BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy445
(142 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24040|BGB_DROME Protein big brother OS=Drosophila melanogaster GN=Bgb PE=2 SV=3
Length = 213
Score = 186 bits (472), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/119 (75%), Positives = 101/119 (84%), Gaps = 5/119 (4%)
Query: 14 AQLSGMLPFDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDR 73
A L+ M+P+D IGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTG+R+R
Sbjct: 5 AALANMIPYDTIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTGYRER 64
Query: 74 PQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMAPPSRECDFDKEHGK 132
EERQVRF NGCREGHTE +F+A+GTN+QLVFN + N Y +ECDFDKEHGK
Sbjct: 65 SIEERQVRFMNGCREGHTEASFVASGTNLQLVFNA--NQNPY---LHDKECDFDKEHGK 118
>sp|Q24039|BRO_DROME Protein brother OS=Drosophila melanogaster GN=Bro PE=2 SV=2
Length = 213
Score = 152 bits (384), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/121 (60%), Positives = 97/121 (80%), Gaps = 6/121 (4%)
Query: 13 CAQLSGMLP-FDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTGFR 71
A ++GM+P ++ + +YEQPKPRFIFKMPRVVPDQ+SKF+SDELFRRLSRESEVRYTG+R
Sbjct: 10 AAAMNGMIPPYEAMAMYEQPKPRFIFKMPRVVPDQRSKFDSDELFRRLSRESEVRYTGYR 69
Query: 72 DRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMAPPSRECDFDKEHG 131
+R EER++RF N CR+G+ EI+ +A+GTN+QL FN + N Y ++CDF++E G
Sbjct: 70 ERAMEERRMRFVNDCRKGYAEISMVASGTNLQLYFN--ANHNPY---AQEQDCDFERERG 124
Query: 132 K 132
K
Sbjct: 125 K 125
>sp|Q13951|PEBB_HUMAN Core-binding factor subunit beta OS=Homo sapiens GN=CBFB PE=1 SV=2
Length = 182
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 69/94 (73%)
Query: 39 MPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIAT 98
MPRVVPDQ+SKFE++E FR+LSRE E++YTGFRDRP EERQ RFQN CR+G +EIAF+AT
Sbjct: 1 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVAT 60
Query: 99 GTNIQLVFNPSISANSYHMAPPSRECDFDKEHGK 132
GTN+ L F P+ P D ++E GK
Sbjct: 61 GTNLSLQFFPASWQGEQRQTPSREYVDLEREAGK 94
>sp|Q08024|PEBB_MOUSE Core-binding factor subunit beta OS=Mus musculus GN=Cbfb PE=1 SV=1
Length = 187
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 69/94 (73%)
Query: 39 MPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIAT 98
MPRVVPDQ+SKFE++E FR+LSRE E++YTGFRDRP EERQ RFQN CR+G +EIAF+AT
Sbjct: 1 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQTRFQNACRDGRSEIAFVAT 60
Query: 99 GTNIQLVFNPSISANSYHMAPPSRECDFDKEHGK 132
GTN+ L F P+ P D ++E GK
Sbjct: 61 GTNLSLQFFPASWQGEQRQTPSREYVDLEREAGK 94
>sp|B1H018|SECA_UNCTG Protein translocase subunit SecA OS=Uncultured termite group 1
bacterium phylotype Rs-D17 GN=secA PE=3 SV=1
Length = 860
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 29 EQPKPRFIFKMPRVVPDQKSKFESDELFR-RLSRESEVRY-TGFRDRPQEERQVRFQNGC 86
EQ P + M R+V Q D +R L ++R+ GFR Q++ +V +Q
Sbjct: 730 EQLTPELMLNMQRIVLLQMI----DSSWRDHLYELDQLRHDIGFRAYAQKDPKVEYQKES 785
Query: 87 REGHTEIAFIATGTNIQLVFNPSISANSYHMAPPSRECDFDKEHGKSVSRFNNALA 142
+ I+ +F I A MA + DF K GK +++ +N +
Sbjct: 786 FALFESMMNRVRDNTIEYIFKVQIDAKLQKMAIQTTNSDFRKNDGKKINKGSNKIG 841
>sp|P49985|RECA_RUMA7 Protein RecA OS=Ruminococcus albus (strain ATCC 27210 / DSM 20455 /
JCM 14654 / NCDO 2250 / 7) GN=recA PE=3 SV=2
Length = 398
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 117 MAPPSRECDFDKEHGKSVSRFNNAL 141
+APP +EC+FD +GK +SR L
Sbjct: 268 VAPPFKECEFDIMYGKGISRVGEVL 292
>sp|Q9UHV7|MED13_HUMAN Mediator of RNA polymerase II transcription subunit 13 OS=Homo
sapiens GN=MED13 PE=1 SV=3
Length = 2174
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 71 RDRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISAN----SYHMAPPSRECDF 126
+DR ER+ ++ +G + + ++ + +F+PSI + + H PPS +
Sbjct: 713 KDRQNSEREAGKKHKVEDGTSSVTVLSHEEDAMSLFSPSIKQDAPRPTSHARPPSTSLIY 772
Query: 127 DKEHGKSVSRFNN 139
D + S + +N
Sbjct: 773 DSDLAVSYTDLDN 785
>sp|Q6DRL4|TICRR_DANRE Treslin OS=Danio rerio GN=ticrr PE=2 SV=1
Length = 1824
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 26 GLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRL 59
G P+ + +FK P VP +KSK + + RRL
Sbjct: 1214 GKNSSPEEKIVFKTPDKVPQRKSKTSPEIILRRL 1247
>sp|Q6P9P0|F178A_MOUSE Protein FAM178A OS=Mus musculus GN=Fam178a PE=2 SV=2
Length = 1278
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 13 CAQLSGMLPFDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTGFRD 72
C LS LP G G+Y +++P+ + QK K +S E + L R RD
Sbjct: 135 CMSLSKYLP-KGAGIYAPSS----YRLPKEIKAQKKKHQSPERRKSLFIHESNREKNDRD 189
Query: 73 RPQEERQVRFQNGCREG 89
R + R Q EG
Sbjct: 190 RGKNSEDSRKQATATEG 206
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,851,165
Number of Sequences: 539616
Number of extensions: 2063211
Number of successful extensions: 4773
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4764
Number of HSP's gapped (non-prelim): 11
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)