 (2417)
|++|||=|||
T Consensus 123 y~~DGiF~D~ 132 (132)
T PF14871_consen 123 YDVDGIFFDI 132 (132)
T ss_pred CCCCEEEecC
Confidence 9999999886
No 78
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=73.23 E-value=42 Score=41.20 Aligned_cols=179 Identities=15% Similarity=0.165 Sum_probs=105.6
Q ss_pred cCCCccccc----cCccchhhhchhhhhh-hccccCCCceEEEEec-------c---------------ccccc-ccChH
Q psy4449 53 DPVSRALIP----EDLEYDVIKGGYKSFL-GLKEANPELKVYLAVK-------S---------------NFVSI-TSDRE 104 (2417)
Q Consensus 53 d~~~~~~~~----~~~~~D~~~~~y~~~~-~LK~~~P~lkvlLsVG-------g---------------~f~~~-~~~~~ 104 (2417)
|++++.... .+..+-+....+.|+. +|+.|. ++||+.=+. + .|.++ ..+++
T Consensus 41 d~~gdg~~~~~YFpnr~lpvraDlf~rvawql~tr~-~v~VyAWMPvlaf~lp~~~~~~~~~~~~~~~~~y~RLSPf~p~ 119 (294)
T PF14883_consen 41 DPDGDGNADAVYFPNRHLPVRADLFNRVAWQLRTRA-GVKVYAWMPVLAFDLPKVKRADEVRTDRPDPDGYRRLSPFDPE 119 (294)
T ss_pred CCCCCCceeeEEcCCCCCchHHHHHHHHHHHHhhhh-CCEEEEeeehhhccCCCcchhhhccccCCCCCCceecCCCCHH
Confidence 555554332 2445666667788988 788665 688765431 1 22222 22444
Q ss_pred HHHHHHHHHHHHHHhc-CCCceEE-------EecCCCCCCCCCchhhhhhhhHHHHHHHHHHHHHHhhcCCcEE------
Q psy4449 105 SRLNFISSVLEMFDMY-KFDGLDL-------NVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRRNNYQL------ 170 (2417)
Q Consensus 105 ~R~~fi~siv~~l~~~-~fDGidl-------~W~~p~~~~~~~~~~~~~~~~r~~f~~ll~eL~~~l~~~~~~L------ 170 (2417)
.| +.|..|.+=|-.| .||||-+ |+|.|..... .....--..+..|..||+.+.++....|
T Consensus 120 ~r-~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~-----~~~~~Kt~~Li~ft~eL~~~v~~~rp~lkTARNi 193 (294)
T PF14883_consen 120 AR-QIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQN-----PADRQKTRALIDFTMELAAAVRRYRPDLKTARNI 193 (294)
T ss_pred HH-HHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccC-----hhhHHHHHHHHHHHHHHHHHHHHhCccchhhhcc
Confidence 44 5688888888887 9999999 4553332221 0001122357778888888777643222
Q ss_pred --EEEecCcccccccccCHhhhccccceEEEEeccCCCCCCCCCCCCCCCCCCcccccccccccCHHHHHHHHHHhCCCC
Q psy4449 171 --TLTSPGVIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGARP 248 (2417)
Q Consensus 171 --sv~v~p~~~~~~~~yD~~~l~~~vD~v~l~~yd~~~~~~~~~p~~~~~~spl~~~~~~~~~~~v~~~v~~~l~~g~~~ 248 (2417)
...+.|..+..- +=++..+.+.-|++-+|+.-|.+.. . .+..++...|+.+.....+.
T Consensus 194 ya~pvl~P~se~Wf-AQnl~~fl~~YD~taimAMPymE~~--~-----------------~~~~WL~~Lv~~v~~~p~~l 253 (294)
T PF14883_consen 194 YAEPVLNPESEAWF-AQNLDDFLKAYDYTAIMAMPYMEQA--E-----------------DPEQWLAQLVDAVAARPGGL 253 (294)
T ss_pred cccccCCcchhhHH-HHhHHHHHHhCCeeheeccchhccc--c-----------------CHHHHHHHHHHHHHhcCCcc
Confidence 122223211110 2245666666799999988665322 0 23667888888888888888
Q ss_pred ccEEEecccc
Q psy4449 249 EQIIIGIPFF 258 (2417)
Q Consensus 249 sKivlGip~y 258 (2417)
+|+|+-+.+.
T Consensus 254 ~KtvFELQa~ 263 (294)
T PF14883_consen 254 DKTVFELQAV 263 (294)
T ss_pred cceEEEEecc
Confidence 9999877663
No 79
>PLN03244 alpha-amylase; Provisional
Probab=72.53 E-value=18 Score=49.90 Aligned_cols=64 Identities=20% Similarity=0.234 Sum_probs=45.9
Q ss_pred hHHHHHHHHhHhcCCEEEEEec-c------------CCCcCCCchh------------h--hhcCHHHHHHHHHHHHHHH
Q psy4449 1401 ILFYERVVTLKKKGVKVSLAIG-G------------WNDSLGGKYS------------R--LVNSATARQRFIEHVVKFL 1453 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~g~Kv~~sig-g------------w~~~~~~~~~------------~--~~~~~~~r~~fi~~iv~~l 1453 (2417)
++|.+.|.++|++||+|||=+= + +.++....|. . -..+++.|+-+++++.-.|
T Consensus 441 eDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yWl 520 (872)
T PLN03244 441 DDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWWI 520 (872)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHHH
Confidence 5788899999999999999321 1 1100000111 1 1235788999999999999
Q ss_pred HHcCCCccccc
Q psy4449 1454 LKYQFDGLDLD 1464 (2417)
Q Consensus 1454 ~~ygfDGvDlD 1464 (2417)
++|++||+-+|
T Consensus 521 eEyhIDGFRfD 531 (872)
T PLN03244 521 TEYQIDGFQFH 531 (872)
T ss_pred HHhCcCcceee
Confidence 99999999998
No 80
>KOG0260|consensus
Probab=72.52 E-value=14 Score=51.56 Aligned_cols=15 Identities=20% Similarity=0.696 Sum_probs=8.1
Q ss_pred HhhhCCcceEEEEec
Q psy4449 494 FLRRFDFAGLHFDWN 508 (2417)
Q Consensus 494 ~l~~ygfDGiDiDwE 508 (2417)
.+.+|.+..-+|||-
T Consensus 1022 v~~e~rls~eaf~w~ 1036 (1605)
T KOG0260|consen 1022 VLEEYRLSSEAFEWV 1036 (1605)
T ss_pred HHHHhcccHHHHHHH
Confidence 455555555555553
No 81
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=72.52 E-value=7.5 Score=46.64 Aligned_cols=95 Identities=20% Similarity=0.268 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHcCCCcccccc-CCccccc-ccc----CCCCC-ChhhHHHHHHHHHHHhcCCCceeEEEeecCC----
Q psy4449 1443 QRFIEHVVKFLLKYQFDGLDLDW-EYPTCWQ-VNC----DAGPD-SDKESFGLFVRELHQAFKPHGLLLSAAVSPS---- 1511 (2417)
Q Consensus 1443 ~~fi~~iv~~l~~ygfDGvDlD~-E~p~~~~-~~~----~~~~~-~d~~~~~~fv~eL~~~l~~~~~~ls~av~p~---- 1511 (2417)
-++--+|...+.+.|||-|.+|+ .||...+ ++- ++-.. .--+++..||...|++|. .-+|+++=..
T Consensus 195 WeYNvtIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE~l~---vpIS~DIYG~nGw~ 271 (400)
T COG1306 195 WEYNVTIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYAREELE---VPISADIYGQNGWS 271 (400)
T ss_pred hhhhHHHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHHhcc---cceEEEeecccCcc
Confidence 34556788889999999999998 7888433 110 11111 123678999999999995 5577776432
Q ss_pred hhhhccccchhhhcccCceEEeeecccCC
Q psy4449 1512 KQVINAAYDVKALSESLDWISVMTYDYHG 1540 (2417)
Q Consensus 1512 ~~~~~~~~d~~~l~~~vD~i~vMtYD~~g 1540 (2417)
.....-|.++..|+.|||.|..|-|=-|-
T Consensus 272 ~t~~~~GQ~~e~ls~yVDvIsPMfYPSHy 300 (400)
T COG1306 272 STDMALGQFWEALSSYVDVISPMFYPSHY 300 (400)
T ss_pred CCcchhhhhHHHHHhhhhhcccccccccc
Confidence 22233578999999999999999997764
No 82
>PRK14706 glycogen branching enzyme; Provisional
Probab=72.41 E-value=14 Score=51.15 Aligned_cols=99 Identities=20% Similarity=0.261 Sum_probs=60.9
Q ss_pred hhHHHHHHHHhHhcCCEEEEEe-cc---C--------CCc---------CCC--chhh---hhcCHHHHHHHHHHHHHHH
Q psy4449 1400 HILFYERVVTLKKKGVKVSLAI-GG---W--------NDS---------LGG--KYSR---LVNSATARQRFIEHVVKFL 1453 (2417)
Q Consensus 1400 ~~~~~~~v~~~k~~g~Kv~~si-gg---w--------~~~---------~~~--~~~~---~~~~~~~r~~fi~~iv~~l 1453 (2417)
.++|.+.|.++|++||+|+|-+ -+ + .++ .+. .+.. -..+++.|+-+++++.-.|
T Consensus 216 ~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~ 295 (639)
T PRK14706 216 PEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWL 295 (639)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHH
Confidence 3678999999999999999832 11 1 000 000 0000 1247899999999999999
Q ss_pred HHcCCCcccccc-C------Ccc-ccccccCCCCCChhhHHHHHHHHHHHhcCCC
Q psy4449 1454 LKYQFDGLDLDW-E------YPT-CWQVNCDAGPDSDKESFGLFVRELHQAFKPH 1500 (2417)
Q Consensus 1454 ~~ygfDGvDlD~-E------~p~-~~~~~~~~~~~~d~~~~~~fv~eL~~~l~~~ 1500 (2417)
++|++||+-||- . |-. -|-.+..++ .....=..|||+|++.++..
T Consensus 296 ~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg--~~n~~a~~fl~~ln~~v~~~ 348 (639)
T PRK14706 296 QDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGG--RENLEAIAFLKRLNEVTHHM 348 (639)
T ss_pred HHhCCCeEEEeeehheeecccCcccccccccCC--cccHHHHHHHHHHHHHHHHh
Confidence 999999999993 2 100 000111111 11233457899999888653
No 83
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=72.37 E-value=12 Score=46.73 Aligned_cols=109 Identities=10% Similarity=0.228 Sum_probs=62.3
Q ss_pred hhhhhccccCCCceEEEEecccccccccChHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCCCCchhhhhhhhHHHHH
Q psy4449 74 KSFLGLKEANPELKVYLAVKSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFS 153 (2417)
Q Consensus 74 ~~~~~LK~~~P~lkvlLsVGg~f~~~~~~~~~R~~fi~siv~~l~~~~fDGidl~W~~p~~~~~~~~~~~~~~~~r~~f~ 153 (2417)
+++...++.+++..|+++|++. +. ..+++ +++.+.++|+|+|+||+--|...... ....+.+...
T Consensus 87 ~~i~~~~~~~~~~pvi~si~g~------~~---~~~~~-~a~~~~~~G~d~ielN~~cP~~~~~~-----~~~~~~~~~~ 151 (289)
T cd02810 87 QDIAKAKKEFPGQPLIASVGGS------SK---EDYVE-LARKIERAGAKALELNLSCPNVGGGR-----QLGQDPEAVA 151 (289)
T ss_pred HHHHHHHhccCCCeEEEEeccC------CH---HHHHH-HHHHHHHhCCCEEEEEcCCCCCCCCc-----ccccCHHHHH
Confidence 3444444433678899999775 11 23443 45566778999999999877543210 1122334455
Q ss_pred HHHHHHHHHhhcCCcEEEEEecCcccccccccCH-hhhccc-cceEEEEe
Q psy4449 154 TFIQELSSTLRRNNYQLTLTSPGVIDRKTSLVDI-SVVAPL-VDLILLKS 201 (2417)
Q Consensus 154 ~ll~eL~~~l~~~~~~Lsv~v~p~~~~~~~~yD~-~~l~~~-vD~v~l~~ 201 (2417)
.+|+++|+++ ++.|++-+.+... .++..++ +.+.+. +|+|.+..
T Consensus 152 eiv~~vr~~~---~~pv~vKl~~~~~-~~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 152 NLLKAVKAAV---DIPLLVKLSPYFD-LEDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred HHHHHHHHcc---CCCEEEEeCCCCC-HHHHHHHHHHHHHcCCCEEEEEc
Confidence 6677777665 4567777776531 1112122 223332 79998874
No 84
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=71.93 E-value=13 Score=51.52 Aligned_cols=84 Identities=17% Similarity=0.307 Sum_probs=57.0
Q ss_pred hHHHHHHHHhHhcCCEEEEE-ecc---------CCCcCCCchh----------------hh-hcCHHHHHHHHHHHHHHH
Q psy4449 1401 ILFYERVVTLKKKGVKVSLA-IGG---------WNDSLGGKYS----------------RL-VNSATARQRFIEHVVKFL 1453 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~g~Kv~~s-igg---------w~~~~~~~~~----------------~~-~~~~~~r~~fi~~iv~~l 1453 (2417)
++|.+-|.++|++||+||+= |-+ +.+.....|. .+ ..++..|+-+++++.-.+
T Consensus 229 ~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~ 308 (605)
T TIGR02104 229 RELKQMIQALHENGIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWV 308 (605)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHH
Confidence 67999999999999999992 221 0000000110 11 136788999999999999
Q ss_pred HHcCCCccccccCCccccccccCCCCCChhhHHHHHHHHHHHhcCCC
Q psy4449 1454 LKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPH 1500 (2417)
Q Consensus 1454 ~~ygfDGvDlD~E~p~~~~~~~~~~~~~d~~~~~~fv~eL~~~l~~~ 1500 (2417)
++||+||+-||.=. .-+ ..|+++|++++++.
T Consensus 309 ~e~~iDGfR~D~~~------------~~~----~~~~~~~~~~~~~~ 339 (605)
T TIGR02104 309 KEYNIDGFRFDLMG------------IHD----IETMNEIRKALNKI 339 (605)
T ss_pred HHcCCCEEEEechh------------cCC----HHHHHHHHHHHHhh
Confidence 99999999999541 111 34788888877653
No 85
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=71.90 E-value=11 Score=41.38 Aligned_cols=62 Identities=18% Similarity=0.379 Sum_probs=45.1
Q ss_pred HHHHHHHHHhCCCEEEEE--EcCCCCC-------------CC----------cchhHhhcCHHHHHHHHHHHHHHHHHcC
Q psy4449 1770 FYEKVTALKKKGVKVTLA--IGGWNDS-------------AG----------NKYSRLVNSQQARSKFIAHVVNFILEHN 1824 (2417)
Q Consensus 1770 ~~~~i~~lk~~glKvlls--IGGw~~s-------------~~----------~~fs~~~~~~~~R~~Fi~siv~~l~~yg 1824 (2417)
+-+.|.++|++|++|++- ++ |... .+ ..+..+--|..-|+.++..|-+++++|+
T Consensus 46 lge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y~ 124 (132)
T PF14871_consen 46 LGEQVEACHERGIRVPAYFDFS-WDEDAAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRYD 124 (132)
T ss_pred HHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcCC
Confidence 567899999999999954 44 3210 00 1144455566778888888888999999
Q ss_pred CCeEEEee
Q psy4449 1825 FDGLDLDW 1832 (2417)
Q Consensus 1825 fDGiDiDw 1832 (2417)
+|||-|||
T Consensus 125 ~DGiF~D~ 132 (132)
T PF14871_consen 125 VDGIFFDI 132 (132)
T ss_pred CCEEEecC
Confidence 99999997
No 86
>PRK12313 glycogen branching enzyme; Provisional
Probab=71.79 E-value=11 Score=52.56 Aligned_cols=98 Identities=21% Similarity=0.316 Sum_probs=60.5
Q ss_pred hhHHHHHHHHhHhcCCEEEEE-eccC-----------CCc---------CCC--chh-hh--hcCHHHHHHHHHHHHHHH
Q psy4449 1400 HILFYERVVTLKKKGVKVSLA-IGGW-----------NDS---------LGG--KYS-RL--VNSATARQRFIEHVVKFL 1453 (2417)
Q Consensus 1400 ~~~~~~~v~~~k~~g~Kv~~s-iggw-----------~~~---------~~~--~~~-~~--~~~~~~r~~fi~~iv~~l 1453 (2417)
.++|.+.|.++|++||||+|= |-+- .+. .+. .+. .. ..++..|+-+++.+.-.|
T Consensus 219 ~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~ 298 (633)
T PRK12313 219 PEDFMYLVDALHQNGIGVILDWVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWL 298 (633)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHH
Confidence 367899999999999999993 2210 000 000 000 01 137899999999999999
Q ss_pred HHcCCCccccccC----C-----ccccccccCCCCCChhhHHHHHHHHHHHhcCC
Q psy4449 1454 LKYQFDGLDLDWE----Y-----PTCWQVNCDAGPDSDKESFGLFVRELHQAFKP 1499 (2417)
Q Consensus 1454 ~~ygfDGvDlD~E----~-----p~~~~~~~~~~~~~d~~~~~~fv~eL~~~l~~ 1499 (2417)
++||+||+-||-= | +..|+.+..++. .+. .=..|+++|++.++.
T Consensus 299 ~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~-~~~-~~~~fl~~~~~~v~~ 351 (633)
T PRK12313 299 DEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGR-ENL-EAIYFLQKLNEVVYL 351 (633)
T ss_pred HHhCCcEEEEcChhhhhhcccccccCcCCcccCCC-CCc-HHHHHHHHHHHHHHH
Confidence 9999999999921 0 011111111121 222 236799999888864
No 87
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=71.05 E-value=20 Score=49.99 Aligned_cols=64 Identities=19% Similarity=0.353 Sum_probs=45.5
Q ss_pred hHHHHHHHHhHhcCCEEEEEec----------c---CCCcCCCchh------------hhh--cCHHHHHHHHHHHHHHH
Q psy4449 1401 ILFYERVVTLKKKGVKVSLAIG----------G---WNDSLGGKYS------------RLV--NSATARQRFIEHVVKFL 1453 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~g~Kv~~sig----------g---w~~~~~~~~~------------~~~--~~~~~r~~fi~~iv~~l 1453 (2417)
++|.+.|.+++++||+||+=|= | +....+..|. ..+ .++..|+-+++++.-.|
T Consensus 300 ~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl 379 (758)
T PLN02447 300 EDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWL 379 (758)
T ss_pred HHHHHHHHHHHHCCCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHH
Confidence 6788999999999999999321 1 1110001111 012 35788999999999999
Q ss_pred HHcCCCccccc
Q psy4449 1454 LKYQFDGLDLD 1464 (2417)
Q Consensus 1454 ~~ygfDGvDlD 1464 (2417)
++|++||+-||
T Consensus 380 ~ey~IDGfRfD 390 (758)
T PLN02447 380 EEYKFDGFRFD 390 (758)
T ss_pred HHhCccccccc
Confidence 99999999998
No 88
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=70.51 E-value=13 Score=50.74 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEEcC----CCCCC----CcchhH----------hhcCH---HHHHHHHHHHHHHHHHcCCC
Q psy4449 1768 NKFYEKVTALKKKGVKVTLAIGG----WNDSA----GNKYSR----------LVNSQ---QARSKFIAHVVNFILEHNFD 1826 (2417)
Q Consensus 1768 ~~~~~~i~~lk~~glKvllsIGG----w~~s~----~~~fs~----------~~~~~---~~R~~Fi~siv~~l~~ygfD 1826 (2417)
.+|.+.|.++|++|++|||=+== ..... ...|.. -..++ ..|+-+++++.-+|++|++|
T Consensus 160 ~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iD 239 (542)
T TIGR02402 160 DDLKALVDAAHGLGLGVILDVVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHFD 239 (542)
T ss_pred HHHHHHHHHHHHCCCEEEEEEccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCc
Confidence 56888999999999999976521 00000 001110 12234 88899999999999999999
Q ss_pred eEEEeec
Q psy4449 1827 GLDLDWE 1833 (2417)
Q Consensus 1827 GiDiDwE 1833 (2417)
|+-||--
T Consensus 240 GfR~D~~ 246 (542)
T TIGR02402 240 GLRLDAV 246 (542)
T ss_pred EEEEeCH
Confidence 9999953
No 89
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=69.78 E-value=8.8 Score=46.08 Aligned_cols=91 Identities=18% Similarity=0.282 Sum_probs=61.4
Q ss_pred HHHHHHhhhCCcceEEEEe-cCCCccCCcCCC------CCcchhhhHHHHHHHHHHHhccCCcceEeeccchhh----hh
Q psy4449 489 KSVLTFLRRFDFAGLHFDW-NYPVCWQADCSK------QHKADKGNFVKLIQELKAEFDKHDYSIAVGISGYKE----IL 557 (2417)
Q Consensus 489 ~svv~~l~~ygfDGiDiDw-EyP~~~~~~~~~------~~~~d~~nf~~ll~eLR~~f~~~~~~Lsvav~~~~~----~~ 557 (2417)
-++.+-..++|||-|.||. .||...+.-... ..-...+.+..||.--|+++. ..||+.+-++.. ..
T Consensus 199 vtIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE~l~---vpIS~DIYG~nGw~~t~~ 275 (400)
T COG1306 199 VTIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYAREELE---VPISADIYGQNGWSSTDM 275 (400)
T ss_pred HHHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHHhcc---cceEEEeecccCccCCcc
Confidence 3566677888999999995 799754321111 111223567788888888886 467776644322 22
Q ss_pred hhcCCccccccccceEEEEeeccCC
Q psy4449 558 EVAYDFPALNDHVEFMSLMSYDYHG 582 (2417)
Q Consensus 558 ~~~yd~~~l~~~vD~i~vMtYD~~g 582 (2417)
..+-+++.|+.|||+|.-|.|--|-
T Consensus 276 ~~GQ~~e~ls~yVDvIsPMfYPSHy 300 (400)
T COG1306 276 ALGQFWEALSSYVDVISPMFYPSHY 300 (400)
T ss_pred hhhhhHHHHHhhhhhcccccccccc
Confidence 2456899999999999999998654
No 90
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=69.22 E-value=19 Score=51.33 Aligned_cols=66 Identities=26% Similarity=0.427 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEE-------cCCCCCC------CcchhH----------------hhcCHHHHHHHHHHHHH
Q psy4449 1768 NKFYEKVTALKKKGVKVTLAI-------GGWNDSA------GNKYSR----------------LVNSQQARSKFIAHVVN 1818 (2417)
Q Consensus 1768 ~~~~~~i~~lk~~glKvllsI-------GGw~~s~------~~~fs~----------------~~~~~~~R~~Fi~siv~ 1818 (2417)
.+|.+.|++||++|++|||=| +|..... ...|.+ ...++..|+-+++++.-
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~ 483 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVV 483 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHH
Confidence 468888999999999999755 2321100 001111 12357888999999999
Q ss_pred HHHHcCCCeEEEeec
Q psy4449 1819 FILEHNFDGLDLDWE 1833 (2417)
Q Consensus 1819 ~l~~ygfDGiDiDwE 1833 (2417)
|+++|++||+-||.-
T Consensus 484 W~~ey~VDGFRfDlm 498 (898)
T TIGR02103 484 WAKDYKVDGFRFDLM 498 (898)
T ss_pred HHHHcCCCEEEEech
Confidence 999999999999976
No 91
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=68.85 E-value=13 Score=52.93 Aligned_cols=66 Identities=27% Similarity=0.440 Sum_probs=47.2
Q ss_pred hHHHHHHHHhHhcCCEEEE-------EeccCCCc------CCCchhh----------------hhcCHHHHHHHHHHHHH
Q psy4449 1401 ILFYERVVTLKKKGVKVSL-------AIGGWNDS------LGGKYSR----------------LVNSATARQRFIEHVVK 1451 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~g~Kv~~-------siggw~~~------~~~~~~~----------------~~~~~~~r~~fi~~iv~ 1451 (2417)
.+|.+-|.++|++||+||+ +-+|+... ....|.+ -..++..|+-+++++.-
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~ 483 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVV 483 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999 22222110 0011111 11257788999999999
Q ss_pred HHHHcCCCccccccC
Q psy4449 1452 FLLKYQFDGLDLDWE 1466 (2417)
Q Consensus 1452 ~l~~ygfDGvDlD~E 1466 (2417)
.+++|++||+-||.=
T Consensus 484 W~~ey~VDGFRfDlm 498 (898)
T TIGR02103 484 WAKDYKVDGFRFDLM 498 (898)
T ss_pred HHHHcCCCEEEEech
Confidence 999999999999965
No 92
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=68.70 E-value=19 Score=52.42 Aligned_cols=66 Identities=23% Similarity=0.387 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhCCCEEEEEEcC-------C-CCCCCcchh---------------Hh-hcCHHHHHHHHHHHHHHHHHc
Q psy4449 1768 NKFYEKVTALKKKGVKVTLAIGG-------W-NDSAGNKYS---------------RL-VNSQQARSKFIAHVVNFILEH 1823 (2417)
Q Consensus 1768 ~~~~~~i~~lk~~glKvllsIGG-------w-~~s~~~~fs---------------~~-~~~~~~R~~Fi~siv~~l~~y 1823 (2417)
.+|.+.|.+||++|++|||=|== . .......|. .+ ..++..|+-+++++.-++++|
T Consensus 555 ~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey 634 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEF 634 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 46888999999999999976411 0 000000010 01 135788899999999999999
Q ss_pred CCCeEEEeec
Q psy4449 1824 NFDGLDLDWE 1833 (2417)
Q Consensus 1824 gfDGiDiDwE 1833 (2417)
++||+-||.-
T Consensus 635 ~VDGFRfDl~ 644 (1111)
T TIGR02102 635 KVDGFRFDMM 644 (1111)
T ss_pred CCcEEEEecc
Confidence 9999999975
No 93
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=68.34 E-value=15 Score=47.30 Aligned_cols=98 Identities=12% Similarity=0.206 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEEecC---------CCCCCCCCchhhhhhhhHHHHH-HHHHHHHHHhhc---CCcEE
Q psy4449 104 ESRLNFISSVLEMFDMYKFDGLDLNVKD---------PALNDEDDDDLESIANERSDFS-TFIQELSSTLRR---NNYQL 170 (2417)
Q Consensus 104 ~~R~~fi~siv~~l~~~~fDGidl~W~~---------p~~~~~~~~~~~~~~~~r~~f~-~ll~eL~~~l~~---~~~~L 170 (2417)
.-.+.|++++.. +++-|||||+|+--+ |..+.+.+ .-+++.+.|..|. ..|+++|+++.. ..+.|
T Consensus 141 ~ii~~f~~aA~~-a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D-~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v 218 (353)
T cd04735 141 DIIDAFGEATRR-AIEAGFDGVEIHGANGYLIQQFFSPHSNRRTD-EWGGSLENRMRFPLAVVKAVQEVIDKHADKDFIL 218 (353)
T ss_pred HHHHHHHHHHHH-HHHcCCCEEEEccccchHHHHhcCCccCCCCc-ccCCcHHHHHHHHHHHHHHHHHHhccccCCCceE
Confidence 344577776655 566899999998643 65555433 3335566666655 678888888862 46778
Q ss_pred EEEecCcccccccccC------H-hhhccc-cceEEEEeccC
Q psy4449 171 TLTSPGVIDRKTSLVD------I-SVVAPL-VDLILLKSFNN 204 (2417)
Q Consensus 171 sv~v~p~~~~~~~~yD------~-~~l~~~-vD~v~l~~yd~ 204 (2417)
.+-+.+.. ......+ + +.|.+. +|+|.+....+
T Consensus 219 ~~R~s~~~-~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~ 259 (353)
T cd04735 219 GYRFSPEE-PEEPGIRMEDTLALVDKLADKGLDYLHISLWDF 259 (353)
T ss_pred EEEECccc-ccCCCCCHHHHHHHHHHHHHcCCCEEEeccCcc
Confidence 88877643 1122222 2 344333 79999987544
No 94
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=68.01 E-value=23 Score=49.04 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=46.6
Q ss_pred hHHHHHHHHhHhcCCEEEEE-eccCC-----------Cc--------C-C--Cchhh---hhcCHHHHHHHHHHHHHHHH
Q psy4449 1401 ILFYERVVTLKKKGVKVSLA-IGGWN-----------DS--------L-G--GKYSR---LVNSATARQRFIEHVVKFLL 1454 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~g~Kv~~s-iggw~-----------~~--------~-~--~~~~~---~~~~~~~r~~fi~~iv~~l~ 1454 (2417)
++|.+.|.++|++|||||+= |-+-. +. . + ..+.. -..++..|+-+++.+.-.|+
T Consensus 206 ~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ 285 (613)
T TIGR01515 206 DDFMYFVDACHQAGIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAE 285 (613)
T ss_pred HHHHHHHHHHHHCCCEEEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHH
Confidence 57899999999999999993 22110 00 0 0 00000 11468999999999999999
Q ss_pred HcCCCcccccc
Q psy4449 1455 KYQFDGLDLDW 1465 (2417)
Q Consensus 1455 ~ygfDGvDlD~ 1465 (2417)
+|++||+-||-
T Consensus 286 ey~iDG~R~D~ 296 (613)
T TIGR01515 286 FYHIDGLRVDA 296 (613)
T ss_pred HhCCcEEEEcC
Confidence 99999999995
No 95
>PRK14705 glycogen branching enzyme; Provisional
Probab=67.94 E-value=19 Score=52.91 Aligned_cols=97 Identities=21% Similarity=0.314 Sum_probs=61.9
Q ss_pred hHHHHHHHHhHhcCCEEEEEe-cc------CC-----Cc------C---C--Cchhh---hhcCHHHHHHHHHHHHHHHH
Q psy4449 1401 ILFYERVVTLKKKGVKVSLAI-GG------WN-----DS------L---G--GKYSR---LVNSATARQRFIEHVVKFLL 1454 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~g~Kv~~si-gg------w~-----~~------~---~--~~~~~---~~~~~~~r~~fi~~iv~~l~ 1454 (2417)
++|.+.|.++|++||+||+=+ -+ |. +. . + ..+.. -..++..|+-+|+++.-.|+
T Consensus 815 ~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~ 894 (1224)
T PRK14705 815 DEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLD 894 (1224)
T ss_pred HHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHH
Confidence 678999999999999999931 11 11 00 0 0 00000 12478899999999999999
Q ss_pred HcCCCccccccC-------C---ccccccccCCCCCChhhHHHHHHHHHHHhcCC
Q psy4449 1455 KYQFDGLDLDWE-------Y---PTCWQVNCDAGPDSDKESFGLFVRELHQAFKP 1499 (2417)
Q Consensus 1455 ~ygfDGvDlD~E-------~---p~~~~~~~~~~~~~d~~~~~~fv~eL~~~l~~ 1499 (2417)
+|++||+-+|-- | ++.|..+..++. ++ ..=+.||++|.+.++.
T Consensus 895 eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~-en-~~ai~fl~~ln~~v~~ 947 (1224)
T PRK14705 895 EFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGR-EN-LEAISFLQEVNATVYK 947 (1224)
T ss_pred HhCCCcEEEeehhhhhhcccccccccccccccCCc-cC-hHHHHHHHHHHHHHHH
Confidence 999999999852 1 122322222222 12 2236799999988864
No 96
>PRK05402 glycogen branching enzyme; Provisional
Probab=67.82 E-value=23 Score=50.12 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHhCCCEEEEEEc----CCC------CCCCc-------------chh---HhhcCHHHHHHHHHHHHHHH
Q psy4449 1767 DNKFYEKVTALKKKGVKVTLAIG----GWN------DSAGN-------------KYS---RLVNSQQARSKFIAHVVNFI 1820 (2417)
Q Consensus 1767 ~~~~~~~i~~lk~~glKvllsIG----Gw~------~s~~~-------------~fs---~~~~~~~~R~~Fi~siv~~l 1820 (2417)
..+|.+.|.++|++|++|||=+= |.. ..+.. .+. --..+++.|+-+++++.-+|
T Consensus 314 ~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~ 393 (726)
T PRK05402 314 PDDFRYFVDACHQAGIGVILDWVPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWL 393 (726)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHH
Confidence 35788999999999999998651 000 00000 010 02357899999999999999
Q ss_pred HHcCCCeEEEe
Q psy4449 1821 LEHNFDGLDLD 1831 (2417)
Q Consensus 1821 ~~ygfDGiDiD 1831 (2417)
++|++||+-||
T Consensus 394 ~e~~iDG~R~D 404 (726)
T PRK05402 394 EEFHIDGLRVD 404 (726)
T ss_pred HHhCCcEEEEC
Confidence 99999999999
No 97
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.71 E-value=7.9 Score=49.96 Aligned_cols=97 Identities=18% Similarity=0.357 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHhhhCCcceEEEE--ecCCCccCCcCC----------CCCcch--------hhhHHHHHHHHHHHhc
Q psy4449 481 GSNRKKFIKSVLTFLRRFDFAGLHFD--WNYPVCWQADCS----------KQHKAD--------KGNFVKLIQELKAEFD 540 (2417)
Q Consensus 481 ~~~R~~fi~svv~~l~~ygfDGiDiD--wEyP~~~~~~~~----------~~~~~d--------~~nf~~ll~eLR~~f~ 540 (2417)
++-|+-..+-+++.+++|.+|||.|| |=||..+|.+.. .....+ ++|-.+||+.|-...+
T Consensus 181 Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VK 260 (418)
T COG1649 181 PEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVK 260 (418)
T ss_pred hHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 56666666678889999999999999 557766554321 112222 3578899999999998
Q ss_pred cCC--cceEeec-cchhhhhhhcCCc--------cccccccceEEEEeec
Q psy4449 541 KHD--YSIAVGI-SGYKEILEVAYDF--------PALNDHVEFMSLMSYD 579 (2417)
Q Consensus 541 ~~~--~~Lsvav-~~~~~~~~~~yd~--------~~l~~~vD~i~vMtYD 579 (2417)
+.. ..+++++ +.... ..-.|+. .. .-++|++-.|.|-
T Consensus 261 avKp~v~~svsp~n~~~~-~~f~y~~~~qDw~~Wv~-~G~iD~l~pqvYr 308 (418)
T COG1649 261 AVKPNVKFSVSPFNPLGS-ATFAYDYFLQDWRRWVR-QGLIDELAPQVYR 308 (418)
T ss_pred hhCCCeEEEEccCCCCCc-cceehhhhhhhHHHHHH-cccHhhhhhhhhc
Confidence 765 6666666 31111 0001221 11 3467888888875
No 98
>PRK14706 glycogen branching enzyme; Provisional
Probab=67.44 E-value=34 Score=47.51 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHhCCCEEEEEEc----CCCC------CCCc-------------chhH---hhcCHHHHHHHHHHHHHHH
Q psy4449 1767 DNKFYEKVTALKKKGVKVTLAIG----GWND------SAGN-------------KYSR---LVNSQQARSKFIAHVVNFI 1820 (2417)
Q Consensus 1767 ~~~~~~~i~~lk~~glKvllsIG----Gw~~------s~~~-------------~fs~---~~~~~~~R~~Fi~siv~~l 1820 (2417)
..+|...|.++|++|++|||=+= |+.. .++. .|.. -..+++.|+-+++++.-+|
T Consensus 216 ~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~ 295 (639)
T PRK14706 216 PEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWL 295 (639)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHH
Confidence 35688999999999999997651 1100 0000 0111 1347899999999999999
Q ss_pred HHcCCCeEEEe
Q psy4449 1821 LEHNFDGLDLD 1831 (2417)
Q Consensus 1821 ~~ygfDGiDiD 1831 (2417)
+++++||+-||
T Consensus 296 ~e~~iDG~R~D 306 (639)
T PRK14706 296 QDFHVDGLRVD 306 (639)
T ss_pred HHhCCCeEEEe
Confidence 99999999999
No 99
>PF03427 CBM_19: Carbohydrate binding domain (family 19); InterPro: IPR005089 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM19 from CAZY which consists of 60-70 residues with chitin-binding function.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process
Probab=66.75 E-value=9.1 Score=35.66 Aligned_cols=21 Identities=38% Similarity=0.812 Sum_probs=19.4
Q ss_pred CcceEccCCeEEEEeCCCCCc
Q psy4449 2142 AKFASCENGLIKIYDCPPGLH 2162 (2417)
Q Consensus 2142 ~~~y~C~~g~~~~~~C~~g~~ 2162 (2417)
.+|-+|.+|.+..+.||+|+.
T Consensus 35 G~faiC~~G~Wv~~~C~~Gt~ 55 (61)
T PF03427_consen 35 GSFAICDHGTWVITPCPAGTT 55 (61)
T ss_pred CCEEEcCCCcEEEeeCCCCCE
Confidence 379999999999999999996
No 100
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=66.41 E-value=30 Score=44.64 Aligned_cols=95 Identities=14% Similarity=0.144 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEecC---------CCCCCCCCchhhhhhhhHHHH-HHHHHHHHHHhhcCCcEEEEEe
Q psy4449 105 SRLNFISSVLEMFDMYKFDGLDLNVKD---------PALNDEDDDDLESIANERSDF-STFIQELSSTLRRNNYQLTLTS 174 (2417)
Q Consensus 105 ~R~~fi~siv~~l~~~~fDGidl~W~~---------p~~~~~~~~~~~~~~~~r~~f-~~ll~eL~~~l~~~~~~Lsv~v 174 (2417)
-.+.|++.+. .+++-|||||+|+=-+ |..+.+.+.+. ++-+.|..| ...|+.+|++... .+.|.+-+
T Consensus 142 ii~~f~~AA~-~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYG-GslenR~Rf~~eii~air~~vG~-d~~v~vRi 218 (361)
T cd04747 142 VIAAFARAAA-DARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYG-GSLAARSRFAAEVVKAIRAAVGP-DFPIILRF 218 (361)
T ss_pred HHHHHHHHHH-HHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHcCC-CCeEEEEE
Confidence 3456776554 5566799999998766 76666544333 455555433 3455555555432 36778777
Q ss_pred cCccc-cc--ccccCH-------hhhccc-cceEEEEec
Q psy4449 175 PGVID-RK--TSLVDI-------SVVAPL-VDLILLKSF 202 (2417)
Q Consensus 175 ~p~~~-~~--~~~yD~-------~~l~~~-vD~v~l~~y 202 (2417)
.+... .. ....++ ..|.+. +|+|++...
T Consensus 219 s~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g 257 (361)
T cd04747 219 SQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTR 257 (361)
T ss_pred CcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 76320 10 112232 222333 799988764
No 101
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=66.06 E-value=24 Score=45.27 Aligned_cols=94 Identities=13% Similarity=0.194 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEecC---------CCCCCCCCchhhhhhhhHHHHH-HHHHHHHHHhhcCCcEEEEEe
Q psy4449 105 SRLNFISSVLEMFDMYKFDGLDLNVKD---------PALNDEDDDDLESIANERSDFS-TFIQELSSTLRRNNYQLTLTS 174 (2417)
Q Consensus 105 ~R~~fi~siv~~l~~~~fDGidl~W~~---------p~~~~~~~~~~~~~~~~r~~f~-~ll~eL~~~l~~~~~~Lsv~v 174 (2417)
-.+.|++.+ ..+++.|||||+|+--+ |..+.+.+ .-+++-+.|..|. ..|+++|+++. .++.|.+-+
T Consensus 147 ~i~~~~~aA-~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D-~yGGslenR~rf~~EiI~aIR~avG-~d~~v~vri 223 (338)
T cd04733 147 VIDRFAHAA-RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTD-EYGGSLENRARLLLEIYDAIRAAVG-PGFPVGIKL 223 (338)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCc-cCCCCHHHHHHHHHHHHHHHHHHcC-CCCeEEEEE
Confidence 345677655 45788899999998665 66555433 3345566665554 67777777764 346677766
Q ss_pred cCcccccccccCH-------hhhccc-cceEEEEec
Q psy4449 175 PGVIDRKTSLVDI-------SVVAPL-VDLILLKSF 202 (2417)
Q Consensus 175 ~p~~~~~~~~yD~-------~~l~~~-vD~v~l~~y 202 (2417)
.+.. .....++. +.|.+. +|+|.+..-
T Consensus 224 s~~~-~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g 258 (338)
T cd04733 224 NSAD-FQRGGFTEEDALEVVEALEEAGVDLVELSGG 258 (338)
T ss_pred cHHH-cCCCCCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 5421 11222332 344444 799988764
No 102
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=64.70 E-value=15 Score=47.52 Aligned_cols=157 Identities=13% Similarity=0.083 Sum_probs=86.8
Q ss_pred CccEEEEeeeeecCCCccccc--cCccchhhhchhhhhhhccccCCCceEEEEe--ccccc-------------------
Q psy4449 41 TCTHVIYAYAAIDPVSRALIP--EDLEYDVIKGGYKSFLGLKEANPELKVYLAV--KSNFV------------------- 97 (2417)
Q Consensus 41 ~CTHviY~~a~ld~~~~~~~~--~~~~~D~~~~~y~~~~~LK~~~P~lkvlLsV--Gg~f~------------------- 97 (2417)
-+--||-..+.+++++..... ...+-|-.-.++++++..-+++ +.|+++-| +|...
