Query psy445
Match_columns 142
No_of_seqs 34 out of 36
Neff 2.6
Searched_HMMs 29240
Date Fri Aug 16 17:25:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy445.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/445hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e50_B Core-binding factor CBF 100.0 3.1E-58 1E-62 353.3 6.0 99 40-138 1-99 (134)
2 3ifu_A Non-structural protein; 29.9 23 0.00078 28.1 1.8 36 10-45 25-67 (180)
3 1s4d_A Uroporphyrin-III C-meth 18.9 79 0.0027 24.5 3.0 43 59-102 58-104 (280)
4 2hhi_A Antigen MPT64, immunoge 17.7 71 0.0024 23.4 2.3 59 75-133 46-117 (204)
5 1vpy_A Protein (hypothetical p 17.6 77 0.0026 25.4 2.7 16 33-48 71-86 (289)
6 2c5z_A SET domain protein 2; S 17.3 22 0.00074 26.2 -0.6 24 40-63 22-50 (104)
7 3rqz_A Metallophosphoesterase; 15.7 90 0.0031 23.0 2.5 35 103-137 183-217 (246)
8 2ybo_A Methyltransferase; SUMT 15.2 1.6E+02 0.0054 23.1 3.9 50 52-102 61-114 (294)
9 1vpq_A Hypothetical protein TM 15.1 45 0.0015 26.6 0.7 27 33-59 79-107 (273)
10 3hh1_A Tetrapyrrole methylase 14.8 2.2E+02 0.0077 19.0 4.1 47 53-102 44-92 (117)
No 1
>1e50_B Core-binding factor CBF-beta; transcription factor, transcription; 2.60A {Homo sapiens} SCOP: b.54.1.1 PDB: 1h9d_B* 1ilf_A 1io4_D 2jhb_A 1cl3_A
Probab=100.00 E-value=3.1e-58 Score=353.35 Aligned_cols=99 Identities=56% Similarity=0.954 Sum_probs=94.0
Q ss_pred CcccCcccccccchHHHHhhhccccceecccCCCChHHHHHHhhhhccCCceeEEEeeecceeEEEeccccCCCCCCCCC
Q psy445 40 PRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMAP 119 (142)
Q Consensus 40 PRVVPDQK~KFEsDElFRrLSREsEIrYTGfrDRp~eERq~RFq~~CReGh~eiaFvaTGtNl~L~F~p~~~~~~~~~~~ 119 (142)
||||||||+||||||||||||||||||||||||||+||||+||||+|||||+||||||||||++|+|+|++|+++.+++|
T Consensus 1 PRVvpdQk~kFEsDelfrkLsresEikytgfrdrp~eERr~rF~~~creg~~eiaFv~tGtNl~L~f~~~~~~~~~~~~~ 80 (134)
T 1e50_B 1 PRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTP 80 (134)
T ss_dssp CCCCSCHHHHHHHCHHHHTTSSCEEEEECTTSSSCHHHHHHHHHHHHHTTEEEEEETTTTBCCEEECSCTTC----CCCC
T ss_pred CcccchhhhcccchHHHHHhcccceeeeeccccCChHHHHHHHHHhhhcCceEEEEEecccceeEEeccccccccCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCceeEeecc
Q psy445 120 PSRECDFDKEHGKSVSRFN 138 (142)
Q Consensus 120 ~~~~~DFdkE~GKVhlk~~ 138 (142)
++++||||||+|||||||.
T Consensus 81 ~~~~~dfdke~gkV~~~S~ 99 (134)
T 1e50_B 81 SREYVDLEREAGKVYLKAP 99 (134)
T ss_dssp CTTTEESSSSTTEEEEEEE
T ss_pred chhhcccccCCceEEEEcc
Confidence 9999999999999999995
No 2
>3ifu_A Non-structural protein; PRRSV, NSP1, zinc finger, papain-like cysteine protease, transcription; 2.42A {Porcine reproductive and respiratorysyndrome virus}
Probab=29.94 E-value=23 Score=28.08 Aligned_cols=36 Identities=28% Similarity=0.720 Sum_probs=31.1
Q ss_pred hhhhhhcCCCcc-------CCccccccCCCCceeeecCcccCc
Q psy445 10 TDRCAQLSGMLP-------FDGIGLYEQPKPRFIFKMPRVVPD 45 (142)
Q Consensus 10 ~~~~~~~~~m~p-------~~~~~~yeqp~prfifkMPRVVPD 45 (142)
-.||++.-..|| ..++|||-.|.--+-||.|+-+|.
