Query psy445
Match_columns 142
No_of_seqs 34 out of 36
Neff 2.6
Searched_HMMs 46136
Date Fri Aug 16 17:24:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02312 CBF_beta: Core bindin 100.0 9.6E-55 2.1E-59 344.9 5.8 95 39-138 1-95 (169)
2 KOG4785|consensus 100.0 1.4E-48 3E-53 310.3 6.2 95 39-138 1-95 (177)
3 PF07436 Curto_V3: Curtovirus 47.5 6.4 0.00014 29.3 0.1 41 53-94 45-85 (87)
4 PF15559 DUF4660: Domain of un 32.3 21 0.00045 27.5 0.8 12 52-63 37-48 (108)
5 PF10148 SCHIP-1: Schwannomin- 27.7 42 0.00091 28.8 1.9 50 46-109 3-57 (238)
6 PF00402 Calponin: Calponin fa 22.7 38 0.00082 20.3 0.5 15 10-24 7-21 (26)
7 KOG1687|consensus 22.3 38 0.00081 27.8 0.6 15 26-40 91-106 (168)
8 PLN02625 uroporphyrin-III C-me 21.1 1.8E+02 0.004 23.5 4.4 48 54-102 53-104 (263)
9 COG0377 NuoB NADH:ubiquinone o 21.0 41 0.00088 28.3 0.6 62 26-88 95-162 (194)
10 PF06697 DUF1191: Protein of u 21.0 1.3E+02 0.0028 26.3 3.6 44 91-136 127-170 (278)
11 PF12763 EF-hand_4: Cytoskelet 20.5 26 0.00057 25.6 -0.5 21 39-61 1-21 (104)
No 1
>PF02312 CBF_beta: Core binding factor beta subunit; InterPro: IPR003417 Core binding factor (CBF) is a heterodimeric transcription factor essential for genetic regulation of hematopoiesis and osteogenesis. The beta subunit binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including Murine leukemia virus, Polyomavirus enhancer, T-cell receptor enhancers etc. The beta subunit enhances DNA-binding ability of the alpha subunit in vitro, and has been show to have a structure related to the OB fold []. Also included in this family are the Drosophila melanogaster brother and big brother proteins, which regulate the DNA-binding properties of Runt.; GO: 0003713 transcription coactivator activity, 0005634 nucleus; PDB: 2JHB_A 1IO4_D 1ILF_A 1CL3_A 1H9D_B 1E50_H.
Probab=100.00 E-value=9.6e-55 Score=344.89 Aligned_cols=95 Identities=69% Similarity=1.089 Sum_probs=84.3
Q ss_pred cCcccCcccccccchHHHHhhhccccceecccCCCChHHHHHHhhhhccCCceeEEEeeecceeEEEeccccCCCCCCCC
Q psy445 39 MPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMA 118 (142)
Q Consensus 39 MPRVVPDQK~KFEsDElFRrLSREsEIrYTGfrDRp~eERq~RFq~~CReGh~eiaFvaTGtNl~L~F~p~~~~~~~~~~ 118 (142)
|||||||||+||||||||||||||||||||||||||+||||+||||+||+||+|||||||||||+|+|+|++|....