T Consensus 51 G~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~-G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~ 129 (370)
T cd02929 51 GWGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLAAMTDAVHKH-GALAGIELWHGGAHAPNRESRETPLGPSQLPSEF 129 (370)
T ss_pred CceEEEEeeeEEccccccCcccCcCcCCHHHHHHHHHHHHHHHHC-CCeEEEecccCCCCCCccCCCCCccCCCCCCCCc
Confidence 345677777777766432211 1122333345778887644444 67888777 33110
Q ss_pred --------c-cccC--hHHHHHHHHHHHHHHHhcCCCceEEEecC---------CCCCCCCCchhhhhhhhHHHH-HHHH
Q psy4449 98 --------S-ITSD--RESRLNFISSVLEMFDMYKFDGLDLNVKD---------PALNDEDDDDLESIANERSDF-STFI 156 (2417)
Q Consensus 98 --------~-~~~~--~~~R~~fi~siv~~l~~~~fDGidl~W~~---------p~~~~~~~~~~~~~~~~r~~f-~~ll 156 (2417)
+ |..+ ..-.+.|++.+. .+++-|||||+|+--+ |..+.+.+ .-+++.+.|..| ...|
T Consensus 130 ~~~~~~~p~~mt~~eI~~ii~~f~~AA~-ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD-~yGGslenR~Rf~~eii 207 (370)
T cd02929 130 PTGGPVQAREMDKDDIKRVRRWYVDAAL-RARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTD-EYGGSLENRARFWRETL 207 (370)
T ss_pred cccCCCCCccCCHHHHHHHHHHHHHHHH-HHHHcCCCEEEEcccccchHHHhhCccccCCcc-ccCCChHhhhHHHHHHH
Confidence 0 0000 134567777554 5666899999998776 66544433 334555656444 4566
Q ss_pred HHHHHHhhcCCcEEEEEecCcccc-------cccccCH-hhhccccceEEEEe
Q psy4449 157 QELSSTLRRNNYQLTLTSPGVIDR-------KTSLVDI-SVVAPLVDLILLKS 201 (2417)
Q Consensus 157 ~eL~~~l~~~~~~Lsv~v~p~~~~-------~~~~yD~-~~l~~~vD~v~l~~ 201 (2417)
+++|++... .+.|.+-+.+.... .++..++ +.|.+.+|++.+..
T Consensus 208 ~aIr~~vg~-~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~~D~i~vs~ 259 (370)
T cd02929 208 EDTKDAVGD-DCAVATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVNV 259 (370)
T ss_pred HHHHHHcCC-CceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHhhCCEEEecC
Confidence 667776643 56777777764311 1111112 44556688888764
No 103
>PRK12313 glycogen branching enzyme; Provisional
Probab=64.65 E-value=33 Score=47.91 Aligned_cols=65 Identities=23% Similarity=0.261 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHhCCCEEEEEEcC-------C---CCCCCcc-------------hh-H--hhcCHHHHHHHHHHHHHHH
Q psy4449 1767 DNKFYEKVTALKKKGVKVTLAIGG-------W---NDSAGNK-------------YS-R--LVNSQQARSKFIAHVVNFI 1820 (2417)
Q Consensus 1767 ~~~~~~~i~~lk~~glKvllsIGG-------w---~~s~~~~-------------fs-~--~~~~~~~R~~Fi~siv~~l 1820 (2417)
..+|.+.|.++|++|++|||=+== + ....... |. . -..+++.|+-+++++.-+|
T Consensus 219 ~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~ 298 (633)
T PRK12313 219 PEDFMYLVDALHQNGIGVILDWVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWL 298 (633)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHH
Confidence 357889999999999999986510 0 0000000 10 0 1247899999999999999
Q ss_pred HHcCCCeEEEe
Q psy4449 1821 LEHNFDGLDLD 1831 (2417)
Q Consensus 1821 ~~ygfDGiDiD 1831 (2417)
++|++||+-||
T Consensus 299 ~~~~iDG~R~D 309 (633)
T PRK12313 299 DEYHLDGLRVD 309 (633)
T ss_pred HHhCCcEEEEc
Confidence 99999999999
No 104
>PRK12568 glycogen branching enzyme; Provisional
Probab=63.15 E-value=33 Score=47.91 Aligned_cols=99 Identities=15% Similarity=0.288 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHhCCCEEEEEEcCC----------CCCCCc-------------chhH---hhcCHHHHHHHHHHHHHHH
Q psy4449 1767 DNKFYEKVTALKKKGVKVTLAIGGW----------NDSAGN-------------KYSR---LVNSQQARSKFIAHVVNFI 1820 (2417)
Q Consensus 1767 ~~~~~~~i~~lk~~glKvllsIGGw----------~~s~~~-------------~fs~---~~~~~~~R~~Fi~siv~~l 1820 (2417)
..+|...|.++|++|++|||=+==. ...+.. .|.. -..+++.|+-+++++.-+|
T Consensus 318 ~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl 397 (730)
T PRK12568 318 PDGFAQFVDACHRAGIGVILDWVSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWI 397 (730)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHH
Confidence 3578899999999999999865210 000000 0111 2457889999999999999
Q ss_pred HHcCCCeEEEee-------cCC---CCccCCCCCCCcchhhhHHHHHHHHHHhcCCC
Q psy4449 1821 LEHNFDGLDLDW-------EYP---KCWQVDCKQGPASDKQGFADLIKELRAAFNPH 1867 (2417)
Q Consensus 1821 ~~ygfDGiDiDw-------EyP---~~~~~~~~~~~~~d~~~~~~llkeLr~~l~~~ 1867 (2417)
++|++||+-||= .|- +.|..+..++ .++. .-+.||++|++.++..
T Consensus 398 ~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg-~en~-ea~~Fl~~ln~~v~~~ 452 (730)
T PRK12568 398 EHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGG-RENL-EAVAFLRQLNREIASQ 452 (730)
T ss_pred HHhCceEEEEcCHhHhhhhccccccccccccccCC-ccCh-HHHHHHHHHHHHHHHH
Confidence 999999999992 221 1111111111 1111 2357888888888653
No 105
>PLN03244 alpha-amylase; Provisional
Probab=62.74 E-value=52 Score=45.72 Aligned_cols=64 Identities=20% Similarity=0.255 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEEcC----CC--------CCCC-cchh------------H--hhcCHHHHHHHHHHHHHHH
Q psy4449 1768 NKFYEKVTALKKKGVKVTLAIGG----WN--------DSAG-NKYS------------R--LVNSQQARSKFIAHVVNFI 1820 (2417)
Q Consensus 1768 ~~~~~~i~~lk~~glKvllsIGG----w~--------~s~~-~~fs------------~--~~~~~~~R~~Fi~siv~~l 1820 (2417)
.+|...|.++|++|++|||=|-- .+ ++.. ..|. . -...++.|+-+++++.-+|
T Consensus 441 eDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yWl 520 (872)
T PLN03244 441 DDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWWI 520 (872)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHHH
Confidence 46888999999999999987521 00 0000 0111 0 1235788999999999999
Q ss_pred HHcCCCeEEEe
Q psy4449 1821 LEHNFDGLDLD 1831 (2417)
Q Consensus 1821 ~~ygfDGiDiD 1831 (2417)
++|++||+-||
T Consensus 521 eEyhIDGFRfD 531 (872)
T PLN03244 521 TEYQIDGFQFH 531 (872)
T ss_pred HHhCcCcceee
Confidence 99999999999
No 106
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=62.52 E-value=31 Score=44.14 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=84.2
Q ss_pred ccEEEEeeeeecCCCccccccC--ccchhhhchhhhhhhccccCCCceEEEEe--cccccc-------------------
Q psy4449 42 CTHVIYAYAAIDPVSRALIPED--LEYDVIKGGYKSFLGLKEANPELKVYLAV--KSNFVS------------------- 98 (2417)
Q Consensus 42 CTHviY~~a~ld~~~~~~~~~~--~~~D~~~~~y~~~~~LK~~~P~lkvlLsV--Gg~f~~------------------- 98 (2417)
+.-||-..+.+++.+... +.. .+-|-.-.++++++..-+++ +.|+++-| +|....
T Consensus 51 ~GlIi~~~~~v~~~~~~~-~~~~~~~~d~~i~~~r~l~d~vh~~-G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~ 128 (337)
T PRK13523 51 VGLVIVEATAVLPEGRIS-DKDLGIWDDEHIEGLHKLVTFIHDH-GAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKT 128 (337)
T ss_pred CeEEEECCeEECccccCC-CCceecCCHHHHHHHHHHHHHHHhc-CCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCC
Confidence 445666777777654321 111 12222235777887644443 67888777 332110
Q ss_pred ---cccCh--HHHHHHHHHHHHHHHhcCCCceEEEecC---------CCCCCCCCchhhhhhhhHHHHH-HHHHHHHHHh
Q psy4449 99 ---ITSDR--ESRLNFISSVLEMFDMYKFDGLDLNVKD---------PALNDEDDDDLESIANERSDFS-TFIQELSSTL 163 (2417)
Q Consensus 99 ---~~~~~--~~R~~fi~siv~~l~~~~fDGidl~W~~---------p~~~~~~~~~~~~~~~~r~~f~-~ll~eL~~~l 163 (2417)
|..+. .-.+.|++.+ ..+++-|||||+|+--+ |..+.+. +.-+++.+.|-.|. ..|+++|++.
T Consensus 129 p~~mt~eeI~~ii~~f~~aA-~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~Rt-D~yGGslenR~Rf~~eii~~ir~~~ 206 (337)
T PRK13523 129 PVEMTKEQIKETVLAFKQAA-VRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRT-DEYGGSPENRYRFLREIIDAVKEVW 206 (337)
T ss_pred CCcCCHHHHHHHHHHHHHHH-HHHHHcCCCEEEEccccchHHHHhcCCccCCcC-CCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 11111 3455777655 45667899999998663 6555543 33345666675555 5666777765
Q ss_pred hcCCcEEEEEecCcccccccccCH-------hhhccc-cceEEEEec
Q psy4449 164 RRNNYQLTLTSPGVIDRKTSLVDI-------SVVAPL-VDLILLKSF 202 (2417)
Q Consensus 164 ~~~~~~Lsv~v~p~~~~~~~~yD~-------~~l~~~-vD~v~l~~y 202 (2417)
.+.|.+-+.+.. .....+++ +.|.+. +|+|+|..-
T Consensus 207 ---~~~v~vRis~~d-~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g 249 (337)
T PRK13523 207 ---DGPLFVRISASD-YHPGGLTVQDYVQYAKWMKEQGVDLIDVSSG 249 (337)
T ss_pred ---CCCeEEEecccc-cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 456777666532 12223333 333333 799998764
No 107
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=62.43 E-value=35 Score=43.76 Aligned_cols=152 Identities=13% Similarity=0.190 Sum_probs=83.6
Q ss_pred EEEeeeeecCCCccccccCc--cchhhhchhhhhhhccccCCCceEEEEe--cccccc----------------------
Q psy4449 45 VIYAYAAIDPVSRALIPEDL--EYDVIKGGYKSFLGLKEANPELKVYLAV--KSNFVS---------------------- 98 (2417)
Q Consensus 45 viY~~a~ld~~~~~~~~~~~--~~D~~~~~y~~~~~LK~~~P~lkvlLsV--Gg~f~~---------------------- 98 (2417)
||-..+.+++.+... +... +-|-...++++++..-+++ +.|+++-| +|..+.
T Consensus 50 Ii~e~~~v~~~~~~~-~~~~~l~~d~~i~~~~~l~~~vh~~-g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~ 127 (343)
T cd04734 50 IITEGSSVHPSDSPA-FGNLNASDDEIIPGFRRLAEAVHAH-GAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAV 127 (343)
T ss_pred EEEeeeeeCCcccCC-CCccccCCHHHHHHHHHHHHHHHhc-CCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCC
Confidence 566666777653322 2121 2222235778887644444 57777777 331110
Q ss_pred ---cccC--hHHHHHHHHHHHHHHHhcCCCceEEEec---------CCCCCCCCCchhhhhhhhH-HHHHHHHHHHHHHh
Q psy4449 99 ---ITSD--RESRLNFISSVLEMFDMYKFDGLDLNVK---------DPALNDEDDDDLESIANER-SDFSTFIQELSSTL 163 (2417)
Q Consensus 99 ---~~~~--~~~R~~fi~siv~~l~~~~fDGidl~W~---------~p~~~~~~~~~~~~~~~~r-~~f~~ll~eL~~~l 163 (2417)
|..+ ..-.+.|++.+. .+++-|||||+|+-- .|..+.+.+.+ +++.+.| .....+|+.+|++.
T Consensus 128 ~~~mt~~eI~~ii~~f~~AA~-ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~y-GGslenR~r~~~eiv~~ir~~v 205 (343)
T cd04734 128 PKAMEEEDIEEIIAAFADAAR-RCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEY-GGSLENRMRFLLEVLAAVRAAV 205 (343)
T ss_pred CCcCCHHHHHHHHHHHHHHHH-HHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcC-CCCHHHHhHHHHHHHHHHHHHc
Confidence 1111 244567777665 556789999999873 35445443333 3445555 55566777777776
Q ss_pred hcCCcEEEEEecCcccccccccC------H-hhhccc--cceEEEEec
Q psy4449 164 RRNNYQLTLTSPGVIDRKTSLVD------I-SVVAPL--VDLILLKSF 202 (2417)
Q Consensus 164 ~~~~~~Lsv~v~p~~~~~~~~yD------~-~~l~~~--vD~v~l~~y 202 (2417)
. ..+.|.+-+.+.. .....++ + +.|.+. +|+|.|..-
T Consensus 206 g-~~~~v~iRl~~~~-~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g 251 (343)
T cd04734 206 G-PDFIVGIRISGDE-DTEGGLSPDEALEIAARLAAEGLIDYVNVSAG 251 (343)
T ss_pred C-CCCeEEEEeehhh-ccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 4 3466777776643 1222222 2 445544 799998654
No 108
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=62.42 E-value=1.1e+02 Score=39.74 Aligned_cols=132 Identities=14% Similarity=0.199 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhCCCEEEEEE--cCCCCCC----------Cc----------chhHhhcC---HHHHHHHHHHHHHHHHH
Q psy4449 1768 NKFYEKVTALKKKGVKVTLAI--GGWNDSA----------GN----------KYSRLVNS---QQARSKFIAHVVNFILE 1822 (2417)
Q Consensus 1768 ~~~~~~i~~lk~~glKvllsI--GGw~~s~----------~~----------~fs~~~~~---~~~R~~Fi~siv~~l~~ 1822 (2417)
..+.+.+..+|++|.|+++-| +|-.... +. ...+.+.. .+..+.|++.+ ..+++
T Consensus 83 ~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA-~ra~~ 161 (370)
T cd02929 83 RNLAAMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVDAA-LRARD 161 (370)
T ss_pred HHHHHHHHHHHHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHHHH-HHHHH
Confidence 345566678899999998776 3321100 00 00011111 14556788755 45666
Q ss_pred cCCCeEEEeecC---------CCC-ccCCCCCCCcchhhhHH-HHHHHHHHhcCCCCcEEEEEECCChhhhcc-cCC---
Q psy4449 1823 HNFDGLDLDWEY---------PKC-WQVDCKQGPASDKQGFA-DLIKELRAAFNPHDLLLSAAVSPSKAVIDN-AYD--- 1887 (2417)
Q Consensus 1823 ygfDGiDiDwEy---------P~~-~~~~~~~~~~~d~~~~~-~llkeLr~~l~~~~~~Ls~av~~~~~~~~~-~yd--- 1887 (2417)
-|||||+|.--+ |.. ...+.-++..+++..|. ..|+++|++... ++.|.+-+++....... +.+
T Consensus 162 aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~-~~~v~vRls~~~~~~~~g~~~~~e 240 (370)
T cd02929 162 AGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGD-DCAVATRFSVDELIGPGGIESEGE 240 (370)
T ss_pred cCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCC-CceEEEEecHHHhcCCCCCCCHHH
Confidence 799999998776 542 22233455556665554 688999999853 56666666553321111 111
Q ss_pred ----ccccccCcceEEEE
Q psy4449 1888 ----IPVMSENLDWISVM 1901 (2417)
Q Consensus 1888 ----~~~l~~~vD~i~vM 1901 (2417)
++.|.+.+|+|+|-
T Consensus 241 ~~~~~~~l~~~~D~i~vs 258 (370)
T cd02929 241 GVEFVEMLDELPDLWDVN 258 (370)
T ss_pred HHHHHHHHHhhCCEEEec
Confidence 13345568888874
No 109
>PLN02960 alpha-amylase
Probab=62.32 E-value=37 Score=47.76 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=46.5
Q ss_pred hHHHHHHHHhHhcCCEEEEEec----------c---CCCcCCCchh------------hh--hcCHHHHHHHHHHHHHHH
Q psy4449 1401 ILFYERVVTLKKKGVKVSLAIG----------G---WNDSLGGKYS------------RL--VNSATARQRFIEHVVKFL 1453 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~g~Kv~~sig----------g---w~~~~~~~~~------------~~--~~~~~~r~~fi~~iv~~l 1453 (2417)
++|.+.|.++|++||+|+|-+= | +.++..-.|. .+ ..++..|+-+++++.-.|
T Consensus 466 ~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl 545 (897)
T PLN02960 466 DDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWV 545 (897)
T ss_pred HHHHHHHHHHHHCCCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHH
Confidence 6788999999999999999541 1 1110000111 11 347889999999999999
Q ss_pred HHcCCCccccc
Q psy4449 1454 LKYQFDGLDLD 1464 (2417)
Q Consensus 1454 ~~ygfDGvDlD 1464 (2417)
++|++||+-||
T Consensus 546 ~EyhIDGfR~D 556 (897)
T PLN02960 546 TEYRVDGFQFH 556 (897)
T ss_pred HHHCCCceeec
Confidence 99999999998
No 110
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=61.92 E-value=23 Score=51.52 Aligned_cols=66 Identities=20% Similarity=0.381 Sum_probs=46.6
Q ss_pred hHHHHHHHHhHhcCCEEEEEe-cc-------CCCcCCCchh---------------hh-hcCHHHHHHHHHHHHHHHHHc
Q psy4449 1401 ILFYERVVTLKKKGVKVSLAI-GG-------WNDSLGGKYS---------------RL-VNSATARQRFIEHVVKFLLKY 1456 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~g~Kv~~si-gg-------w~~~~~~~~~---------------~~-~~~~~~r~~fi~~iv~~l~~y 1456 (2417)
.+|.+-|.++|++||+|||=| -+ +.+-....|. .+ ..++..|+-+++++.-.+++|
T Consensus 555 ~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey 634 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEF 634 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 678999999999999999932 11 0100001111 11 135778999999999999999
Q ss_pred CCCccccccC
Q psy4449 1457 QFDGLDLDWE 1466 (2417)
Q Consensus 1457 gfDGvDlD~E 1466 (2417)
++||+-||.=
T Consensus 635 ~VDGFRfDl~ 644 (1111)
T TIGR02102 635 KVDGFRFDMM 644 (1111)
T ss_pred CCcEEEEecc
Confidence 9999999964
No 111
>PLN02960 alpha-amylase
Probab=61.90 E-value=53 Score=46.38 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHhCCCEEEEEEc----------CC-CCCCCc--chh------------H--hhcCHHHHHHHHHHHHHH
Q psy4449 1767 DNKFYEKVTALKKKGVKVTLAIG----------GW-NDSAGN--KYS------------R--LVNSQQARSKFIAHVVNF 1819 (2417)
Q Consensus 1767 ~~~~~~~i~~lk~~glKvllsIG----------Gw-~~s~~~--~fs------------~--~~~~~~~R~~Fi~siv~~ 1819 (2417)
..+|.+.|.++|++|++|||=+= |. ...+.. .|. . -..++..|+-+++++.-+
T Consensus 465 p~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yW 544 (897)
T PLN02960 465 PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWW 544 (897)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHH
Confidence 35788999999999999998761 10 000000 111 1 135788999999999999
Q ss_pred HHHcCCCeEEEe
Q psy4449 1820 ILEHNFDGLDLD 1831 (2417)
Q Consensus 1820 l~~ygfDGiDiD 1831 (2417)
|++|++||+-||
T Consensus 545 l~EyhIDGfR~D 556 (897)
T PLN02960 545 VTEYRVDGFQFH 556 (897)
T ss_pred HHHHCCCceeec
Confidence 999999999998
No 112
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=61.10 E-value=28 Score=48.68 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=46.1
Q ss_pred hhHHHHHHHHhHhcCCEEEEEe-cc-------------CCCcCC-Cch----------------hh--hhcCHHHHHHHH
Q psy4449 1400 HILFYERVVTLKKKGVKVSLAI-GG-------------WNDSLG-GKY----------------SR--LVNSATARQRFI 1446 (2417)
Q Consensus 1400 ~~~~~~~v~~~k~~g~Kv~~si-gg-------------w~~~~~-~~~----------------~~--~~~~~~~r~~fi 1446 (2417)
.++|.+-|.++|++||+||+=+ -+ |.+-.. ..| .. -..++..|+-++
T Consensus 244 ~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~ 323 (688)
T TIGR02100 244 VAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVM 323 (688)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHH
Confidence 3678999999999999999922 11 000000 000 00 113678888888
Q ss_pred HHHHHHHHHcCCCccccccC
Q psy4449 1447 EHVVKFLLKYQFDGLDLDWE 1466 (2417)
Q Consensus 1447 ~~iv~~l~~ygfDGvDlD~E 1466 (2417)
+++.-++++||+||+-||.=
T Consensus 324 d~l~~W~~e~gIDGfR~D~a 343 (688)
T TIGR02100 324 DSLRYWVTEMHVDGFRFDLA 343 (688)
T ss_pred HHHHHHHHHcCCcEEEEech
Confidence 99889999999999999964
No 113
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=61.08 E-value=7.7 Score=52.21 Aligned_cols=25 Identities=8% Similarity=0.062 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEE
Q psy4449 149 RSDFSTFIQELSSTLRRNNYQLTLT 173 (2417)
Q Consensus 149 r~~f~~ll~eL~~~l~~~~~~Lsv~ 173 (2417)
++..-+-+.|+.+.+.++|+.+-+-
T Consensus 172 ~q~veq~m~e~~a~~~~~G~~~~~~ 196 (872)
T COG3889 172 NQYVEQAMAELNAEYMAKGLWYKVG 196 (872)
T ss_pred HHHHHHHHHHHHHHHhhcCcEEEec
Confidence 3455555666666666666555543
No 114
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=59.74 E-value=18 Score=48.89 Aligned_cols=111 Identities=21% Similarity=0.213 Sum_probs=65.5
Q ss_pred hhhhhh------HHHHHHHHhHhcCCEEEE--EeccC----------------CCcCC-C----ch-----h--hh--hc
Q psy4449 1396 LTYVHI------LFYERVVTLKKKGVKVSL--AIGGW----------------NDSLG-G----KY-----S--RL--VN 1437 (2417)
Q Consensus 1396 ~~~~~~------~~~~~v~~~k~~g~Kv~~--siggw----------------~~~~~-~----~~-----~--~~--~~ 1437 (2417)
|.|..+ ...+.|..+|+.|+|+|. +|-|- .+... . .+ + .+ ..
T Consensus 159 w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~ 238 (559)
T PF13199_consen 159 WTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANNNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPG 238 (559)
T ss_dssp T-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEETT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT
T ss_pred hhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccccCcccccCCchhhhhhccCCCccceeecCcccccceEEecCC
Confidence 766653 357789999999999998 33321 11110 0 01 0 11 25
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCccccccCCccccccc--cCCCCC-ChhhHHHHHHHHHHHhcCCCceeEEEeec
Q psy4449 1438 SATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVN--CDAGPD-SDKESFGLFVRELHQAFKPHGLLLSAAVS 1509 (2417)
Q Consensus 1438 ~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~~--~~~~~~-~d~~~~~~fv~eL~~~l~~~~~~ls~av~ 1509 (2417)
|+..|+-+++++.+.++..||||+.||== +.++.- .++... .=+..|..||+++++++ +...++.-+|.
T Consensus 239 N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~--G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~-~~k~lv~N~V~ 310 (559)
T PF13199_consen 239 NPEWQNYIINQMNKAIQNFGFDGWHLDQL--GNRGTVYDYDGNKIYDLSDGYASFINAMKEAL-PDKYLVFNAVS 310 (559)
T ss_dssp -HHHHHHHHHHHHHHHHHHT--EEEEE-S----EEEEGGTT---GGECHHHHHHHHHHHHHHS-TTSEEEEB-GG
T ss_pred CHHHHHHHHHHHHHHHHccCCceEeeecc--CCCCccccCCCCCchhhHHHHHHHHHHHHHhC-CCCceeeeccC
Confidence 78899999999999999999999999922 111111 122222 33688999999999999 44455555664
No 115
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=59.55 E-value=20 Score=43.14 Aligned_cols=109 Identities=8% Similarity=0.124 Sum_probs=58.3
Q ss_pred cccCCCceEEEEecccccccccChHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCCCCchhhhhhhhHHHHHHHHHHH
Q psy4449 80 KEANPELKVYLAVKSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQEL 159 (2417)
Q Consensus 80 K~~~P~lkvlLsVGg~f~~~~~~~~~R~~fi~siv~~l~~~~fDGidl~W~~p~~~~~~~~~~~~~~~~r~~f~~ll~eL 159 (2417)
.....+.+++++|++.- + ..|++. ...+++.|||||+|+--.|..+..+.........+.+....+|+++
T Consensus 49 ~~~~~~~p~~~qi~g~~------~---~~~~~a-a~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v 118 (231)
T cd02801 49 TRNPEERPLIVQLGGSD------P---ETLAEA-AKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAV 118 (231)
T ss_pred ccCccCCCEEEEEcCCC------H---HHHHHH-HHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHH
Confidence 33445688999997642 1 235443 4456678999999998777544333222222233444466777777
Q ss_pred HHHhhcCCcEEEEEecCcccccccccCH-hhhcc-ccceEEEEe
Q psy4449 160 SSTLRRNNYQLTLTSPGVIDRKTSLVDI-SVVAP-LVDLILLKS 201 (2417)
Q Consensus 160 ~~~l~~~~~~Lsv~v~p~~~~~~~~yD~-~~l~~-~vD~v~l~~ 201 (2417)
+++.. ..+++-+.......+...++ +.|.+ -+|+|++..
T Consensus 119 ~~~~~---~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~ 159 (231)
T cd02801 119 REAVP---IPVTVKIRLGWDDEEETLELAKALEDAGASALTVHG 159 (231)
T ss_pred HHhcC---CCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECC
Confidence 76654 33444333221111111111 33333 268998865
No 116
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=59.28 E-value=40 Score=46.75 Aligned_cols=66 Identities=18% Similarity=0.372 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhCCCEEEEEE-----cCCC-----CCCCcch------------h----H-hhcCHHHHHHHHHHHHHHH
Q psy4449 1768 NKFYEKVTALKKKGVKVTLAI-----GGWN-----DSAGNKY------------S----R-LVNSQQARSKFIAHVVNFI 1820 (2417)
Q Consensus 1768 ~~~~~~i~~lk~~glKvllsI-----GGw~-----~s~~~~f------------s----~-~~~~~~~R~~Fi~siv~~l 1820 (2417)
.+|.+.|.++|++|++|||=+ ++.. ......| + . -..++..|+-+++++.-++
T Consensus 229 ~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~ 308 (605)
T TIGR02104 229 RELKQMIQALHENGIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWV 308 (605)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHH
Confidence 568899999999999999765 1100 0000001 0 0 1236788999999999999
Q ss_pred HHcCCCeEEEeec
Q psy4449 1821 LEHNFDGLDLDWE 1833 (2417)
Q Consensus 1821 ~~ygfDGiDiDwE 1833 (2417)
++|++||+-||--
T Consensus 309 ~e~~iDGfR~D~~ 321 (605)
T TIGR02104 309 KEYNIDGFRFDLM 321 (605)
T ss_pred HHcCCCEEEEech
Confidence 9999999999965
No 117
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=57.56 E-value=64 Score=41.30 Aligned_cols=130 Identities=18% Similarity=0.251 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhCCCEEEEEE--cCCCCCC-------Cc-------chhHhhcC---HHHHHHHHHHHHHHHHHcCCCeE
Q psy4449 1768 NKFYEKVTALKKKGVKVTLAI--GGWNDSA-------GN-------KYSRLVNS---QQARSKFIAHVVNFILEHNFDGL 1828 (2417)
Q Consensus 1768 ~~~~~~i~~lk~~glKvllsI--GGw~~s~-------~~-------~fs~~~~~---~~~R~~Fi~siv~~l~~ygfDGi 1828 (2417)
..+.+...++|++|-|+++-| +|..... +. ...+.++. .+..+.|++.+ ..+++-|||||
T Consensus 81 ~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA-~~a~~aGfDgV 159 (337)
T PRK13523 81 EGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAA-VRAKEAGFDVI 159 (337)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHH-HHHHHcCCCEE
Confidence 345566678888999998777 3322100 00 00011111 14556777755 56677899999
Q ss_pred EEeecC---------CCC-ccCCCCCCCcchhhhHH-HHHHHHHHhcCCCCcEEEEEECCChhhhcccCCc-------cc
Q psy4449 1829 DLDWEY---------PKC-WQVDCKQGPASDKQGFA-DLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDI-------PV 1890 (2417)
Q Consensus 1829 DiDwEy---------P~~-~~~~~~~~~~~d~~~~~-~llkeLr~~l~~~~~~Ls~av~~~~~~~~~~yd~-------~~ 1890 (2417)
+|.--+ |.. ...+.-++..+++..|+ ..|+++|++. ++.|.+-+.+... ...++++ +.
T Consensus 160 eih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~---~~~v~vRis~~d~-~~~G~~~~e~~~i~~~ 235 (337)
T PRK13523 160 EIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW---DGPLFVRISASDY-HPGGLTVQDYVQYAKW 235 (337)
T ss_pred EEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc---CCCeEEEeccccc-CCCCCCHHHHHHHHHH
Confidence 998763 542 22333355566666665 5788888887 3455555554321 1223332 22
Q ss_pred cccC-cceEEEEe
Q psy4449 1891 MSEN-LDWISVMT 1902 (2417)
Q Consensus 1891 l~~~-vD~i~vMt 1902 (2417)
|.+. +|+|+|-.
T Consensus 236 l~~~gvD~i~vs~ 248 (337)
T PRK13523 236 MKEQGVDLIDVSS 248 (337)
T ss_pred HHHcCCCEEEeCC
Confidence 3222 79999854
No 118
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=56.73 E-value=49 Score=46.40 Aligned_cols=66 Identities=18% Similarity=0.299 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEEc-------CCCCC--------CC----------cch---h----H-hhcCHHHHHHHHH
Q psy4449 1768 NKFYEKVTALKKKGVKVTLAIG-------GWNDS--------AG----------NKY---S----R-LVNSQQARSKFIA 1814 (2417)
Q Consensus 1768 ~~~~~~i~~lk~~glKvllsIG-------Gw~~s--------~~----------~~f---s----~-~~~~~~~R~~Fi~ 1814 (2417)
.+|.+.|.++|++|++|||=+= +.... .. ..| + . -..++..|+-+++
T Consensus 245 ~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d 324 (688)
T TIGR02100 245 AEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMD 324 (688)
T ss_pred HHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHH
Confidence 4688899999999999997651 10000 00 000 0 0 1236788888899
Q ss_pred HHHHHHHHcCCCeEEEeec
Q psy4449 1815 HVVNFILEHNFDGLDLDWE 1833 (2417)
Q Consensus 1815 siv~~l~~ygfDGiDiDwE 1833 (2417)
++.-++++||+||+-||--
T Consensus 325 ~l~~W~~e~gIDGfR~D~a 343 (688)
T TIGR02100 325 SLRYWVTEMHVDGFRFDLA 343 (688)
T ss_pred HHHHHHHHcCCcEEEEech
Confidence 9999999999999999975
No 119
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=56.61 E-value=38 Score=43.37 Aligned_cols=92 Identities=14% Similarity=0.302 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEeecC---------CCCc-cCCCCCCCcchhhhHH-HHHHHHHHhcCCCCcEEEEEEC
Q psy4449 1808 ARSKFIAHVVNFILEHNFDGLDLDWEY---------PKCW-QVDCKQGPASDKQGFA-DLIKELRAAFNPHDLLLSAAVS 1876 (2417)
Q Consensus 1808 ~R~~Fi~siv~~l~~ygfDGiDiDwEy---------P~~~-~~~~~~~~~~d~~~~~-~llkeLr~~l~~~~~~Ls~av~ 1876 (2417)
..+.|++.+ ..+++.|||||+|.--+ |... ..+..++.-+++..|+ ..|+++|+++. .++.|.+-+.
T Consensus 147 ~i~~~~~aA-~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG-~d~~v~vris 224 (338)
T cd04733 147 VIDRFAHAA-RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVG-PGFPVGIKLN 224 (338)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcC-CCCeEEEEEc
Confidence 456677655 46788899999998664 5421 2233345556666555 68899999985 3577777776
Q ss_pred CChhhhcccCC-------ccccccC-cceEEEEe
Q psy4449 1877 PSKAVIDNAYD-------IPVMSEN-LDWISVMT 1902 (2417)
Q Consensus 1877 ~~~~~~~~~yd-------~~~l~~~-vD~i~vMt 1902 (2417)
+.. ....+++ ++.|.+. +|+|.|..
T Consensus 225 ~~~-~~~~g~~~eea~~ia~~Le~~Gvd~iev~~ 257 (338)
T cd04733 225 SAD-FQRGGFTEEDALEVVEALEEAGVDLVELSG 257 (338)
T ss_pred HHH-cCCCCCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 421 1122333 2233333 79998864
No 120
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=56.49 E-value=21 Score=43.97 Aligned_cols=86 Identities=16% Similarity=0.223 Sum_probs=53.3
Q ss_pred hHHHHHHHHhHhcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccCCccccccccCCCCC
Q psy4449 1401 ILFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPD 1480 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~~~~~~~~ 1480 (2417)
..+.+.+..+|+||++|+|-+.--.+. .... -++. .+.+...+++.|..||-+||= .
T Consensus 73 ~dl~elv~Ya~~KgVgi~lw~~~~~~~---~~~~------~~~~-~~~~f~~~~~~Gv~GvKidF~-------------~ 129 (273)
T PF10566_consen 73 FDLPELVDYAKEKGVGIWLWYHSETGG---NVAN------LEKQ-LDEAFKLYAKWGVKGVKIDFM-------------D 129 (273)
T ss_dssp --HHHHHHHHHHTT-EEEEEEECCHTT---BHHH------HHCC-HHHHHHHHHHCTEEEEEEE---------------S
T ss_pred cCHHHHHHHHHHcCCCEEEEEeCCcch---hhHh------HHHH-HHHHHHHHHHcCCCEEeeCcC-------------C
Confidence 456788999999999999966521110 0011 2233 488999999999999999987 2
Q ss_pred ChhhHHHHHHHHHHHhcCCCceeEEEeec
Q psy4449 1481 SDKESFGLFVRELHQAFKPHGLLLSAAVS 1509 (2417)
Q Consensus 1481 ~d~~~~~~fv~eL~~~l~~~~~~ls~av~ 1509 (2417)
.|.+.-+++.+++-++--+.+|+|-+--+
T Consensus 130 ~d~Q~~v~~y~~i~~~AA~~~LmvnfHg~ 158 (273)
T PF10566_consen 130 RDDQEMVNWYEDILEDAAEYKLMVNFHGA 158 (273)
T ss_dssp STSHHHHHHHHHHHHHHHHTT-EEEETTS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcEEEecCC
Confidence 35555666666665555466666666444
No 121
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=56.27 E-value=32 Score=44.08 Aligned_cols=93 Identities=10% Similarity=0.158 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecC---------CCCCCCCCchhhhhhhhHHHHH-HHHHHHHHHhhcCCcEEEEEec
Q psy4449 106 RLNFISSVLEMFDMYKFDGLDLNVKD---------PALNDEDDDDLESIANERSDFS-TFIQELSSTLRRNNYQLTLTSP 175 (2417)
Q Consensus 106 R~~fi~siv~~l~~~~fDGidl~W~~---------p~~~~~~~~~~~~~~~~r~~f~-~ll~eL~~~l~~~~~~Lsv~v~ 175 (2417)
.+.|++.+ ..+++-|||||+|+--+ |..+.+.+ .-+++.+.|..|. ..|+.+|++.... .|++-+.
T Consensus 151 i~~f~~aA-~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D-~yGGslenR~rf~~eii~air~~vg~d--~v~vRis 226 (338)
T cd02933 151 VADFRQAA-RNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTD-EYGGSIENRARFLLEVVDAVAEAIGAD--RVGIRLS 226 (338)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEccccchhHHHhcCCccCCCCC-cCCCcHHHhhhHHHHHHHHHHHHhCCC--ceEEEEC
Confidence 44666654 55666799999998776 65555433 3345556665443 5666677766544 3777776
Q ss_pred Ccccc--------cccccCH-hhhccc-cceEEEEec
Q psy4449 176 GVIDR--------KTSLVDI-SVVAPL-VDLILLKSF 202 (2417)
Q Consensus 176 p~~~~--------~~~~yD~-~~l~~~-vD~v~l~~y 202 (2417)
+.... .++...+ +.|.+. +|+|+|...