T Consensus 25 ctrclsar~llpl~lq~~~lga~glfyrp~~~l~w~~p~~~p~ 67 (180)
T 3ifu_A 25 CTRCLSARSLLPLNLQVPELGVLGLFYRPEEPLRWTLPRAFPT 67 (180)
T ss_dssp ETTTCCBCCCCCSSSCCTTBTTGGGTCCCSSCCSSCBCCCCCC
T ss_pred eeehhcccccCChhhcCCccceeeeeeccCCCccccccccccc
Confidence 368999999998 457899999999999999998884
No 3
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=18.92 E-value=79 Score=24.54 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=29.2
Q ss_pred hhccccceeccc----CCCChHHHHHHhhhhccCCceeEEEeeeccee
Q psy445 59 LSRESEVRYTGF----RDRPQEERQVRFQNGCREGHTEIAFIATGTNI 102 (142)
Q Consensus 59 LSREsEIrYTGf----rDRp~eERq~RFq~~CReGh~eiaFvaTGtNl 102 (142)
+....|+.|.|- .....+|.........++|. .++++++|..+
T Consensus 58 ~~~~~~~~~~~k~~~~~~~~~~~i~~~l~~~~~~G~-~Vv~L~~GDP~ 104 (280)
T 1s4d_A 58 ARPGAVLEFAGKRGGKPSPKQRDISLRLVELARAGN-RVLRLKGGDPF 104 (280)
T ss_dssp SSTTCCEEECSCCC--CCCCHHHHHHHHHHHHHTTC-CEEEEESBCTT
T ss_pred ccCCCEEEeccccccccccCHHHHHHHHHHHHhCCC-eEEEEcCCCCc
Confidence 334566667653 45566777677777778886 58999888654
No 4
>2hhi_A Antigen MPT64, immunogenic protein MPT64; secreted antigen, residual dipolar COUP solution structure, beta-grAsp, unknown function; NMR {Mycobacterium tuberculosis}
Probab=17.67 E-value=71 Score=23.40 Aligned_cols=59 Identities=14% Similarity=0.215 Sum_probs=38.1
Q ss_pred hHHHHHHhhhhccC-----CceeE--E---Eeee---cceeEEEeccccCCCCCCCCCCCCCccccCCCcee
Q psy445 75 QEERQVRFQNGCRE-----GHTEI--A---FIAT---GTNIQLVFNPSISANSYHMAPPSRECDFDKEHGKS 133 (142)
Q Consensus 75 ~eERq~RFq~~CRe-----Gh~ei--a---FvaT---GtNl~L~F~p~~~~~~~~~~~~~~~~DFdkE~GKV 133 (142)
.++....|.+.+.+ +..++ . +..+ +.=++|.+.-..+.++.|.........||+..||+
T Consensus 46 i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSi~~~~y~y~GGAHg~~~~~~~n~D~~~gk~ 117 (204)
T 2hhi_A 46 IAQTRDKFLSAATSSTPREAPYELNITSATYQSAIPPRGTQAVVLKVYQNAGGTHPTTTYKAFDWDQAYRKP 117 (204)
T ss_dssp HHHHHHHHHHHHTTSCCCSSSCEEEEEEEEEECCCSSCCEEEEEEEEEEEBTTTBCCEEEEEEEEETTTTEE
T ss_pred HHHHHHHHHHhhccccCCCCCcEEEEEEEEEEeecCCCCEEEEEEEEEEECCCCCCcceEEEEEEECCCCCE
Confidence 34555678777743 22222 2 2222 44477888777777777766777899999999985
No 5
>1vpy_A Protein (hypothetical protein EF0366); TIM alpha/beta barrel fold, structural genomics, joint cente structural genomics, JCSG; 2.52A {Enterococcus faecalis} SCOP: c.1.32.1 PDB: 1ztv_A
Probab=17.62 E-value=77 Score=25.43 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.9
Q ss_pred CceeeecCcccCcccc
Q psy445 33 PRFIFKMPRVVPDQKS 48 (142)
Q Consensus 33 prfifkMPRVVPDQK~ 48 (142)
=||.+|.||.+.++|.
T Consensus 71 F~F~vKa~r~iTH~~r 86 (289)
T 1vpy_A 71 FRFVMKVYSGISCQGE 86 (289)
T ss_dssp CEEEEECCTTTTTCSC
T ss_pred cEEEEEechheecccc
Confidence 4788899999999975
No 6
>2c5z_A SET domain protein 2; SRI domain, RNA polymerase II, transcription, CTD, SET2 histone methyltransferase; NMR {Saccharomyces cerevisiae}
Probab=17.34 E-value=22 Score=26.25 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=19.6
Q ss_pred CcccCcccccccch-----HHHHhhhccc
Q psy445 40 PRVVPDQKSKFESD-----ELFRRLSRES 63 (142)
Q Consensus 40 PRVVPDQK~KFEsD-----ElFRrLSREs 63 (142)
..|||++=.|||+| |-++.-+||.