T Consensus 1 MpRvvpdQk~kFEsde~frkLSresEikytg~rdrp~eER~~rF~~~creg~~eiaF~~tGtNl~L~f~~~~~~~~~--- 77 (169)
T PF02312_consen 1 MPRVVPDQKSKFESDELFRKLSRESEIKYTGFRDRPHEERQMRFQNSCREGHAEIAFVATGTNLQLQFFPASWGYEE--- 77 (169)
T ss_dssp --SS-TTHHHHHHH-HHHHHHHSCEEEEE-TCCSS-HHHHHHHHHHHHHCTEEEEEETTTTEEEEEESS-TTSSSSS---
T ss_pred CCccccchhhcccchHHHHHhccchhhcccccccCCcHHHHHHHHHhhhcCceeEEEEeccccceEeeccccCCCcc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999775543
Q ss_pred CCCCCccccCCCceeEeecc
Q psy445 119 PPSRECDFDKEHGKSVSRFN 138 (142)
Q Consensus 119 ~~~~~~DFdkE~GKVhlk~~ 138 (142)
+++||||||+|||||+|+
T Consensus 78 --~~~~df~~e~GKV~l~s~ 95 (169)
T PF02312_consen 78 --DEYCDFEKEPGKVHLKSP 95 (169)
T ss_dssp --TTTCESSTTTTCEEEEEE
T ss_pred --cccccccccccceEeecc
Confidence 589999999999999986
No 2
>KOG4785|consensus
Probab=100.00 E-value=1.4e-48 Score=310.34 Aligned_cols=95 Identities=59% Similarity=0.990 Sum_probs=91.6
Q ss_pred cCcccCcccccccchHHHHhhhccccceecccCCCChHHHHHHhhhhccCCceeEEEeeecceeEEEeccccCCCCCCCC
Q psy445 39 MPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMA 118 (142)
Q Consensus 39 MPRVVPDQK~KFEsDElFRrLSREsEIrYTGfrDRp~eERq~RFq~~CReGh~eiaFvaTGtNl~L~F~p~~~~~~~~~~ 118 (142)
|||||||||||||||||||||||+|||||||||+|||||||.||+|.||+||+||+||||||||+|+|+.+ +.+.
T Consensus 1 MpRvvpDQ~SkFe~Deffr~LSre~E~kytgfr~rp~eERqeRF~n~cr~g~~e~sFvatGtNl~l~f~~~-----q~qt 75 (177)
T KOG4785|consen 1 MPRVVPDQRSKFENDEFFRKLSRECEIKYTGFRDRPHEERQERFQNACRDGRSEIAFVATGTNLSLQFFGE-----QRQT 75 (177)
T ss_pred CCccccchhcccchHHHHHHhhhhhhheecccccCchHHHHHHHHHHhhcCCceeeEEeecCceeEEEeec-----cCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988 5566
Q ss_pred CCCCCccccCCCceeEeecc
Q psy445 119 PPSRECDFDKEHGKSVSRFN 138 (142)
Q Consensus 119 ~~~~~~DFdkE~GKVhlk~~ 138 (142)
+++++|||+||+||||||+.
T Consensus 76 ~~~e~~d~~re~gkv~~k~p 95 (177)
T KOG4785|consen 76 PSREYVDLEREAGKVYLKAP 95 (177)
T ss_pred CcchhhhhhhhcCceecccc
Confidence 68999999999999999985
No 3
>PF07436 Curto_V3: Curtovirus V3 protein; InterPro: IPR009997 This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.
Probab=47.50 E-value=6.4 Score=29.29 Aligned_cols=41 Identities=37% Similarity=0.513 Sum_probs=32.1
Q ss_pred hHHHHhhhccccceecccCCCChHHHHHHhhhhccCCceeEE
Q psy445 53 DELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIA 94 (142)
Q Consensus 53 DElFRrLSREsEIrYTGfrDRp~eERq~RFq~~CReGh~eia 94 (142)
||||-++-.--=.|| --|+|..+-|+.|=+.+..||.-|++
T Consensus 45 DeLFl~iQQvvy~R~-~sr~r~vd~RrRrgLS~iPEGsEE~~ 85 (87)
T PF07436_consen 45 DELFLKIQQVVYTRY-PSRDRAVDSRRRRGLSSIPEGSEEVA 85 (87)
T ss_pred HHHHHHHHHhheecc-CccccccCcccccCccCCCCCchhhh
Confidence 788888864333344 34899999999999999999988875
No 4
>PF15559 DUF4660: Domain of unknown function (DUF4660)
Probab=32.34 E-value=21 Score=27.53 Aligned_cols=12 Identities=58% Similarity=0.930 Sum_probs=10.6
Q ss_pred chHHHHhhhccc
Q psy445 52 SDELFRRLSRES 63 (142)
Q Consensus 52 sDElFRrLSREs 63 (142)
-|||||+.||.+
T Consensus 37 PDeLFrsVsrPa 48 (108)
T PF15559_consen 37 PDELFRSVSRPA 48 (108)
T ss_pred HHHHHhhcCccc
Confidence 399999999975
No 5
>PF10148 SCHIP-1: Schwannomin-interacting protein 1; InterPro: IPR015649 SCHIP-1 is a coiled-coil protein that specifically associates with schwannomin in vitro and in vivo. The product of the neurofibromatosis type 2 (NF2) tumour suppressor gene, known as schwannomin or merlin, is involved in NF2-associated and sporadic schwannomas and meningiomas. It is closely related to the ezrin-radixin-moesin family members, which link membrane proteins to the cytoskeleton. Association with SCHIP-1 can be observed only with some naturally occurring mutants of schwannomin, or a schwannomin spliced isoform lacking exons 2 and 3, but not with the schwannomin isoform exhibiting growth-suppressive activity []. This entry consists of mammalian SCHIP-1 proteins from Mus musculus (Mouse) and Homo sapiens (Human).