T Consensus 227 ~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g 263 (338)
T cd02933 227 PFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEP 263 (338)
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecC
Confidence 54211 1111112 344333 799998553
No 122
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=55.92 E-value=59 Score=45.63 Aligned_cols=65 Identities=17% Similarity=0.378 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHhCCCEEEEEEc----------C---CCCCCCcchh------------Hh--hcCHHHHHHHHHHHHHH
Q psy4449 1767 DNKFYEKVTALKKKGVKVTLAIG----------G---WNDSAGNKYS------------RL--VNSQQARSKFIAHVVNF 1819 (2417)
Q Consensus 1767 ~~~~~~~i~~lk~~glKvllsIG----------G---w~~s~~~~fs------------~~--~~~~~~R~~Fi~siv~~ 1819 (2417)
..+|.+.|.++|++|++|||=|- | +.......|. .. ..+++.|+-+++++.-+
T Consensus 299 p~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~W 378 (758)
T PLN02447 299 PEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWW 378 (758)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHH
Confidence 35688899999999999997651 1 1000001111 01 23578888899999999
Q ss_pred HHHcCCCeEEEe
Q psy4449 1820 ILEHNFDGLDLD 1831 (2417)
Q Consensus 1820 l~~ygfDGiDiD 1831 (2417)
|++|++||+-||
T Consensus 379 l~ey~IDGfRfD 390 (758)
T PLN02447 379 LEEYKFDGFRFD 390 (758)
T ss_pred HHHhCccccccc
Confidence 999999999998
No 123
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=55.73 E-value=55 Score=42.23 Aligned_cols=152 Identities=11% Similarity=0.163 Sum_probs=79.6
Q ss_pred EEEEeeeeecCCCccccccC--ccchhhhchhhhhhhccccCCCceEEEEe--ccccc--------------------c-
Q psy4449 44 HVIYAYAAIDPVSRALIPED--LEYDVIKGGYKSFLGLKEANPELKVYLAV--KSNFV--------------------S- 98 (2417)
Q Consensus 44 HviY~~a~ld~~~~~~~~~~--~~~D~~~~~y~~~~~LK~~~P~lkvlLsV--Gg~f~--------------------~- 98 (2417)
-||-+.+.+++.+.. .+.. .+-|-...++++++..-+++ +.|+++-| +|... +
T Consensus 49 lii~~~~~v~~~~~~-~~~~~~~~~~~~i~~~~~l~~~vh~~-g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~ 126 (353)
T cd02930 49 LIVTGGFAPNEAGKL-GPGGPVLNSPRQAAGHRLITDAVHAE-GGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRE 126 (353)
T ss_pred EEEEeeEEeCCcccC-CCCCcccCCHHHHHHHHHHHHHHHHc-CCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCC
Confidence 456666667664321 1111 12222235677777643333 57777776 22110 0
Q ss_pred cccC--hHHHHHHHHHHHHHHHhcCCCceEEEecC---------CCCCCCCCchhhhhhhhHHHH-HHHHHHHHHHhhcC
Q psy4449 99 ITSD--RESRLNFISSVLEMFDMYKFDGLDLNVKD---------PALNDEDDDDLESIANERSDF-STFIQELSSTLRRN 166 (2417)
Q Consensus 99 ~~~~--~~~R~~fi~siv~~l~~~~fDGidl~W~~---------p~~~~~~~~~~~~~~~~r~~f-~~ll~eL~~~l~~~ 166 (2417)
|..+ ..-.+.|++.+. .+++-|||||+|+--+ |..+.+.+ .-+++.+.|..| ...|+++|+++..
T Consensus 127 mt~~eI~~i~~~f~~aA~-~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD-~yGGslenR~r~~~eiv~aIR~~vG~- 203 (353)
T cd02930 127 LSEEEIEQTIEDFARCAA-LAREAGYDGVEIMGSEGYLINQFLAPRTNKRTD-EWGGSFENRMRFPVEIVRAVRAAVGE- 203 (353)
T ss_pred CCHHHHHHHHHHHHHHHH-HHHHcCCCEEEEecccchHHHHhcCCccCCCcC-ccCCCHHHHhHHHHHHHHHHHHHcCC-
Confidence 1111 234556776665 4666899999998742 44444333 333455555444 4567777777754
Q ss_pred CcEEEEEecCcccccccccCH-------hhhccc-cceEEEEe
Q psy4449 167 NYQLTLTSPGVIDRKTSLVDI-------SVVAPL-VDLILLKS 201 (2417)
Q Consensus 167 ~~~Lsv~v~p~~~~~~~~yD~-------~~l~~~-vD~v~l~~ 201 (2417)
.+.|.+-+.+.. .....+++ +.|.+. +|+|.+..
T Consensus 204 d~~v~iRi~~~D-~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~ 245 (353)
T cd02930 204 DFIIIYRLSMLD-LVEGGSTWEEVVALAKALEAAGADILNTGI 245 (353)
T ss_pred CceEEEEecccc-cCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 456666665432 12222332 344443 79999854
No 124
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=55.67 E-value=76 Score=40.77 Aligned_cols=132 Identities=14% Similarity=0.251 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEEc--CCCCCCC-cc-----hhH------------hhcC--HHHHHHHHHHHHHHHHHcCC
Q psy4449 1768 NKFYEKVTALKKKGVKVTLAIG--GWNDSAG-NK-----YSR------------LVNS--QQARSKFIAHVVNFILEHNF 1825 (2417)
Q Consensus 1768 ~~~~~~i~~lk~~glKvllsIG--Gw~~s~~-~~-----fs~------------~~~~--~~~R~~Fi~siv~~l~~ygf 1825 (2417)
..+.+.+..+|+.|-|+++-|. |...... .. -|. |-.+ .+..+.|++.+. .+++-||
T Consensus 77 ~~~~~l~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~-ra~~aGf 155 (343)
T cd04734 77 PGFRRLAEAVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAAR-RCQAGGL 155 (343)
T ss_pred HHHHHHHHHHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHH-HHHHcCC
Confidence 3455667788889999887763 3221100 00 011 1101 355667887665 5566899
Q ss_pred CeEEEee--cC-------CCCc-cCCCCCCCcchh-hhHHHHHHHHHHhcCCCCcEEEEEECCChhhhcccCC-------
Q psy4449 1826 DGLDLDW--EY-------PKCW-QVDCKQGPASDK-QGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYD------- 1887 (2417)
Q Consensus 1826 DGiDiDw--Ey-------P~~~-~~~~~~~~~~d~-~~~~~llkeLr~~l~~~~~~Ls~av~~~~~~~~~~yd------- 1887 (2417)
|||+|.- -| |... ..+..++..+++ .....+|+++|++.. ..+.+.+-+.+... ...+.+
T Consensus 156 DgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg-~~~~v~iRl~~~~~-~~~G~~~~e~~~~ 233 (343)
T cd04734 156 DGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVG-PDFIVGIRISGDED-TEGGLSPDEALEI 233 (343)
T ss_pred CEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcC-CCCeEEEEeehhhc-cCCCCCHHHHHHH
Confidence 9999998 33 3211 112234555555 445578899999885 34666666655332 112222
Q ss_pred cccccc--CcceEEEEe
Q psy4449 1888 IPVMSE--NLDWISVMT 1902 (2417)
Q Consensus 1888 ~~~l~~--~vD~i~vMt 1902 (2417)
++.|.+ .+|+|.|-.
T Consensus 234 ~~~l~~~G~vd~i~vs~ 250 (343)
T cd04734 234 AARLAAEGLIDYVNVSA 250 (343)
T ss_pred HHHHHhcCCCCEEEeCC
Confidence 233444 389999853
No 125
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=53.11 E-value=21 Score=48.33 Aligned_cols=88 Identities=22% Similarity=0.322 Sum_probs=51.4
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCCeEEEeec-CCCCccCCCCCCCc-chhhhHHHHHHHHHHhcCCCCcEEEEEECCChhh
Q psy4449 1804 NSQQARSKFIAHVVNFILEHNFDGLDLDWE-YPKCWQVDCKQGPA-SDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAV 1881 (2417)
Q Consensus 1804 ~~~~~R~~Fi~siv~~l~~ygfDGiDiDwE-yP~~~~~~~~~~~~-~d~~~~~~llkeLr~~l~~~~~~Ls~av~~~~~~ 1881 (2417)
+++.-|+-+++.+.+.++..||||+.||=- .++.. .+.++... .-+..|..||+++++++..+ .++.=+|.
T Consensus 238 ~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~-~d~~G~~i~~l~~~y~~Fi~~~K~~~~~k-~lv~N~V~----- 310 (559)
T PF13199_consen 238 GNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTV-YDYDGNKIYDLSDGYASFINAMKEALPDK-YLVFNAVS----- 310 (559)
T ss_dssp T-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEE-GGTT---GGECHHHHHHHHHHHHHHSTTS-EEEEB-GG-----
T ss_pred CCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCcc-ccCCCCCchhhHHHHHHHHHHHHHhCCCC-ceeeeccC-----
Confidence 578889999999999999999999999932 11111 11222233 44788999999999999443 23332332
Q ss_pred hcccCCcccccc--CcceEEEE
Q psy4449 1882 IDNAYDIPVMSE--NLDWISVM 1901 (2417)
Q Consensus 1882 ~~~~yd~~~l~~--~vD~i~vM 1901 (2417)
+|....|+. -+||+-.-
T Consensus 311 ---~~g~~~~a~~~~~d~lY~E 329 (559)
T PF13199_consen 311 ---GYGIEQIAKTSKVDFLYNE 329 (559)
T ss_dssp ---GTTHHHHTT-S--SSEEEE
T ss_pred ---ccchhhhhcccccceeeee
Confidence 334444443 57776544
No 126
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=53.10 E-value=90 Score=43.41 Aligned_cols=66 Identities=18% Similarity=0.182 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHhCCCEEEEEEc----C---CC---CCCC-------------cchhH---hhcCHHHHHHHHHHHHHHH
Q psy4449 1767 DNKFYEKVTALKKKGVKVTLAIG----G---WN---DSAG-------------NKYSR---LVNSQQARSKFIAHVVNFI 1820 (2417)
Q Consensus 1767 ~~~~~~~i~~lk~~glKvllsIG----G---w~---~s~~-------------~~fs~---~~~~~~~R~~Fi~siv~~l 1820 (2417)
..+|.+.|.++|++|++|||=+- | +. .... ..+.. -..++..|+-+++++.-+|
T Consensus 205 ~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~ 284 (613)
T TIGR01515 205 PDDFMYFVDACHQAGIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWA 284 (613)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHH
Confidence 35788999999999999997652 0 00 0000 00100 1256899999999999999
Q ss_pred HHcCCCeEEEee
Q psy4449 1821 LEHNFDGLDLDW 1832 (2417)
Q Consensus 1821 ~~ygfDGiDiDw 1832 (2417)
++|++||+-||-
T Consensus 285 ~ey~iDG~R~D~ 296 (613)
T TIGR01515 285 EFYHIDGLRVDA 296 (613)
T ss_pred HHhCCcEEEEcC
Confidence 999999999995
No 127
>PRK10785 maltodextrin glucosidase; Provisional
Probab=52.45 E-value=26 Score=48.52 Aligned_cols=56 Identities=23% Similarity=0.288 Sum_probs=36.0
Q ss_pred cCHHHHHHHHH---HHHH-HHHH-cCCCccccccCCccccccccCCCCCChhhHHHHHHHHHHHhcCCC
Q psy4449 1437 NSATARQRFIE---HVVK-FLLK-YQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPH 1500 (2417)
Q Consensus 1437 ~~~~~r~~fi~---~iv~-~l~~-ygfDGvDlD~E~p~~~~~~~~~~~~~d~~~~~~fv~eL~~~l~~~ 1500 (2417)
.|++.|+.+++ +++. .|++ +|+||+-||-=. .+ ...........|++++|++++..
T Consensus 303 ~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~----~v----~~~~~~~~~~~f~~~~~~~vk~~ 363 (598)
T PRK10785 303 QSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVH----ML----GEGGGARNNLQHVAGITQAAKEE 363 (598)
T ss_pred CCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHh----Hh----ccccCccccHHHHHHHHHHHHhh
Confidence 47888898886 4555 5665 899999999531 00 00111223458899999888653
No 128
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=51.27 E-value=28 Score=43.43 Aligned_cols=84 Identities=11% Similarity=0.070 Sum_probs=58.9
Q ss_pred HHHHHHhCCCEEEEEEc-CCCCC--CCcchhHhh-cCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcc
Q psy4449 1773 KVTALKKKGVKVTLAIG-GWNDS--AGNKYSRLV-NSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPAS 1848 (2417)
Q Consensus 1773 ~i~~lk~~glKvllsIG-Gw~~s--~~~~fs~~~-~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~ 1848 (2417)
.|.++|++|+.||=.|- -|... ..+-+..|+ .++.-.=-|++.+++..+-|||||--|+=|- .++.++
T Consensus 132 VIDaaHrNGVPvlGt~Ffppk~ygg~~ewv~~mLk~dedGsfP~A~klv~vAkyYGfdGwFINqET--------~G~~~~ 203 (553)
T COG4724 132 VIDAAHRNGVPVLGTLFFPPKNYGGDQEWVAEMLKQDEDGSFPIARKLVDVAKYYGFDGWFINQET--------TGDVKP 203 (553)
T ss_pred hhhhhhcCCCceeeeeecChhhcCchHHHHHHHHhcCcCCCChhHHHHHHHHHhcCcceeEecccc--------cCCCcc
Confidence 36788999999985541 11111 123456665 3455555689999999999999999999883 245677
Q ss_pred hhhhHHHHHHHHHHhc
Q psy4449 1849 DKQGFADLIKELRAAF 1864 (2417)
Q Consensus 1849 d~~~~~~llkeLr~~l 1864 (2417)
+.+++.+||..+++.-
T Consensus 204 ~a~~M~~f~ly~ke~~ 219 (553)
T COG4724 204 LAEKMRQFMLYSKEYA 219 (553)
T ss_pred hHHHHHHHHHHHHhcc
Confidence 8888888888887544
No 129
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=51.08 E-value=68 Score=41.86 Aligned_cols=70 Identities=16% Similarity=0.270 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEEecC----------CCCCCCCCchhhhhhhhHHHHH-HHHHHHHHHhhcCCcEEEE
Q psy4449 104 ESRLNFISSVLEMFDMYKFDGLDLNVKD----------PALNDEDDDDLESIANERSDFS-TFIQELSSTLRRNNYQLTL 172 (2417)
Q Consensus 104 ~~R~~fi~siv~~l~~~~fDGidl~W~~----------p~~~~~~~~~~~~~~~~r~~f~-~ll~eL~~~l~~~~~~Lsv 172 (2417)
.-.+.|++.+ ...++-|||||+|+--+ |..+.+ .+.-+++.+.|..|. ..|+++|++.. .++.|++
T Consensus 147 ~ii~~f~~AA-~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~R-tDeyGGslenR~rf~~eii~~vr~~~g-~~f~v~v 223 (382)
T cd02931 147 TFVGKFGESA-VIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKR-TDKYGGSLENRLRFAIEIVEEIKARCG-EDFPVSL 223 (382)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEeccccChHHHHhcCCccCCC-CCcCCCCHHHHhHHHHHHHHHHHHhcC-CCceEEE
Confidence 3455677755 45566899999999743 333333 233345666665543 55666666654 3467777
Q ss_pred EecC
Q psy4449 173 TSPG 176 (2417)
Q Consensus 173 ~v~p 176 (2417)
-+.+
T Consensus 224 ri~~ 227 (382)
T cd02931 224 RYSV 227 (382)
T ss_pred EEec
Confidence 6665
No 130
>PRK03705 glycogen debranching enzyme; Provisional
Probab=51.00 E-value=29 Score=48.22 Aligned_cols=66 Identities=21% Similarity=0.307 Sum_probs=46.8
Q ss_pred hHHHHHHHHhHhcCCEEEEEe-ccCC---CcCC----------C---------chh------hhh--cCHHHHHHHHHHH
Q psy4449 1401 ILFYERVVTLKKKGVKVSLAI-GGWN---DSLG----------G---------KYS------RLV--NSATARQRFIEHV 1449 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~g~Kv~~si-ggw~---~~~~----------~---------~~~------~~~--~~~~~r~~fi~~i 1449 (2417)
.+|.+-|.++|++|||||+=+ -+=. +..+ . .+. ..+ .++..|+-+++++
T Consensus 242 ~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l 321 (658)
T PRK03705 242 DEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCL 321 (658)
T ss_pred HHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHH
Confidence 579999999999999999922 1100 0000 0 000 011 3788899999999
Q ss_pred HHHHHHcCCCccccccC
Q psy4449 1450 VKFLLKYQFDGLDLDWE 1466 (2417)
Q Consensus 1450 v~~l~~ygfDGvDlD~E 1466 (2417)
.-.+++||+||+-||.-
T Consensus 322 ~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 322 RYWVETCHVDGFRFDLA 338 (658)
T ss_pred HHHHHHhCCCEEEEEcH
Confidence 99999999999999964
No 131
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=50.34 E-value=1.7e+02 Score=33.62 Aligned_cols=118 Identities=17% Similarity=0.050 Sum_probs=61.6
Q ss_pred CceEEEEeeeeecCCCcceeecc----chhhhh-hHHHHHHHHhHhcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHH
Q psy4449 1372 LYVTLQTGLGTDQEKENTFLKIS----ELTYVH-ILFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFI 1446 (2417)
Q Consensus 1372 ~~thi~~~~~~l~~~~~~~~~~~----~~~~~~-~~~~~~v~~~k~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi 1446 (2417)
.+.+||..+....+ ....++. .+.... .-....+.++.+.|+||+++++-+. ..+.. .+.+.+..+.
T Consensus 33 GidtlIlq~~~~~~--~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~----~~w~~--~~~~~~~~~~ 104 (166)
T PF14488_consen 33 GIDTLILQWTGYGG--FAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDP----DYWDQ--GDLDWEAERN 104 (166)
T ss_pred CCcEEEEEEeecCC--cccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCc----hhhhc--cCHHHHHHHH
Confidence 35678888777732 1111211 122222 2344567788899999999998532 22221 3444443333
Q ss_pred HHHHHHHH-HcC----CCccccccCCccccccccCCCCCChhhHHHHHHHHHHHhcCCCceeEEEe
Q psy4449 1447 EHVVKFLL-KYQ----FDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAA 1507 (2417)
Q Consensus 1447 ~~iv~~l~-~yg----fDGvDlD~E~p~~~~~~~~~~~~~d~~~~~~fv~eL~~~l~~~~~~ls~a 1507 (2417)
+.|++.|- +|| |.|.=|-.|.- .......+.|..|.+.|++.-. ++-+.|+
T Consensus 105 ~~v~~el~~~yg~h~sf~GWYip~E~~--------~~~~~~~~~~~~l~~~lk~~s~--~~Pv~IS 160 (166)
T PF14488_consen 105 KQVADELWQRYGHHPSFYGWYIPYEID--------DYNWNAPERFALLGKYLKQISP--GKPVMIS 160 (166)
T ss_pred HHHHHHHHHHHcCCCCCceEEEecccC--------CcccchHHHHHHHHHHHHHhCC--CCCeEEe
Confidence 33443333 355 99999999931 2234444455555544444332 4444443
No 132
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=50.32 E-value=64 Score=41.31 Aligned_cols=94 Identities=17% Similarity=0.179 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEecC---------CCCCCCCCchhhhhhhhHHHH-HHHHHHHHHHhhcCCcEEEEEe
Q psy4449 105 SRLNFISSVLEMFDMYKFDGLDLNVKD---------PALNDEDDDDLESIANERSDF-STFIQELSSTLRRNNYQLTLTS 174 (2417)
Q Consensus 105 ~R~~fi~siv~~l~~~~fDGidl~W~~---------p~~~~~~~~~~~~~~~~r~~f-~~ll~eL~~~l~~~~~~Lsv~v 174 (2417)
-...|++.+... ++-|||||+|+--+ |..+.+.+.. +++-+.|..| ...|+.+|+++.. ++.|.+-+
T Consensus 152 ii~~~~~aA~~a-~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~y-Ggsl~nr~rf~~eiv~aIR~~vG~-d~~v~vri 228 (336)
T cd02932 152 VVDAFVAAARRA-VEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEY-GGSLENRMRFLLEVVDAVRAVWPE-DKPLFVRI 228 (336)
T ss_pred HHHHHHHHHHHH-HHcCCCEEEEccccccHHHHhcCCccCCCCccc-CCCHHHHhHHHHHHHHHHHHHcCC-CceEEEEE
Confidence 445677665544 55799999998532 5444443333 3444555444 4566677777643 46677766
Q ss_pred cCcccccccccCH-------hhhccc-cceEEEEec
Q psy4449 175 PGVIDRKTSLVDI-------SVVAPL-VDLILLKSF 202 (2417)
Q Consensus 175 ~p~~~~~~~~yD~-------~~l~~~-vD~v~l~~y 202 (2417)
.+.. .....+++ +.|.+. +|+|.+..-
T Consensus 229 ~~~~-~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g 263 (336)
T cd02932 229 SATD-WVEGGWDLEDSVELAKALKELGVDLIDVSSG 263 (336)
T ss_pred cccc-cCCCCCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 6532 11222333 233332 788887643
No 133
>PLN02877 alpha-amylase/limit dextrinase
Probab=49.90 E-value=65 Score=46.25 Aligned_cols=66 Identities=24% Similarity=0.375 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEE-------cCCCC--CC-----CcchhHh----------------hcCHHHHHHHHHHHH
Q psy4449 1768 NKFYEKVTALKKKGVKVTLAI-------GGWND--SA-----GNKYSRL----------------VNSQQARSKFIAHVV 1817 (2417)
Q Consensus 1768 ~~~~~~i~~lk~~glKvllsI-------GGw~~--s~-----~~~fs~~----------------~~~~~~R~~Fi~siv 1817 (2417)
.+|.+.|++||++|++|||=| +|... +. ...|.+. ...+..|+-+++++.
T Consensus 466 ~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~ 545 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLL 545 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHH
Confidence 467888999999999999775 12110 00 0111110 123677888999999
Q ss_pred HHHHHcCCCeEEEeec
Q psy4449 1818 NFILEHNFDGLDLDWE 1833 (2417)
Q Consensus 1818 ~~l~~ygfDGiDiDwE 1833 (2417)
-|+++|++||+-||--
T Consensus 546 yW~~ey~VDGFRFDlm 561 (970)
T PLN02877 546 NWAVNYKVDGFRFDLM 561 (970)
T ss_pred HHHHHhCCCEEEEEcc
Confidence 9999999999999987
No 134
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=49.76 E-value=70 Score=43.15 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCccccccC
Q psy4449 1438 SATARQRFIEHVVKFLLKYQFDGLDLDWE 1466 (2417)
Q Consensus 1438 ~~~~r~~fi~~iv~~l~~ygfDGvDlD~E 1466 (2417)
+++.|+.+++-+.-+++++|+||+-||-=
T Consensus 207 np~V~~~l~~~~~~w~~~~giDGfRlDav 235 (479)
T PRK09441 207 HPEVREELKYWAKWYMETTGFDGFRLDAV 235 (479)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEhhh
Confidence 67778888876665556699999999954
No 135
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=49.75 E-value=82 Score=39.80 Aligned_cols=103 Identities=17% Similarity=0.198 Sum_probs=62.2
Q ss_pred cchhccCCHHHHHHHHHHHHHHHHHhCCCccccccccCc--ch------h---c---------------cccccCCCcEE
Q psy4449 2277 KYSRLVNDIPARRNFVRHVTEFLEFYGFNGLEFAWEYPK--CW------Q---T---------------CSTVKSHEWTV 2330 (2417)
Q Consensus 2277 ~~~~~~~~~~~r~~f~~~~~~~~~~~~fdgld~~we~p~--~~------~---~---------------c~~~~~~~~~~ 2330 (2417)
.+-.+. +|++|+ |..+.++-+.++|+||+-+|+-=|. .. . . +..+....-.+
T Consensus 125 ~~~Dft-np~a~~-w~~~~~~~~~~~Gid~~~~D~~e~~p~~~~~~~g~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~ 202 (308)
T cd06593 125 GIIDFT-NPDACK-WYKDKLKPLLDMGVDCFKTDFGERIPTDVVYYDGSDGEKMHNYYALLYNKAVYEATKEVKGEGEAV 202 (308)
T ss_pred ccccCC-CHHHHH-HHHHHHHHHHHhCCcEEecCCCCCCCccccccCCCCcceeeeHHHHHHHHHHHHHHHHhcCCCCeE
Confidence 344444 888884 5577888888899999988876431 11 0 0 22222221122
Q ss_pred EEcCCCCcc--cee--ecCCeeeEecchHHHHHHHHHhhhcCCCceeeeecccccccc
Q psy4449 2331 VRDSLGARG--PYA--YNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQN 2384 (2417)
Q Consensus 2331 ~~~~~~~~~--~~~--~~~~~w~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~dd~~~ 2384 (2417)
+.-..|-.| -|+ ..||+-.++| .++.-..-+..++|.|...|.-|+--|.|
T Consensus 203 ~~~Rs~~~Gsqry~~~w~GD~~s~w~---~L~~~i~~~l~~~l~G~~~~g~DigGf~~ 257 (308)
T cd06593 203 VWARSAWAGSQKYPVHWGGDCESTFE---GMAESLRGGLSLGLSGFGFWSHDIGGFEG 257 (308)
T ss_pred EEEcCCccccccCCCEECCCcccCHH---HHHHHHHHHHhccccCCceecCccCCcCC
Confidence 222222111 222 3466656664 47777777889999999999999976665
No 136
>PRK03705 glycogen debranching enzyme; Provisional
Probab=49.63 E-value=42 Score=46.71 Aligned_cols=66 Identities=23% Similarity=0.321 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEEcC----CCCCCC----------c---------ch---h----H-hhcCHHHHHHHHHHH
Q psy4449 1768 NKFYEKVTALKKKGVKVTLAIGG----WNDSAG----------N---------KY---S----R-LVNSQQARSKFIAHV 1816 (2417)
Q Consensus 1768 ~~~~~~i~~lk~~glKvllsIGG----w~~s~~----------~---------~f---s----~-~~~~~~~R~~Fi~si 1816 (2417)
.+|.+.|.++|++|+||||=|== ..+..+ . .| + . -..++..|+-+++++
T Consensus 242 ~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l 321 (658)
T PRK03705 242 DEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCL 321 (658)
T ss_pred HHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHH
Confidence 46888999999999999976510 000000 0 00 0 1 124788899999999
Q ss_pred HHHHHHcCCCeEEEeec
Q psy4449 1817 VNFILEHNFDGLDLDWE 1833 (2417)
Q Consensus 1817 v~~l~~ygfDGiDiDwE 1833 (2417)
.-++++||+||+-||--
T Consensus 322 ~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 322 RYWVETCHVDGFRFDLA 338 (658)
T ss_pred HHHHHHhCCCEEEEEcH
Confidence 99999999999999975
No 137
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=49.49 E-value=65 Score=41.85 Aligned_cols=115 Identities=11% Similarity=0.081 Sum_probs=64.5
Q ss_pred hhhhhhhccccCCCceEEEEecccccccccChHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCCCCchhhhhhhhHHH
Q psy4449 72 GYKSFLGLKEANPELKVYLAVKSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSD 151 (2417)
Q Consensus 72 ~y~~~~~LK~~~P~lkvlLsVGg~f~~~~~~~~~R~~fi~siv~~l~~~~fDGidl~W~~p~~~~~~~~~~~~~~~~r~~ 151 (2417)
..+.+..+|++.|.+.|++||.+.++ ...|++ +++.+++.|.|+|+||+-.|.....+.. .....++.+.
T Consensus 100 ~l~~i~~~k~~~~~~pvIaSi~~~~s--------~~~~~~-~a~~~e~~GaD~iELNiSCPn~~~~r~~-g~~~gq~~e~ 169 (385)
T PLN02495 100 MLAEFKQLKEEYPDRILIASIMEEYN--------KDAWEE-IIERVEETGVDALEINFSCPHGMPERKM-GAAVGQDCDL 169 (385)
T ss_pred HHHHHHHHHhhCCCCcEEEEccCCCC--------HHHHHH-HHHHHHhcCCCEEEEECCCCCCCCcCcc-chhhccCHHH
Confidence 44556667888889999999954333 122333 3446678899999999998865432110 0011233444
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEecCcccccccccCHhhhccccceEEEE
Q psy4449 152 FSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLK 200 (2417)
Q Consensus 152 f~~ll~eL~~~l~~~~~~Lsv~v~p~~~~~~~~yD~~~l~~~vD~v~l~ 200 (2417)
...+++.+++.. ...|.+-++|+...+..... ..+..-+|-|.+.
T Consensus 170 ~~~i~~~Vk~~~---~iPv~vKLsPn~t~i~~ia~-aa~~~Gadgi~li 214 (385)
T PLN02495 170 LEEVCGWINAKA---TVPVWAKMTPNITDITQPAR-VALKSGCEGVAAI 214 (385)
T ss_pred HHHHHHHHHHhh---cCceEEEeCCChhhHHHHHH-HHHHhCCCEEEEe
Confidence 555555555543 35577778886533221111 1222336777664
No 138
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=49.42 E-value=27 Score=43.47 Aligned_cols=85 Identities=14% Similarity=0.095 Sum_probs=61.4
Q ss_pred HHHHHhHhcCCEEEEEecc-CCCcCC--Cchhhhhc-CHHHHHHHHHHHHHHHHHcCCCccccccCCccccccccCCCCC
Q psy4449 1405 ERVVTLKKKGVKVSLAIGG-WNDSLG--GKYSRLVN-SATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPD 1480 (2417)
Q Consensus 1405 ~~v~~~k~~g~Kv~~sigg-w~~~~~--~~~~~~~~-~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~~~~~~~~ 1480 (2417)
+.|.++|.+|+.|+-.|.= |....+ +.+..||. ++.-.=-|+..+++..+-|||||-=|.=|= .++.+
T Consensus 131 DVIDaaHrNGVPvlGt~Ffppk~ygg~~ewv~~mLk~dedGsfP~A~klv~vAkyYGfdGwFINqET--------~G~~~ 202 (553)
T COG4724 131 DVIDAAHRNGVPVLGTLFFPPKNYGGDQEWVAEMLKQDEDGSFPIARKLVDVAKYYGFDGWFINQET--------TGDVK 202 (553)
T ss_pred hhhhhhhcCCCceeeeeecChhhcCchHHHHHHHHhcCcCCCChhHHHHHHHHHhcCcceeEecccc--------cCCCc
Confidence 3677889999999876652 322222 45666665 444455689999999999999999999882 24567
Q ss_pred ChhhHHHHHHHHHHHhc
Q psy4449 1481 SDKESFGLFVRELHQAF 1497 (2417)
Q Consensus 1481 ~d~~~~~~fv~eL~~~l 1497 (2417)
.+.++..+||..+++.-
T Consensus 203 ~~a~~M~~f~ly~ke~~ 219 (553)
T COG4724 203 PLAEKMRQFMLYSKEYA 219 (553)
T ss_pred chHHHHHHHHHHHHhcc
Confidence 77888888888776544
No 139
>PLN02877 alpha-amylase/limit dextrinase
Probab=49.36 E-value=41 Score=48.19 Aligned_cols=66 Identities=26% Similarity=0.524 Sum_probs=46.2
Q ss_pred hHHHHHHHHhHhcCCEEEEEe-c------c-CCC-c-----CCCchhhh-----------h-----cCHHHHHHHHHHHH
Q psy4449 1401 ILFYERVVTLKKKGVKVSLAI-G------G-WND-S-----LGGKYSRL-----------V-----NSATARQRFIEHVV 1450 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~g~Kv~~si-g------g-w~~-~-----~~~~~~~~-----------~-----~~~~~r~~fi~~iv 1450 (2417)
.+|.+-|.++|++||+|+|=+ - | |.. + ....|.+. . .++-.|+-+++++.
T Consensus 466 ~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~ 545 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLL 545 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHH
Confidence 578889999999999999932 1 1 110 1 01122211 0 12557888999999
Q ss_pred HHHHHcCCCccccccC
Q psy4449 1451 KFLLKYQFDGLDLDWE 1466 (2417)
Q Consensus 1451 ~~l~~ygfDGvDlD~E 1466 (2417)
-.+++|++||+-||.=
T Consensus 546 yW~~ey~VDGFRFDlm 561 (970)
T PLN02877 546 NWAVNYKVDGFRFDLM 561 (970)
T ss_pred HHHHHhCCCEEEEEcc
Confidence 9999999999999976
No 140
>PRK14705 glycogen branching enzyme; Provisional
Probab=48.94 E-value=1e+02 Score=45.72 Aligned_cols=65 Identities=22% Similarity=0.354 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhCCCEEEEEEc-------CCC---CCCCcc-------------hhH---hhcCHHHHHHHHHHHHHHHH
Q psy4449 1768 NKFYEKVTALKKKGVKVTLAIG-------GWN---DSAGNK-------------YSR---LVNSQQARSKFIAHVVNFIL 1821 (2417)
Q Consensus 1768 ~~~~~~i~~lk~~glKvllsIG-------Gw~---~s~~~~-------------fs~---~~~~~~~R~~Fi~siv~~l~ 1821 (2417)
.+|...|.++|++|++|||=+= +|. ..+... |.. -..+++.|+-+++++.-+|+
T Consensus 815 ~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~ 894 (1224)
T PRK14705 815 DEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLD 894 (1224)
T ss_pred HHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHH
Confidence 4578889999999999997641 110 000000 100 13568899999999999999
Q ss_pred HcCCCeEEEee
Q psy4449 1822 EHNFDGLDLDW 1832 (2417)
Q Consensus 1822 ~ygfDGiDiDw 1832 (2417)
+|++||+-||-
T Consensus 895 eyhiDGfR~Da 905 (1224)
T PRK14705 895 EFHIDGLRVDA 905 (1224)
T ss_pred HhCCCcEEEee
Confidence 99999999995
No 141
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=48.68 E-value=99 Score=39.97 Aligned_cols=139 Identities=16% Similarity=0.171 Sum_probs=72.0
Q ss_pred hhhh-hhHHHHHHHHhHhcCCEEEEEeccCCC----cCC-----------------CchhhhhcCH---HHHHHHHHHHH
Q psy4449 1396 LTYV-HILFYERVVTLKKKGVKVSLAIGGWND----SLG-----------------GKYSRLVNSA---TARQRFIEHVV 1450 (2417)
Q Consensus 1396 ~~~~-~~~~~~~v~~~k~~g~Kv~~siggw~~----~~~-----------------~~~~~~~~~~---~~r~~fi~~iv 1450 (2417)
|.+- -..|.+.....|+.|-|+++-|.--.. +.. ....+.+..+ +-++.|++.+.
T Consensus 77 ~~d~~i~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~ 156 (363)
T COG1902 77 WSDAQIPGLKRLTEAVHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAAR 156 (363)
T ss_pred CChhHhHHHHHHHHHHHhcCCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 5554 466777788999999999996653210 000 0112222222 34566776666
Q ss_pred HHHHHcCCCccccccC---------Ccccccc-ccCCCCCChhhHHHHHHH----HHHHhcCCCceeEEEeecCChhhhc
Q psy4449 1451 KFLLKYQFDGLDLDWE---------YPTCWQV-NCDAGPDSDKESFGLFVR----ELHQAFKPHGLLLSAAVSPSKQVIN 1516 (2417)
Q Consensus 1451 ~~l~~ygfDGvDlD~E---------~p~~~~~-~~~~~~~~d~~~~~~fv~----eL~~~l~~~~~~ls~av~p~~~~~~ 1516 (2417)
.-.+ -|||||.|-== -|...+. |-=+++ -||=..|+. .+|++.. ..+.|.+-++|......
T Consensus 157 rA~~-AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGS---lENR~Rf~~EVv~aVr~~vg-~~~~vg~Rls~~d~~~~ 231 (363)
T COG1902 157 RAKE-AGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGS---LENRARFLLEVVDAVREAVG-ADFPVGVRLSPDDFFDG 231 (363)
T ss_pred HHHH-cCCCEEEEeeccchHHHHhcCCccCCCCCccCCc---HHHHHHHHHHHHHHHHHHhC-CCceEEEEECccccCCC
Confidence 5555 79999998521 1110000 000122 355455544 4566664 34567777777544222
Q ss_pred cccchh-------hhccc--CceEEeeecccC
Q psy4449 1517 AAYDVK-------ALSES--LDWISVMTYDYH 1539 (2417)
Q Consensus 1517 ~~~d~~-------~l~~~--vD~i~vMtYD~~ 1539 (2417)
.++++. .|.+. +|+|.+..=+.+
T Consensus 232 ~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~ 263 (363)
T COG1902 232 GGLTIEEAVELAKALEEAGLVDYIHVSEGGYE 263 (363)
T ss_pred CCCCHHHHHHHHHHHHhcCCccEEEeeccccc
Confidence 244433 34433 588877665543
No 142
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=48.64 E-value=63 Score=40.70 Aligned_cols=112 Identities=11% Similarity=0.103 Sum_probs=65.1
Q ss_pred hhhhhccccCCCceEEEEecccccccccChHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCCCCchhhhhhhhHHHHH
Q psy4449 74 KSFLGLKEANPELKVYLAVKSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFS 153 (2417)
Q Consensus 74 ~~~~~LK~~~P~lkvlLsVGg~f~~~~~~~~~R~~fi~siv~~l~~~~fDGidl~W~~p~~~~~~~~~~~~~~~~r~~f~ 153 (2417)
+++..+++..++..++++|-|.+. + ..|++ +++.+++.++|+|+||.-.|....++ +.......+.+.+.
T Consensus 88 ~~~~~~~~~~~~~p~i~si~G~~~-----~---~~~~~-~a~~~~~~gad~ielN~sCP~~~~~~-~~G~~l~~~~~~~~ 157 (299)
T cd02940 88 KEIRELKKDFPDKILIASIMCEYN-----K---EDWTE-LAKLVEEAGADALELNFSCPHGMPER-GMGAAVGQDPELVE 157 (299)
T ss_pred HHHHHHHhhCCCCeEEEEecCCCC-----H---HHHHH-HHHHHHhcCCCEEEEECCCCCCCCCC-CCchhhccCHHHHH
Confidence 344455555556778888865422 1 34554 44566778999999999998753211 11112235567788
Q ss_pred HHHHHHHHHhhcCCcEEEEEecCcccccccccCHhhh-ccccceEEEE
Q psy4449 154 TFIQELSSTLRRNNYQLTLTSPGVIDRKTSLVDISVV-APLVDLILLK 200 (2417)
Q Consensus 154 ~ll~eL~~~l~~~~~~Lsv~v~p~~~~~~~~yD~~~l-~~~vD~v~l~ 200 (2417)
++++.+++..+ ..|++=++|......... ..+ ..=+|.|.+.
T Consensus 158 ~iv~~v~~~~~---~Pv~vKl~~~~~~~~~~a--~~~~~~Gadgi~~~ 200 (299)
T cd02940 158 EICRWVREAVK---IPVIAKLTPNITDIREIA--RAAKEGGADGVSAI 200 (299)
T ss_pred HHHHHHHHhcC---CCeEEECCCCchhHHHHH--HHHHHcCCCEEEEe
Confidence 88888887653 457777777542221111 222 2237888763
No 143
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=48.39 E-value=83 Score=43.70 Aligned_cols=166 Identities=16% Similarity=0.249 Sum_probs=93.0
Q ss_pred CCccEEEE-EeEEecCCCcE---EccCCCcchhhHHHHHHH-HHHHhC-CCEEE--EEEcCCCCCC--------------
Q psy4449 1738 DLCTHVIY-GFAVLDTDQLV---IKPHDTWADLDNKFYEKV-TALKKK-GVKVT--LAIGGWNDSA-------------- 1795 (2417)
Q Consensus 1738 ~~cTHIiy-aFa~i~~~~~~---~~~~d~~~d~~~~~~~~i-~~lk~~-glKvl--lsIGGw~~s~-------------- 1795 (2417)
-..+||.+ ||+..+.+|.. .++. .+..+..+++.++ =.|+.+ |+||. +-+-+|....
