BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy445
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JHB|A Chain A, Core Binding Factor Beta
Length = 143
Score = 122 bits (307), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 69/94 (73%)
Query: 39 MPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIAT 98
MPRVVPDQ+SKFE++E FR+LSRE E++YTGFRDRP EERQ RFQN CR+G +EIAF+AT
Sbjct: 3 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQTRFQNACRDGRSEIAFVAT 62
Query: 99 GTNIQLVFNPSISANSYHMAPPSRECDFDKEHGK 132
GTN+ L F P+ P D ++E GK
Sbjct: 63 GTNLSLQFFPASWQGEQRQTPSREYVDLEREAGK 96
>pdb|1IO4|D Chain D, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN-
Cbfbeta Core Domain Heterodimer And CEBPBETA BZIP
Homodimer Bound To A Dna Fragment From The Csf-1r
Promoter
pdb|1ILF|A Chain A, Nmr Structure Of Apo Cbfb
Length = 141
Score = 122 bits (307), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 69/94 (73%)
Query: 39 MPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIAT 98
MPRVVPDQ+SKFE++E FR+LSRE E++YTGFRDRP EERQ RFQN CR+G +EIAF+AT
Sbjct: 1 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQTRFQNACRDGRSEIAFVAT 60
Query: 99 GTNIQLVFNPSISANSYHMAPPSRECDFDKEHGK 132
GTN+ L F P+ P D ++E GK
Sbjct: 61 GTNLSLQFFPASWQGEQRQTPSREYVDLEREAGK 94
>pdb|1H9D|B Chain B, Aml1CBF-BetaDNA COMPLEX
pdb|1H9D|D Chain D, Aml1CBF-BetaDNA COMPLEX
pdb|1E50|B Chain B, Aml1CBF COMPLEX
pdb|1E50|D Chain D, Aml1CBF COMPLEX
pdb|1E50|F Chain F, Aml1CBF COMPLEX
pdb|1E50|H Chain H, Aml1CBF COMPLEX
Length = 134
Score = 120 bits (301), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 55/93 (59%), Positives = 68/93 (73%)
Query: 40 PRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATG 99
PRVVPDQ+SKFE++E FR+LSRE E++YTGFRDRP EERQ RFQN CR+G +EIAF+ATG
Sbjct: 1 PRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATG 60
Query: 100 TNIQLVFNPSISANSYHMAPPSRECDFDKEHGK 132
TN+ L F P+ P D ++E GK
Sbjct: 61 TNLSLQFFPASWQGEQRQTPSREYVDLEREAGK 93
>pdb|1CL3|A Chain A, Molecular Insights Into Pebp2CBF-Smmhc Associated Acute
Leukemia Revealed From The Three-Dimensional Structure
Of Pebp2CBF BETA
Length = 138
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 65/90 (72%)
Query: 43 VPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATGTNI 102
VPDQ+SKFE++E FR+LSRE E++YTGFRDRP EERQ RFQN CR+G +EIAF+ATGTN+
Sbjct: 2 VPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQTRFQNACRDGRSEIAFVATGTNL 61
Query: 103 QLVFNPSISANSYHMAPPSRECDFDKEHGK 132
L F P+ P D ++E GK
Sbjct: 62 SLQFFPASWQGEQRQTPSREYVDLEREAGK 91
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 39 MPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQ 79
M R D+K+ E++E ++L +ESE ++ DR +EER+
Sbjct: 28 MDRGFIDEKTVKEAEEAAKKLGKESE-KFAFLLDRLKEERE 67
>pdb|2Z87|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
pdb|2Z87|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
Length = 624
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 112 ANSYHMAPPSRECDFDKEHGKSVS 135
A +YH PP +E + D+ GK+++
Sbjct: 324 AMAYHQEPPGKENETDRAAGKNIT 347
>pdb|2Z86|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|C Chain C, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|D Chain D, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
Length = 625
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 112 ANSYHMAPPSRECDFDKEHGKSVS 135
A +YH PP +E + D+ GK+++
Sbjct: 325 AMAYHQEPPGKENETDRAAGKNIT 348
>pdb|2Z2S|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Sige In
Complex With The Anti-Sigma Chrr
pdb|2Z2S|C Chain C, Crystal Structure Of Rhodobacter Sphaeroides Sige In
Complex With The Anti-Sigma Chrr
pdb|2Z2S|E Chain E, Crystal Structure Of Rhodobacter Sphaeroides Sige In
Complex With The Anti-Sigma Chrr
pdb|2Z2S|G Chain G, Crystal Structure Of Rhodobacter Sphaeroides Sige In
Complex With The Anti-Sigma Chrr
Length = 184
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 22 FDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSR 61
DG+ QP+P +F P PDQ +E + RL R
Sbjct: 92 IDGLRKDRQPEPEDLFWGPDSEPDQADVYEXQQENARLGR 131
>pdb|2Q1Z|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Sige In
Complex With The Anti-Sigma Chrr
pdb|2Q1Z|C Chain C, Crystal Structure Of Rhodobacter Sphaeroides Sige In
Complex With The Anti-Sigma Chrr
Length = 184
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 22 FDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSR 61
DG+ QP+P +F P PDQ +E + RL R
Sbjct: 92 IDGLRKDRQPEPEDLFWGPDSEPDQADVYEMQQENARLGR 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,235,807
Number of Sequences: 62578
Number of extensions: 158425
Number of successful extensions: 231
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 10
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)