T Consensus 22 A~~VPN~ikKYe~e~~igrDniK~CArdi 50 (104)
T 2c5z_A 22 ASFVPNLIKKNPQSKQFDHENIKQCAKDI 50 (104)
T ss_dssp HHHHHHHHHTSTTTTTCCHHHHHHHHHHH
T ss_pred HHHhHHHHHhhhhccccchHHHHHHHHHH
Confidence 46899999999999 7777777763
No 7
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=15.74 E-value=90 Score=22.95 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=24.6
Q ss_pred EEEeccccCCCCCCCCCCCCCccccCCCceeEeec
Q psy445 103 QLVFNPSISANSYHMAPPSRECDFDKEHGKSVSRF 137 (142)
Q Consensus 103 ~L~F~p~~~~~~~~~~~~~~~~DFdkE~GKVhlk~ 137 (142)
.+..||.|...+.+..|.-.|+=+|.+.++|.++.
T Consensus 183 ~~ivNpGSVG~Prdg~p~A~Y~i~d~~~~~v~~~r 217 (246)
T 3rqz_A 183 RYIINPGAVGQPRDGDPRASYAIFEPDAQRVTFHR 217 (246)
T ss_dssp CEEEEECCSSCCCSSCCSEEEEEEEGGGTEEEEEE
T ss_pred eEEEECCccCCCCCcCCcceEEEEECCCCEEEEEE
Confidence 67789997766555555556777777777887753
No 8
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH; 2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Probab=15.24 E-value=1.6e+02 Score=23.12 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=31.2
Q ss_pred chHHHHhhhccccceecc----cCCCChHHHHHHhhhhccCCceeEEEeeeccee
Q psy445 52 SDELFRRLSRESEVRYTG----FRDRPQEERQVRFQNGCREGHTEIAFIATGTNI 102 (142)
Q Consensus 52 sDElFRrLSREsEIrYTG----frDRp~eERq~RFq~~CReGh~eiaFvaTGtNl 102 (142)
+.++...+..+.|+.|.| +.....+|.........++|. .++++.+|..+
T Consensus 61 ~~~il~~~~~~~~~i~~~k~~~~~~~~~~~i~~~l~~~~~~G~-~Vv~L~~GDP~ 114 (294)
T 2ybo_A 61 ARELIALLPESCQRIYVGKRCGHHSLPQEEINELLVRLARQQR-RVVRLKGGDPF 114 (294)
T ss_dssp CHHHHHHSCTTSEEEECC--------CHHHHHHHHHHHHHTTC-CEEEEEEBCTT
T ss_pred CHHHHHhcccCCeEEecccccccccCCHHHHHHHHHHHHHCCC-eEEEEcCCCCC
Confidence 345555555667777765 334455666566777777886 58899888654
No 9
>1vpq_A Hypothetical protein TM1631; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.1.32.1
Probab=15.08 E-value=45 Score=26.65 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=19.1
Q ss_pred CceeeecCcccCccccc--ccchHHHHhh
Q psy445 33 PRFIFKMPRVVPDQKSK--FESDELFRRL 59 (142)
Q Consensus 33 prfifkMPRVVPDQK~K--FEsDElFRrL 59 (142)
=||.+|.||.+.++|.+ .|++|.+++.
T Consensus 79 F~F~vKa~r~iTh~~~~~~~~~~~~~~~F 107 (273)
T 1vpq_A 79 FYFTVKTPGSVTHVLWKEGKDPKEDMENF 107 (273)
T ss_dssp CEEEEECCHHHHHTHHHHTCCSHHHHHHH
T ss_pred eEEEEEeChhhcccccccccchHHHHHHH
Confidence 47888999999998653 5556654443
No 10
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=14.77 E-value=2.2e+02 Score=19.02 Aligned_cols=47 Identities=17% Similarity=0.300 Sum_probs=30.8
Q ss_pred hHHHHhhhcc-ccceecccCCCChHHHHHHhhhhccCCceeEEEee-eccee
Q psy445 53 DELFRRLSRE-SEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIA-TGTNI 102 (142)
Q Consensus 53 DElFRrLSRE-sEIrYTGfrDRp~eERq~RFq~~CReGh~eiaFva-TGtNl 102 (142)
.++.+.+..+ .++. .|.....+|+-.......++|+ .+++++ +|...
T Consensus 44 ~~~l~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~G~-~V~~l~d~GdP~ 92 (117)
T 3hh1_A 44 SILLKHFGIEGKRLV--SYHSFNEERAVRQVIELLEEGS-DVALVTDAGTPA 92 (117)
T ss_dssp HHHHHHTTCCSCCEE--ECCSTTHHHHHHHHHHHHHTTC-CEEEEEETTSCG
T ss_pred HHHHHHhCCCCCEEe--ccCCccHHHHHHHHHHHHHCCC-eEEEEecCCcCe
Confidence 3555555333 4443 3445666777788888888887 599999 67643
Done!