T Consensus 346 ~~~~~VyLqafadp~gdg~~~~lYFpn-r~lPmraDlfnrvawql~tR~~v~vyAWmpvl~~~l~~~~~~~~~~~~~~~~ 424 (672)
T PRK14581 346 LRVTHVFLQAFSDPKGDGNIRQVYFPN-RWIPMRQDLFNRVVWQLASRPDVEVYAWMPVLAFDMDPSLPRITRIDPKTGK 424 (672)
T ss_pred cCCCEEEEEeeeCCCCCCceeeEEecC-CcccHHHhhhhHHHHHHHhhhCceEEEeeehhhccCCcccchhhhcccccCc
Confidence 35677766 88888877643 3444 3566777888888 467766 89987 3333332210
Q ss_pred ----CcchhHhhcCHHHHHHHHHHHHHHHHHc-CCCeEEEeecCC-----C----------CccCC-----CCCCCcc--
Q psy4449 1796 ----GNKYSRLVNSQQARSKFIAHVVNFILEH-NFDGLDLDWEYP-----K----------CWQVD-----CKQGPAS-- 1848 (2417)
Q Consensus 1796 ----~~~fs~~~~~~~~R~~Fi~siv~~l~~y-gfDGiDiDwEyP-----~----------~~~~~-----~~~~~~~-- 1848 (2417)
...+.++--=....++.|++|-+=|-+| .||||-|.=+-- . .|+.. ++. .++
T Consensus 425 ~~~~~~~y~rlspf~~~~~~~i~~iy~DLa~~~~~~GilfhDd~~l~d~ed~sp~a~~~y~~~gl~~~~~~~~~-~~~~~ 503 (672)
T PRK14581 425 TSIDPDQYRRLSPFNPEVRQRIIDIYRDMAYSAPIDGIIYHDDAVMSDFEDASPDAIRAYEKAGFPGSITTIRQ-DPEMM 503 (672)
T ss_pred cccCCCCccccCCCCHHHHHHHHHHHHHHHhcCCCCeEEeccccccccccccCHHHHHHHHhcCCCccHHhHhc-CHHHH
Confidence 0012222222233346788899888888 799998843200 0 01110 000 011
Q ss_pred ------hhhhHHHHHHHHHHhcCCC---------CcEEEEEECCChhhhcccCCccccccCcceEEEEeccCC
Q psy4449 1849 ------DKQGFADLIKELRAAFNPH---------DLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYH 1906 (2417)
Q Consensus 1849 ------d~~~~~~llkeLr~~l~~~---------~~~Ls~av~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~ 1906 (2417)
-.+.+..|-.||+++.++. ++.-...+.|....+ -+.++..+.+..||+.||+|-+-
T Consensus 504 ~~w~~~k~~~l~~f~~~l~~~v~~~~~p~~~tarniya~~~l~p~~~~w-~aQ~l~~~~~~yD~~a~mamp~m 575 (672)
T PRK14581 504 QRWTRYKSKYLIDFTNELTREVRDIRGPQVKSARNIFAMPILEPESEAW-FAQNLDDFLANYDWVAPMAMPLM 575 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccceehhcccccccCChhHHHH-HHhHHHHHHhhcchhHHhhchhh
Confidence 1134567888888887642 122222222322221 23577888889999999998754
No 144
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=46.96 E-value=1.3e+02 Score=37.81 Aligned_cols=87 Identities=20% Similarity=0.346 Sum_probs=55.5
Q ss_pred HHHHHHHHHHh-CCCEEEEEEcCCCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCC-C
Q psy4449 1769 KFYEKVTALKK-KGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQG-P 1846 (2417)
Q Consensus 1769 ~~~~~i~~lk~-~glKvllsIGGw~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~-~ 1846 (2417)
.+.+.+..+++ .+.+++++|+|.. .+.|++ ++..+++.|+|+|+|++-.|...+ ++. -
T Consensus 76 ~~~~~~~~~~~~~~~p~ivsi~g~~----------------~~~~~~-~a~~~~~~G~d~iElN~~cP~~~~---~g~~~ 135 (296)
T cd04740 76 AFLEELLPWLREFGTPVIASIAGST----------------VEEFVE-VAEKLADAGADAIELNISCPNVKG---GGMAF 135 (296)
T ss_pred HHHHHHHHHhhcCCCcEEEEEecCC----------------HHHHHH-HHHHHHHcCCCEEEEECCCCCCCC---Ccccc
Confidence 34555655554 4789999998732 233444 445677889999999998776321 111 1
Q ss_pred cchhhhHHHHHHHHHHhcCCCCcEEEEEECCC
Q psy4449 1847 ASDKQGFADLIKELRAAFNPHDLLLSAAVSPS 1878 (2417)
Q Consensus 1847 ~~d~~~~~~llkeLr~~l~~~~~~Ls~av~~~ 1878 (2417)
-.+.+.+..+|+++|++. ++-|++-+.+.
T Consensus 136 ~~~~~~~~eiv~~vr~~~---~~Pv~vKl~~~ 164 (296)
T cd04740 136 GTDPEAVAEIVKAVKKAT---DVPVIVKLTPN 164 (296)
T ss_pred cCCHHHHHHHHHHHHhcc---CCCEEEEeCCC
Confidence 245566778888888876 45566666553
No 145
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=46.62 E-value=64 Score=40.96 Aligned_cols=101 Identities=19% Similarity=0.246 Sum_probs=63.2
Q ss_pred chhccCCHHHHHHHHHHHHHHHHHhCCCccccccccCcchhc---ccc----------------------------cc--
Q psy4449 2278 YSRLVNDIPARRNFVRHVTEFLEFYGFNGLEFAWEYPKCWQT---CST----------------------------VK-- 2324 (2417)
Q Consensus 2278 ~~~~~~~~~~r~~f~~~~~~~~~~~~fdgld~~we~p~~~~~---c~~----------------------------~~-- 2324 (2417)
+-.+. +|++|+=|.+.+-+++.+.|+||+=+|.-=|..+.. |.. .+
T Consensus 134 ~~Dft-np~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~g~~~~~~~~~n~y~~l~~~a~~~~~~~~~~~ 212 (317)
T cd06599 134 FVDFT-NPEGREWWKEGVKEALLDLGIDSTWNDNNEYEIWDDDAVCDGFGKPGTIGELRPVQPNLMARASHEAQAEHYPN 212 (317)
T ss_pred eecCC-ChHHHHHHHHHHHHHHhcCCCcEEEecCCCCccCCCcceecCCCCccchhhcccchHHHHHHHHHHHHHHhCCC
Confidence 44444 899999888888799999999999999865532211 211 10
Q ss_pred CCCcEEEEcCCCCcc----ceeecCCeeeEecchHHHHHHHHHhhhcCCCceeeeecccccccc
Q psy4449 2325 SHEWTVVRDSLGARG----PYAYNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQN 2384 (2417)
Q Consensus 2325 ~~~~~~~~~~~~~~~----~~~~~~~~w~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~dd~~~ 2384 (2417)
.....+++ -|-.| +--.-||+-.+++. ++.-..-+...+|-|...|..|+--|.+
T Consensus 213 ~r~f~ltR--s~~~G~qry~~~WsGD~~s~W~~---L~~~i~~~L~~glsG~~~~g~DIGGF~~ 271 (317)
T cd06599 213 RRPYIVSR--SGFAGIQRYAQTWSGDNRTSWKT---LRYNIAMGLGMGLSGVANIGHDIGGFAG 271 (317)
T ss_pred CCcEEEEc--CCcccccCCcCeeCCCcccCHHH---HHHHHHHHHhhhccCCcccccccCccCC
Confidence 00111111 11111 11223566566654 6666677889999999999999977765
No 146
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=46.14 E-value=92 Score=39.07 Aligned_cols=88 Identities=20% Similarity=0.294 Sum_probs=55.0
Q ss_pred hHHHHHHHHhHh-cCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccCCccccccccCCCC
Q psy4449 1401 ILFYERVVTLKK-KGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGP 1479 (2417)
Q Consensus 1401 ~~~~~~v~~~k~-~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~~~~~~~ 1479 (2417)
+.+.+++..+++ .+.+++++|+|.+ .+.|++ ++..+++.|+|+|+|.+-.|...+.+ ...
T Consensus 75 ~~~~~~~~~~~~~~~~p~ivsi~g~~----------------~~~~~~-~a~~~~~~G~d~iElN~~cP~~~~~g--~~~ 135 (296)
T cd04740 75 EAFLEELLPWLREFGTPVIASIAGST----------------VEEFVE-VAEKLADAGADAIELNISCPNVKGGG--MAF 135 (296)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEecCC----------------HHHHHH-HHHHHHHcCCCEEEEECCCCCCCCCc--ccc
Confidence 445556665544 4789999998732 344554 44556778999999998866521110 111
Q ss_pred CChhhHHHHHHHHHHHhcCCCceeEEEeecC
Q psy4449 1480 DSDKESFGLFVRELHQAFKPHGLLLSAAVSP 1510 (2417)
Q Consensus 1480 ~~d~~~~~~fv~eL~~~l~~~~~~ls~av~p 1510 (2417)
-.+.+...++|+++|++. ++.|++-+.|
T Consensus 136 ~~~~~~~~eiv~~vr~~~---~~Pv~vKl~~ 163 (296)
T cd04740 136 GTDPEAVAEIVKAVKKAT---DVPVIVKLTP 163 (296)
T ss_pred cCCHHHHHHHHHHHHhcc---CCCEEEEeCC
Confidence 245677778888888876 3445554544
No 147
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=45.64 E-value=32 Score=44.08 Aligned_cols=114 Identities=19% Similarity=0.219 Sum_probs=58.1
Q ss_pred chhhhhhHHHHHHHHhHhcCCEEEEEecc----C---CCc-CCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccC
Q psy4449 1395 ELTYVHILFYERVVTLKKKGVKVSLAIGG----W---NDS-LGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWE 1466 (2417)
Q Consensus 1395 ~~~~~~~~~~~~v~~~k~~g~Kv~~sigg----w---~~~-~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E 1466 (2417)
+|..-..+ .-.+.++|++|+..+++.-+ | |+. .+..-...-..+..++.|++=|++.++.|.=.||.|++=
T Consensus 99 DW~~D~gQ-rwfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~I 177 (384)
T PF14587_consen 99 DWDADAGQ-RWFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYI 177 (384)
T ss_dssp -TTSSHHH-HHHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEE
T ss_pred CCCCCHHH-HHHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCcccee
Confidence 46553222 22566888999999887664 1 111 000001122344668899999999888887788888753
Q ss_pred Ccccccc-----ccCCCCCChhhHHHHHHHHHHHhcCCCceeEEEeec
Q psy4449 1467 YPTCWQV-----NCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVS 1509 (2417)
Q Consensus 1467 ~p~~~~~-----~~~~~~~~d~~~~~~fv~eL~~~l~~~~~~ls~av~ 1509 (2417)
=|.+..+ +.-.+...+.+....||++|+.+|+++|+.-.|++.
T Consensus 178 sP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~ 225 (384)
T PF14587_consen 178 SPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISAC 225 (384)
T ss_dssp E--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEE
T ss_pred CCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEec
Confidence 2331111 001123456778899999999999998876555553
No 148
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=45.55 E-value=1.1e+02 Score=39.09 Aligned_cols=96 Identities=11% Similarity=0.161 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEec---------CCCCCCCCCchhhhhhhhHHHH-HHHHHHHHHHhhcCCcEEEEEe
Q psy4449 105 SRLNFISSVLEMFDMYKFDGLDLNVK---------DPALNDEDDDDLESIANERSDF-STFIQELSSTLRRNNYQLTLTS 174 (2417)
Q Consensus 105 ~R~~fi~siv~~l~~~~fDGidl~W~---------~p~~~~~~~~~~~~~~~~r~~f-~~ll~eL~~~l~~~~~~Lsv~v 174 (2417)
-.+.|++.+. .+++-|||||+|+-- .|..+.+ .+.-+++.+.|..| ...|+++|+++.. ++.|.+-+
T Consensus 139 ~i~~~~~aA~-~a~~aGfDgveih~~~gyL~~qFlsp~~n~R-~d~yGgs~enr~r~~~eii~avr~~~g~-d~~i~vri 215 (327)
T cd02803 139 IIEDFAAAAR-RAKEAGFDGVEIHGAHGYLLSQFLSPYTNKR-TDEYGGSLENRARFLLEIVAAVREAVGP-DFPVGVRL 215 (327)
T ss_pred HHHHHHHHHH-HHHHcCCCEEEEcchhhhHHHHhcCccccCC-CcccCCCHHHHHHHHHHHHHHHHHHcCC-CceEEEEe
Confidence 3445666554 445689999999864 2443333 33334555555444 3566666666643 46677777
Q ss_pred cCcccccccccC-------Hhhhccc-cceEEEEeccC
Q psy4449 175 PGVIDRKTSLVD-------ISVVAPL-VDLILLKSFNN 204 (2417)
Q Consensus 175 ~p~~~~~~~~yD-------~~~l~~~-vD~v~l~~yd~ 204 (2417)
.+.. .....++ ++.|.+. +|+|.+..-.+
T Consensus 216 s~~~-~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~ 252 (327)
T cd02803 216 SADD-FVPGGLTLEEAIEIAKALEEAGVDALHVSGGSY 252 (327)
T ss_pred chhc-cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCC
Confidence 7642 1111222 2344444 79999877544
No 149
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=45.15 E-value=62 Score=41.77 Aligned_cols=136 Identities=19% Similarity=0.375 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEE--cCCCCCC-----------Cc--------chhHhhcC---HHHHHHHHHHHHHHHHHc
Q psy4449 1768 NKFYEKVTALKKKGVKVTLAI--GGWNDSA-----------GN--------KYSRLVNS---QQARSKFIAHVVNFILEH 1823 (2417)
Q Consensus 1768 ~~~~~~i~~lk~~glKvllsI--GGw~~s~-----------~~--------~fs~~~~~---~~~R~~Fi~siv~~l~~y 1823 (2417)
..+.+.+..+|++|-|+++-| +|..... +. ...+.++. .+-.+.|++.+.. +++-
T Consensus 78 ~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~-a~~a 156 (353)
T cd04735 78 PGLRKLAQAIKSKGAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATRR-AIEA 156 (353)
T ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHHH-HHHc
Confidence 345666778899999988776 2321100 00 00011111 3455678876654 5668
Q ss_pred CCCeEEEeecC---------CCCcc-CCCCCCCcchhhhHH-HHHHHHHHhcCC---CCcEEEEEECCChhhhcccCC--
Q psy4449 1824 NFDGLDLDWEY---------PKCWQ-VDCKQGPASDKQGFA-DLIKELRAAFNP---HDLLLSAAVSPSKAVIDNAYD-- 1887 (2417)
Q Consensus 1824 gfDGiDiDwEy---------P~~~~-~~~~~~~~~d~~~~~-~llkeLr~~l~~---~~~~Ls~av~~~~~~~~~~yd-- 1887 (2417)
|||||+|.--+ |.... .+..++..+++..|. ..|+++|+++.. .++.|.+-+.+.... ..+.+
T Consensus 157 GfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~-~~g~~~e 235 (353)
T cd04735 157 GFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPE-EPGIRME 235 (353)
T ss_pred CCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECccccc-CCCCCHH
Confidence 99999998632 53222 233355556666665 688999999962 467777777654321 12222
Q ss_pred ----c-cccccC-cceEEEEeccC
Q psy4449 1888 ----I-PVMSEN-LDWISVMTYDY 1905 (2417)
Q Consensus 1888 ----~-~~l~~~-vD~i~vMtYD~ 1905 (2417)
+ +.|.+. +|+|+|-...+
T Consensus 236 e~~~i~~~L~~~GvD~I~Vs~g~~ 259 (353)
T cd04735 236 DTLALVDKLADKGLDYLHISLWDF 259 (353)
T ss_pred HHHHHHHHHHHcCCCEEEeccCcc
Confidence 1 233333 89999976543
No 150
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=44.67 E-value=96 Score=42.50 Aligned_cols=123 Identities=11% Similarity=0.085 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhHhcCCEEEE-EeccCCCcCCCchhhhh------------------------------------------
Q psy4449 1400 HILFYERVVTLKKKGVKVSL-AIGGWNDSLGGKYSRLV------------------------------------------ 1436 (2417)
Q Consensus 1400 ~~~~~~~v~~~k~~g~Kv~~-siggw~~~~~~~~~~~~------------------------------------------ 1436 (2417)
.++|.+.|.++|++|||||+ .|-+=.......|...+
T Consensus 75 ~~df~~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 154 (539)
T TIGR02456 75 IDDFKDFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAK 154 (539)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcC
Q ss_pred ----------------cCHHHHHHHHHHHHHHHHHcCCCccccc-----cCCccccccccCCCCCChhhHHHHHHHHHHH
Q psy4449 1437 ----------------NSATARQRFIEHVVKFLLKYQFDGLDLD-----WEYPTCWQVNCDAGPDSDKESFGLFVRELHQ 1495 (2417)
Q Consensus 1437 ----------------~~~~~r~~fi~~iv~~l~~ygfDGvDlD-----~E~p~~~~~~~~~~~~~d~~~~~~fv~eL~~ 1495 (2417)
.+++.|+.+++.+...++ +|+||+-|| ++ -.+....+...-.+|+++|++
T Consensus 155 ~~y~~~f~~~~pdln~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~--------~~~~~~~~~p~~~~f~~~~~~ 225 (539)
T TIGR02456 155 QYYWHRFFSHQPDLNYDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYE--------REGTSCENLPETHEFLKRLRK 225 (539)
T ss_pred eeEEecccCCCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhc--------cCCCccCCCchHHHHHHHHHH
Q ss_pred hcCCCceeEEEeecCChhhhccccchhhhcccCce----EEeeeccc
Q psy4449 1496 AFKPHGLLLSAAVSPSKQVINAAYDVKALSESLDW----ISVMTYDY 1538 (2417)
Q Consensus 1496 ~l~~~~~~ls~av~p~~~~~~~~~d~~~l~~~vD~----i~vMtYD~ 1538 (2417)
.++...--..+..... .....+.+|++- ..-|.|||
T Consensus 226 ~v~~~~p~~~~iaE~~-------~~~~~~~~y~~~~~~~~~d~~f~f 265 (539)
T TIGR02456 226 MVDREYPGRMLLAEAN-------QWPEEVVAYFGDEGDPECHMAFNF 265 (539)
T ss_pred HHHHhCCCeEEEEEeC-------CCHHHHHHhhCCCCCCeeeeEECh
No 151
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=44.39 E-value=1.7e+02 Score=37.63 Aligned_cols=93 Identities=20% Similarity=0.366 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEeecC---------CCC-ccCCCCCCCcchhhhH-HHHHHHHHHhcCCCCcEEEEEE
Q psy4449 1807 QARSKFIAHVVNFILEHNFDGLDLDWEY---------PKC-WQVDCKQGPASDKQGF-ADLIKELRAAFNPHDLLLSAAV 1875 (2417)
Q Consensus 1807 ~~R~~Fi~siv~~l~~ygfDGiDiDwEy---------P~~-~~~~~~~~~~~d~~~~-~~llkeLr~~l~~~~~~Ls~av 1875 (2417)
...+.|++.+.. +++-|||||+|.--+ |.. ...+.-++.-+++..| ...|+++|+++.+ ++.|.+-+
T Consensus 151 ~ii~~~~~aA~~-a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~-d~~v~vri 228 (336)
T cd02932 151 EVVDAFVAAARR-AVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPE-DKPLFVRI 228 (336)
T ss_pred HHHHHHHHHHHH-HHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCC-CceEEEEE
Confidence 445667765544 455799999998632 421 1222234444455444 4688999999853 56777776
Q ss_pred CCChhhhcccCCc-------cccccC-cceEEEEe
Q psy4449 1876 SPSKAVIDNAYDI-------PVMSEN-LDWISVMT 1902 (2417)
Q Consensus 1876 ~~~~~~~~~~yd~-------~~l~~~-vD~i~vMt 1902 (2417)
.+... ...+++. +.|.+. +|||.|..
T Consensus 229 ~~~~~-~~~g~~~~e~~~ia~~Le~~gvd~iev~~ 262 (336)
T cd02932 229 SATDW-VEGGWDLEDSVELAKALKELGVDLIDVSS 262 (336)
T ss_pred ccccc-CCCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 65321 1122322 233332 78998753
No 152
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=44.30 E-value=47 Score=39.04 Aligned_cols=82 Identities=16% Similarity=0.252 Sum_probs=44.5
Q ss_pred hhhhHHHHHHHHhHhcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCc---cccccCCccccccc
Q psy4449 1398 YVHILFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDG---LDLDWEYPTCWQVN 1474 (2417)
Q Consensus 1398 ~~~~~~~~~v~~~k~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDG---vDlD~E~p~~~~~~ 1474 (2417)
.++..|.+.+..+++.|++| |.+ .|.+...+....+.-++..++.++.+++.. +-||+|...
T Consensus 35 ~~d~~~~~n~~~A~~aGl~v----G~Y------hf~~~~~~~~~a~~eA~~f~~~~~~~~l~~~~~~~lDvE~~~----- 99 (196)
T cd06415 35 YVNPKASAQVSSAIANGKMT----GGY------HFARFGGSVSQAKYEADYFLNSAQQAGLPKGSYLALDYEQGS----- 99 (196)
T ss_pred cCCccHHHHHHHHHHCCCee----EEE------EEEecCCCHHHHHHHHHHHHHHhhhcCCCCCCEEEEEEecCC-----
Confidence 45667889999999999866 321 122222333223333444555566666532 678999421
Q ss_pred cCCCCCChhhHHHHHHHHHHH
Q psy4449 1475 CDAGPDSDKESFGLFVRELHQ 1495 (2417)
Q Consensus 1475 ~~~~~~~d~~~~~~fv~eL~~ 1495 (2417)
..........+..||++|++
T Consensus 100 -~~~~~~~~~~~~~f~~~v~~ 119 (196)
T cd06415 100 -GNSKAANTSAILAFMDTIKD 119 (196)
T ss_pred -CCCHHHHHHHHHHHHHHHHH
Confidence 11111122445666777654
No 153
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=44.10 E-value=83 Score=40.67 Aligned_cols=108 Identities=20% Similarity=0.277 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEE--cCCCCCCC-------c------------chhHhhcC---HHHHHHHHHHHHHHHHHc
Q psy4449 1768 NKFYEKVTALKKKGVKVTLAI--GGWNDSAG-------N------------KYSRLVNS---QQARSKFIAHVVNFILEH 1823 (2417)
Q Consensus 1768 ~~~~~~i~~lk~~glKvllsI--GGw~~s~~-------~------------~fs~~~~~---~~~R~~Fi~siv~~l~~y 1823 (2417)
..+.+.+..+|++|-|+++-| +|...... . ...+.++. .+-.+.|++.+ ..+++-
T Consensus 78 ~~~~~l~d~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA-~~a~~a 156 (361)
T cd04747 78 AGWKKVVDEVHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAA-ADARRL 156 (361)
T ss_pred HHHHHHHHHHHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHH-HHHHHc
Confidence 345566677899999998777 22211100 0 00111111 23456777755 455667
Q ss_pred CCCeEEEeecC---------CCCcc-CCCCCCCcchhhhHH-HHHHHHHHhcCCCCcEEEEEECC
Q psy4449 1824 NFDGLDLDWEY---------PKCWQ-VDCKQGPASDKQGFA-DLIKELRAAFNPHDLLLSAAVSP 1877 (2417)
Q Consensus 1824 gfDGiDiDwEy---------P~~~~-~~~~~~~~~d~~~~~-~llkeLr~~l~~~~~~Ls~av~~ 1877 (2417)
|||||+|.--+ |.... .+.-++.-+++..|. ..|+++|++..+ ++.|.+-+.+
T Consensus 157 GfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~-d~~v~vRis~ 220 (361)
T cd04747 157 GFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGP-DFPIILRFSQ 220 (361)
T ss_pred CCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCC-CCeEEEEECc
Confidence 99999998766 54322 222345555665554 578888888843 5677777664
No 154
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=43.45 E-value=1.2e+02 Score=39.42 Aligned_cols=94 Identities=9% Similarity=0.093 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEecC---------CCCCCCCCchhhhhhhhHHHHH-HHHHHHHHHhhcCCcEEEEEe
Q psy4449 105 SRLNFISSVLEMFDMYKFDGLDLNVKD---------PALNDEDDDDLESIANERSDFS-TFIQELSSTLRRNNYQLTLTS 174 (2417)
Q Consensus 105 ~R~~fi~siv~~l~~~~fDGidl~W~~---------p~~~~~~~~~~~~~~~~r~~f~-~ll~eL~~~l~~~~~~Lsv~v 174 (2417)
-.+.|++.+ ...++-|||||+|+--+ |..+.+. +.-+++.|.|-.|. ..|+.+|++.... . |.+-+
T Consensus 157 ii~~f~~AA-~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~Rt-DeYGGslENR~Rf~~Eiv~aVr~~vg~~-~-igvRi 232 (362)
T PRK10605 157 IVNDFRQAI-ANAREAGFDLVELHSAHGYLLHQFLSPSSNQRT-DQYGGSVENRARLVLEVVDAGIAEWGAD-R-IGIRI 232 (362)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEcccccchHHHhcCCcCCCCC-CcCCCcHHHHHHHHHHHHHHHHHHcCCC-e-EEEEE
Confidence 345666654 56777999999996332 5555543 33346677775554 4556666666544 3 77777
Q ss_pred cCcc--cccccccCH--------hhhccc-cceEEEEec
Q psy4449 175 PGVI--DRKTSLVDI--------SVVAPL-VDLILLKSF 202 (2417)
Q Consensus 175 ~p~~--~~~~~~yD~--------~~l~~~-vD~v~l~~y 202 (2417)
.+.. ...+..+++ +.|.+. +|||++...
T Consensus 233 s~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~ 271 (362)
T PRK10605 233 SPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEP 271 (362)
T ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccc
Confidence 7642 112233443 334333 799988764
No 155
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=43.41 E-value=70 Score=39.79 Aligned_cols=29 Identities=31% Similarity=0.558 Sum_probs=23.4
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCCccccccC
Q psy4449 1437 NSATARQRFIEHVVKFLLKYQFDGLDLDWE 1466 (2417)
Q Consensus 1437 ~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E 1466 (2417)
.++..|+.+++ ++.+..++++||+-||-=
T Consensus 142 ~n~~v~~~i~~-~~~~w~~~giDGfR~D~~ 170 (316)
T PF00128_consen 142 ENPEVREYIID-VLKFWIEEGIDGFRLDAA 170 (316)
T ss_dssp TSHHHHHHHHH-HHHHHHHTTESEEEETTG
T ss_pred hhhhhhhhhcc-cccchhhceEeEEEEccc
Confidence 46777777777 888888888999999964
No 156
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=42.84 E-value=92 Score=36.13 Aligned_cols=11 Identities=27% Similarity=0.836 Sum_probs=5.9
Q ss_pred CCCCCccccee
Q psy4449 1213 YPSDCNKYQYC 1223 (2417)
Q Consensus 1213 ~p~dCskYy~C 1223 (2417)
+++.|.++-.|
T Consensus 52 ~~~~C~~~~~C 62 (186)
T PF05283_consen 52 APETCEQHNSC 62 (186)
T ss_pred CcccCCCCccc
Confidence 45566655444
No 157
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=42.66 E-value=1.4e+02 Score=37.65 Aligned_cols=67 Identities=15% Similarity=0.239 Sum_probs=46.3
Q ss_pred HHHHHHHhHhcCCEEEEEeccCCCcCCCch---------------------------hhh--hcCHHHHHHHHHHHHHHH
Q psy4449 1403 FYERVVTLKKKGVKVSLAIGGWNDSLGGKY---------------------------SRL--VNSATARQRFIEHVVKFL 1453 (2417)
Q Consensus 1403 ~~~~v~~~k~~g~Kv~~siggw~~~~~~~~---------------------------~~~--~~~~~~r~~fi~~iv~~l 1453 (2417)
..+-+.++|++|+|+++.|--.-...+..| ..+ +.|+++|+=+.+.+.+++
T Consensus 72 p~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~ 151 (303)
T cd06592 72 PKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQ 151 (303)
T ss_pred HHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHH
Confidence 456778889999999985542100000000 111 368999999999999999
Q ss_pred HHcCCCccccccCCcc
Q psy4449 1454 LKYQFDGLDLDWEYPT 1469 (2417)
Q Consensus 1454 ~~ygfDGvDlD~E~p~ 1469 (2417)
.++|+||+=+|+--|.
T Consensus 152 ~~~Gvdg~w~D~~E~~ 167 (303)
T cd06592 152 EKYGIDSFKFDAGEAS 167 (303)
T ss_pred HHhCCcEEEeCCCCcc
Confidence 8999999999995443
No 158
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=42.06 E-value=46 Score=39.08 Aligned_cols=90 Identities=18% Similarity=0.178 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHhHhcCCEEEEEeccCCCcCCCchhhhh--cCHHHHHHHHHHHHHHHHHcCCC--ccccccCCccccccc
Q psy4449 1399 VHILFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLV--NSATARQRFIEHVVKFLLKYQFD--GLDLDWEYPTCWQVN 1474 (2417)
Q Consensus 1399 ~~~~~~~~v~~~k~~g~Kv~~siggw~~~~~~~~~~~~--~~~~~r~~fi~~iv~~l~~ygfD--GvDlD~E~p~~~~~~ 1474 (2417)
+|..|.+.+..+++.|+++ |-. .|.... .+++.+ ++..++.|+.++.+ -|-||+|...
T Consensus 37 ~D~~f~~n~~~A~~aGl~~----G~Y------hf~~~~~~~~~~~Q---a~~f~~~~~~~~~~~~~i~lDiE~~~----- 98 (196)
T cd06416 37 FDPNSVTNIKNARAAGLST----DVY------FFPCINCCGSAAGQ---VQTFLQYLKANGIKYGTVWIDIEQNP----- 98 (196)
T ss_pred cChHHHHHHHHHHHcCCcc----ceE------EEecCCCCCCHHHH---HHHHHHHHHhCCCceeEEEEEEecCC-----
Confidence 6788999999999999988 221 112211 233222 23333444555544 4569999531
Q ss_pred cCCCCCChhhHHHHHHHHHHHhcCCCceeEEEee
Q psy4449 1475 CDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAV 1508 (2417)
Q Consensus 1475 ~~~~~~~d~~~~~~fv~eL~~~l~~~~~~ls~av 1508 (2417)
.....+.....++|+++-++++..|+...+=.
T Consensus 99 --~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt 130 (196)
T cd06416 99 --CQWSSDVASNCQFLQELVSAAKALGLKVGIYS 130 (196)
T ss_pred --CCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEc
Confidence 11113344455556555555554465444333
No 159
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=41.79 E-value=51 Score=41.70 Aligned_cols=105 Identities=9% Similarity=0.023 Sum_probs=58.4
Q ss_pred ceEEEEecccccccccChHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCCCCchhhhhhhhHHHHHHHHHHHHHHhhc
Q psy4449 86 LKVYLAVKSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRR 165 (2417)
Q Consensus 86 lkvlLsVGg~f~~~~~~~~~R~~fi~siv~~l~~~~fDGidl~W~~p~~~~~~~~~~~~~~~~r~~f~~ll~eL~~~l~~ 165 (2417)
..+.+.|.|.-. ..|++.+. .+++.||||||||.-.|..+-.+.+.......+.+....+|+++++++..
T Consensus 63 ~p~~vQl~g~~p---------~~~~~aA~-~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~ 132 (312)
T PRK10550 63 TLVRIQLLGQYP---------QWLAENAA-RAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPA 132 (312)
T ss_pred CcEEEEeccCCH---------HHHHHHHH-HHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCC
Confidence 457777755322 23555444 45678999999998887532211111112234555567777777776642
Q ss_pred CCcEEEEEecCcccccccccCHhhhc-cc-cceEEEEe
Q psy4449 166 NNYQLTLTSPGVIDRKTSLVDISVVA-PL-VDLILLKS 201 (2417)
Q Consensus 166 ~~~~Lsv~v~p~~~~~~~~yD~~~l~-~~-vD~v~l~~ 201 (2417)
++.|++-+....+..+...++..+. +. +|+|.|.+
T Consensus 133 -~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~ 169 (312)
T PRK10550 133 -HLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHG 169 (312)
T ss_pred -CcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECC
Confidence 3567776655432222233443333 32 78898865
No 160
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=41.29 E-value=1.6e+02 Score=37.05 Aligned_cols=87 Identities=11% Similarity=0.219 Sum_probs=54.7
Q ss_pred HHHHHHHHHh-CCCEEEEEEcCCCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcC-CCeEEEeecCCCCccCCCCCCCc
Q psy4449 1770 FYEKVTALKK-KGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHN-FDGLDLDWEYPKCWQVDCKQGPA 1847 (2417)
Q Consensus 1770 ~~~~i~~lk~-~glKvllsIGGw~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~yg-fDGiDiDwEyP~~~~~~~~~~~~ 1847 (2417)
+.+.+...++ .+..++++|+|.+ .+.|++ +++.++++| ||||+|+.-.|..... .....
T Consensus 79 ~~~~~~~~~~~~~~p~i~si~g~~----------------~~~~~~-~a~~~~~aG~~D~iElN~~cP~~~~g--g~~~~ 139 (301)
T PRK07259 79 FIEEELPWLEEFDTPIIANVAGST----------------EEEYAE-VAEKLSKAPNVDAIELNISCPNVKHG--GMAFG 139 (301)
T ss_pred HHHHHHHHHhccCCcEEEEeccCC----------------HHHHHH-HHHHHhccCCcCEEEEECCCCCCCCC--ccccc
Confidence 4455554443 3788999998732 133444 445668898 9999999977752110 01122
Q ss_pred chhhhHHHHHHHHHHhcCCCCcEEEEEECCC
Q psy4449 1848 SDKQGFADLIKELRAAFNPHDLLLSAAVSPS 1878 (2417)
Q Consensus 1848 ~d~~~~~~llkeLr~~l~~~~~~Ls~av~~~ 1878 (2417)
.+.+.+..+|+++|++. ++-|++-+.+.
T Consensus 140 ~~~~~~~eiv~~vr~~~---~~pv~vKl~~~ 167 (301)
T PRK07259 140 TDPELAYEVVKAVKEVV---KVPVIVKLTPN 167 (301)
T ss_pred cCHHHHHHHHHHHHHhc---CCCEEEEcCCC
Confidence 45567788888898877 45666666543
No 161
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=41.26 E-value=72 Score=38.29 Aligned_cols=110 Identities=19% Similarity=0.255 Sum_probs=60.3
Q ss_pred HHHHhHhcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccCCccccccc--cCCCCCChh
Q psy4449 1406 RVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVN--CDAGPDSDK 1483 (2417)
Q Consensus 1406 ~v~~~k~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~~--~~~~~~~d~ 1483 (2417)
++......+.++++.|+|-. -+.|++. ...+++.|||||+|..=.|...... +.+....+.
T Consensus 46 ~~~~~~~~~~p~~~qi~g~~----------------~~~~~~a-a~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~ 108 (231)
T cd02801 46 RLLTRNPEERPLIVQLGGSD----------------PETLAEA-AKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDP 108 (231)
T ss_pred HhhccCccCCCEEEEEcCCC----------------HHHHHHH-HHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCH
Confidence 33444566799999999732 1344443 3455568999999997655421111 111123456
Q ss_pred hHHHHHHHHHHHhcCCCceeEEEeecCChhhhccccc-hhhhcc-cCceEEeee
Q psy4449 1484 ESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYD-VKALSE-SLDWISVMT 1535 (2417)
Q Consensus 1484 ~~~~~fv~eL~~~l~~~~~~ls~av~p~~~~~~~~~d-~~~l~~-~vD~i~vMt 1535 (2417)
+...++|+++|++++ ..+++-+...........+ ++.|.+ -+|+|.|..
T Consensus 109 ~~~~eii~~v~~~~~---~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~ 159 (231)
T cd02801 109 ELVAEIVRAVREAVP---IPVTVKIRLGWDDEEETLELAKALEDAGASALTVHG 159 (231)
T ss_pred HHHHHHHHHHHHhcC---CCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECC
Confidence 678899999998875 3344444322111001111 123333 378998743
No 162
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=41.01 E-value=65 Score=42.07 Aligned_cols=108 Identities=21% Similarity=0.268 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhCCCEEEEEE--c-CCCCCC-----------Cc--------chhHhhcC---HHHHHHHHHHHHHHHHH
Q psy4449 1768 NKFYEKVTALKKKGVKVTLAI--G-GWNDSA-----------GN--------KYSRLVNS---QQARSKFIAHVVNFILE 1822 (2417)
Q Consensus 1768 ~~~~~~i~~lk~~glKvllsI--G-Gw~~s~-----------~~--------~fs~~~~~---~~~R~~Fi~siv~~l~~ 1822 (2417)
..+.+...+.|++|-|+++-| + |..... +. ...+.++. .+-.+.|++.+ ..+++
T Consensus 83 ~~~k~l~davh~~G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA-~ra~~ 161 (382)
T cd02931 83 RTAKEMTERVHAYGTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESA-VIAKE 161 (382)
T ss_pred HHHHHHHHHHHHcCCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHH-HHHHH
Confidence 456666778899999999887 2 422100 00 00011111 14556777755 45666
Q ss_pred cCCCeEEEee---cCC--------CCccCCCCCCCcchhhhHH-HHHHHHHHhcCCCCcEEEEEECC
Q psy4449 1823 HNFDGLDLDW---EYP--------KCWQVDCKQGPASDKQGFA-DLIKELRAAFNPHDLLLSAAVSP 1877 (2417)
Q Consensus 1823 ygfDGiDiDw---EyP--------~~~~~~~~~~~~~d~~~~~-~llkeLr~~l~~~~~~Ls~av~~ 1877 (2417)
-|||||+|.- -|. .+...+.-++..+++..|+ ..|+++|++.. .++.|.+-+.+
T Consensus 162 AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g-~~f~v~vri~~ 227 (382)
T cd02931 162 AGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCG-EDFPVSLRYSV 227 (382)
T ss_pred cCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcC-CCceEEEEEec
Confidence 8999999987 442 1122233344555665554 68889998884 35677776654
No 163
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=40.72 E-value=1.1e+02 Score=43.83 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEec---------CCCCCCCCCchhhhhhhhHHHHH-HHHHHHHHHhhcCCcEEEEEe
Q psy4449 105 SRLNFISSVLEMFDMYKFDGLDLNVK---------DPALNDEDDDDLESIANERSDFS-TFIQELSSTLRRNNYQLTLTS 174 (2417)
Q Consensus 105 ~R~~fi~siv~~l~~~~fDGidl~W~---------~p~~~~~~~~~~~~~~~~r~~f~-~ll~eL~~~l~~~~~~Lsv~v 174 (2417)
-.+.|++.+. ..++-|||||+|+-- -|..+.+.+.+ +++-+.|-.|. ..|+.+|++... ++.|++-+
T Consensus 549 ~i~~f~~aA~-~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~y-GGslenR~r~~~eiv~~ir~~~~~-~~~v~~ri 625 (765)
T PRK08255 549 VRDDFVAAAR-RAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEY-GGSLENRLRYPLEVFRAVRAVWPA-EKPMSVRI 625 (765)
T ss_pred HHHHHHHHHH-HHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCC-CCCHHHHhHHHHHHHHHHHHhcCC-CCeeEEEE
Confidence 4456777665 456689999999866 46655544333 34555554443 445555555533 57788877
Q ss_pred cCcccccccccCH-------hhhccc-cceEEEEe
Q psy4449 175 PGVIDRKTSLVDI-------SVVAPL-VDLILLKS 201 (2417)
Q Consensus 175 ~p~~~~~~~~yD~-------~~l~~~-vD~v~l~~ 201 (2417)
.+.. -.+...++ +.|.+. +|+|.|..
T Consensus 626 ~~~~-~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~ 659 (765)
T PRK08255 626 SAHD-WVEGGNTPDDAVEIARAFKAAGADLIDVSS 659 (765)
T ss_pred cccc-ccCCCCCHHHHHHHHHHHHhcCCcEEEeCC
Confidence 7642 12222222 334433 79998864
No 164
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=40.50 E-value=1.1e+02 Score=38.46 Aligned_cols=87 Identities=16% Similarity=0.220 Sum_probs=54.0
Q ss_pred HHHHHHHHhH-hcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcC-CCccccccCCccccccccCCCC
Q psy4449 1402 LFYERVVTLK-KKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQ-FDGLDLDWEYPTCWQVNCDAGP 1479 (2417)
Q Consensus 1402 ~~~~~v~~~k-~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~yg-fDGvDlD~E~p~~~~~~~~~~~ 1479 (2417)
.+.+++...+ +.++.|+++|+|.+ .+.|++ ++..++++| +|||+|..-.|... .+ ....