Probab=27.70 E-value=42 Score=28.77 Aligned_cols=50 Identities=26% Similarity=0.341 Sum_probs=33.5
Q ss_pred ccccccchHHHHhhhccc-----cceecccCCCChHHHHHHhhhhccCCceeEEEeeecceeEEEeccc
Q psy445 46 QKSKFESDELFRRLSRES-----EVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPS 109 (142)
Q Consensus 46 QK~KFEsDElFRrLSREs-----EIrYTGfrDRp~eERq~RFq~~CReGh~eiaFvaTGtNl~L~F~p~ 109 (142)
|-.++|-+|+=|||+=.+ .++|||++.-.-..-+ +=+.+|-|||.-|-.-
T Consensus 3 ~~~r~eREeIrrrlA~g~~~ed~~~~yt~~~~~~k~sl~--------------~RLqsgmNLQVCFmNE 57 (238)
T PF10148_consen 3 QAQRNEREEIRRRLAMGSFAEDNWEKYTSSSKSGKPSLS--------------SRLQSGMNLQVCFMNE 57 (238)
T ss_pred ccccccHHHHHHHHhcCCcccccceeccccccCCCcccc--------------cccCCCceeeEEeecC
Confidence 556889999999998544 4677776533222222 2356888999888665
No 6
>PF00402 Calponin: Calponin family repeat; InterPro: IPR000557 Calponin [, ] is a thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction. It is capable of binding to actin, calmodulin, troponin C and tropomyosin. The interaction of calponin with actin inhibits the actomyosin MgATPase activity. Calponin is a basic protein of approximately 34 Kd. Multiple isoforms are found in smooth muscles. Calponin contains three repeats of a well conserved 26 amino acid domain. Such a domain is also found in vertebrate smooth muscle protein (SM22 or transgelin), and a number of other proteins whose physiological role is not yet established, including Drosophila synchronous flight muscle protein SM20, Caenorhabditis elegans unc-87 protein [], rat neuronal protein NP25 [], and an Onchocerca volvulus antigen [].
Probab=22.70 E-value=38 Score=20.26 Aligned_cols=15 Identities=40% Similarity=0.545 Sum_probs=12.3
Q ss_pred hhhhhhcCCCccCCc
Q psy445 10 TDRCAQLSGMLPFDG 24 (142)
Q Consensus 10 ~~~~~~~~~m~p~~~ 24 (142)
|..||++.||.+|-+
T Consensus 7 tNk~aSQ~Gmt~~G~ 21 (26)
T PF00402_consen 7 TNKGASQSGMTAFGT 21 (26)
T ss_pred ccccccccCCccCCC
Confidence 678999999988753
No 7
>KOG1687|consensus
Probab=22.33 E-value=38 Score=27.80 Aligned_cols=15 Identities=40% Similarity=1.010 Sum_probs=13.0
Q ss_pred ccccC-CCCceeeecC
Q psy445 26 GLYEQ-PKPRFIFKMP 40 (142)
Q Consensus 26 ~~yeq-p~prfifkMP 40 (142)
-+||| |.||++..|-
T Consensus 91 kvYdQMPEpr~VisMG 106 (168)
T KOG1687|consen 91 KVYDQMPEPRWVISMG 106 (168)
T ss_pred HHHhhCCCCeeEEEec
Confidence 47999 9999999985
No 8
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=21.14 E-value=1.8e+02 Score=23.53 Aligned_cols=48 Identities=19% Similarity=0.374 Sum_probs=28.3
Q ss_pred HHHHhhhccccceecc----cCCCChHHHHHHhhhhccCCceeEEEeeeccee