T Consensus 78 ~~~~~~~~~~~~~~~p~i~si~g~~----------------~~~~~~-~a~~~~~aG~~D~iElN~~cP~~~-~g-g~~~ 138 (301)
T PRK07259 78 AFIEEELPWLEEFDTPIIANVAGST----------------EEEYAE-VAEKLSKAPNVDAIELNISCPNVK-HG-GMAF 138 (301)
T ss_pred HHHHHHHHHHhccCCcEEEEeccCC----------------HHHHHH-HHHHHhccCCcCEEEEECCCCCCC-CC-cccc
Confidence 3445555444 34788999998732 245554 444568898 99999998766521 10 0112
Q ss_pred CChhhHHHHHHHHHHHhcCCCceeEEEeecC
Q psy4449 1480 DSDKESFGLFVRELHQAFKPHGLLLSAAVSP 1510 (2417)
Q Consensus 1480 ~~d~~~~~~fv~eL~~~l~~~~~~ls~av~p 1510 (2417)
..+.+...++|+++|++. .+.|++-+.+
T Consensus 139 ~~~~~~~~eiv~~vr~~~---~~pv~vKl~~ 166 (301)
T PRK07259 139 GTDPELAYEVVKAVKEVV---KVPVIVKLTP 166 (301)
T ss_pred ccCHHHHHHHHHHHHHhc---CCCEEEEcCC
Confidence 345677888888888876 3455555554
No 165
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=40.40 E-value=79 Score=40.57 Aligned_cols=105 Identities=15% Similarity=0.233 Sum_probs=65.2
Q ss_pred CccchhccCCHHHHHHHHHHHHHHHHHhCCCccccccccCcch-hc---------------cccccCCCcEEEEcCCCCc
Q psy4449 2275 SDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGLEFAWEYPKCW-QT---------------CSTVKSHEWTVVRDSLGAR 2338 (2417)
Q Consensus 2275 ~~~~~~~~~~~~~r~~f~~~~~~~~~~~~fdgld~~we~p~~~-~~---------------c~~~~~~~~~~~~~~~~~~ 2338 (2417)
...|-.+. +|++|+=|.+..-+++.++|+||.=+|+-=|... +. +..+.+.. .++.-.-|-.
T Consensus 128 ~~~~~Dft-np~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~hN~y~~~~~~~~~~~~~~~~~~r-~~~~sRs~~~ 205 (339)
T cd06602 128 YTVFPDFL-NPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPSNFYDVHNLYGLSEAIATYKALQSIPGKR-PFVISRSTFP 205 (339)
T ss_pred CCcCcCCC-CHHHHHHHHHHHHHHHhcCCCcEEEecCCCCchHhhhcchhhHHHHHHHHHHHHhcCCCC-CEEEEecCcc
Confidence 33555555 8999998877777789999999999998655422 11 21111110 1111111111
Q ss_pred c--ceee--cCCeeeEecchHHHHHHHHHhhhcCCCceeeeecccccccc
Q psy4449 2339 G--PYAY--NGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQN 2384 (2417)
Q Consensus 2339 ~--~~~~--~~~~w~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~dd~~~ 2384 (2417)
| -|+. -||+-.+++ .++.-..-+...+|-|...|.-|+--|.|
T Consensus 206 G~qry~~~w~GD~~s~W~---~L~~~i~~~l~~~~sG~~~~~~DigGf~g 252 (339)
T cd06602 206 GSGRYAGHWLGDNASTWE---DLRYSIIGMLEFNLFGIPMVGADICGFNG 252 (339)
T ss_pred cccccceeECCCccCCHH---HHHHHHHHHHHHHhcCCCcccCCCCCCCC
Confidence 1 2332 344444455 46777777889999999999999987765
No 166
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=39.84 E-value=93 Score=39.55 Aligned_cols=85 Identities=13% Similarity=0.121 Sum_probs=51.4
Q ss_pred cccCCCceEEEEecccccccccChHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCCCCchhhhhhhhHHHHHHHHHHH
Q psy4449 80 KEANPELKVYLAVKSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQEL 159 (2417)
Q Consensus 80 K~~~P~lkvlLsVGg~f~~~~~~~~~R~~fi~siv~~l~~~~fDGidl~W~~p~~~~~~~~~~~~~~~~r~~f~~ll~eL 159 (2417)
+.......+.+.|+|.-. ..|+ .++..++++||||||||.--|..+-.+.........+.+....+|+++
T Consensus 49 ~~~~~e~p~~vQl~g~~p---------~~~~-~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av 118 (318)
T TIGR00742 49 KFSPEESPVALQLGGSDP---------NDLA-KCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAM 118 (318)
T ss_pred ccCCCCCcEEEEEccCCH---------HHHH-HHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHH
Confidence 333345667777765322 1233 345567778999999999877654332222333345666677777777
Q ss_pred HHHhhcCCcEEEEEecCc
Q psy4449 160 SSTLRRNNYQLTLTSPGV 177 (2417)
Q Consensus 160 ~~~l~~~~~~Lsv~v~p~ 177 (2417)
++++ +..|++-+...
T Consensus 119 ~~~~---~~PVsvKiR~g 133 (318)
T TIGR00742 119 QEAV---NIPVTVKHRIG 133 (318)
T ss_pred HHHh---CCCeEEEEecC
Confidence 7776 34567666543
No 167
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=39.56 E-value=47 Score=43.04 Aligned_cols=110 Identities=17% Similarity=0.196 Sum_probs=73.2
Q ss_pred chhhhchhhhhhhccccCCCceEEEEecc--------------------cccccccChHHHHHHHHHHHHHHHhcCCCce
Q psy4449 66 YDVIKGGYKSFLGLKEANPELKVYLAVKS--------------------NFVSITSDRESRLNFISSVLEMFDMYKFDGL 125 (2417)
Q Consensus 66 ~D~~~~~y~~~~~LK~~~P~lkvlLsVGg--------------------~f~~~~~~~~~R~~fi~siv~~l~~~~fDGi 125 (2417)
...+..+-+-+..||+++|++++. +||| .|..++..=..-.+.++.+++.+++..-|-+
T Consensus 8 ~SGD~~ga~Li~~Lk~~~p~~~~~-GvGG~~M~~~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~~~~~~~~~pd~v 86 (373)
T PF02684_consen 8 ASGDLHGARLIRALKARDPDIEFY-GVGGPRMQAAGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKLVERIKEEKPDVV 86 (373)
T ss_pred ccHHHHHHHHHHHHHhhCCCcEEE-EEechHHHhCCCceecchHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 334444556667799999999876 8887 2444444444445667788889999999977
Q ss_pred EEEecCCCCCCCCCchhhhhhhhHHHHHHHHHHHHHHhhcCCcE--EEEEecCcccccccccCHhhhccccceEEE
Q psy4449 126 DLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRRNNYQ--LTLTSPGVIDRKTSLVDISVVAPLVDLILL 199 (2417)
Q Consensus 126 dl~W~~p~~~~~~~~~~~~~~~~r~~f~~ll~eL~~~l~~~~~~--Lsv~v~p~~~~~~~~yD~~~l~~~vD~v~l 199 (2417)
-+= .||. |.. .|.+.+|+.+.. +.--|+|..+.+... -...|.+++|.+..
T Consensus 87 IlI-D~pg------------------FNl---rlak~lk~~~~~~~viyYI~PqvWAWr~~-R~~~i~~~~D~ll~ 139 (373)
T PF02684_consen 87 ILI-DYPG------------------FNL---RLAKKLKKRGIPIKVIYYISPQVWAWRPG-RAKKIKKYVDHLLV 139 (373)
T ss_pred EEe-CCCC------------------ccH---HHHHHHHHhCCCceEEEEECCceeeeCcc-HHHHHHHHHhheeE
Confidence 651 2343 222 234455555654 677788887766543 57999999999754
No 168
>PLN02361 alpha-amylase
Probab=39.36 E-value=1.1e+02 Score=40.05 Aligned_cols=66 Identities=18% Similarity=0.410 Sum_probs=41.9
Q ss_pred hHHHHHHHHhHhcCCEEEEEe------c------c-----------CCCc-------------CCCchh---hhh-cCHH
Q psy4449 1401 ILFYERVVTLKKKGVKVSLAI------G------G-----------WNDS-------------LGGKYS---RLV-NSAT 1440 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~g~Kv~~si------g------g-----------w~~~-------------~~~~~~---~~~-~~~~ 1440 (2417)
++|.+.|.++|++|+||++=| | | |... .+..+. ++- .|+.
T Consensus 76 ~el~~li~~~h~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~ 155 (401)
T PLN02361 76 HLLKSLLRKMKQYNVRAMADIVINHRVGTTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHF 155 (401)
T ss_pred HHHHHHHHHHHHcCCEEEEEEccccccCCCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHH
Confidence 678999999999999999922 1 1 1000 000011 111 4677
Q ss_pred HHHHHHHHHHHHHHHcCCCccccccC
Q psy4449 1441 ARQRFIEHVVKFLLKYQFDGLDLDWE 1466 (2417)
Q Consensus 1441 ~r~~fi~~iv~~l~~ygfDGvDlD~E 1466 (2417)
.|+.+++-+.-++++.||||+-||.=
T Consensus 156 Vr~~l~~~~~wl~~~~GiDGfRlDav 181 (401)
T PLN02361 156 VRKDIIGWLIWLRNDVGFQDFRFDFA 181 (401)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 78877776644444599999999965
No 169
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.33 E-value=2.2e+02 Score=35.91 Aligned_cols=33 Identities=12% Similarity=0.185 Sum_probs=28.9
Q ss_pred hcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCC
Q psy4449 1803 VNSQQARSKFIAHVVNFILEHNFDGLDLDWEYP 1835 (2417)
Q Consensus 1803 ~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP 1835 (2417)
+.+++.|+-+.+.+.+++.++|+||+=+|+--|
T Consensus 134 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 134 FTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCc
Confidence 468999999998888899899999999999544
No 170
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=39.15 E-value=77 Score=40.64 Aligned_cols=69 Identities=16% Similarity=0.265 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEeecC---------CC-CccCCCCCCCcchhhhHH-HHHHHHHHhcCCCCcEEEEEE
Q psy4449 1807 QARSKFIAHVVNFILEHNFDGLDLDWEY---------PK-CWQVDCKQGPASDKQGFA-DLIKELRAAFNPHDLLLSAAV 1875 (2417)
Q Consensus 1807 ~~R~~Fi~siv~~l~~ygfDGiDiDwEy---------P~-~~~~~~~~~~~~d~~~~~-~llkeLr~~l~~~~~~Ls~av 1875 (2417)
+..+.|++.+ ..+++-|||||+|.--+ |. +...+..++..+++..|+ ..|+++|++.... .|.+-+
T Consensus 149 ~ii~~f~~aA-~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d--~v~vRi 225 (338)
T cd02933 149 GIVADFRQAA-RNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD--RVGIRL 225 (338)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC--ceEEEE
Confidence 3445677654 56666799999999776 53 223334455555665554 5788899888654 366666
Q ss_pred CCC
Q psy4449 1876 SPS 1878 (2417)
Q Consensus 1876 ~~~ 1878 (2417)
.+.
T Consensus 226 s~~ 228 (338)
T cd02933 226 SPF 228 (338)
T ss_pred Ccc
Confidence 654
No 171
>PLN02411 12-oxophytodienoate reductase
Probab=38.78 E-value=83 Score=41.17 Aligned_cols=68 Identities=15% Similarity=0.234 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecC---------CCCCCCCCchhhhhhhhHHHHH-HHHHHHHHHhhcCCcEEEEEec
Q psy4449 106 RLNFISSVLEMFDMYKFDGLDLNVKD---------PALNDEDDDDLESIANERSDFS-TFIQELSSTLRRNNYQLTLTSP 175 (2417)
Q Consensus 106 R~~fi~siv~~l~~~~fDGidl~W~~---------p~~~~~~~~~~~~~~~~r~~f~-~ll~eL~~~l~~~~~~Lsv~v~ 175 (2417)
.+.|++.+ ...++-|||||+|+--+ |..+.+ .|.-+++.|.|-.|. ..|+++|++.... + |.+-++
T Consensus 164 i~~f~~AA-~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~R-tDeYGGSlENR~RF~lEIi~aVr~~vg~d-~-vgvRiS 239 (391)
T PLN02411 164 VEHYRQAA-LNAIRAGFDGIEIHGAHGYLIDQFLKDGINDR-TDEYGGSIENRCRFLMQVVQAVVSAIGAD-R-VGVRVS 239 (391)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEccccchHHHHhCCCccCCC-CCcCCCCHHHHhHHHHHHHHHHHHHcCCC-e-EEEEEc
Confidence 44566655 45667999999997443 555544 344456777776665 4566777777654 4 888888
Q ss_pred Cc
Q psy4449 176 GV 177 (2417)
Q Consensus 176 p~ 177 (2417)
+.
T Consensus 240 ~~ 241 (391)
T PLN02411 240 PA 241 (391)
T ss_pred cc
Confidence 64
No 172
>KOG1924|consensus
Probab=38.34 E-value=79 Score=43.00 Aligned_cols=22 Identities=18% Similarity=0.513 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhhCCcceEEE
Q psy4449 484 RKKFIKSVLTFLRRFDFAGLHF 505 (2417)
Q Consensus 484 R~~fi~svv~~l~~ygfDGiDi 505 (2417)
|-.+..+=|+|++++|..|+++
T Consensus 166 RVsL~~npVSwvn~Fgvegl~l 187 (1102)
T KOG1924|consen 166 RVSLTSNPVSWVNKFGVEGLGL 187 (1102)
T ss_pred hhhhcCCccHHHHHhhhhhHHH
Confidence 3344444566777777666653
No 173
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=38.19 E-value=1e+02 Score=39.74 Aligned_cols=132 Identities=14% Similarity=0.121 Sum_probs=66.5
Q ss_pred hHHHHHHHHhHhcCCEEEEEe---ccCCCcC-----C-------CchhhhhcC---HHHHHHHHHHHHHHHHHcCCCccc
Q psy4449 1401 ILFYERVVTLKKKGVKVSLAI---GGWNDSL-----G-------GKYSRLVNS---ATARQRFIEHVVKFLLKYQFDGLD 1462 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~g~Kv~~si---ggw~~~~-----~-------~~~~~~~~~---~~~r~~fi~~iv~~l~~ygfDGvD 1462 (2417)
..+.+.+..+|+.|.|+++-| |.+.... + ....+.+.. .+..+.|++.+.. +++-|||||+
T Consensus 77 ~~~~~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~-a~~aGfDgVe 155 (353)
T cd02930 77 AGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAAL-AREAGYDGVE 155 (353)
T ss_pred HHHHHHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHcCCCEEE
Confidence 445666778899999999877 2222110 0 000111211 2345666666554 4557999999
Q ss_pred cccC---------Cccc-cccccCCCCCChh-hHHHHHHHHHHHhcCCCceeEEEeecCChhhhccccch-------hhh
Q psy4449 1463 LDWE---------YPTC-WQVNCDAGPDSDK-ESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDV-------KAL 1524 (2417)
Q Consensus 1463 lD~E---------~p~~-~~~~~~~~~~~d~-~~~~~fv~eL~~~l~~~~~~ls~av~p~~~~~~~~~d~-------~~l 1524 (2417)
|--- -|.- .-.|--+++-+++ .-..+.|+++|+++.+ ++.|.+-+.+. .....+++. +.|
T Consensus 156 ih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~-d~~v~iRi~~~-D~~~~g~~~~e~~~i~~~L 233 (353)
T cd02930 156 IMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGE-DFIIIYRLSML-DLVEGGSTWEEVVALAKAL 233 (353)
T ss_pred EecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCC-CceEEEEeccc-ccCCCCCCHHHHHHHHHHH
Confidence 9642 1210 0011112222223 4455778888888854 44444444432 111122222 344
Q ss_pred ccc-CceEEeee
Q psy4449 1525 SES-LDWISVMT 1535 (2417)
Q Consensus 1525 ~~~-vD~i~vMt 1535 (2417)
.++ +|+|.|..
T Consensus 234 e~~G~d~i~vs~ 245 (353)
T cd02930 234 EAAGADILNTGI 245 (353)
T ss_pred HHcCCCEEEeCC
Confidence 443 89998843
No 174
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=37.97 E-value=87 Score=40.93 Aligned_cols=75 Identities=11% Similarity=0.103 Sum_probs=46.7
Q ss_pred ccChHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCCCCchhhhhhhhHHHHHHHHHHHHHHhhcCCcEEEEEecC
Q psy4449 100 TSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPG 176 (2417)
Q Consensus 100 ~~~~~~R~~fi~siv~~l~~~~fDGidl~W~~p~~~~~~~~~~~~~~~~r~~f~~ll~eL~~~l~~~~~~Lsv~v~p 176 (2417)
+++++.|+-+.+.+..+|+++++|.|-+|+.............+....+...+..|+++|+++++. +++..+...
T Consensus 162 ~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~--v~iE~CssG 236 (394)
T PF02065_consen 162 LSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPD--VLIENCSSG 236 (394)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTT--SEEEE-BTT
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCC--cEEEeccCC
Confidence 567888888888899999999999999999975432211111123344445566777778777764 355555443
No 175
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=37.73 E-value=57 Score=41.71 Aligned_cols=76 Identities=13% Similarity=0.191 Sum_probs=45.3
Q ss_pred CceEEEEecccccccccChHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCCCCchhhhhhhhHHHHHHHHHHHHHHhh
Q psy4449 85 ELKVYLAVKSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLR 164 (2417)
Q Consensus 85 ~lkvlLsVGg~f~~~~~~~~~R~~fi~siv~~l~~~~fDGidl~W~~p~~~~~~~~~~~~~~~~r~~f~~ll~eL~~~l~ 164 (2417)
...+.+.|+|.-. ..|++ ++..+++.||||||||.--|..+-.+.........+.+....+|+.+++++
T Consensus 64 e~p~~vQl~g~~p---------~~~~~-aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v- 132 (333)
T PRK11815 64 EHPVALQLGGSDP---------ADLAE-AAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAV- 132 (333)
T ss_pred CCcEEEEEeCCCH---------HHHHH-HHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHc-
Confidence 4567777766322 22444 445778899999999988776544332223333445555666667776665
Q ss_pred cCCcEEEEE
Q psy4449 165 RNNYQLTLT 173 (2417)
Q Consensus 165 ~~~~~Lsv~ 173 (2417)
+..|++-
T Consensus 133 --~~pVsvK 139 (333)
T PRK11815 133 --SIPVTVK 139 (333)
T ss_pred --CCceEEE
Confidence 3445553
No 176
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=37.14 E-value=90 Score=36.58 Aligned_cols=80 Identities=16% Similarity=0.224 Sum_probs=45.8
Q ss_pred hhhhHHHHHHHHhHhcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCc---cccccCCccccccc
Q psy4449 1398 YVHILFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDG---LDLDWEYPTCWQVN 1474 (2417)
Q Consensus 1398 ~~~~~~~~~v~~~k~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDG---vDlD~E~p~~~~~~ 1474 (2417)
..|..|.+.+..+++.|++| |.+ .|....+.+.+ ++=++..++.|+++++.. +-||+|...
T Consensus 39 ~~D~~~~~n~~~A~~aGl~v----G~Y------hf~~~~~~~~a-~~eA~~f~~~~~~~~~~~~~~~~lD~E~~~----- 102 (192)
T cd06522 39 YRNPYAASQIANAKAAGLKV----SAY------HYAHYTSAADA-QAEARYFANTAKSLGLSKNTVMVADMEDSS----- 102 (192)
T ss_pred ccChHHHHHHHHHHHCCCee----EEE------EEEecCChHHH-HHHHHHHHHHHHHcCCCCCCceEEEeecCC-----
Confidence 35677889999999999976 322 12222222222 222334444567777652 468999422
Q ss_pred cCCCCCChhhHHHHHHHHHHHh
Q psy4449 1475 CDAGPDSDKESFGLFVRELHQA 1496 (2417)
Q Consensus 1475 ~~~~~~~d~~~~~~fv~eL~~~ 1496 (2417)
....-......|+++|+++
T Consensus 103 ---~~~~~~~~~~~F~~~v~~~ 121 (192)
T cd06522 103 ---SSGNATANVNAFWQTMKAA 121 (192)
T ss_pred ---CcchHHHHHHHHHHHHHHc
Confidence 1223345567788877764
No 177
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=36.54 E-value=6.6e+02 Score=31.15 Aligned_cols=62 Identities=24% Similarity=0.296 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCCEEEEEEcC---CCCCC----CcchhHhhcCHHHH--HHHHHHHHHHHHHcCCCeEEEeec
Q psy4449 1769 KFYEKVTALKKKGVKVTLAIGG---WNDSA----GNKYSRLVNSQQAR--SKFIAHVVNFILEHNFDGLDLDWE 1833 (2417)
Q Consensus 1769 ~~~~~i~~lk~~glKvllsIGG---w~~s~----~~~fs~~~~~~~~R--~~Fi~siv~~l~~ygfDGiDiDwE 1833 (2417)
...+.-+++|+.|+|||+-+-= |.+-+ +..+..|--+..++ -.+-+.++.-|++ .||++||-
T Consensus 105 k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~---eGi~pdmV 175 (403)
T COG3867 105 KAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKK---EGILPDMV 175 (403)
T ss_pred HHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHH---cCCCccce
Confidence 3455667788889999987631 22211 01122111111111 1345556666666 67888886
No 178
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=36.19 E-value=1.7e+02 Score=37.29 Aligned_cols=119 Identities=15% Similarity=0.123 Sum_probs=68.2
Q ss_pred hHHHHHHHHhHhcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccCCccccccccCCCCC
Q psy4449 1401 ILFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPD 1480 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~~~~~~~~ 1480 (2417)
+.+.+++..++..++.++++|+|-+.+. .+.+-+.|++.+-.+ .. ..|+|+|++-.|...+ ....
T Consensus 115 ~~~~~~l~~~~~~~~plivsi~g~~~~~---------~~~~~~d~~~~~~~~-~~-~ad~ielN~scP~~~g----~~~~ 179 (327)
T cd04738 115 DAVAKRLKKRRPRGGPLGVNIGKNKDTP---------LEDAVEDYVIGVRKL-GP-YADYLVVNVSSPNTPG----LRDL 179 (327)
T ss_pred HHHHHHHHHhccCCCeEEEEEeCCCCCc---------ccccHHHHHHHHHHH-Hh-hCCEEEEECCCCCCCc----cccc
Confidence 4556667665555789999999854210 112233444433332 22 3899999998776321 2235
Q ss_pred ChhhHHHHHHHHHHHhcCC--CceeEEEeecCChhhhccccch-hhhc-ccCceEEeee
Q psy4449 1481 SDKESFGLFVRELHQAFKP--HGLLLSAAVSPSKQVINAAYDV-KALS-ESLDWISVMT 1535 (2417)
Q Consensus 1481 ~d~~~~~~fv~eL~~~l~~--~~~~ls~av~p~~~~~~~~~d~-~~l~-~~vD~i~vMt 1535 (2417)
.+.+.+.++|+++|+++.. +++-|.+-++|.... ..-..+ +.+. .-+|+|.+..
T Consensus 180 ~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~-~~~~~ia~~l~~aGad~I~~~n 237 (327)
T cd04738 180 QGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSD-EELEDIADVALEHGVDGIIATN 237 (327)
T ss_pred cCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCH-HHHHHHHHHHHHcCCcEEEEEC
Confidence 6788899999999998852 234566666654210 011112 1222 2578887654
No 179
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=36.05 E-value=1.2e+02 Score=37.97 Aligned_cols=108 Identities=17% Similarity=0.172 Sum_probs=66.6
Q ss_pred HHHHHhHhcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcC-CCccccccCCccccccccCCCCCChh
Q psy4449 1405 ERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQ-FDGLDLDWEYPTCWQVNCDAGPDSDK 1483 (2417)
Q Consensus 1405 ~~v~~~k~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~yg-fDGvDlD~E~p~~~~~~~~~~~~~d~ 1483 (2417)
-.+..+.+.|..+++.|--+....| .-+.++-+.+.+.|++-|++.| +|||=|+.== --......
T Consensus 49 g~~~~a~~~g~e~vp~~~a~A~P~G------~v~~~aye~l~~eil~~l~~agp~Dgv~L~LHG--------Amv~e~~~ 114 (292)
T PF07364_consen 49 GFLDAAEAQGWEVVPLLWAAAEPGG------PVTREAYERLRDEILDRLRAAGPLDGVLLDLHG--------AMVAEGYD 114 (292)
T ss_dssp HHHHHHHHTT-EEEEEEEEEE-SEE-------B-HHHHHHHHHHHHHHHHHS---SEEEEEE-S-----------BSS-S
T ss_pred HHHHHHHHCCCEEEeeEeeeecCCC------cccHHHHHHHHHHHHHHHHhcCCcCEEEEeccC--------cEeecCCC
Confidence 3555677889999999987655433 3466778899999999999996 9999999871 01122223
Q ss_pred hHHHHHHHHHHHhcCCCceeEEEeecCChhhhccccchhhhcccCceEEe
Q psy4449 1484 ESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVKALSESLDWISV 1533 (2417)
Q Consensus 1484 ~~~~~fv~eL~~~l~~~~~~ls~av~p~~~~~~~~~d~~~l~~~vD~i~v 1533 (2417)
+.=-.||++||+.+++ +..|.+++-+.... -++|.+.+|.+..
T Consensus 115 D~EG~Ll~rvR~~vGp-~vpI~~tlDlHaNv------s~~mv~~ad~~~~ 157 (292)
T PF07364_consen 115 DGEGDLLRRVRAIVGP-DVPIAATLDLHANV------SPRMVEAADIIVG 157 (292)
T ss_dssp SHHHHHHHHHHHHHTT-TSEEEEEE-TT----------HHHHHH-SEEEE
T ss_pred CchHHHHHHHHHHhCC-CCeEEEEeCCCCCc------cHHHHHhCCEEEE
Confidence 3445699999999965 45555555443222 2677778887654
No 180
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=36.03 E-value=4e+02 Score=34.60 Aligned_cols=94 Identities=14% Similarity=0.226 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEeecC---------CCCc-cCCCCCCCcchhhhHH-HHHHHHHHhcCCCCcEEEEEE
Q psy4449 1807 QARSKFIAHVVNFILEHNFDGLDLDWEY---------PKCW-QVDCKQGPASDKQGFA-DLIKELRAAFNPHDLLLSAAV 1875 (2417)
Q Consensus 1807 ~~R~~Fi~siv~~l~~ygfDGiDiDwEy---------P~~~-~~~~~~~~~~d~~~~~-~llkeLr~~l~~~~~~Ls~av 1875 (2417)
+..+.|++.+ ...++-|||||.|.--+ |... ..|.-+++.++|..|+ ..|+++|++.... + |.+-+
T Consensus 156 ~ii~~f~~AA-~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~-~-igvRi 232 (362)
T PRK10605 156 GIVNDFRQAI-ANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGAD-R-IGIRI 232 (362)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCC-e-EEEEE
Confidence 4556777755 56677899999997432 3211 1233355666776665 5788889988654 3 66666
Q ss_pred CCChh--hhcccCCc--------cccccC-cceEEEEec
Q psy4449 1876 SPSKA--VIDNAYDI--------PVMSEN-LDWISVMTY 1903 (2417)
Q Consensus 1876 ~~~~~--~~~~~yd~--------~~l~~~-vD~i~vMtY 1903 (2417)
++... ....+++. +.|.+. +|+|+|..-
T Consensus 233 s~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~ 271 (362)
T PRK10605 233 SPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEP 271 (362)
T ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccc
Confidence 65421 11233443 233333 799999753
No 181
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=35.83 E-value=1.2e+02 Score=38.63 Aligned_cols=66 Identities=17% Similarity=0.260 Sum_probs=46.1
Q ss_pred HHHHHHHHHhCCCEEEEEEc----------------CC--CCCCC----------cchhHhhcCHHHHHHHHHHHHHHHH
Q psy4449 1770 FYEKVTALKKKGVKVTLAIG----------------GW--NDSAG----------NKYSRLVNSQQARSKFIAHVVNFIL 1821 (2417)
Q Consensus 1770 ~~~~i~~lk~~glKvllsIG----------------Gw--~~s~~----------~~fs~~~~~~~~R~~Fi~siv~~l~ 1821 (2417)
..+.|..||++|+||++.|- |. ....+ ..+- =+.+++.|+-|.+.+.+.+.
T Consensus 68 p~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~-Dftnp~a~~w~~~~~~~~~~ 146 (319)
T cd06591 68 PKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFY-DATNPEAREYYWKQLKKNYY 146 (319)
T ss_pred HHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCcccc-CCCCHHHHHHHHHHHHHHhh
Confidence 35678889999999998761 10 00000 0111 14578999999999999999
Q ss_pred HcCCCeEEEeecCCC
Q psy4449 1822 EHNFDGLDLDWEYPK 1836 (2417)
Q Consensus 1822 ~ygfDGiDiDwEyP~ 1836 (2417)
++|+||+=+|+--|.
T Consensus 147 ~~Gvdg~w~D~~Ep~ 161 (319)
T cd06591 147 DKGVDAWWLDAAEPE 161 (319)
T ss_pred cCCCcEEEecCCCCC
Confidence 999999999995443
No 182
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=35.34 E-value=1.3e+02 Score=38.34 Aligned_cols=104 Identities=17% Similarity=0.305 Sum_probs=64.7
Q ss_pred cchhccCCHHHHHHHHHHHHHHHHHhCCCccccccccCcchhc-----------------cccc-cCCCcEEEEcCCCCc
Q psy4449 2277 KYSRLVNDIPARRNFVRHVTEFLEFYGFNGLEFAWEYPKCWQT-----------------CSTV-KSHEWTVVRDSLGAR 2338 (2417)
Q Consensus 2277 ~~~~~~~~~~~r~~f~~~~~~~~~~~~fdgld~~we~p~~~~~-----------------c~~~-~~~~~~~~~~~~~~~ 2338 (2417)
.|-.+. +|++|+=|.+.+-+|+.++|+||+=+|+-=|.-.+. ...- +.....+++---.-.
T Consensus 125 ~~~Dft-np~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~ 203 (317)
T cd06600 125 VYPDFT-NPDTREWWAGLFSEWLNSQGVDGIWLDMNEPSDFEKVHNLYGLYEAMATAEGFRTSHPRNRIFILTRSGFAGS 203 (317)
T ss_pred cccCCC-ChHHHHHHHHHHHHHhhcCCCceEEeeCCCCccHHHhcchhhHHHHHHHHHHHHHhcCCCCceEEEecccccc
Confidence 344555 999999998888888889999999999855532221 1100 111222222211111
Q ss_pred cceee--cCCeeeEecchHHHHHHHHHhhhcCCCceeeeecccccccc
Q psy4449 2339 GPYAY--NGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQN 2384 (2417)
Q Consensus 2339 ~~~~~--~~~~w~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~dd~~~ 2384 (2417)
+-|+. -||+-.++| .|+.-..-+..+||-|...|.-|+--|.|
T Consensus 204 qry~~~W~GD~~s~W~---~L~~~i~~~l~~gl~G~p~~g~DiGGf~~ 248 (317)
T cd06600 204 QKYAAIWTGDNTASWD---DLKLSIPLVLGLSISGIPFVGCDIGGFQG 248 (317)
T ss_pred CCccceECCcccccHH---HHHHHHHHHHHHHhcCCCccCcccCCCCC
Confidence 12332 355545554 36777777889999999999999966654
No 183
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=34.74 E-value=1.2e+02 Score=38.61 Aligned_cols=102 Identities=16% Similarity=0.136 Sum_probs=60.6
Q ss_pred CCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccCCccccccccCCC--CCChhhHHHHHHH
Q psy4449 1414 GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAG--PDSDKESFGLFVR 1491 (2417)
Q Consensus 1414 g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~~~~~~--~~~d~~~~~~fv~ 1491 (2417)
+..+++.|+|-+ -+.|++.+. .+++.|||||||..-.|..--+....+ --.+.+...++|+
T Consensus 62 e~p~~vQl~g~~----------------p~~~~~aA~-~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~ 124 (312)
T PRK10550 62 GTLVRIQLLGQY----------------PQWLAENAA-RAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 (312)
T ss_pred CCcEEEEeccCC----------------HHHHHHHHH-HHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHH
Confidence 467889998743 244555443 456689999999999886222221121 2467788899999
Q ss_pred HHHHhcCCCceeEEEeecCChhhhccccchhh-hcc-cCceEEe
Q psy4449 1492 ELHQAFKPHGLLLSAAVSPSKQVINAAYDVKA-LSE-SLDWISV 1533 (2417)
Q Consensus 1492 eL~~~l~~~~~~ls~av~p~~~~~~~~~d~~~-l~~-~vD~i~v 1533 (2417)
++++++.. ++-|++-+...........++.. +.+ -+|.|.|
T Consensus 125 avr~~~~~-~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~V 167 (312)
T PRK10550 125 AMREAVPA-HLPVTVKVRLGWDSGERKFEIADAVQQAGATELVV 167 (312)
T ss_pred HHHHhcCC-CcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEE
Confidence 99998832 45666666543211111223322 222 3777766
No 184
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=34.67 E-value=2e+02 Score=34.95 Aligned_cols=86 Identities=15% Similarity=0.190 Sum_probs=55.5
Q ss_pred HHHHHHhHhcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccCCcccccc--ccCCCCCC
Q psy4449 1404 YERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQV--NCDAGPDS 1481 (2417)
Q Consensus 1404 ~~~v~~~k~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~--~~~~~~~~ 1481 (2417)
.+.+..+++.+..+.+.|.|-+ + +.+ ..++..++++ .|+|||+...|...-+ ++...--.
T Consensus 62 ~~~~~~~~~~~~p~~vqi~g~~-------------~---~~~-~~aa~~~~~~-~~~ielN~gCP~~~v~~~g~G~~Ll~ 123 (233)
T cd02911 62 EGEIKALKDSNVLVGVNVRSSS-------------L---EPL-LNAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLK 123 (233)
T ss_pred HHHHHHhhccCCeEEEEecCCC-------------H---HHH-HHHHHHHhhc-CCEEEEECCCCcHHHhcCCcchHHcC
Confidence 3455567777889999998732 1 222 3455566665 5999999998763211 11122235
Q ss_pred hhhHHHHHHHHHHHhcCCCceeEEEeecCC
Q psy4449 1482 DKESFGLFVRELHQAFKPHGLLLSAAVSPS 1511 (2417)
Q Consensus 1482 d~~~~~~fv~eL~~~l~~~~~~ls~av~p~ 1511 (2417)
+.+...++|+++|+. ++.+++-+.+.
T Consensus 124 ~p~~l~eiv~avr~~----~~pVsvKir~g 149 (233)
T cd02911 124 DPERLSEFIKALKET----GVPVSVKIRAG 149 (233)
T ss_pred CHHHHHHHHHHHHhc----CCCEEEEEcCC
Confidence 678889999999873 56677777654
No 185
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=33.95 E-value=98 Score=39.42 Aligned_cols=95 Identities=21% Similarity=0.298 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEeecC---------CC-CccCCCCCCCcchhhhH-HHHHHHHHHhcCCCCcEEEEEE
Q psy4449 1807 QARSKFIAHVVNFILEHNFDGLDLDWEY---------PK-CWQVDCKQGPASDKQGF-ADLIKELRAAFNPHDLLLSAAV 1875 (2417)
Q Consensus 1807 ~~R~~Fi~siv~~l~~ygfDGiDiDwEy---------P~-~~~~~~~~~~~~d~~~~-~~llkeLr~~l~~~~~~Ls~av 1875 (2417)
+..+.|++.+. .+++-|||||+|.--+ |. +...+..++..+++..| ...|+++|+++.. ++.|.+-+
T Consensus 138 ~~i~~~~~aA~-~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~-d~~i~vri 215 (327)
T cd02803 138 QIIEDFAAAAR-RAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGP-DFPVGVRL 215 (327)
T ss_pred HHHHHHHHHHH-HHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCC-CceEEEEe
Confidence 34455666554 4456799999998642 22 11122223444444444 4678889988853 56777777
Q ss_pred CCChhhhcccCC-------ccccccC-cceEEEEecc
Q psy4449 1876 SPSKAVIDNAYD-------IPVMSEN-LDWISVMTYD 1904 (2417)
Q Consensus 1876 ~~~~~~~~~~yd-------~~~l~~~-vD~i~vMtYD 1904 (2417)
.+.... ..+++ ++.|.+. +|||.|..-+
T Consensus 216 s~~~~~-~~g~~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 216 SADDFV-PGGLTLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred chhccC-CCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 654211 11122 2233333 8999986544
No 186
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=33.33 E-value=1.3e+02 Score=38.78 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=69.7
Q ss_pred hHHHHHHHHhHhcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccCCccccccccCCCCC
Q psy4449 1401 ILFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPD 1480 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~~~~~~~~ 1480 (2417)
+.+.+++..++ .++.|+++|+|-... .....-+.|++.+-.+ .. +.|+|+|.+-.|... +....
T Consensus 125 ~~~~~~l~~~~-~~~pvivsI~~~~~~---------~~~~~~~d~~~~~~~~-~~-~ad~lelN~scP~~~----g~~~~ 188 (344)
T PRK05286 125 DALAERLKKAY-RGIPLGINIGKNKDT---------PLEDAVDDYLICLEKL-YP-YADYFTVNISSPNTP----GLRDL 188 (344)
T ss_pred HHHHHHHHHhc-CCCcEEEEEecCCCC---------CcccCHHHHHHHHHHH-Hh-hCCEEEEEccCCCCC----Ccccc
Confidence 45666777666 678999999884211 0111234444444333 33 499999999877532 12235
Q ss_pred ChhhHHHHHHHHHHHhcCCC--ceeEEEeecCChhhhccccch-hhhc-ccCceEEeee
Q psy4449 1481 SDKESFGLFVRELHQAFKPH--GLLLSAAVSPSKQVINAAYDV-KALS-ESLDWISVMT 1535 (2417)
Q Consensus 1481 ~d~~~~~~fv~eL~~~l~~~--~~~ls~av~p~~~~~~~~~d~-~~l~-~~vD~i~vMt 1535 (2417)
.+.+.+.+.|+++|++++.. ++-|.+-++|.... ..-.++ +.+. .-+|.|.+..
T Consensus 189 ~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~-~~~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 189 QYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSD-EELDDIADLALEHGIDGVIATN 246 (344)
T ss_pred cCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCH-HHHHHHHHHHHHhCCcEEEEeC
Confidence 67788999999999988521 35566666664211 011112 1222 2588988865
No 187
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=33.05 E-value=1.8e+02 Score=35.72 Aligned_cols=60 Identities=22% Similarity=0.297 Sum_probs=34.1
Q ss_pred HHHHHHhHhcCCEEEEEecc---CCCcCC----CchhhhhcCHHHHH---HHHHHHHHHHHHcCCCccccccCC
Q psy4449 1404 YERVVTLKKKGVKVSLAIGG---WNDSLG----GKYSRLVNSATARQ---RFIEHVVKFLLKYQFDGLDLDWEY 1467 (2417)
Q Consensus 1404 ~~~v~~~k~~g~Kv~~sigg---w~~~~~----~~~~~~~~~~~~r~---~fi~~iv~~l~~ygfDGvDlD~E~ 1467 (2417)
.+.-+.+|+.|+|||+-..= |.|..- +.+.. ++-++.++ .|-...+..|++ .||++||-.
T Consensus 107 ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~-l~fe~lk~avy~yTk~~l~~m~~---eGi~pdmVQ 176 (403)
T COG3867 107 IEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWEN-LNFEQLKKAVYSYTKYVLTTMKK---EGILPDMVQ 176 (403)
T ss_pred HHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhh-cCHHHHHHHHHHHHHHHHHHHHH---cCCCccceE
Confidence 44556778889999997653 544311 11111 11122222 255666666666 689999973
No 188
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=33.01 E-value=1.3e+02 Score=38.12 Aligned_cols=104 Identities=9% Similarity=0.073 Sum_probs=55.2
Q ss_pred CCCceEEEEecccccccccChHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCCCCchhhhh--hhhHHHHHHHHHHHH
Q psy4449 83 NPELKVYLAVKSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESI--ANERSDFSTFIQELS 160 (2417)
Q Consensus 83 ~P~lkvlLsVGg~f~~~~~~~~~R~~fi~siv~~l~~~~fDGidl~W~~p~~~~~~~~~~~~~--~~~r~~f~~ll~eL~ 160 (2417)
..+..+.+.|+|.-. ..|++ ++..+++.||||||||.--|..+-. +...++ ..+.+....+|+.++
T Consensus 60 ~~~~p~i~ql~g~~~---------~~~~~-aa~~~~~~G~d~IelN~gcP~~~~~--~~~~Gs~l~~~~~~~~ei~~~vr 127 (319)
T TIGR00737 60 EDETPISVQLFGSDP---------DTMAE-AAKINEELGADIIDINMGCPVPKIT--KKGAGSALLRDPDLIGKIVKAVV 127 (319)
T ss_pred CccceEEEEEeCCCH---------HHHHH-HHHHHHhCCCCEEEEECCCCHHHhc--CCCccchHhCCHHHHHHHHHHHH
Confidence 335667788866443 22443 3446678999999999887743211 112222 234445556666666
Q ss_pred HHhhcCCcEEEEEecCcccc-cccccCH-hhhccc-cceEEEEe
Q psy4449 161 STLRRNNYQLTLTSPGVIDR-KTSLVDI-SVVAPL-VDLILLKS 201 (2417)
Q Consensus 161 ~~l~~~~~~Lsv~v~p~~~~-~~~~yD~-~~l~~~-vD~v~l~~ 201 (2417)
+++ ++.|++-+...... .....++ ..|.+. +|+|.+..
T Consensus 128 ~~~---~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~ 168 (319)
T TIGR00737 128 DAV---DIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHG 168 (319)
T ss_pred hhc---CCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEc
Confidence 655 34566655432111 1111122 334333 79998854
No 189
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=32.84 E-value=1.7e+02 Score=40.11 Aligned_cols=61 Identities=18% Similarity=0.204 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCccccccC--Cccc-ccccc----CCCCCChhhHHHHHHHHHHHhcCC
Q psy4449 1438 SATARQRFIEHVVKFLLKYQFDGLDLDWE--YPTC-WQVNC----DAGPDSDKESFGLFVRELHQAFKP 1499 (2417)
Q Consensus 1438 ~~~~r~~fi~~iv~~l~~ygfDGvDlD~E--~p~~-~~~~~----~~~~~~d~~~~~~fv~eL~~~l~~ 1499 (2417)
|+..|+.+++ ++.+..+.|+||+-||-= .+.- ...+. ......+.+...+|++++|+.++.
T Consensus 168 np~v~~~i~~-~~~~W~~~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 235 (543)
T TIGR02403 168 NPEVREELKD-VVNFWRDKGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFG 235 (543)
T ss_pred CHHHHHHHHH-HHHHHHHcCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhc
Confidence 6677765555 666666789999999932 1000 00000 000123456678999999988854
No 190
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=32.67 E-value=84 Score=37.02 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=17.3
Q ss_pred hhhhhHHHHHHHHhHhcCCEE
Q psy4449 1397 TYVHILFYERVVTLKKKGVKV 1417 (2417)
Q Consensus 1397 ~~~~~~~~~~v~~~k~~g~Kv 1417 (2417)
..+|..|.+.+..+++.|+++
T Consensus 35 ~~~D~~~~~n~~~A~~aGl~~ 55 (199)
T cd06412 35 SYTNPRFSSQYNGAYNAGLIR 55 (199)
T ss_pred CccChhHHHHHHHHHHcCCce
Confidence 346678899999999999866
No 191
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=31.72 E-value=2e+02 Score=34.86 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=47.9
Q ss_pred hcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccCCcccccc-ccCCCC---CChhhHHH
Q psy4449 1412 KKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQV-NCDAGP---DSDKESFG 1487 (2417)
Q Consensus 1412 ~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~-~~~~~~---~~d~~~~~ 1487 (2417)
+.+-+|++-|.|||.+. ..-+..+.++....+|+|+-|=|-||+.... ++.... ..-...|.
T Consensus 15 ~~~~~vlvfVHGyn~~f--------------~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~~~Y~~d~~~a~~s~~~l~ 80 (233)
T PF05990_consen 15 SPDKEVLVFVHGYNNSF--------------EDALRRAAQLAHDLGFPGVVILFSWPSDGSLLGYFYDRESARFSGPALA 80 (233)
T ss_pred CCCCeEEEEEeCCCCCH--------------HHHHHHHHHHHHHhCCCceEEEEEcCCCCChhhhhhhhhhHHHHHHHHH
Confidence 45799999999999652 1223444556677889999999999985332 111100 12246788
Q ss_pred HHHHHHHHhc
Q psy4449 1488 LFVRELHQAF 1497 (2417)
Q Consensus 1488 ~fv~eL~~~l 1497 (2417)
.||++|++..
T Consensus 81 ~~L~~L~~~~ 90 (233)
T PF05990_consen 81 RFLRDLARAP 90 (233)
T ss_pred HHHHHHHhcc
Confidence 9999998874
No 192
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=31.27 E-value=91 Score=40.11 Aligned_cols=73 Identities=12% Similarity=0.204 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCCCC---chhhhhhhhHHHHHHHHHHHHHHhhcCCcEEEEEec
Q psy4449 103 RESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDD---DDLESIANERSDFSTFIQELSSTLRRNNYQLTLTSP 175 (2417)
Q Consensus 103 ~~~R~~fi~siv~~l~~~~fDGidl~W~~p~~~~~~~---~~~~~~~~~r~~f~~ll~eL~~~l~~~~~~Lsv~v~ 175 (2417)
+..++.|+.=++..++.+.=.||.|++--|.++|... +.-++..-+.+....||++|+.+|+++++.-.|+++
T Consensus 150 ~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~ 225 (384)
T PF14587_consen 150 PDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISAC 225 (384)
T ss_dssp TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEec
Confidence 4678889998888888888889999888887777533 123455667778899999999999999987555554
No 193
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=31.12 E-value=1.3e+02 Score=36.77 Aligned_cols=107 Identities=18% Similarity=0.167 Sum_probs=58.3
Q ss_pred HHHHHHhHhcCCEEEE--Eecc-------CCCcCCCchhhh-------------hc--CHHHHHHHHHHHHHHHHHcCCC
Q psy4449 1404 YERVVTLKKKGVKVSL--AIGG-------WNDSLGGKYSRL-------------VN--SATARQRFIEHVVKFLLKYQFD 1459 (2417)
Q Consensus 1404 ~~~v~~~k~~g~Kv~~--sigg-------w~~~~~~~~~~~-------------~~--~~~~r~~fi~~iv~~l~~ygfD 1459 (2417)
.+.|+.+++.|+|++. +||- |+.+.-.+-.+. |+ +++. +..|.+-++-|.+.|||
T Consensus 63 ~eelr~~~~gg~~pIAYlsIg~ae~yR~Ywd~~w~~~~p~wLg~edP~W~Gny~VkYW~~eW-kdii~~~l~rL~d~Gfd 141 (300)
T COG2342 63 IEELRTKADGGVKPIAYLSIGEAESYRFYWDKYWLTGRPDWLGEEDPEWPGNYAVKYWEPEW-KDIIRSYLDRLIDQGFD 141 (300)
T ss_pred HHHHHHHhcCCeeEEEEEechhhhhhhhHhhhhhhcCCcccccCCCCCCCCCceeeccCHHH-HHHHHHHHHHHHHccCc
Confidence 4678888888877764 7773 111100000111 11 3334 44556777778888999
Q ss_pred ccccccCCc-cccccccCCCCCChhhHHHHHHHHHHHhcCCCceeEEEeecCC
Q psy4449 1460 GLDLDWEYP-TCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPS 1511 (2417)
Q Consensus 1460 GvDlD~E~p-~~~~~~~~~~~~~d~~~~~~fv~eL~~~l~~~~~~ls~av~p~ 1511 (2417)
||=||+==+ -.++...+.........-.+|+.+|++..+...=++-+-+..+
T Consensus 142 GvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi~qng 194 (300)
T COG2342 142 GVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANPLFRVIPQNG 194 (300)
T ss_pred eEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCCcEEEEeccc
Confidence 999997311 1122222223345556677888888777765433344444333
No 194
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=30.72 E-value=1.1e+02 Score=38.78 Aligned_cols=67 Identities=18% Similarity=0.171 Sum_probs=46.4
Q ss_pred HHHHHHHhHhcCCEEEEEeccC------------------CCcCCCc-------hhhh--hcCHHHHHHHHHHHHHHHHH
Q psy4449 1403 FYERVVTLKKKGVKVSLAIGGW------------------NDSLGGK-------YSRL--VNSATARQRFIEHVVKFLLK 1455 (2417)
Q Consensus 1403 ~~~~v~~~k~~g~Kv~~siggw------------------~~~~~~~-------~~~~--~~~~~~r~~fi~~iv~~l~~ 1455 (2417)
..+-|..||++|+||++.|--. .+..+.. ...+ +.++++|+-|.+.+.+.+.+
T Consensus 68 p~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~ 147 (319)
T cd06591 68 PKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYD 147 (319)
T ss_pred HHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhc
Confidence 3567888999999999876210 0000000 0112 35889999999999999999
Q ss_pred cCCCccccccCCcc
Q psy4449 1456 YQFDGLDLDWEYPT 1469 (2417)
Q Consensus 1456 ygfDGvDlD~E~p~ 1469 (2417)
+|+||+=+|+--|.
T Consensus 148 ~Gvdg~w~D~~Ep~ 161 (319)
T cd06591 148 KGVDAWWLDAAEPE 161 (319)
T ss_pred CCCcEEEecCCCCC
Confidence 99999999994344
No 195
>PRK13335 superantigen-like protein; Reviewed
Probab=30.64 E-value=57 Score=40.36 Aligned_cols=7 Identities=29% Similarity=0.819 Sum_probs=3.1
Q ss_pred eEEEEec
Q psy4449 1341 KIVCYFT 1347 (2417)
Q Consensus 1341 ~vv~y~~ 1347 (2417)
.+-.||+
T Consensus 170 dLk~YYs 176 (356)
T PRK13335 170 DLRAYYT 176 (356)
T ss_pred HHHHhcc
Confidence 3344554
No 196
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=30.62 E-value=86 Score=42.81 Aligned_cols=115 Identities=15% Similarity=0.110 Sum_probs=74.8
Q ss_pred cchhhhchhhhhhhccccCCCceEEEEecc--------------------cccccccChHHHHHHHHHHHHHHHhcCCCc
Q psy4449 65 EYDVIKGGYKSFLGLKEANPELKVYLAVKS--------------------NFVSITSDRESRLNFISSVLEMFDMYKFDG 124 (2417)
Q Consensus 65 ~~D~~~~~y~~~~~LK~~~P~lkvlLsVGg--------------------~f~~~~~~~~~R~~fi~siv~~l~~~~fDG 124 (2417)
|...|..+-+-+.+||+++|++++. +||| .+..++..=-.-.+..+.+++.+++.+-|-
T Consensus 235 E~SGDlhgA~Li~aLk~~~P~i~~~-GvGG~~M~aaG~e~l~d~~eLsVmG~~EVL~~l~~l~~~~~~l~~~i~~~kPD~ 313 (608)
T PRK01021 235 EHSGDTLGGNLLKEIKALYPDIHCF-GVGGPQMRAEGFHPLFNMEEFQVSGFWEVLLALFKLWYRYRKLYKTILKTNPRT 313 (608)
T ss_pred cccHHHHHHHHHHHHHhcCCCcEEE-EEccHHHHhCcCcccCChHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 4444555666677899999997665 8888 233344444444556778888888999997
Q ss_pred eEEEecCCCCCCCCCchhhhhhhhHHHHHHHHHHHHHHhhcCCc--EEEEEecCcccccccccCHhhhccccceEEEEec
Q psy4449 125 LDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRRNNY--QLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF 202 (2417)
Q Consensus 125 idl~W~~p~~~~~~~~~~~~~~~~r~~f~~ll~eL~~~l~~~~~--~Lsv~v~p~~~~~~~~yD~~~l~~~vD~v~l~~y 202 (2417)
+-+ =.||. |.-. |.+.+|+.|. .+.--|+|..+.+... -+++|.+++|.+... +
T Consensus 314 vIl-ID~Pg------------------FNlr---LAK~lkk~Gi~ipviyYVsPqVWAWR~~-Rikki~k~vD~ll~I-f 369 (608)
T PRK01021 314 VIC-IDFPD------------------FHFL---LIKKLRKRGYKGKIVHYVCPSIWAWRPK-RKTILEKYLDLLLLI-L 369 (608)
T ss_pred EEE-eCCCC------------------CCHH---HHHHHHhcCCCCCEEEEECccceeeCcc-hHHHHHHHhhhheec-C
Confidence 766 23443 3322 3344444563 5666788887777654 679999999987553 4
Q ss_pred cC
Q psy4449 203 NN 204 (2417)
Q Consensus 203 d~ 204 (2417)
.|
T Consensus 370 PF 371 (608)
T PRK01021 370 PF 371 (608)
T ss_pred cc
Confidence 44
No 197
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=30.47 E-value=2.5e+02 Score=30.24 Aligned_cols=89 Identities=19% Similarity=0.210 Sum_probs=61.5
Q ss_pred hhhHHHHHHHHhHhcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccCCccccccccCCC
Q psy4449 1399 VHILFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAG 1478 (2417)
Q Consensus 1399 ~~~~~~~~v~~~k~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~~~~~~ 1478 (2417)
+.++..+++..++++|++.-|+|=-. .+..+-..+++......++.|++-..+.+.
T Consensus 12 i~~~l~~~i~~l~~~~~~P~Laii~v------------g~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~------------ 67 (117)
T PF00763_consen 12 IKEELKEEIEKLKEKGITPKLAIILV------------GDDPASISYVRSKQKAAEKLGIEFELIELP------------ 67 (117)
T ss_dssp HHHHHHHHHHHHHHCT---EEEEEEE------------S--HHHHHHHHHHHHHHHHHT-EEEEEEE-------------
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEec------------CCChhHHHHHHHHHHHHHHcCCceEEEECC------------
Confidence 44567788899999987666554321 233456889999999999999888887774
Q ss_pred CCChhhHHHHHHHHHHHhcCCCceeEEEeecCC
Q psy4449 1479 PDSDKESFGLFVRELHQAFKPHGLLLSAAVSPS 1511 (2417)
Q Consensus 1479 ~~~d~~~~~~fv~eL~~~l~~~~~~ls~av~p~ 1511 (2417)
.....+.+.+.|++|.+.=.=+|.++-..+|+.
T Consensus 68 ~~~~~~el~~~i~~lN~D~~V~GIlvq~PLP~~ 100 (117)
T PF00763_consen 68 EDISEEELLELIEKLNEDPSVHGILVQLPLPKH 100 (117)
T ss_dssp TTSSHHHHHHHHHHHHH-TT-SEEEEESSSSTT
T ss_pred CCcCHHHHHHHHHHHhCCCCCCEEEEcCCCCCC
Confidence 245677899999999888777898888777654
No 198
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=30.13 E-value=1.1e+02 Score=41.26 Aligned_cols=122 Identities=16% Similarity=0.242 Sum_probs=69.7
Q ss_pred hccccCCCceEEEEe--------------cccccccccChHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCCCC----
Q psy4449 78 GLKEANPELKVYLAV--------------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDD---- 139 (2417)
Q Consensus 78 ~LK~~~P~lkvlLsV--------------Gg~f~~~~~~~~~R~~fi~siv~~l~~~~fDGidl~W~~p~~~~~~~---- 139 (2417)
..++.+|+||++.|- |+....-...+.-++.+++=.++||++|.--||+|.=--+++++...
T Consensus 161 ~a~~~~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~ 240 (496)
T PF02055_consen 161 EALAINPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPN 240 (496)
T ss_dssp HHHHHHTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT
T ss_pred HHHHhCCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCC
Confidence 345678999999996 21222212234677899999999999999999999776676666421
Q ss_pred ---chhhhhhhhHHHHHHHHHH-HHHHhhcCCc--EEEEEecCc-ccccccc----cCHhhhccccceEEEEec
Q psy4449 140 ---DDLESIANERSDFSTFIQE-LSSTLRRNNY--QLTLTSPGV-IDRKTSL----VDISVVAPLVDLILLKSF 202 (2417)
Q Consensus 140 ---~~~~~~~~~r~~f~~ll~e-L~~~l~~~~~--~Lsv~v~p~-~~~~~~~----yD~~~l~~~vD~v~l~~y 202 (2417)
....-.++ ....||++ |+-+|++.++ .+-+.+-.+ ....... ++-++.+++||-|-++-|
T Consensus 241 ~~~~s~~~t~~---~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~~A~~yv~GiA~HwY 311 (496)
T PF02055_consen 241 YPWPSMGWTPE---EQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILNDPEAAKYVDGIAFHWY 311 (496)
T ss_dssp -SSC--B--HH---HHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEET
T ss_pred CCCCcCCCCHH---HHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcChhhHhheeEEEEECC
Confidence 01111122 34567765 9999998866 333323222 1111111 111445567777776666
No 199
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=29.91 E-value=31 Score=36.51 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=17.0
Q ss_pred HHHHHHhCCCCcceEeec-ccchhhh
Q psy4449 1569 MNYWMKKGAPSRKLVMGV-HPLLSTI 1593 (2417)
Q Consensus 1569 v~~~~~~g~p~~Kl~~G~-~p~yg~~ 1593 (2417)
.+.++++|||++.||||+ ||...++
T Consensus 80 a~eLve~GVpk~dIVLgF~~P~~R~~ 105 (111)
T PF08869_consen 80 AEELVEAGVPKEDIVLGFHPPEVRQY 105 (111)
T ss_dssp HHHHHHTT--GGGEEETTS-GGGGCC
T ss_pred HHHHHHcCCCHHHEEEccCCcccccc
Confidence 567889999999999999 4444443
No 200
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=29.70 E-value=2e+02 Score=36.50 Aligned_cols=105 Identities=13% Similarity=0.170 Sum_probs=59.9
Q ss_pred HhHhcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccCCccccccccCCCC--CChhhHH
Q psy4449 1409 TLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGP--DSDKESF 1486 (2417)
Q Consensus 1409 ~~k~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~~~~~~~--~~d~~~~ 1486 (2417)
..+..+..+++.|+|-+. +.|++ ++..+++.|||||||..-.|...-.+...+. -.+.+..
T Consensus 57 ~~~~~~~p~i~ql~g~~~----------------~~~~~-aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~ 119 (319)
T TIGR00737 57 DIAEDETPISVQLFGSDP----------------DTMAE-AAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLI 119 (319)
T ss_pred hcCCccceEEEEEeCCCH----------------HHHHH-HHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHH
Confidence 334556788899988431 33443 4446678899999999887743222222232 2456777
Q ss_pred HHHHHHHHHhcCCCceeEEEeecCChhhh-ccccch-hhhcc-cCceEEe
Q psy4449 1487 GLFVRELHQAFKPHGLLLSAAVSPSKQVI-NAAYDV-KALSE-SLDWISV 1533 (2417)
Q Consensus 1487 ~~fv~eL~~~l~~~~~~ls~av~p~~~~~-~~~~d~-~~l~~-~vD~i~v 1533 (2417)
.+.|+++|+++. +.|++-+....... ....++ +.|.+ -+|+|.|
T Consensus 120 ~ei~~~vr~~~~---~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~v 166 (319)
T TIGR00737 120 GKIVKAVVDAVD---IPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTL 166 (319)
T ss_pred HHHHHHHHhhcC---CCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEE
Confidence 788888888774 44555543221100 011122 23333 3799987
No 201
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=29.62 E-value=91 Score=34.19 Aligned_cols=59 Identities=20% Similarity=0.138 Sum_probs=38.3
Q ss_pred HHHHHHHHhHhcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCcccc
Q psy4449 1402 LFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDL 1463 (2417)
Q Consensus 1402 ~~~~~v~~~k~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDl 1463 (2417)
+|.-.+..+++.|++|++.|-=-|+ ..+..+--+.+.|+.+.+.|-..++++||.=+|+
T Consensus 37 Dl~l~L~~~k~~g~~~lfVi~PvNg---~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~ 95 (130)
T PF04914_consen 37 DLQLLLDVCKELGIDVLFVIQPVNG---KWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADF 95 (130)
T ss_dssp HHHHHHHHHHHTT-EEEEEE----H---HHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-
T ss_pred HHHHHHHHHHHcCCceEEEecCCcH---HHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 3556778899999999998764332 1223333488999999999999999999966665
No 202
>PRK10785 maltodextrin glucosidase; Provisional
Probab=29.55 E-value=1.6e+02 Score=41.02 Aligned_cols=90 Identities=16% Similarity=0.238 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHhCCCEEEEEEc----CCC----------------CCCC--------------cch---hHh----hcC
Q psy4449 1767 DNKFYEKVTALKKKGVKVTLAIG----GWN----------------DSAG--------------NKY---SRL----VNS 1805 (2417)
Q Consensus 1767 ~~~~~~~i~~lk~~glKvllsIG----Gw~----------------~s~~--------------~~f---s~~----~~~ 1805 (2417)
..+|.+.+.++|++|+||||=+= |.. ...+ ..| ..| ..+
T Consensus 225 ~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~n 304 (598)
T PRK10785 225 DAALLRLRHATQQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQS 304 (598)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCC
Confidence 35688899999999999997652 100 0000 001 001 246
Q ss_pred HHHHHHHHH---HHH-HHHHH-cCCCeEEEeec--CCCCccCCCCCCCcchhhhHHHHHHHHHHhcCC
Q psy4449 1806 QQARSKFIA---HVV-NFILE-HNFDGLDLDWE--YPKCWQVDCKQGPASDKQGFADLIKELRAAFNP 1866 (2417)
Q Consensus 1806 ~~~R~~Fi~---siv-~~l~~-ygfDGiDiDwE--yP~~~~~~~~~~~~~d~~~~~~llkeLr~~l~~ 1866 (2417)
++.|+.+++ +++ .+|++ +|+||+-||-- .|. ......-..|++++|+++++
T Consensus 305 p~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~----------~~~~~~~~~f~~~~~~~vk~ 362 (598)
T PRK10785 305 EEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGE----------GGGARNNLQHVAGITQAAKE 362 (598)
T ss_pred HHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhcc----------ccCccccHHHHHHHHHHHHh
Confidence 888998886 344 47776 89999999953 111 00111234678888887754
No 203
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=29.36 E-value=1.7e+02 Score=36.72 Aligned_cols=88 Identities=7% Similarity=0.113 Sum_probs=53.6
Q ss_pred hhhhhhccccC--CCceEEEEecccccccccChHHHHHHHHHHHHHHHhc--CCCceEEEecCCCCCCCCCchhhhhhhh
Q psy4449 73 YKSFLGLKEAN--PELKVYLAVKSNFVSITSDRESRLNFISSVLEMFDMY--KFDGLDLNVKDPALNDEDDDDLESIANE 148 (2417)
Q Consensus 73 y~~~~~LK~~~--P~lkvlLsVGg~f~~~~~~~~~R~~fi~siv~~l~~~--~fDGidl~W~~p~~~~~~~~~~~~~~~~ 148 (2417)
.+++..+|++. ++..|++||++. . ..|++.+..+.+.. ++|+|+||.--|..... .....+
T Consensus 77 ~~~i~~~~~~~~~~~~pvivsi~g~-~---------~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~-----~~~~~~ 141 (294)
T cd04741 77 LEYIRTISDGLPGSAKPFFISVTGS-A---------EDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGK-----PPPAYD 141 (294)
T ss_pred HHHHHHHhhhccccCCeEEEECCCC-H---------HHHHHHHHHHHhhccccccEEEEECCCCCCCCc-----ccccCC
Confidence 33444444332 457789999654 2 33554444443333 69999999998864221 112235
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEEecCcc
Q psy4449 149 RSDFSTFIQELSSTLRRNNYQLTLTSPGVI 178 (2417)
Q Consensus 149 r~~f~~ll~eL~~~l~~~~~~Lsv~v~p~~ 178 (2417)
.+.+..+++.++++.+ ..|.+=++|..
T Consensus 142 ~~~~~~i~~~v~~~~~---iPv~vKl~p~~ 168 (294)
T cd04741 142 FDATLEYLTAVKAAYS---IPVGVKTPPYT 168 (294)
T ss_pred HHHHHHHHHHHHHhcC---CCEEEEeCCCC
Confidence 5677788888877763 45778788864
No 204
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=29.35 E-value=1.4e+02 Score=39.10 Aligned_cols=63 Identities=17% Similarity=0.271 Sum_probs=42.4
Q ss_pred ccCHHHHHHHHHHHHHHhhhCCcceEEEEecCCCccCCcCCCCCcchh----hhHHHHHHHHHHHhccC
Q psy4449 478 ISSGSNRKKFIKSVLTFLRRFDFAGLHFDWNYPVCWQADCSKQHKADK----GNFVKLIQELKAEFDKH 542 (2417)
Q Consensus 478 ~s~~~~R~~fi~svv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~----~nf~~ll~eLR~~f~~~ 542 (2417)
+++++.|+-+.+.+.++++++|||.|-+|+....... +.....+.. ..+..|+++||+++...
T Consensus 162 ~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~--~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v 228 (394)
T PF02065_consen 162 LSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEA--GSPSLPEGYHRYVLGLYRLLDRLRARFPDV 228 (394)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS---SSTTS-GHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCC--CCCCchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 5788999999999999999999999999998654221 111111222 34556999999998753
No 205
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=29.30 E-value=1.3e+02 Score=37.30 Aligned_cols=82 Identities=15% Similarity=0.219 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhCCCEEEEEEcCCCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcc
Q psy4449 1769 KFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPAS 1848 (2417)
Q Consensus 1769 ~~~~~i~~lk~~glKvllsIGGw~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~ 1848 (2417)
.+.+.++-+|++|++|+|=+--.... .... .++. .+.+.+.+++.|+.||-|||- ..
T Consensus 74 dl~elv~Ya~~KgVgi~lw~~~~~~~---~~~~------~~~~-~~~~f~~~~~~Gv~GvKidF~-------------~~ 130 (273)
T PF10566_consen 74 DLPELVDYAKEKGVGIWLWYHSETGG---NVAN------LEKQ-LDEAFKLYAKWGVKGVKIDFM-------------DR 130 (273)
T ss_dssp -HHHHHHHHHHTT-EEEEEEECCHTT---BHHH------HHCC-HHHHHHHHHHCTEEEEEEE---------------SS
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcch---hhHh------HHHH-HHHHHHHHHHcCCCEEeeCcC-------------CC
Confidence 46778889999999999866321111 0111 2223 378889999999999999997 12
Q ss_pred hhhhHHHHHHHHHHhcCCCCcEEEE
Q psy4449 1849 DKQGFADLIKELRAAFNPHDLLLSA 1873 (2417)
Q Consensus 1849 d~~~~~~llkeLr~~l~~~~~~Ls~ 1873 (2417)
|.+..+++.+++-+.-.+++|+|-.
T Consensus 131 d~Q~~v~~y~~i~~~AA~~~Lmvnf 155 (273)
T PF10566_consen 131 DDQEMVNWYEDILEDAAEYKLMVNF 155 (273)
T ss_dssp TSHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CCHHHHHHHHHHHHHHHHcCcEEEe
Confidence 4555666666655555455555544
No 206
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=29.13 E-value=1.8e+02 Score=38.44 Aligned_cols=91 Identities=11% Similarity=0.131 Sum_probs=55.0
Q ss_pred hhhhccccCCCceEEEEecccccccccChHHHHHHHHHHHHHHHhcCCCceEEEecCCCCCCCCCchhhhhhhhHHHHHH
Q psy4449 75 SFLGLKEANPELKVYLAVKSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFST 154 (2417)
Q Consensus 75 ~~~~LK~~~P~lkvlLsVGg~f~~~~~~~~~R~~fi~siv~~l~~~~fDGidl~W~~p~~~~~~~~~~~~~~~~r~~f~~ 154 (2417)
.+..+++..++..|++||.|.- ++ ..|+ .++..+++.++|+|+||.-.|..-..+ +......++.+.+..
T Consensus 89 ~~~~~~~~~~~~p~i~si~g~~-----~~---~~~~-~~a~~~~~~g~d~ielN~scP~~~~~~-~~g~~~~~~~~~~~~ 158 (420)
T PRK08318 89 EIRRVKRDYPDRALIASIMVEC-----NE---EEWK-EIAPLVEETGADGIELNFGCPHGMSER-GMGSAVGQVPELVEM 158 (420)
T ss_pred HHHHHHhhCCCceEEEEeccCC-----CH---HHHH-HHHHHHHhcCCCEEEEeCCCCCCcccc-CCcccccCCHHHHHH
Confidence 3444555555667889985431 11 2344 455566788999999999998621110 111112356677888
Q ss_pred HHHHHHHHhhcCCcEEEEEecCcc
Q psy4449 155 FIQELSSTLRRNNYQLTLTSPGVI 178 (2417)
Q Consensus 155 ll~eL~~~l~~~~~~Lsv~v~p~~ 178 (2417)
+++.+++..+ ..|+|=++|+.
T Consensus 159 i~~~v~~~~~---~Pv~vKl~p~~ 179 (420)
T PRK08318 159 YTRWVKRGSR---LPVIVKLTPNI 179 (420)
T ss_pred HHHHHHhccC---CcEEEEcCCCc
Confidence 8888877643 45777777754
No 207
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=28.94 E-value=1.2e+02 Score=35.13 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=45.1
Q ss_pred hhhhhhHHHHHHHHhHhcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccCCcccccccc
Q psy4449 1396 LTYVHILFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNC 1475 (2417)
Q Consensus 1396 ~~~~~~~~~~~v~~~k~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~~~ 1475 (2417)
...+|..|...++.+++.|++|=+=. |.... +.+.-++-++.+++.+++ ...-+-||+|.+.
T Consensus 34 ~~~~D~~f~~n~~~a~~aGl~vG~Yh----------f~~~~-~~~~a~~eA~~f~~~~~~-~~~~~~lD~E~~~------ 95 (177)
T cd06523 34 SNYVDLKYKNNIKEFKKRGIPFGVYA----------FARGT-STADAKAEARDFYNRANK-KPTFYVLDVEVTS------ 95 (177)
T ss_pred CcccCHHHHHHHHHHHHcCCCeEEEE----------EeccC-CHHHHHHHHHHHHHHhcC-CCceEEEeeccCC------
Confidence 34577889999999999998772211 12211 222223334444444554 2233789999533
Q ss_pred CCCCCChhhHHHHHHHHHHHh
Q psy4449 1476 DAGPDSDKESFGLFVRELHQA 1496 (2417)
Q Consensus 1476 ~~~~~~d~~~~~~fv~eL~~~ 1496 (2417)
..+-......|+.+++++
T Consensus 96 ---~~~~~~~~~~f~~~v~~~ 113 (177)
T cd06523 96 ---MSDMNAGVQAFISELRRL 113 (177)
T ss_pred ---cchHHHHHHHHHHHHHHc
Confidence 122244466777777654
No 208
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=28.37 E-value=65 Score=32.11 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=34.6
Q ss_pred cCCCCCCCcchhHhhcC-HHHHHHHHHHHHHHHHHcCCCeEEEee
Q psy4449 1789 GGWNDSAGNKYSRLVNS-QQARSKFIAHVVNFILEHNFDGLDLDW 1832 (2417)
Q Consensus 1789 GGw~~s~~~~fs~~~~~-~~~R~~Fi~siv~~l~~ygfDGiDiDw 1832 (2417)
|-|... ..+|-.+..+ +.-|+.+++.|++.+..-.||||-+|=
T Consensus 32 ~~W~~~-~~~~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn 75 (79)
T PF14885_consen 32 SEWPGY-PGHYQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADN 75 (79)
T ss_pred eecCCC-CceeeeccCCcchHHHHHHHHHHHHHhcCccceeeeec
Confidence 557654 3556556666 999999999999999988999999883
No 209
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=28.30 E-value=3e+02 Score=34.68 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=63.1
Q ss_pred hHHHHHHHHhH-hcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHc--CCCccccccCCccccccccCC
Q psy4449 1401 ILFYERVVTLK-KKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY--QFDGLDLDWEYPTCWQVNCDA 1477 (2417)
Q Consensus 1401 ~~~~~~v~~~k-~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~y--gfDGvDlD~E~p~~~~~~~~~ 1477 (2417)
+.+.+++...+ +.+..++++|.|-+ + +.+ ..+++.+++. ++|+|||.+-.|...+. ..
T Consensus 76 ~~~~~~~~~~~~~~~~pl~~qi~g~~-------------~---~~~-~~~a~~~~~~~~~~d~ielN~~cP~~~~~--g~ 136 (300)
T TIGR01037 76 EAFLEELKPVREEFPTPLIASVYGSS-------------V---EEF-AEVAEKLEKAPPYVDAYELNLSCPHVKGG--GI 136 (300)
T ss_pred HHHHHHHHHHhccCCCcEEEEeecCC-------------H---HHH-HHHHHHHHhccCccCEEEEECCCCCCCCC--cc
Confidence 34445555433 34678999998732 1 222 3444555554 49999999987763221 11
Q ss_pred CCCChhhHHHHHHHHHHHhcCCCceeEEEeecCChhhhccccchh-hhc-ccCceEEee
Q psy4449 1478 GPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVK-ALS-ESLDWISVM 1534 (2417)
Q Consensus 1478 ~~~~d~~~~~~fv~eL~~~l~~~~~~ls~av~p~~~~~~~~~d~~-~l~-~~vD~i~vM 1534 (2417)
..-.+.+...++|+++|++. ++.|++-+.+... ...++. .+. .-+|.|.|.
T Consensus 137 ~l~~~~~~~~eiv~~vr~~~---~~pv~vKi~~~~~---~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 137 AIGQDPELSADVVKAVKDKT---DVPVFAKLSPNVT---DITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred ccccCHHHHHHHHHHHHHhc---CCCEEEECCCChh---hHHHHHHHHHHcCCCEEEEE
Confidence 12356778889999999887 3566776665321 111222 222 247888764
No 210
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=28.18 E-value=2.9e+02 Score=34.79 Aligned_cols=87 Identities=11% Similarity=0.165 Sum_probs=55.8
Q ss_pred hHHHHHHHHhHh----cCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHc---CCCccccccCCcccccc
Q psy4449 1401 ILFYERVVTLKK----KGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY---QFDGLDLDWEYPTCWQV 1473 (2417)
Q Consensus 1401 ~~~~~~v~~~k~----~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~y---gfDGvDlD~E~p~~~~~ 1473 (2417)
+.+.+++..+++ .+..|+++|+|- . ..+++.+.. +.+. +.|+|||.+-.|...+
T Consensus 74 ~~~~~~i~~~~~~~~~~~~pvivsi~g~-~----------------~~~~~~~~~-~~~~~~~~ad~ielN~sCPn~~~- 134 (294)
T cd04741 74 DYYLEYIRTISDGLPGSAKPFFISVTGS-A----------------EDIAAMYKK-IAAHQKQFPLAMELNLSCPNVPG- 134 (294)
T ss_pred HHHHHHHHHHhhhccccCCeEEEECCCC-H----------------HHHHHHHHH-HHhhccccccEEEEECCCCCCCC-
Confidence 345556655544 367899999863 1 233333333 3443 6999999999876311
Q ss_pred ccCCCCCChhhHHHHHHHHHHHhcCCCceeEEEeecCC
Q psy4449 1474 NCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPS 1511 (2417)
Q Consensus 1474 ~~~~~~~~d~~~~~~fv~eL~~~l~~~~~~ls~av~p~ 1511 (2417)
......+.+.+.++++.++++.+ +-|++=++|.
T Consensus 135 --~~~~~~~~~~~~~i~~~v~~~~~---iPv~vKl~p~ 167 (294)
T cd04741 135 --KPPPAYDFDATLEYLTAVKAAYS---IPVGVKTPPY 167 (294)
T ss_pred --cccccCCHHHHHHHHHHHHHhcC---CCEEEEeCCC
Confidence 11234578899999999999874 4566777765
No 211
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=28.08 E-value=3e+02 Score=35.16 Aligned_cols=94 Identities=15% Similarity=0.217 Sum_probs=57.7
Q ss_pred HHHHHHHHHhCCCEEEEEEcCCCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcch
Q psy4449 1770 FYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASD 1849 (2417)
Q Consensus 1770 ~~~~i~~lk~~glKvllsIGGw~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d 1849 (2417)
+.++++.++..+..++++|+|..... -.+.-+.|++.+-.+ .. ..|+|+|++--|...+ ....++
T Consensus 117 ~~~~l~~~~~~~~plivsi~g~~~~~---------~~~~~~d~~~~~~~~-~~-~ad~ielN~scP~~~g----~~~~~~ 181 (327)
T cd04738 117 VAKRLKKRRPRGGPLGVNIGKNKDTP---------LEDAVEDYVIGVRKL-GP-YADYLVVNVSSPNTPG----LRDLQG 181 (327)
T ss_pred HHHHHHHhccCCCeEEEEEeCCCCCc---------ccccHHHHHHHHHHH-Hh-hCCEEEEECCCCCCCc----cccccC
Confidence 45556555445788999999854221 112223444433333 33 3899999998776321 222567
Q ss_pred hhhHHHHHHHHHHhcC--CCCcEEEEEECCC
Q psy4449 1850 KQGFADLIKELRAAFN--PHDLLLSAAVSPS 1878 (2417)
Q Consensus 1850 ~~~~~~llkeLr~~l~--~~~~~Ls~av~~~ 1878 (2417)
.+.+..+++++|++.. .+++-|++-+.+.
T Consensus 182 ~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~ 212 (327)
T cd04738 182 KEALRELLTAVKEERNKLGKKVPLLVKIAPD 212 (327)
T ss_pred HHHHHHHHHHHHHHHhhcccCCCeEEEeCCC
Confidence 7888899999999885 2235567777654
No 212
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=27.84 E-value=3.5e+02 Score=34.13 Aligned_cols=109 Identities=20% Similarity=0.257 Sum_probs=63.0
Q ss_pred HHHHHHHhHhc--CCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccCCccccc-cccCCCC
Q psy4449 1403 FYERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQ-VNCDAGP 1479 (2417)
Q Consensus 1403 ~~~~v~~~k~~--g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~-~~~~~~~ 1479 (2417)
+.+++..+++. ...++.+|.|-++ .+.|++ +++.+++.|+|+|||++-.|.... .+.....
T Consensus 86 ~~~~~~~~~~~~~~~p~i~si~G~~~---------------~~~~~~-~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l 149 (299)
T cd02940 86 WLKEIRELKKDFPDKILIASIMCEYN---------------KEDWTE-LAKLVEEAGADALELNFSCPHGMPERGMGAAV 149 (299)
T ss_pred HHHHHHHHHhhCCCCeEEEEecCCCC---------------HHHHHH-HHHHHHhcCCCEEEEECCCCCCCCCCCCchhh
Confidence 33444444443 4678888877311 133443 445667789999999999886311 0101112
Q ss_pred CChhhHHHHHHHHHHHhcCCCceeEEEeecCChhhhccccch-h-hhcccCceEEe
Q psy4449 1480 DSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDV-K-ALSESLDWISV 1533 (2417)
Q Consensus 1480 ~~d~~~~~~fv~eL~~~l~~~~~~ls~av~p~~~~~~~~~d~-~-~l~~~vD~i~v 1533 (2417)
..+.+.+.++|+.+++..+ +-|++=++|..... .++ . ....-+|.|.+
T Consensus 150 ~~~~~~~~~iv~~v~~~~~---~Pv~vKl~~~~~~~---~~~a~~~~~~Gadgi~~ 199 (299)
T cd02940 150 GQDPELVEEICRWVREAVK---IPVIAKLTPNITDI---REIARAAKEGGADGVSA 199 (299)
T ss_pred ccCHHHHHHHHHHHHHhcC---CCeEEECCCCchhH---HHHHHHHHHcCCCEEEE
Confidence 3678889999999998773 44566666532211 112 1 12235888876
No 213
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=27.75 E-value=2.5e+02 Score=36.16 Aligned_cols=117 Identities=15% Similarity=0.217 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhCCCEEEEEEcCCCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcc
Q psy4449 1769 KFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPAS 1848 (2417)
Q Consensus 1769 ~~~~~i~~lk~~glKvllsIGGw~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~ 1848 (2417)
.+.+++..++ .++.|++||+|-..+. ....-+.|++.+-.+ .. +.|+|+|++--|... +....+
T Consensus 126 ~~~~~l~~~~-~~~pvivsI~~~~~~~---------~~~~~~d~~~~~~~~-~~-~ad~lelN~scP~~~----g~~~~~ 189 (344)
T PRK05286 126 ALAERLKKAY-RGIPLGINIGKNKDTP---------LEDAVDDYLICLEKL-YP-YADYFTVNISSPNTP----GLRDLQ 189 (344)
T ss_pred HHHHHHHHhc-CCCcEEEEEecCCCCC---------cccCHHHHHHHHHHH-Hh-hCCEEEEEccCCCCC----Cccccc
Confidence 3455666655 6788999998853210 111223444444433 33 499999999888632 122356
Q ss_pred hhhhHHHHHHHHHHhcCC--CCcEEEEEECCChhhhcccCCcc-cccc-CcceEEEEe
Q psy4449 1849 DKQGFADLIKELRAAFNP--HDLLLSAAVSPSKAVIDNAYDIP-VMSE-NLDWISVMT 1902 (2417)
Q Consensus 1849 d~~~~~~llkeLr~~l~~--~~~~Ls~av~~~~~~~~~~yd~~-~l~~-~vD~i~vMt 1902 (2417)
+.+.+..+++++|++.+. .++-|.+-+.+.... +..-++. .+.+ -+|.|.+..