Q psy445 54 ELFRRLSRESEVRYTG----FRDRPQEERQVRFQNGCREGHTEIAFIATGTNI 102 (142)
Q Consensus 54 ElFRrLSREsEIrYTG----frDRp~eERq~RFq~~CReGh~eiaFvaTGtNl 102 (142)
++.+-+....++.+.| +.++..++.-...+..+.+|. .++++++|..+
T Consensus 53 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~-~Vvvl~~GDP~ 104 (263)
T PLN02625 53 DILDLVPPGAELLYVGKRGGYHSRTQEEIHELLLSFAEAGK-TVVRLKGGDPL 104 (263)
T ss_pred HHHHhcCCCCEEEecCCcCCccccCHHHHHHHHHHHHHCCC-eEEEEcCCCch
Confidence 4444444455555433 445555555455666777776 68888888654
No 9
>COG0377 NuoB NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Energy production and conversion]
Probab=21.02 E-value=41 Score=28.28 Aligned_cols=62 Identities=19% Similarity=0.401 Sum_probs=32.8
Q ss_pred ccccC-CCCceeeecCcccCcccccccc-hHHHHhhhc--cccceecccCCCChHHHH--HHhhhhccC
Q psy445 26 GLYEQ-PKPRFIFKMPRVVPDQKSKFES-DELFRRLSR--ESEVRYTGFRDRPQEERQ--VRFQNGCRE 88 (142)
Q Consensus 26 ~~yeq-p~prfifkMPRVVPDQK~KFEs-DElFRrLSR--EsEIrYTGfrDRp~eERq--~RFq~~CRe 88 (142)
-+||| |.|+|+..|=.- ..+=+-|-+ =-.-+-+-+ +-+|---|+--||+.==+ ...|.-.+.
T Consensus 95 ~~YdQMPePK~VIsMGsC-a~~GG~f~~sYsvV~g~D~~vPVDvyIPGCPPrPEAl~~gi~~Lq~KI~~ 162 (194)
T COG0377 95 RVYDQMPEPKWVISMGSC-ANSGGMYWNSYSVVQGVDRVVPVDVYIPGCPPRPEALLYGILLLQEKIRR 162 (194)
T ss_pred HHHHhCCCCcEEEEeccc-ccCCCcccccceeeeccceeEeeeeecCCCCCCHHHHHHHHHHHHHHHHh
Confidence 37999 999999998542 233333331 111111111 234555677777765443 355555554
No 10
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=20.96 E-value=1.3e+02 Score=26.31 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=29.6
Q ss_pred eeEEEeeecceeEEEeccccCCCCCCCCCCCCCccccCCCceeEee
Q psy445 91 TEIAFIATGTNIQLVFNPSISANSYHMAPPSRECDFDKEHGKSVSR 136 (142)
Q Consensus 91 ~eiaFvaTGtNl~L~F~p~~~~~~~~~~~~~~~~DFdkE~GKVhlk 136 (142)
-||.+.|+|.++...|....-...... ..-.|+-||.. |+++++
T Consensus 127 ~el~l~a~~~PI~V~F~~~~~~~~~~~-~~~~Cv~F~~~-G~~~~~ 170 (278)
T PF06697_consen 127 PELSLRASGKPILVDFSNVSPAPQPGM-SVPKCVTFDLD-GSVTFS 170 (278)
T ss_pred ceeeeeccCCcEEEEecCCccCCCccc-ccceEEEEcCC-CcEEEe
Confidence 589999999999999955422222221 22269999876 588754
No 11
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=20.52 E-value=26 Score=25.63 Aligned_cols=21 Identities=33% Similarity=0.923 Sum_probs=14.9
Q ss_pred cCcccCcccccccchHHHHhhhc
Q psy445 39 MPRVVPDQKSKFESDELFRRLSR 61 (142)
Q Consensus 39 MPRVVPDQK~KFEsDElFRrLSR 61 (142)
|||+=+++|+||. .+|..|..
T Consensus 1 ~~~ls~~e~~~y~--~~F~~l~~ 21 (104)
T PF12763_consen 1 MPKLSPEEKQKYD--QIFQSLDP 21 (104)
T ss_dssp ----SCCHHHHHH--HHHHCTSS
T ss_pred CCCCCHHHHHHHH--HHHHhcCC
Confidence 8999999999995 79998874
Done!