T Consensus 190 ~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~-~~~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 190 YGEALDELLAALKEAQAELHGYVPLLVKIAPDLSD-EELDDIADLALEHGIDGVIATN 246 (344)
T ss_pred CHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCH-HHHHHHHHHHHHhCCcEEEEeC
Confidence 778888999999998852 125677777654221 0001111 1122 378888754
No 214
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=27.61 E-value=1.3e+02 Score=41.93 Aligned_cols=66 Identities=27% Similarity=0.419 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhCCCEEEEEE-------c---CCCCC----CCc---------ch--------hHhhcCHHHHHHHHHHH
Q psy4449 1768 NKFYEKVTALKKKGVKVTLAI-------G---GWNDS----AGN---------KY--------SRLVNSQQARSKFIAHV 1816 (2417)
Q Consensus 1768 ~~~~~~i~~lk~~glKvllsI-------G---Gw~~s----~~~---------~f--------s~~~~~~~~R~~Fi~si 1816 (2417)
.+|...|++||++|+.|||=| | |-+.+ ... .| .--.+.+..|+-.+++|
T Consensus 265 ~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivDsL 344 (697)
T COG1523 265 KEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVDSL 344 (697)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHHHH
Confidence 578899999999999999877 1 11100 000 01 11233488899999999
Q ss_pred HHHHHHcCCCeEEEeec
Q psy4449 1817 VNFILEHNFDGLDLDWE 1833 (2417)
Q Consensus 1817 v~~l~~ygfDGiDiDwE 1833 (2417)
.=|+++|++||+-||.-
T Consensus 345 rYWv~e~hVDGFRFDLa 361 (697)
T COG1523 345 RYWVEEYHVDGFRFDLA 361 (697)
T ss_pred HHHHHHhCCCceeecch
Confidence 99999999999999987
No 215
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=27.19 E-value=3.8e+02 Score=35.54 Aligned_cols=79 Identities=11% Similarity=0.212 Sum_probs=50.6
Q ss_pred CCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccCCcccc-ccccCCCCCChhhHHHHHHHH
Q psy4449 1414 GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCW-QVNCDAGPDSDKESFGLFVRE 1492 (2417)
Q Consensus 1414 g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~-~~~~~~~~~~d~~~~~~fv~e 1492 (2417)
...|+++|.|-.+ + +.| ..++..+++.|+|+|||++-.|..- ..+.......+.+.+.++|++
T Consensus 99 ~~p~i~si~g~~~------------~---~~~-~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~ 162 (420)
T PRK08318 99 DRALIASIMVECN------------E---EEW-KEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRW 162 (420)
T ss_pred CceEEEEeccCCC------------H---HHH-HHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHH
Confidence 4668899987311 1 223 3455566778999999999988611 011111223678899999999
Q ss_pred HHHhcCCCceeEEEeecCC
Q psy4449 1493 LHQAFKPHGLLLSAAVSPS 1511 (2417)
Q Consensus 1493 L~~~l~~~~~~ls~av~p~ 1511 (2417)
+++..+ +-|++=++|.
T Consensus 163 v~~~~~---~Pv~vKl~p~ 178 (420)
T PRK08318 163 VKRGSR---LPVIVKLTPN 178 (420)
T ss_pred HHhccC---CcEEEEcCCC
Confidence 998863 4456666653
No 216
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=27.13 E-value=1.4e+02 Score=36.39 Aligned_cols=111 Identities=14% Similarity=0.188 Sum_probs=61.1
Q ss_pred HHHHHHHHhCCCEEE--EEEcCCCCCC----------C------------cchhHhhcCHHHHHHHHHHHHHHHHHcCCC
Q psy4449 1771 YEKVTALKKKGVKVT--LAIGGWNDSA----------G------------NKYSRLVNSQQARSKFIAHVVNFILEHNFD 1826 (2417)
Q Consensus 1771 ~~~i~~lk~~glKvl--lsIGGw~~s~----------~------------~~fs~~~~~~~~R~~Fi~siv~~l~~ygfD 1826 (2417)
.+.++.+++.|+|++ ||||-...-- . ..|..-.=+++- +..+.+-.+-|.+.|||
T Consensus 63 ~eelr~~~~gg~~pIAYlsIg~ae~yR~Ywd~~w~~~~p~wLg~edP~W~Gny~VkYW~~eW-kdii~~~l~rL~d~Gfd 141 (300)
T COG2342 63 IEELRTKADGGVKPIAYLSIGEAESYRFYWDKYWLTGRPDWLGEEDPEWPGNYAVKYWEPEW-KDIIRSYLDRLIDQGFD 141 (300)
T ss_pred HHHHHHHhcCCeeEEEEEechhhhhhhhHhhhhhhcCCcccccCCCCCCCCCceeeccCHHH-HHHHHHHHHHHHHccCc
Confidence 567888888888877 8898422100 0 000000012222 34455677778888999
Q ss_pred eEEEeecCCC-CccCCCCCCCcchhhhHHHHHHHHHHhcCCCCcEEEEEECCChhhh
Q psy4449 1827 GLDLDWEYPK-CWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVI 1882 (2417)
Q Consensus 1827 GiDiDwEyP~-~~~~~~~~~~~~d~~~~~~llkeLr~~l~~~~~~Ls~av~~~~~~~ 1882 (2417)
||-||+-=+- -+.-..+.........+..|+.+|++..+..+-++.+.+..+...+
T Consensus 142 GvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi~qng~~l~ 198 (300)
T COG2342 142 GVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANPLFRVIPQNGAELF 198 (300)
T ss_pred eEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCCcEEEEecccHhhc
Confidence 9999973211 0011111223445566778888888777665444555555444443
No 217
>PLN02361 alpha-amylase
Probab=26.90 E-value=1.9e+02 Score=38.06 Aligned_cols=66 Identities=18% Similarity=0.496 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHhCCCEEEEEE------c------C-----------CCC-------------CCCcchhHh----hcCH
Q psy4449 1767 DNKFYEKVTALKKKGVKVTLAI------G------G-----------WND-------------SAGNKYSRL----VNSQ 1806 (2417)
Q Consensus 1767 ~~~~~~~i~~lk~~glKvllsI------G------G-----------w~~-------------s~~~~fs~~----~~~~ 1806 (2417)
..+|.+.|.++|++|+|||+=| | | |.. ..+..|..+ ..++
T Consensus 75 ~~el~~li~~~h~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np 154 (401)
T PLN02361 75 EHLLKSLLRKMKQYNVRAMADIVINHRVGTTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQH 154 (401)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEccccccCCCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCH
Confidence 3568889999999999999754 1 1 000 000001111 1357
Q ss_pred HHHHHHHHHHHHHHH-HcCCCeEEEeec
Q psy4449 1807 QARSKFIAHVVNFIL-EHNFDGLDLDWE 1833 (2417)
Q Consensus 1807 ~~R~~Fi~siv~~l~-~ygfDGiDiDwE 1833 (2417)
.-|+.+++-+ ++|+ +.||||+-||.-
T Consensus 155 ~Vr~~l~~~~-~wl~~~~GiDGfRlDav 181 (401)
T PLN02361 155 FVRKDIIGWL-IWLRNDVGFQDFRFDFA 181 (401)
T ss_pred HHHHHHHHHH-HHHHhcCCCCEEEEecc
Confidence 7788777766 5665 599999999965
No 218
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=26.72 E-value=57 Score=32.50 Aligned_cols=43 Identities=28% Similarity=0.415 Sum_probs=33.9
Q ss_pred ccCCCcCCCchhhhhcC-HHHHHHHHHHHHHHHHHcCCCcccccc
Q psy4449 1422 GGWNDSLGGKYSRLVNS-ATARQRFIEHVVKFLLKYQFDGLDLDW 1465 (2417)
Q Consensus 1422 ggw~~~~~~~~~~~~~~-~~~r~~fi~~iv~~l~~ygfDGvDlD~ 1465 (2417)
|-|... ...+-..+.+ +.-|+.+++.+++.+..-.||||-+|=
T Consensus 32 ~~W~~~-~~~~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn 75 (79)
T PF14885_consen 32 SEWPGY-PGHYQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADN 75 (79)
T ss_pred eecCCC-CceeeeccCCcchHHHHHHHHHHHHHhcCccceeeeec
Confidence 667754 3445555555 999999999999999988999998883
No 219
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=26.58 E-value=5.1e+02 Score=29.75 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCEEEEEEcCCCCCCCcchhHhhcCHHHHH----HHHHHHHHHHHHc-CCCeEEEeecCC
Q psy4449 1770 FYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARS----KFIAHVVNFILEH-NFDGLDLDWEYP 1835 (2417)
Q Consensus 1770 ~~~~i~~lk~~glKvllsIGGw~~s~~~~fs~~~~~~~~R~----~Fi~siv~~l~~y-gfDGiDiDwEyP 1835 (2417)
+-..+.++.+.|+||+++++-+. ..|.. .+.+... ..++.+.+.-..| .|.|--|-.|.-
T Consensus 67 l~~~L~~A~~~Gmkv~~Gl~~~~----~~w~~--~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 67 LEMILDAADKYGMKVFVGLYFDP----DYWDQ--GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred HHHHHHHHHHcCCEEEEeCCCCc----hhhhc--cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 34556777788999999998531 22331 4444443 3444444422222 399999999943
No 220
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=25.72 E-value=1.3e+02 Score=41.25 Aligned_cols=64 Identities=19% Similarity=0.331 Sum_probs=45.3
Q ss_pred hHHHHHHHHhHhcCCEEEEEe-cc-----------CCCcC-----------CCchhhh---hcCHHHHHHHHHHHHHHHH
Q psy4449 1401 ILFYERVVTLKKKGVKVSLAI-GG-----------WNDSL-----------GGKYSRL---VNSATARQRFIEHVVKFLL 1454 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~g~Kv~~si-gg-----------w~~~~-----------~~~~~~~---~~~~~~r~~fi~~iv~~l~ 1454 (2417)
++|.+.|.+++++||-|||=+ -| ..... ...+... ....+.|.-|+.++.-.|+
T Consensus 214 edfk~fVD~aH~~GIgViLD~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~ 293 (628)
T COG0296 214 EDFKALVDAAHQAGIGVILDWVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLE 293 (628)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHH
Confidence 678899999999999999921 11 11000 0011111 1256789999999999999
Q ss_pred HcCCCccccc
Q psy4449 1455 KYQFDGLDLD 1464 (2417)
Q Consensus 1455 ~ygfDGvDlD 1464 (2417)
+|++|||-+|
T Consensus 294 ~yHiDGlRvD 303 (628)
T COG0296 294 EYHIDGLRVD 303 (628)
T ss_pred HhCCcceeee
Confidence 9999999888
No 221
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=25.54 E-value=1.8e+02 Score=37.69 Aligned_cols=99 Identities=14% Similarity=0.191 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEEec---------CCCCCCCCCchhhhhhhhHHHHH-HHHHHHHHHhhcCCcEEEEE
Q psy4449 104 ESRLNFISSVLEMFDMYKFDGLDLNVK---------DPALNDEDDDDLESIANERSDFS-TFIQELSSTLRRNNYQLTLT 173 (2417)
Q Consensus 104 ~~R~~fi~siv~~l~~~~fDGidl~W~---------~p~~~~~~~~~~~~~~~~r~~f~-~ll~eL~~~l~~~~~~Lsv~ 173 (2417)
.-.+.|++.+.. .++-|||||+|+=- .|..+++ .|.-+++-|.|-.|. ..|+.+|++.... +.|.+-
T Consensus 146 ~ii~~f~~AA~r-A~~AGFDgVEIH~AhGYLi~qFlsp~tN~R-tD~YGGSlENR~Rf~~EVv~aVr~~vg~~-~~vg~R 222 (363)
T COG1902 146 EVIEDFARAARR-AKEAGFDGVEIHGAHGYLLSQFLSPLTNKR-TDEYGGSLENRARFLLEVVDAVREAVGAD-FPVGVR 222 (363)
T ss_pred HHHHHHHHHHHH-HHHcCCCEEEEeeccchHHHHhcCCccCCC-CCccCCcHHHHHHHHHHHHHHHHHHhCCC-ceEEEE
Confidence 344567665554 45599999999533 3655554 344456667675554 3444555555543 568888
Q ss_pred ecCcccccccccCH-------hhhccc--cceEEEEeccCC
Q psy4449 174 SPGVIDRKTSLVDI-------SVVAPL--VDLILLKSFNND 205 (2417)
Q Consensus 174 v~p~~~~~~~~yD~-------~~l~~~--vD~v~l~~yd~~ 205 (2417)
+++........+++ ..|.+. +|++.+.....+
T Consensus 223 ls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~ 263 (363)
T COG1902 223 LSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYE 263 (363)
T ss_pred ECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeeccccc
Confidence 88865412224432 344443 699988876554
No 222
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=25.54 E-value=9.1e+02 Score=31.69 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=41.5
Q ss_pred HHHHHHHhHhcCCEEEEEecc--CCCcCCCchhh-------hhcCHHHHHHH---HHHHHHHHHHcCCCccccccCCcc
Q psy4449 1403 FYERVVTLKKKGVKVSLAIGG--WNDSLGGKYSR-------LVNSATARQRF---IEHVVKFLLKYQFDGLDLDWEYPT 1469 (2417)
Q Consensus 1403 ~~~~v~~~k~~g~Kv~~sigg--w~~~~~~~~~~-------~~~~~~~r~~f---i~~iv~~l~~ygfDGvDlD~E~p~ 1469 (2417)
..+.+.+++++|+|+-+-... |... .|.. -...+.-++-+ ..+|.++|.+||-|.|=+|+.++.
T Consensus 130 v~el~~A~rk~Glk~G~Y~S~~DW~~p---~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~ 205 (384)
T smart00812 130 VGELADAVRKRGLKFGLYHSLFDWFNP---LYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWEA 205 (384)
T ss_pred HHHHHHHHHHcCCeEEEEcCHHHhCCC---ccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence 456667889999999885554 5432 1111 01112222333 699999999999999988988653
No 223
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=25.46 E-value=1.3e+03 Score=30.33 Aligned_cols=66 Identities=17% Similarity=0.121 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCCEEEEEEcCCCCCCCcchhHh-------hcCHHHHHH---HHHHHHHHHHHcCCCeEEEeecCCC
Q psy4449 1770 FYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRL-------VNSQQARSK---FIAHVVNFILEHNFDGLDLDWEYPK 1836 (2417)
Q Consensus 1770 ~~~~i~~lk~~glKvllsIGGw~~s~~~~fs~~-------~~~~~~R~~---Fi~siv~~l~~ygfDGiDiDwEyP~ 1836 (2417)
+.+...++|++|+|+-|-...+.... ..|... ...+...+- +..+|.++|.+||-|.|=+|+.++.
T Consensus 130 v~el~~A~rk~Glk~G~Y~S~~DW~~-p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~ 205 (384)
T smart00812 130 VGELADAVRKRGLKFGLYHSLFDWFN-PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWEA 205 (384)
T ss_pred HHHHHHHHHHcCCeEEEEcCHHHhCC-CccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence 34556788889999998776533211 112110 011122222 2689999999999999999988754
No 224
>PF01994 Trm56: tRNA ribose 2'-O-methyltransferase, aTrm56; InterPro: IPR002845 This entry represents tRNA ribose 2'-O-methyltransferase aTrm56, which specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs. The crystal structure of Pyrococcus horikoshii aTrm56 complexed with S-adenosyl-L-methionine has been determined to 2.48 A resolution. aTrm56 consists of the SPOUT domain, which contains the characteristic deep trefoil knot, and a unique C-terminal beta-hairpin []. A conserved cytidine at position 56 of tRNA contributes to the maintenance of the L-shaped tertiary structure. aTrm56 catalyzes the 2'-O-methylation of the cytidine residue in archaeal tRNA, using S-adenosyl-L-methionine. Biochemical assays showed that aTrm56 forms a dimer and prefers the L-shaped tRNA to the lambda form as its substrate [, ].; GO: 0008175 tRNA methyltransferase activity, 0002128 tRNA nucleoside ribose methylation, 0005737 cytoplasm; PDB: 2YY8_A 2O3A_B.
Probab=25.19 E-value=70 Score=34.02 Aligned_cols=55 Identities=18% Similarity=0.354 Sum_probs=34.3
Q ss_pred HHHHHHhhcCcEEEEEEcc------------ccCC-CCccchhccCCHHHHHHHHHHHHHHHHHhCCCccccccccCcch
Q psy4449 2251 EKITKFNERGIQVILAIGG------------WSDS-RSDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGLEFAWEYPKCW 2317 (2417)
Q Consensus 2251 ~~~~~~k~~~~k~~l~~gg------------w~~~-~~~~~~~~~~~~~~r~~f~~~~~~~~~~~~fdgld~~we~p~~~ 2317 (2417)
+.+-++|+++-++|+-||+ ||-+ +.+++|+.++ +.-||.. =|+|..|+.||+...
T Consensus 39 dvi~~Ir~~~~~~lvVVGaeKVP~evYe~ADyNVaVgnQPHSEVAA-----------LAvFLDr-l~~G~el~~~f~~a~ 106 (120)
T PF01994_consen 39 DVIDEIRESCKDLLVVVGAEKVPGEVYELADYNVAVGNQPHSEVAA-----------LAVFLDR-LFEGKELDREFEDAK 106 (120)
T ss_dssp HCHHHHHHCTSEEEEEE-SS---CCHHHHSSEEEESSSS---HHHH-----------HHHHHHH-HCTTGCCC---TT-S
T ss_pred HHHHHHhccCCCEEEEECCCcCCHHHHhhCCcceeeCCCChHHHHH-----------HHHHHHH-hcCCcchhhccCCCc
Confidence 4456788888999999998 7777 7889998762 2233433 389999999998764
No 225
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=25.15 E-value=4.5e+02 Score=36.14 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEeecC--CCCcc-CCCC----CCCcchhhhHHHHHHHHHHhcCC-CCcEEEEEE
Q psy4449 1805 SQQARSKFIAHVVNFILEHNFDGLDLDWEY--PKCWQ-VDCK----QGPASDKQGFADLIKELRAAFNP-HDLLLSAAV 1875 (2417)
Q Consensus 1805 ~~~~R~~Fi~siv~~l~~ygfDGiDiDwEy--P~~~~-~~~~----~~~~~d~~~~~~llkeLr~~l~~-~~~~Ls~av 1875 (2417)
+++.|+.+++ ++.+..+.|+||+-||--. +.... .+.. ...-.+......|++++|+.++. .+..|..-+
T Consensus 168 np~v~~~i~~-~~~~W~~~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~lvgE~ 245 (543)
T TIGR02403 168 NPEVREELKD-VVNFWRDKGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFGDNDSVTVGEM 245 (543)
T ss_pred CHHHHHHHHH-HHHHHHHcCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhccCCeEEEEEe
Confidence 6777776666 4555556899999999321 10000 0000 00012345677899999987754 233444333
No 226
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=24.88 E-value=1.5e+02 Score=38.04 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=47.9
Q ss_pred HHhHhcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccCCcccccc--ccCCCCCChhhH
Q psy4449 1408 VTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQV--NCDAGPDSDKES 1485 (2417)
Q Consensus 1408 ~~~k~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~--~~~~~~~~d~~~ 1485 (2417)
.........+++.|+|-+ + +.|++ ++..+++.|||||||..-.|..... ++....-.+.+.
T Consensus 58 l~~~~~e~p~~vQl~g~~-------------p---~~~~~-aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~ 120 (333)
T PRK11815 58 LAFDPEEHPVALQLGGSD-------------P---ADLAE-AAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPEL 120 (333)
T ss_pred hccCCCCCcEEEEEeCCC-------------H---HHHHH-HHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHH
Confidence 333455678999998843 1 33444 4456678999999999988764222 112222356677
Q ss_pred HHHHHHHHHHhc
Q psy4449 1486 FGLFVRELHQAF 1497 (2417)
Q Consensus 1486 ~~~fv~eL~~~l 1497 (2417)
..+.|+++++++
T Consensus 121 ~~eiv~avr~~v 132 (333)
T PRK11815 121 VADCVKAMKDAV 132 (333)
T ss_pred HHHHHHHHHHHc
Confidence 788888888877
No 227
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.82 E-value=2.2e+02 Score=36.29 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=62.1
Q ss_pred CccchhccCCHHHHHHHHHHHHHHHHHhCCCccccccccCcchh------------c---------------cccccCCC
Q psy4449 2275 SDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGLEFAWEYPKCWQ------------T---------------CSTVKSHE 2327 (2417)
Q Consensus 2275 ~~~~~~~~~~~~~r~~f~~~~~~~~~~~~fdgld~~we~p~~~~------------~---------------c~~~~~~~ 2327 (2417)
...+-.+. +|++|+=|.+. ++.+.+.|+||+=+|+-=|.... . ....+.+.
T Consensus 128 ~~~~~Dft-np~a~~w~~~~-~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~g~~~~~hN~y~~~~~~~~~e~~~~~~~~~ 205 (317)
T cd06598 128 NTGLIDWF-DPAAQAWFHDN-YKKLIDQGVTGWWGDLGEPEVHPPDMCHHKGKAAEVHNIYGHLWAKSIYEGYQQNYPNE 205 (317)
T ss_pred CccccCCC-CHHHHHHHHHH-HHHhhhCCccEEEecCCCccccCCccccCCCcHhHHhhHHHHHHHHHHHHHHHHhcCCC
Confidence 34566665 89999888654 55568899999999984332110 0 11111110
Q ss_pred cEEEEcCCCCcc--cee---ecCCeeeEecchHHHHHHHHHhhhcCCCceeeeecccccccc
Q psy4449 2328 WTVVRDSLGARG--PYA---YNGKLWLSYDDTRDIRRKCKSIKQDGLGGAMVWSIDLDDFQN 2384 (2417)
Q Consensus 2328 ~~~~~~~~~~~~--~~~---~~~~~w~~~~~~~~~~~k~~~~~~~~~~g~~~~~~~~dd~~~ 2384 (2417)
=-++.-.-|-.| =|+ --||+=.+++ .|+.-..-+..++|-|...|.-|+--|.|
T Consensus 206 r~~~~~Rs~~~Gsqry~~~~WsGD~~s~W~---~L~~~i~~~l~~~l~G~~~~g~DIGGf~~ 264 (317)
T cd06598 206 RPFILMRAGFAGSQRYGVIPWSGDVGRTWD---GLKSQPNAALQMSMSGIDYYHSDIGGFAG 264 (317)
T ss_pred CeEEEEecCcCccccCcCCccCCCCcCCHH---HHHHHHHHHHhhhccCCcccCCCcCCcCC
Confidence 012222222111 232 2355544454 57777788899999999999999876665
No 228
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=24.75 E-value=2.4e+02 Score=32.99 Aligned_cols=61 Identities=23% Similarity=0.295 Sum_probs=34.2
Q ss_pred hhhhHHHHHHHHhHhcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCC-ccccccCCcc
Q psy4449 1398 YVHILFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFD-GLDLDWEYPT 1469 (2417)
Q Consensus 1398 ~~~~~~~~~v~~~k~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfD-GvDlD~E~p~ 1469 (2417)
.+|..|.+.+..+++.|+++ |..- |... .+...-++=++..++.++.++.+ -+-||+|...
T Consensus 39 ~~D~~~~~~~~~A~~aGl~~----G~YH------f~~~-~~~~~a~~qA~~f~~~~~~~~~~~~~~lD~E~~~ 100 (191)
T cd06414 39 QEDKYFEENIKGAKAAGIPV----GVYF------YSYA-VTVAEAREEAEFVLRLIKGYKLSYPVYYDLEDET 100 (191)
T ss_pred ccCHHHHHHHHHHHHCCCce----EEEE------EEEe-CCHHHHHHHHHHHHHHhhccCCCCCeEEEeecCC
Confidence 46788899999999999875 3211 1111 11111122244445556666543 3568999643
No 229
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.56 E-value=1.7e+02 Score=37.17 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=44.7
Q ss_pred HHHHHHHHHhCCCEEEEEEc----------------CC----CCCC----------CcchhHhhcCHHHHHHHHHHHHHH
Q psy4449 1770 FYEKVTALKKKGVKVTLAIG----------------GW----NDSA----------GNKYSRLVNSQQARSKFIAHVVNF 1819 (2417)
Q Consensus 1770 ~~~~i~~lk~~glKvllsIG----------------Gw----~~s~----------~~~fs~~~~~~~~R~~Fi~siv~~ 1819 (2417)
..+.|..||++|+|+++.|- |+ ..+. ...| -=+.+++.|+-|.+.+.+.
T Consensus 75 p~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~-~Dftnp~a~~ww~~~~~~~ 153 (317)
T cd06599 75 PAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSF-VDFTNPEGREWWKEGVKEA 153 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEe-ecCCChHHHHHHHHHHHHH
Confidence 45678889999999998662 10 0000 0001 1135889999898888899
Q ss_pred HHHcCCCeEEEeecCC
Q psy4449 1820 ILEHNFDGLDLDWEYP 1835 (2417)
Q Consensus 1820 l~~ygfDGiDiDwEyP 1835 (2417)
+.+.|+||+=+|+--|
T Consensus 154 ~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 154 LLDLGIDSTWNDNNEY 169 (317)
T ss_pred HhcCCCcEEEecCCCC
Confidence 9999999999998533
No 230
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=24.51 E-value=4.2e+02 Score=31.01 Aligned_cols=112 Identities=13% Similarity=0.150 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHhCCCEEEEEEcCCCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCC---eEEEeecCCCCccCCCC
Q psy4449 1767 DNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFD---GLDLDWEYPKCWQVDCK 1843 (2417)
Q Consensus 1767 ~~~~~~~i~~lk~~glKvllsIGGw~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfD---GiDiDwEyP~~~~~~~~ 1843 (2417)
+..+...++.+++.|+++ |.. +|....+..+. ++=++..++.+++++++ -+-||+|...
T Consensus 41 D~~~~~n~~~A~~aGl~v----G~Y------hf~~~~~~~~a-~~eA~~f~~~~~~~~~~~~~~~~lD~E~~~------- 102 (192)
T cd06522 41 NPYAASQIANAKAAGLKV----SAY------HYAHYTSAADA-QAEARYFANTAKSLGLSKNTVMVADMEDSS------- 102 (192)
T ss_pred ChHHHHHHHHHHHCCCee----EEE------EEEecCChHHH-HHHHHHHHHHHHHcCCCCCCceEEEeecCC-------
Confidence 456778899999999875 332 23332222222 22223334445777764 2568999543
Q ss_pred CCCcchhhhHHHHHHHHHHhcCCCCcEEEEEECCChhhhcccCCccccccCcceEEEEecc
Q psy4449 1844 QGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYD 1904 (2417)
Q Consensus 1844 ~~~~~d~~~~~~llkeLr~~l~~~~~~Ls~av~~~~~~~~~~yd~~~l~~~vD~i~vMtYD 1904 (2417)
....-......|+++++++-.. ...+ -.....+...++...+.++ -+-|..|.
T Consensus 103 -~~~~~~~~~~~F~~~v~~~g~~---~~~i--Y~~~~~~~~~~~~~~~~~~--~lWiA~Y~ 155 (192)
T cd06522 103 -SSGNATANVNAFWQTMKAAGYK---NTDV--YTSASWLNSRADTSTLGAK--RVWVAQYP 155 (192)
T ss_pred -CcchHHHHHHHHHHHHHHcCCC---CcEE--EccHHHHhcCCchhhcCCC--CEEEEeCC
Confidence 1122334556777777764321 1111 1222233332344455544 46667776
No 231
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=24.50 E-value=1.3e+02 Score=38.24 Aligned_cols=81 Identities=16% Similarity=0.223 Sum_probs=53.3
Q ss_pred hHhcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccCCcccccccc--CCCCCChhhHHH
Q psy4449 1410 LKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNC--DAGPDSDKESFG 1487 (2417)
Q Consensus 1410 ~k~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~~~--~~~~~~d~~~~~ 1487 (2417)
.......+++.|+|-+ + +.|+ .++..++++|||+|||..-.|....... ...--.+.+...
T Consensus 50 ~~~~e~p~~vQl~g~~-------------p---~~~~-~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~ 112 (318)
T TIGR00742 50 FSPEESPVALQLGGSD-------------P---NDLA-KCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVA 112 (318)
T ss_pred cCCCCCcEEEEEccCC-------------H---HHHH-HHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHH
Confidence 3445678888888743 1 2333 3555677799999999998887443321 122236778889
Q ss_pred HHHHHHHHhcCCCceeEEEeecC
Q psy4449 1488 LFVRELHQAFKPHGLLLSAAVSP 1510 (2417)
Q Consensus 1488 ~fv~eL~~~l~~~~~~ls~av~p 1510 (2417)
++|++++++++ .-+|+-+..
T Consensus 113 ~iv~av~~~~~---~PVsvKiR~ 132 (318)
T TIGR00742 113 DCVKAMQEAVN---IPVTVKHRI 132 (318)
T ss_pred HHHHHHHHHhC---CCeEEEEec
Confidence 99999999873 345555543
No 232
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=23.72 E-value=1e+02 Score=42.30 Aligned_cols=117 Identities=19% Similarity=0.208 Sum_probs=49.2
Q ss_pred hhhhc-hhhhhhhccccCCCceEEEEe-------cccccccccChHHHHHHHHHHHHHH-HhcCCCceEEEecCCCCCCC
Q psy4449 67 DVIKG-GYKSFLGLKEANPELKVYLAV-------KSNFVSITSDRESRLNFISSVLEMF-DMYKFDGLDLNVKDPALNDE 137 (2417)
Q Consensus 67 D~~~~-~y~~~~~LK~~~P~lkvlLsV-------Gg~f~~~~~~~~~R~~fi~siv~~l-~~~~fDGidl~W~~p~~~~~ 137 (2417)
+..++ ++.-+...|++||++|+.+-= |..+..-..++.. -+.=+++|| -.+..-|++|||-=+ +.
T Consensus 108 n~~RGye~~L~~eAKkrNP~ikl~~L~W~~PgW~~~g~~~~~~~~~~---~a~Y~~~wl~ga~~~~gl~idYvg~--~N- 181 (669)
T PF02057_consen 108 NYFRGYEWWLMAEAKKRNPNIKLYGLPWGFPGWVGNGWNWPYDNPQL---TAYYVVSWLLGAKKTHGLDIDYVGI--WN- 181 (669)
T ss_dssp -S-SSSHHHHHHHHHHH-TT-EEEEEES-B-GGGGTTSS-TTSSHHH---HHHHHHHHHHHHHHHH-----EE-S---T-
T ss_pred ccccChhhhhHHHHHhhCCCCeEEEeccCCCccccCCCCCcccchhh---hhHHHHHHHHHHHHHhCCCceEech--hh-
Confidence 44432 333344589999999998653 3333221222211 122334555 222233667887744 22
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHhhcCCcE-EEEEecCcccccccccCH---hhhccccceEEEE
Q psy4449 138 DDDDLESIANERSDFSTFIQELSSTLRRNNYQ-LTLTSPGVIDRKTSLVDI---SVVAPLVDLILLK 200 (2417)
Q Consensus 138 ~~~~~~~~~~~r~~f~~ll~eL~~~l~~~~~~-Lsv~v~p~~~~~~~~yD~---~~l~~~vD~v~l~ 200 (2417)
+|.-=...|+.||++|..++|. +-|....... ..-..++ ++|...||.|-.+
T Consensus 182 ----------Er~~~~~~ik~lr~~l~~~gy~~vkiva~D~~~-~~~~~~m~~D~~l~~avdvig~H 237 (669)
T PF02057_consen 182 ----------ERGFDVNYIKWLRKALNSNGYNKVKIVAADNNW-ESISDDMLSDPELRNAVDVIGYH 237 (669)
T ss_dssp ----------TS---HHHHHHHHHHHHHTT-TT-EEEEEEE-S-TTHHHHHHH-HHHHHH--EEEEE
T ss_pred ----------ccCCChhHHHHHHHHHhhccccceEEEEeCCCc-cchhhhhhcCHHHHhcccEeccc
Confidence 1222345678899999998864 4443332221 1111122 6777788877555
No 233
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=23.62 E-value=3e+02 Score=34.96 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=56.8
Q ss_pred hHHHHHHHHhHhc--CCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcC-CCccccccCCccccccccCC
Q psy4449 1401 ILFYERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQ-FDGLDLDWEYPTCWQVNCDA 1477 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~--g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~yg-fDGvDlD~E~p~~~~~~~~~ 1477 (2417)
+.+.+++..+++. ++.|+.+|-|.+. ..|+ .+++.+++.| .|.|+|.+-.|-..+ ..
T Consensus 77 ~~~~~~i~~~~~~~~~~pvI~Si~G~~~----------------~~~~-~~a~~~~~~g~ad~iElN~ScPn~~~---~~ 136 (310)
T PRK02506 77 DYYLDYVLELQKKGPNKPHFLSVVGLSP----------------EETH-TILKKIQASDFNGLVELNLSCPNVPG---KP 136 (310)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEEeCcH----------------HHHH-HHHHHHhhcCCCCEEEEECCCCCCCC---cc
Confidence 4556666666665 5889999987542 2222 3344466788 799999999874211 11
Q ss_pred CCCChhhHHHHHHHHHHHhcCCCceeEEEeecCC
Q psy4449 1478 GPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPS 1511 (2417)
Q Consensus 1478 ~~~~d~~~~~~fv~eL~~~l~~~~~~ls~av~p~ 1511 (2417)
....|.+.+.++|+.++++.+ .-+.+-++|.
T Consensus 137 ~~g~d~~~~~~i~~~v~~~~~---~Pv~vKlsp~ 167 (310)
T PRK02506 137 QIAYDFETTEQILEEVFTYFT---KPLGVKLPPY 167 (310)
T ss_pred ccccCHHHHHHHHHHHHHhcC---CccEEecCCC
Confidence 224567889999999998874 2345555553
No 234
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=23.55 E-value=8.7e+02 Score=31.23 Aligned_cols=133 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred EEEEeEEecCCCcEEccCCCcchhhH---HHHHHHHHHHhCCCEEEEEE---cCCCCCCCcchhHhhcC-----------
Q psy4449 1743 VIYGFAVLDTDQLVIKPHDTWADLDN---KFYEKVTALKKKGVKVTLAI---GGWNDSAGNKYSRLVNS----------- 1805 (2417)
Q Consensus 1743 IiyaFa~i~~~~~~~~~~d~~~d~~~---~~~~~i~~lk~~glKvllsI---GGw~~s~~~~fs~~~~~----------- 1805 (2417)
||-..+.+++.+. ..........+. .+.+.+..+|+.|.|+++-| |.+.............+
T Consensus 53 ii~~~~~v~~~~~-~~~~~~~i~~d~~i~~~k~l~~~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~ 131 (341)
T PF00724_consen 53 IITEATAVSPEGR-GFPGQPGIWDDEQIPGLKKLADAVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKF 131 (341)
T ss_dssp EEEEEEESSGGGS-SSTTSEBSSSHHHHHHHHHHHHHHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTE
T ss_pred EEecccccccccc-cccccchhchhhHHHHHHHHHHHHHhcCccceeeccccccccCcccCCCCccCcccccccCccccc
Q ss_pred -------------HHHHHHHHHHHHHHHHHcCCCeEEEeecC----------CCCccCCCCCCCcchhhhHHH-HHHHHH
Q psy4449 1806 -------------QQARSKFIAHVVNFILEHNFDGLDLDWEY----------PKCWQVDCKQGPASDKQGFAD-LIKELR 1861 (2417)
Q Consensus 1806 -------------~~~R~~Fi~siv~~l~~ygfDGiDiDwEy----------P~~~~~~~~~~~~~d~~~~~~-llkeLr 1861 (2417)
.+-.+.|++.+....+ -|||||+|.--+ -.+...|.-+++.++|..|.. .|+++|
T Consensus 132 ~~~~~~~mt~~eI~~ii~~f~~AA~~A~~-AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr 210 (341)
T PF00724_consen 132 MGYPPREMTEEEIEEIIEDFAQAARRAKE-AGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIR 210 (341)
T ss_dssp TSCEEEE--HHHHHHHHHHHHHHHHHHHH-TT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCeeCCHHHHHHHHHHHHHHHHHHHH-hccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHH
Q ss_pred HhcCCCCcEEEEEECCC
Q psy4449 1862 AAFNPHDLLLSAAVSPS 1878 (2417)
Q Consensus 1862 ~~l~~~~~~Ls~av~~~ 1878 (2417)
+++ ...+.|.+-+++.
T Consensus 211 ~~v-g~d~~v~~Rls~~ 226 (341)
T PF00724_consen 211 EAV-GPDFPVGVRLSPD 226 (341)
T ss_dssp HHH-TGGGEEEEEEETT
T ss_pred HHh-cCCceEEEEEeee
No 235
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=23.18 E-value=57 Score=25.14 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=20.0
Q ss_pred CCeeeEecchHHHHHHHHHhhhcCC
Q psy4449 2345 GKLWLSYDDTRDIRRKCKSIKQDGL 2369 (2417)
Q Consensus 2345 ~~~w~~~~~~~~~~~k~~~~~~~~~ 2369 (2417)
.=++.+++ ++.|+.|++|++++|+
T Consensus 7 ~P~il~~~-~~~l~~~~~~l~~~g~ 30 (31)
T smart00733 7 FPQILGYS-EKKLKPKVEFLKELGF 30 (31)
T ss_pred CcCccccc-HHHhhHHHHHHHHcCC
Confidence 34677888 8899999999998875
No 236
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=23.02 E-value=2.5e+02 Score=33.01 Aligned_cols=79 Identities=16% Similarity=0.240 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEEcCCCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCC---eEEEeecCCCCccCCCCC
Q psy4449 1768 NKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFD---GLDLDWEYPKCWQVDCKQ 1844 (2417)
Q Consensus 1768 ~~~~~~i~~lk~~glKvllsIGGw~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfD---GiDiDwEyP~~~~~~~~~ 1844 (2417)
..+.+.++.+++.|+++ |.. +|.....+....++-++..++.++.+++. =+-||+|... ..
T Consensus 38 ~~~~~n~~~A~~aGl~v----G~Y------hf~~~~~~~~~a~~eA~~f~~~~~~~~l~~~~~~~lDvE~~~------~~ 101 (196)
T cd06415 38 PKASAQVSSAIANGKMT----GGY------HFARFGGSVSQAKYEADYFLNSAQQAGLPKGSYLALDYEQGS------GN 101 (196)
T ss_pred ccHHHHHHHHHHCCCee----EEE------EEEecCCCHHHHHHHHHHHHHHhhhcCCCCCCEEEEEEecCC------CC
Confidence 45778899999999865 322 23332333322333333344455666552 3678999542 11
Q ss_pred CCcchhhhHHHHHHHHHH
Q psy4449 1845 GPASDKQGFADLIKELRA 1862 (2417)
Q Consensus 1845 ~~~~d~~~~~~llkeLr~ 1862 (2417)
........+..||++|++
T Consensus 102 ~~~~~~~~~~~f~~~v~~ 119 (196)
T cd06415 102 SKAANTSAILAFMDTIKD 119 (196)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 111223445667777764
No 237
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=22.64 E-value=1.5e+02 Score=37.67 Aligned_cols=63 Identities=24% Similarity=0.376 Sum_probs=45.9
Q ss_pred HHHHHHHhHhcCCEEEEEeccCCCcCCCc-hhhh----------------------------hcCHHHHHHHHHHHHHHH
Q psy4449 1403 FYERVVTLKKKGVKVSLAIGGWNDSLGGK-YSRL----------------------------VNSATARQRFIEHVVKFL 1453 (2417)
Q Consensus 1403 ~~~~v~~~k~~g~Kv~~siggw~~~~~~~-~~~~----------------------------~~~~~~r~~fi~~iv~~l 1453 (2417)
..+-|..||++|+||++.|--.-...... |.++ +.|+++|+=|.+.+.+++
T Consensus 73 p~~mi~~Lh~~G~~~~~~i~P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 152 (317)
T cd06594 73 LDELIEELKARGIRVLTYINPYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEML 152 (317)
T ss_pred HHHHHHHHHHCCCEEEEEecCceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHh
Confidence 45788899999999999775421000111 1222 136899999999999999
Q ss_pred HHcCCCcccccc
Q psy4449 1454 LKYQFDGLDLDW 1465 (2417)
Q Consensus 1454 ~~ygfDGvDlD~ 1465 (2417)
.++|+||+=+|+
T Consensus 153 ~~~Gvdg~w~D~ 164 (317)
T cd06594 153 LDLGLSGWMADF 164 (317)
T ss_pred hhcCCcEEEecC
Confidence 999999999998
No 238
>KOG1552|consensus
Probab=22.45 E-value=1.2e+02 Score=36.87 Aligned_cols=51 Identities=27% Similarity=0.428 Sum_probs=29.0
Q ss_pred eEEEEeeccCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEeeccccee
Q psy4449 572 FMSLMSYDYHGAWEGITGLVSPLNSRPGEPYPNYNINTALKLIDELGGDKRKIVIGVPFYGQS 634 (2417)
Q Consensus 572 ~i~vMtYD~~g~w~~~tg~~sPL~~~~~~~~~~~~v~~~v~~~~~~G~p~~KLvlGvP~YGr~ 634 (2417)
.+|||+|||.|. ..-.|-.+- ......++.+.+++....-++++|+| |||+
T Consensus 88 n~nv~~~DYSGy-G~S~G~psE-------~n~y~Di~avye~Lr~~~g~~~~Iil----~G~S 138 (258)
T KOG1552|consen 88 NCNVVSYDYSGY-GRSSGKPSE-------RNLYADIKAVYEWLRNRYGSPERIIL----YGQS 138 (258)
T ss_pred cceEEEEecccc-cccCCCccc-------ccchhhHHHHHHHHHhhcCCCceEEE----EEec
Confidence 478999999874 222222222 12233455555555543328888886 7765
No 239
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=22.33 E-value=5.9e+02 Score=30.92 Aligned_cols=106 Identities=10% Similarity=0.042 Sum_probs=63.3
Q ss_pred HHHHHHhHhcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccCCcccccc--ccCCCCCC
Q psy4449 1404 YERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQV--NCDAGPDS 1481 (2417)
Q Consensus 1404 ~~~v~~~k~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~--~~~~~~~~ 1481 (2417)
.+.+.+++ .+.++++.|++-+- +.| ..+...+.+ ++|+|||+.-+|...-. ++...--.
T Consensus 58 ~~e~~~~~-~~~~vivnv~~~~~----------------ee~-~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~ 118 (231)
T TIGR00736 58 IEQIKKAE-SRALVSVNVRFVDL----------------EEA-YDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLK 118 (231)
T ss_pred HHHHHHHh-hcCCEEEEEecCCH----------------HHH-HHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcC
Confidence 34555665 56699999998431 122 223344444 79999999998773222 22222335
Q ss_pred hhhHHHHHHHHHHHhcCCCceeEEEeecCChhhhccccch--hhhcccCceEEe
Q psy4449 1482 DKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDV--KALSESLDWISV 1533 (2417)
Q Consensus 1482 d~~~~~~fv~eL~~~l~~~~~~ls~av~p~~~~~~~~~d~--~~l~~~vD~i~v 1533 (2417)
|.+...++|+.+++. +.-+++=+.+..... .-.++ ......+|+|.|
T Consensus 119 dp~~l~~iv~av~~~----~~PVsvKiR~~~~~~-~~~~~a~~l~~aGad~i~V 167 (231)
T TIGR00736 119 NKELLKEFLTKMKEL----NKPIFVKIRGNCIPL-DELIDALNLVDDGFDGIHV 167 (231)
T ss_pred CHHHHHHHHHHHHcC----CCcEEEEeCCCCCcc-hHHHHHHHHHHcCCCEEEE
Confidence 888899999999832 567777777653211 11112 122347899988
No 240
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=22.23 E-value=1.2e+02 Score=37.50 Aligned_cols=51 Identities=29% Similarity=0.328 Sum_probs=41.1
Q ss_pred HHHHHHHhHhcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccCCcc
Q psy4449 1403 FYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPT 1469 (2417)
Q Consensus 1403 ~~~~v~~~k~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~ 1469 (2417)
..+.|..+|++|+||++.|-- ..|+=|.+.+.+++.++|+||+=+|+--|.
T Consensus 68 p~~~i~~l~~~g~~~~~~~~P----------------~v~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 118 (265)
T cd06589 68 PKSMIDELHDNGVKLVLWIDP----------------YIREWWAEVVKKLLVSLGVDGFWTDMGEPS 118 (265)
T ss_pred HHHHHHHHHHCCCEEEEEeCh----------------hHHHHHHHHHHHhhccCCCCEEeccCCCCC
Confidence 456788899999999998842 117888888888889999999999995455
No 241
>PRK03995 hypothetical protein; Provisional
Probab=22.20 E-value=1.9e+02 Score=35.80 Aligned_cols=97 Identities=18% Similarity=0.354 Sum_probs=57.3
Q ss_pred EeEEecCCCcEEccCCCcchhhH--HHHHHHHHH----HhCCCEEEEEEcCCCCCCCcchhHhhcCH-----------HH
Q psy4449 1746 GFAVLDTDQLVIKPHDTWADLDN--KFYEKVTAL----KKKGVKVTLAIGGWNDSAGNKYSRLVNSQ-----------QA 1808 (2417)
Q Consensus 1746 aFa~i~~~~~~~~~~d~~~d~~~--~~~~~i~~l----k~~glKvllsIGGw~~s~~~~fs~~~~~~-----------~~ 1808 (2417)
.|+.|.... ++|.|-+. -+.+.|..+ .....+++|.|||-... .+|.+++... +.
T Consensus 145 ~FvEIGSte------~eW~d~~a~~~vA~avl~~l~~~~~~~~~~~iGiGGgHYa--pr~T~~~l~~~~~~GHi~pky~l 216 (267)
T PRK03995 145 VFVEIGSTE------EEWKNERAGEILAEAVIEVLDSIEYEKFKPAIGIGGGHYA--PKFTKLALESEYCFGHIIPKYAL 216 (267)
T ss_pred EEEEeCCCH------HHhCCcHHHHHHHHHHHHHHhcccccCCCEEEEECCCCcc--HHHHHHHhhCCeeEEeEccccch
Confidence 577776543 35666443 223333333 22468999999997764 4565554321 10
Q ss_pred HHHHHHHHHHHHHHc--CCCeEEEeecCCCCccCCCCCCCcchhhhHHHHHHHH
Q psy4449 1809 RSKFIAHVVNFILEH--NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKEL 1860 (2417)
Q Consensus 1809 R~~Fi~siv~~l~~y--gfDGiDiDwEyP~~~~~~~~~~~~~d~~~~~~llkeL 1860 (2417)
-.-=-+.+.+.+++. ++|.+-|||. +....+|+.+..|+++|
T Consensus 217 ~~~~~~~i~~a~~ks~~~~~~~~id~K----------~~k~~~r~~i~~~le~~ 260 (267)
T PRK03995 217 DHLSEEVLIQAIEKSTPEIDRIVIDWK----------GVKSEDRERIIEFLEEL 260 (267)
T ss_pred hcCCHHHHHHHHHhccCCCCEEEEecC----------CCCHHHHHHHHHHHHHC
Confidence 000011245556664 7899999998 33457888888888776
No 242
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=22.10 E-value=2.3e+02 Score=34.72 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=48.4
Q ss_pred hHHHHHHHHhHhcCCEEEEEecc---CCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHc----CCCccccccCCcccccc
Q psy4449 1401 ILFYERVVTLKKKGVKVSLAIGG---WNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY----QFDGLDLDWEYPTCWQV 1473 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~g~Kv~~sigg---w~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~y----gfDGvDlD~E~p~~~~~ 1473 (2417)
..+.+.|..++++|++|+|-+.+ |.... + .........+.|.+-+..+.++| ..-|++|==| |.....
T Consensus 62 ~~ld~~v~~a~~~gi~vild~h~~~~w~~~~-~---~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NE-P~~~~~ 136 (281)
T PF00150_consen 62 ARLDRIVDAAQAYGIYVILDLHNAPGWANGG-D---GYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNE-PNGGND 136 (281)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEESTTCSSST-S---TTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSS-GCSTTS
T ss_pred HHHHHHHHHHHhCCCeEEEEeccCccccccc-c---ccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCC-ccccCC
Confidence 45667888999999999998887 52211 1 11122223333444344455555 3455555445 332111
Q ss_pred ccCCCCCChhhHHHHHHHHHHHhcCCCc
Q psy4449 1474 NCDAGPDSDKESFGLFVRELHQAFKPHG 1501 (2417)
Q Consensus 1474 ~~~~~~~~d~~~~~~fv~eL~~~l~~~~ 1501 (2417)
. ........+.+..+++++.+++++.+
T Consensus 137 ~-~~w~~~~~~~~~~~~~~~~~~Ir~~~ 163 (281)
T PF00150_consen 137 D-ANWNAQNPADWQDWYQRAIDAIRAAD 163 (281)
T ss_dssp T-TTTSHHHTHHHHHHHHHHHHHHHHTT
T ss_pred c-cccccccchhhhhHHHHHHHHHHhcC
Confidence 0 00012234667777777776665543
No 243
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=21.90 E-value=1.2e+02 Score=35.61 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=44.7
Q ss_pred hhhhHHHHHHHHhHhcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCc-cccccCCccccccccC
Q psy4449 1398 YVHILFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDG-LDLDWEYPTCWQVNCD 1476 (2417)
Q Consensus 1398 ~~~~~~~~~v~~~k~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDG-vDlD~E~p~~~~~~~~ 1476 (2417)
.+|..|.+.+..+++.|++| |-+ .|.....++.++ ++..++.++.+..+- +-||+|+-+. ++
T Consensus 43 ~~D~~f~~n~~~A~~~Gl~v----GaY------Hf~~~~~~~~~Q---A~~F~~~v~~~~~~lp~vlD~E~~~~----~~ 105 (190)
T cd06419 43 YFDDNFLSNFSRAQGTGLSV----GVI------HTFSFSSTAAAQ---YRYFIRKVGNNTGNLPIAIYVSYYGD----YN 105 (190)
T ss_pred ccChhHHHHHHHHHHCCCCE----EEE------EEeecCCCHHHH---HHHHHHhCCCCCCCCCeEEEEecCCC----CC
Confidence 45678899999999999987 211 111112233332 334444455554443 3488885321 11
Q ss_pred CCCCChhhHHHHHHHHHHHhcC
Q psy4449 1477 AGPDSDKESFGLFVRELHQAFK 1498 (2417)
Q Consensus 1477 ~~~~~d~~~~~~fv~eL~~~l~ 1498 (2417)
....+-.+....||++|++.-+
T Consensus 106 ~~~~~~~~~~~~fl~~ve~~~g 127 (190)
T cd06419 106 PDTKKSTQKLGLLVQLLEQHYN 127 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHHHC
Confidence 1112223556677777766553
No 244
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=21.90 E-value=1.2e+02 Score=40.40 Aligned_cols=107 Identities=19% Similarity=0.362 Sum_probs=63.4
Q ss_pred ccchhccCCHHHHHHHHHHHHHHHHHhCCCccccccccCc--------chhc-----------------------cccc-
Q psy4449 2276 DKYSRLVNDIPARRNFVRHVTEFLEFYGFNGLEFAWEYPK--------CWQT-----------------------CSTV- 2323 (2417)
Q Consensus 2276 ~~~~~~~~~~~~r~~f~~~~~~~~~~~~fdgld~~we~p~--------~~~~-----------------------c~~~- 2323 (2417)
..+-.+. +|++|+=|-+.+-++++++|+||+=+|+-=|. +.+. -+.+
T Consensus 144 ~~~~Dft-np~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~ 222 (441)
T PF01055_consen 144 GGFIDFT-NPEARDWWKEQLKELLDDYGVDGWWLDFGEPSSFDSNNTLPEDAVHHDGYSGYEMHNLYGLLYAKATYEALR 222 (441)
T ss_dssp EEEB-TT-SHHHHHHHHHHHHHHHTTST-SEEEEESTTTBSSTTTBSBCTTEECTTECEHHHHGGGHHHHHHHHHHHHHH
T ss_pred ccccCCC-ChhHHHHHHHHHHHHHhccCCceEEeecCCcccccccccCcccceecCCCCchheeccccccchhhhhhhhh
Confidence 4555554 88999999899999999999999999993222 1111 2222
Q ss_pred --cCCCcEEEEcCCCCccceeecCCeeeEecch---HHHHHHHHHhhhcCCCceeeeeccccccccc
Q psy4449 2324 --KSHEWTVVRDSLGARGPYAYNGKLWLSYDDT---RDIRRKCKSIKQDGLGGAMVWSIDLDDFQNL 2385 (2417)
Q Consensus 2324 --~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~---~~~~~k~~~~~~~~~~g~~~~~~~~dd~~~~ 2385 (2417)
+.+.--++.-.-+-.|.=. ...+|.| |.. ..|+.-..-+-.+++-|...|.-|+--|.+.
T Consensus 223 ~~~~~~r~~~~sRs~~~G~qr-~~~~w~G-D~~s~w~~L~~~i~~~l~~~~~G~~~~g~DigG~~~~ 287 (441)
T PF01055_consen 223 EIDPNKRPFIFSRSGWAGSQR-YGGHWSG-DNSSSWDGLRSSIPAMLNMGLSGYPFWGSDIGGFSGD 287 (441)
T ss_dssp HHSTTSC-EEEESSEETTGGG-TCEEEEC-SSBSSHHHHHHHHHHHHHHHCTT-SSEEEEET-SBST
T ss_pred hccCCCCcceeecccCCCCCc-cceeecc-cccccHHHHHHHHHHHHHHhhhhcceecCcccccCCC
Confidence 2122233333332221111 1223544 222 3578888888999999999999999888776
No 245
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=21.52 E-value=3.9e+02 Score=31.80 Aligned_cols=92 Identities=18% Similarity=0.194 Sum_probs=63.1
Q ss_pred hHHHHHHHHhHhcCCEEEE--EeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccCCccccccccCCC
Q psy4449 1401 ILFYERVVTLKKKGVKVSL--AIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAG 1478 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~g~Kv~~--siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~~~~~~ 1478 (2417)
+..-+.+..+++.|+||.+ .||= ..+ + -..--..++.|.+|.-|-+.|+---|.- +...++.
T Consensus 136 ~dyl~~l~~L~e~~irvvpHitiGL-~~g------k--------i~~e~kaIdiL~~~~~DalVl~vliPtp-Gtkm~~~ 199 (275)
T COG1856 136 EDYLRSLLLLKENGIRVVPHITIGL-DFG------K--------IHGEFKAIDILVNYEPDALVLVVLIPTP-GTKMGNS 199 (275)
T ss_pred HHHHHHHHHHHHcCceeceeEEEEe-ccC------c--------ccchHHHHHHHhcCCCCeEEEEEEecCC-chhccCC
Confidence 3445567788999999877 3332 111 1 1112457899999999999999865653 3666778
Q ss_pred CCChhhHHHHHHHHHHHhcCCCceeEEEeec
Q psy4449 1479 PDSDKESFGLFVRELHQAFKPHGLLLSAAVS 1509 (2417)
Q Consensus 1479 ~~~d~~~~~~fv~eL~~~l~~~~~~ls~av~ 1509 (2417)
++.+.+.-+..++..|++|. +.+.|--+=|
T Consensus 200 ~pp~~eE~i~v~~~AR~~f~-~pv~iGCmrP 229 (275)
T COG1856 200 PPPPVEEAIKVVKYARKKFP-NPVSIGCMRP 229 (275)
T ss_pred CCcCHHHHHHHHHHHHHhCC-CCeeEeecCc
Confidence 88899999999999999994 3343333333
No 246
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=21.04 E-value=97 Score=37.83 Aligned_cols=43 Identities=14% Similarity=0.122 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCcchhhhHHHHHHHHHHhcCCCCcEEEEE
Q psy4449 1813 IAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAA 1874 (2417)
Q Consensus 1813 i~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~~d~~~~~~llkeLr~~l~~~~~~Ls~a 1874 (2417)
+..+++.+++.|||||+|.+.+. .-+++||+.++..|+.++..
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~~-------------------~~~~~l~~~l~~~gl~v~~~ 58 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPYD-------------------WDAEALKARLAAAGLEQVLF 58 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCcc-------------------CCHHHHHHHHHHcCCeEEEE
Confidence 56688899999999999975321 12567777777788877653
No 247
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=20.88 E-value=2.5e+02 Score=35.54 Aligned_cols=88 Identities=16% Similarity=0.196 Sum_probs=53.3
Q ss_pred hhhhhhccccCCCceEEEEecccccccccChHHHHHHHHHHHHHHHhcC-CCceEEEecCCCCCCCCCchhhhhhhhHHH
Q psy4449 73 YKSFLGLKEANPELKVYLAVKSNFVSITSDRESRLNFISSVLEMFDMYK-FDGLDLNVKDPALNDEDDDDLESIANERSD 151 (2417)
Q Consensus 73 y~~~~~LK~~~P~lkvlLsVGg~f~~~~~~~~~R~~fi~siv~~l~~~~-fDGidl~W~~p~~~~~~~~~~~~~~~~r~~ 151 (2417)
.+++..+|+..++..|++||-|.- . ..|+ .+++.+++.+ .|+|+||.--|..... .....+.+.
T Consensus 80 ~~~i~~~~~~~~~~pvI~Si~G~~------~---~~~~-~~a~~~~~~g~ad~iElN~ScPn~~~~-----~~~g~d~~~ 144 (310)
T PRK02506 80 LDYVLELQKKGPNKPHFLSVVGLS------P---EETH-TILKKIQASDFNGLVELNLSCPNVPGK-----PQIAYDFET 144 (310)
T ss_pred HHHHHHHHhhcCCCCEEEEEEeCc------H---HHHH-HHHHHHhhcCCCCEEEEECCCCCCCCc-----cccccCHHH
Confidence 344445565555688899984411 1 2233 2334466777 8999999998853221 111234556
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEecCcc
Q psy4449 152 FSTFIQELSSTLRRNNYQLTLTSPGVI 178 (2417)
Q Consensus 152 f~~ll~eL~~~l~~~~~~Lsv~v~p~~ 178 (2417)
+..+++.++++.+ ..|.+-++|+.
T Consensus 145 ~~~i~~~v~~~~~---~Pv~vKlsp~~ 168 (310)
T PRK02506 145 TEQILEEVFTYFT---KPLGVKLPPYF 168 (310)
T ss_pred HHHHHHHHHHhcC---CccEEecCCCC
Confidence 7778888887654 34777788864
No 248
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=20.81 E-value=3.3e+02 Score=34.88 Aligned_cols=77 Identities=13% Similarity=0.140 Sum_probs=47.0
Q ss_pred hHHHHHHHHhHhc-CCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccCCccccccccCCCC
Q psy4449 1401 ILFYERVVTLKKK-GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGP 1479 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~-g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~~~~~~~ 1479 (2417)
+.+.+.+..++++ ++.|+++|+|-+. ..+ ..++..+++.|+|+|+|.+-+|-.. .+.. .
T Consensus 87 d~~~~~i~~~~~~~~~pvi~sI~g~~~----------------~e~-~~~a~~~~~agad~ielN~scpp~~-~~~~--g 146 (334)
T PRK07565 87 EEYLELIRRAKEAVDIPVIASLNGSSA----------------GGW-VDYARQIEQAGADALELNIYYLPTD-PDIS--G 146 (334)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccCCH----------------HHH-HHHHHHHHHcCCCEEEEeCCCCCCC-CCCc--c
Confidence 4455555555444 6899999987321 123 3455566778999999998754321 1111 1
Q ss_pred CChhhHHHHHHHHHHHhc
Q psy4449 1480 DSDKESFGLFVRELHQAF 1497 (2417)
Q Consensus 1480 ~~d~~~~~~fv~eL~~~l 1497 (2417)
....+.+.++|++++++.
T Consensus 147 ~~~~~~~~eil~~v~~~~ 164 (334)
T PRK07565 147 AEVEQRYLDILRAVKSAV 164 (334)
T ss_pred ccHHHHHHHHHHHHHhcc
Confidence 123345778888888876
No 249
>PLN02411 12-oxophytodienoate reductase
Probab=20.81 E-value=2.1e+02 Score=37.55 Aligned_cols=67 Identities=15% Similarity=0.251 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEeecC---------CCCc-cCCCCCCCcchhhhHH-HHHHHHHHhcCCCCcEEEEEEC
Q psy4449 1808 ARSKFIAHVVNFILEHNFDGLDLDWEY---------PKCW-QVDCKQGPASDKQGFA-DLIKELRAAFNPHDLLLSAAVS 1876 (2417)
Q Consensus 1808 ~R~~Fi~siv~~l~~ygfDGiDiDwEy---------P~~~-~~~~~~~~~~d~~~~~-~llkeLr~~l~~~~~~Ls~av~ 1876 (2417)
..+.|++.+ ...++-|||||+|.--+ |... ..|.-+++.++|..|. ..|+++|++..+. + |.+-++
T Consensus 163 ii~~f~~AA-~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d-~-vgvRiS 239 (391)
T PLN02411 163 VVEHYRQAA-LNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGAD-R-VGVRVS 239 (391)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCC-e-EEEEEc
Confidence 445677655 45566899999997543 3211 1233355667777666 5778899998654 3 677776
Q ss_pred C
Q psy4449 1877 P 1877 (2417)
Q Consensus 1877 ~ 1877 (2417)
+
T Consensus 240 ~ 240 (391)
T PLN02411 240 P 240 (391)
T ss_pred c
Confidence 5
No 250
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.77 E-value=1.8e+02 Score=36.44 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=45.4
Q ss_pred HHHHHHHhHhcCCEEEEEeccCC--CcCCCchhh-----------------hhcCHHHHHHHHHHHHHHHHHcCCCcccc
Q psy4449 1403 FYERVVTLKKKGVKVSLAIGGWN--DSLGGKYSR-----------------LVNSATARQRFIEHVVKFLLKYQFDGLDL 1463 (2417)
Q Consensus 1403 ~~~~v~~~k~~g~Kv~~siggw~--~~~~~~~~~-----------------~~~~~~~r~~fi~~iv~~l~~ygfDGvDl 1463 (2417)
..+-|..||++|+||++.|---- +...+.|.. -+.++++|+-|.+.+.+.+.++|+||+=+
T Consensus 76 p~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~ 155 (292)
T cd06595 76 PEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWL 155 (292)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEe
Confidence 35677889999999999774210 000011111 23578899999999999999999999999
Q ss_pred cc
Q psy4449 1464 DW 1465 (2417)
Q Consensus 1464 D~ 1465 (2417)
|+
T Consensus 156 D~ 157 (292)
T cd06595 156 DW 157 (292)
T ss_pred cC
Confidence 98
No 251
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=20.76 E-value=3.6e+02 Score=34.58 Aligned_cols=86 Identities=19% Similarity=0.325 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhC-CCEEEEEEcCCCCCCCcchhHhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCccCCCCCCCc
Q psy4449 1769 KFYEKVTALKKK-GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPA 1847 (2417)
Q Consensus 1769 ~~~~~i~~lk~~-glKvllsIGGw~~s~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGiDiDwEyP~~~~~~~~~~~~ 1847 (2417)
.+.+.+..++++ ++.|+++|+|.+. +.| ..++..+++.|+|+|+|++-.|.... +.. ..
T Consensus 88 ~~~~~i~~~~~~~~~pvi~sI~g~~~----------------~e~-~~~a~~~~~agad~ielN~scpp~~~-~~~--g~ 147 (334)
T PRK07565 88 EYLELIRRAKEAVDIPVIASLNGSSA----------------GGW-VDYARQIEQAGADALELNIYYLPTDP-DIS--GA 147 (334)
T ss_pred HHHHHHHHHHHhcCCcEEEEeccCCH----------------HHH-HHHHHHHHHcCCCEEEEeCCCCCCCC-CCc--cc
Confidence 344555555544 6899999987321 122 23555667789999999997643211 111 12
Q ss_pred chhhhHHHHHHHHHHhcCCCCcEEEEEECC
Q psy4449 1848 SDKQGFADLIKELRAAFNPHDLLLSAAVSP 1877 (2417)
Q Consensus 1848 ~d~~~~~~llkeLr~~l~~~~~~Ls~av~~ 1877 (2417)
+..+.+..+|+++|++.+ +-|.+-+.+
T Consensus 148 ~~~~~~~eil~~v~~~~~---iPV~vKl~p 174 (334)
T PRK07565 148 EVEQRYLDILRAVKSAVS---IPVAVKLSP 174 (334)
T ss_pred cHHHHHHHHHHHHHhccC---CcEEEEeCC
Confidence 233457788899988763 445555544
No 252
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=20.66 E-value=1.6e+02 Score=27.43 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCCc-cccccCCccccccccCCCCCChhhHHHHHHHHHHHhc
Q psy4449 1447 EHVVKFLLKYQFDG-LDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAF 1497 (2417)
Q Consensus 1447 ~~iv~~l~~ygfDG-vDlD~E~p~~~~~~~~~~~~~d~~~~~~fv~eL~~~l 1497 (2417)
+.++..|++.|||| |.|.|| ....+-.+.+.+-++-||..+
T Consensus 3 ~~i~~~L~~~GYdG~~siE~E----------D~~~~~~~G~~~a~~~lr~~l 44 (55)
T PF07582_consen 3 KRIFSALREIGYDGWLSIEHE----------DALMDPEEGAREAAAFLRKLL 44 (55)
T ss_dssp HHHHHHHHHTT--SEEEE-------------STTTSHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHcCCCceEEEEee----------cCCCCHHHHHHHHHHHHHHhc
Confidence 46788999999999 578888 223455677888788787766
No 253
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=20.59 E-value=61 Score=44.33 Aligned_cols=84 Identities=15% Similarity=0.281 Sum_probs=35.8
Q ss_pred HHHhhcCCcccCCCcEEEE---EecCCCCCCCcchhhhccCHHHHHH-HHHHHHHHhhhCCcceEEEEecCCCccCCcCC
Q psy4449 443 YQRISSSPLVTHGKVKILI---AIGGWTDSSGEKYSQLISSGSNRKK-FIKSVLTFLRRFDFAGLHFDWNYPVCWQADCS 518 (2417)
Q Consensus 443 ~~~~~~lk~~~~p~lKvll---SiGGw~~s~g~~fs~~~s~~~~R~~-fi~svv~~l~~ygfDGiDiDwEyP~~~~~~~~ 518 (2417)
+..++++| ++||++|+.+ +.=||-... .+ .-..+...-.. .++-|...-+.| |+|||+--+ |
T Consensus 115 ~~L~~eAK-krNP~ikl~~L~W~~PgW~~~g--~~-~~~~~~~~~a~Y~~~wl~ga~~~~---gl~idYvg~--~----- 180 (669)
T PF02057_consen 115 WWLMAEAK-KRNPNIKLYGLPWGFPGWVGNG--WN-WPYDNPQLTAYYVVSWLLGAKKTH---GLDIDYVGI--W----- 180 (669)
T ss_dssp HHHHHHHH-HH-TT-EEEEEES-B-GGGGTT--SS--TTSSHHHHHHHHHHHHHHHHHHH--------EE-S--------
T ss_pred hhhHHHHH-hhCCCCeEEEeccCCCccccCC--CC-CcccchhhhhHHHHHHHHHHHHHh---CCCceEech--h-----
Confidence 44566666 7899999984 334665431 11 11112221111 222233333444 567777532 1
Q ss_pred CCCcchhhhHHHHHHHHHHHhccCCc
Q psy4449 519 KQHKADKGNFVKLIQELKAEFDKHDY 544 (2417)
Q Consensus 519 ~~~~~d~~nf~~ll~eLR~~f~~~~~ 544 (2417)
+++..=...++.||++|+..+|
T Consensus 181 ----NEr~~~~~~ik~lr~~l~~~gy 202 (669)
T PF02057_consen 181 ----NERGFDVNYIKWLRKALNSNGY 202 (669)
T ss_dssp ----TTS---HHHHHHHHHHHHHTT-
T ss_pred ----hccCCChhHHHHHHHHHhhccc
Confidence 1111124578999999998873
No 254
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.56 E-value=1.5e+02 Score=38.16 Aligned_cols=105 Identities=17% Similarity=0.264 Sum_probs=60.8
Q ss_pred CccchhccCCHHHHHHHHHHHHHHHHHhCCCccccccc---cCc------chhc------------------cccccCCC
Q psy4449 2275 SDKYSRLVNDIPARRNFVRHVTEFLEFYGFNGLEFAWE---YPK------CWQT------------------CSTVKSHE 2327 (2417)
Q Consensus 2275 ~~~~~~~~~~~~~r~~f~~~~~~~~~~~~fdgld~~we---~p~------~~~~------------------c~~~~~~~ 2327 (2417)
..-+-.++ +|++|+=|.+.+-.|++++|+||.=+|-- ||. +... +.......
T Consensus 150 ~~~~~Dft-np~a~~Ww~~~~~~~~~~~Gidg~w~D~~E~~~~~~~~~~~g~~~~~~hN~y~~~~~~~~~e~~~~~~~r~ 228 (340)
T cd06597 150 DSLMLDFT-NPEAAQWWMEKRRYLVDELGIDGFKTDGGEHVWGRDLHFRDGRRGDEMRNTYPNHYVRAYNDFLRRAKKDG 228 (340)
T ss_pred CceeecCC-CHHHHHHHHHHHHHHHHhcCCcEEEecCCCccCCCCceecCCCcHHHhhcccHHHHHHHHHHHHHhccCCc
Confidence 33555666 89999988888888888999999888722 222 1110 22222222
Q ss_pred cEEEEcCCCCccceeecCCeeeEecchH---HHHHHHHHhhhcCCCceeeeecccccccc
Q psy4449 2328 WTVVRDSLGARGPYAYNGKLWLSYDDTR---DIRRKCKSIKQDGLGGAMVWSIDLDDFQN 2384 (2417)
Q Consensus 2328 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~---~~~~k~~~~~~~~~~g~~~~~~~~dd~~~ 2384 (2417)
..+++- |=.|.=.| .-.|.| |... .+|.-..-+..+||-|...|.-|+--|.|
T Consensus 229 filtRs--~~~Gsqry-~~~WsG-D~~s~W~~L~~~i~~~L~~glsG~~~~g~DIgGF~g 284 (340)
T cd06597 229 VTFSRA--GYTGAQAH-GIFWAG-DENSTFGAFRWSVFAGLSASASGIPYWGWDLAGFTG 284 (340)
T ss_pred EEEEec--ccCccCCC-cceecC-CCCCCHHHHHHHHHHHHHHhhcCCCcCCCccCCcCC
Confidence 222222 11111111 224544 3222 36666666778899999999999887665
No 255
>cd06417 GH25_LysA-like LysA is a cell wall endolysin produced by Lactobacillus fermentum, which degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. The N-terminal glycosyl hydrolase family 25 (GH25) domain of LysA has sequence similarity with other murein hydrolase catalytic domains while the C-terminal domain has sequence similarity with putative bacterial cell wall-binding SH3b domains. This domain family also includes LysL of Lactococcus lactis.
Probab=20.52 E-value=2.4e+02 Score=33.06 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=44.5
Q ss_pred hhhhHHHHHHHHhHhcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcC-CCccccccCCccccccccC
Q psy4449 1398 YVHILFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQ-FDGLDLDWEYPTCWQVNCD 1476 (2417)
Q Consensus 1398 ~~~~~~~~~v~~~k~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~yg-fDGvDlD~E~p~~~~~~~~ 1476 (2417)
.+|..|.+.+..+++.|++| |-+- |... .++.+. ++..++.|+.+. -.-+-||+|-+..
T Consensus 33 ~~D~~f~~n~~~A~~aGl~~----G~Yh------f~~~-~~a~~q---A~~f~~~~~~~~~~~~~~lD~E~~~~------ 92 (195)
T cd06417 33 YVNPSWRSQAAQAIAAGKLL----GLYH------YANG-GNAIAE---ADYFLNNIKGYVGKAVLVLDWESYQN------ 92 (195)
T ss_pred cCChHHHHHHHHHHHcCCce----EEEE------ECCC-CCHHHH---HHHHHHHhccccCCCcEEEEeeCCCC------
Confidence 46678999999999999865 2221 1111 233332 233333344443 2357899995331
Q ss_pred CCCCChhhHHHHHHHHHHHhc
Q psy4449 1477 AGPDSDKESFGLFVRELHQAF 1497 (2417)
Q Consensus 1477 ~~~~~d~~~~~~fv~eL~~~l 1497 (2417)
...........||++|+++.
T Consensus 93 -~~~~~~~~~~~f~~~v~~~~ 112 (195)
T cd06417 93 -SAWGNSAWARQWVNRVHELT 112 (195)
T ss_pred -CchHHHHHHHHHHHHHHHHH
Confidence 12233455667888887654
No 256
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.47 E-value=3.7e+02 Score=33.65 Aligned_cols=89 Identities=18% Similarity=0.246 Sum_probs=63.1
Q ss_pred hhhHHHHHHHHhHhcCCEEEEEeccCCCcCCCchhhhhcCHHHHHHHHHHHHHHHHHcCCCccccccCCccccccccCCC
Q psy4449 1399 VHILFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAG 1478 (2417)
Q Consensus 1399 ~~~~~~~~v~~~k~~g~Kv~~siggw~~~~~~~~~~~~~~~~~r~~fi~~iv~~l~~ygfDGvDlD~E~p~~~~~~~~~~ 1478 (2417)
+.++..+++..++++|++.-|+|=- +.+..+-..+++......++.|++-..++++
T Consensus 15 i~~~l~~~v~~l~~~g~~P~LaiI~------------vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~------------ 70 (284)
T PRK14193 15 IKADLAERVAALKEKGITPGLGTVL------------VGDDPGSQAYVRGKHRDCAEVGITSIRRDLP------------ 70 (284)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEE------------eCCCHHHHHHHHHHHHHHHHcCCEEEEEECC------------
Confidence 4456677788888877655443211 1123345889999999999999888888776
Q ss_pred CCChhhHHHHHHHHHHHhcCCCceeEEEeecCC
Q psy4449 1479 PDSDKESFGLFVRELHQAFKPHGLLLSAAVSPS 1511 (2417)
Q Consensus 1479 ~~~d~~~~~~fv~eL~~~l~~~~~~ls~av~p~ 1511 (2417)
.....+.+.+.|++|.+.-.=+|.++-..+|+.
T Consensus 71 ~~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~ 103 (284)
T PRK14193 71 ADATQEELNAVIDELNADPACTGYIVQLPLPKH 103 (284)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCC
Confidence 234556688888888887766888888887654
No 257
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=20.41 E-value=1.7e+02 Score=40.99 Aligned_cols=66 Identities=20% Similarity=0.358 Sum_probs=47.6
Q ss_pred hHHHHHHHHhHhcCCEEEEEe-cc------------------------------CCCcCCCchhhhhcCHHHHHHHHHHH
Q psy4449 1401 ILFYERVVTLKKKGVKVSLAI-GG------------------------------WNDSLGGKYSRLVNSATARQRFIEHV 1449 (2417)
Q Consensus 1401 ~~~~~~v~~~k~~g~Kv~~si-gg------------------------------w~~~~~~~~~~~~~~~~~r~~fi~~i 1449 (2417)
.+|..-|+++|+.||.|+|=| -+ ..+..|-...--++.+-.|+=.+++|
T Consensus 265 ~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivDsL 344 (697)
T COG1523 265 KEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVDSL 344 (697)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHHHH
Confidence 578899999999999999922 11 00000111112223577899999999
Q ss_pred HHHHHHcCCCccccccC
Q psy4449 1450 VKFLLKYQFDGLDLDWE 1466 (2417)
Q Consensus 1450 v~~l~~ygfDGvDlD~E 1466 (2417)
.=++++|+.||+-+|.=
T Consensus 345 rYWv~e~hVDGFRFDLa 361 (697)
T COG1523 345 RYWVEEYHVDGFRFDLA 361 (697)
T ss_pred HHHHHHhCCCceeecch
Confidence 99999999999999976
No 258
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=20.25 E-value=2.8e+02 Score=36.09 Aligned_cols=88 Identities=18% Similarity=0.208 Sum_probs=48.3
Q ss_pred HHHHHHHhHhcCCEEEEEecc-----CC-----C-----------cCCCchhhhhcCHHHHHHHHHHHHHHHHHcC----
Q psy4449 1403 FYERVVTLKKKGVKVSLAIGG-----WN-----D-----------SLGGKYSRLVNSATARQRFIEHVVKFLLKYQ---- 1457 (2417)
Q Consensus 1403 ~~~~v~~~k~~g~Kv~~sigg-----w~-----~-----------~~~~~~~~~~~~~~~r~~fi~~iv~~l~~yg---- 1457 (2417)
+.+.|..++++|+||+|.+.. |- + ..+.....-..++.-|+.+.+-+-.++++|+
T Consensus 49 lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~ 128 (374)
T PF02449_consen 49 LDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPA 128 (374)
T ss_dssp HHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccce
Confidence 445677889999999998863 20 0 0011111223455555555544455556665
Q ss_pred CCccccccCCccccccccCCCCCChhhHHHHHHHHHHHhcC
Q psy4449 1458 FDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFK 1498 (2417)
Q Consensus 1458 fDGvDlD~E~p~~~~~~~~~~~~~d~~~~~~fv~eL~~~l~ 1498 (2417)
+-|++||=|+ +. . ..-.......|.+-|+++.+
T Consensus 129 vi~~~i~NE~-~~-----~--~~~~~~~~~~f~~wLk~kY~ 161 (374)
T PF02449_consen 129 VIGWQIDNEP-GY-----H--RCYSPACQAAFRQWLKEKYG 161 (374)
T ss_dssp EEEEEECCST-TC-----T--S--SHHHHHHHHHHHHHHHS
T ss_pred EEEEEecccc-Cc-----C--cCCChHHHHHHHHHHHHHhC
Confidence 7799999884 21 0 22333445566666666663
No 259
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=20.01 E-value=3.3e+02 Score=29.95 Aligned_cols=57 Identities=18% Similarity=0.281 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCEEEEEEcCCCCCCCcchhHhhc-CHHHHHHHHHHHHHHHHHcCCCeEEE
Q psy4449 1770 FYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVN-SQQARSKFIAHVVNFILEHNFDGLDL 1830 (2417)
Q Consensus 1770 ~~~~i~~lk~~glKvllsIGGw~~s~~~~fs~~~~-~~~~R~~Fi~siv~~l~~ygfDGiDi 1830 (2417)
|.-.+..+++.|+++|+-|==-| .+|..-+. +.+.|+.|.+.|...++++||.=+||
T Consensus 38 l~l~L~~~k~~g~~~lfVi~PvN----g~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~ 95 (130)
T PF04914_consen 38 LQLLLDVCKELGIDVLFVIQPVN----GKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADF 95 (130)
T ss_dssp HHHHHHHHHHTT-EEEEEE--------HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-
T ss_pred HHHHHHHHHHcCCceEEEecCCc----HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 44457778899999998773221 23443343 78999999999999999999977776
Done!