RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy445
(142 letters)
>1e50_B Core-binding factor CBF-beta; transcription factor, transcription;
2.60A {Homo sapiens} SCOP: b.54.1.1 PDB: 1h9d_B* 1ilf_A
1io4_D 2jhb_A 1cl3_A
Length = 134
Score = 152 bits (384), Expect = 1e-48
Identities = 55/93 (59%), Positives = 68/93 (73%)
Query: 40 PRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATG 99
PRVVPDQ+SKFE++E FR+LSRE E++YTGFRDRP EERQ RFQN CR+G +EIAF+ATG
Sbjct: 1 PRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATG 60
Query: 100 TNIQLVFNPSISANSYHMAPPSRECDFDKEHGK 132
TN+ L F P+ P D ++E GK
Sbjct: 61 TNLSLQFFPASWQGEQRQTPSREYVDLEREAGK 93
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.001
Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 46/139 (33%)
Query: 1 MLSMNDPS---LTDRCAQLSGMLPFDG---IGLYEQPKPRFIFKMPRVV---PDQKSKFE 51
MLS+++ + + D + + LP I L K VV P +S +
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK-NL------VVSGPP--QSLYG 388
Query: 52 SDELFRRLSRESEVRYTGFRDR-PQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSI 110
+ R+ S + + R P ER+++F N F P +
Sbjct: 389 LNLTLRKAKAPSGLD----QSRIPFSERKLKFSN--------------------RFLP-V 423
Query: 111 SA--NSYHMAPPSRECDFD 127
++ +S+ + P S + D
Sbjct: 424 ASPFHSHLLVPASDLINKD 442
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 1.8
Identities = 20/113 (17%), Positives = 34/113 (30%), Gaps = 25/113 (22%)
Query: 34 RFIFKMPRVVPDQKSKFESDELFRRLSRESEVRY--TGFRDRPQEERQVRFQNGCREGHT 91
+ + MP+ + SK E D + S + +E Q +F
Sbjct: 36 KDVQDMPKSI---LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ-KFVEEVLR--I 89
Query: 92 EIAFIATGTNIQLVFN-PSISANSY-------HMAPPSRECDFDKEHGKSVSR 136
F+ + I+ PS+ Y + F K + VSR
Sbjct: 90 NYKFLM--SPIKTEQRQPSMMTRMYIEQRDRLYNDNQV----FAKYN---VSR 133
>1xp8_A RECA protein, recombinase A; recombination, radioresistance,
DNA-repair, ATPase, DNA-BIND protein, DNA binding
protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP:
c.37.1.11 d.48.1.1
Length = 366
Score = 26.6 bits (59), Expect = 3.2
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 117 MAPPSRECDFDKEHGKSVSR 136
+A P +E + +GK +
Sbjct: 267 VAAPFKEVELALVYGKGFDQ 286
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants,
DNA-repair, ATP-binding, DNA DA recombination, DNA
repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium
smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A*
1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A
2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A*
2zrp_A* 2zre_A* ...
Length = 349
Score = 26.5 bits (59), Expect = 3.2
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 117 MAPPSRECDFDKEHGKSVSR 136
++PP ++ +FD +G+ +SR
Sbjct: 253 VSPPFKQAEFDILYGQGISR 272
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate
binding, plant cell WALL degradation, hydrolase,
cellulases; 1.80A {Cellvibrio japonicus}
Length = 347
Score = 26.8 bits (58), Expect = 3.2
Identities = 5/55 (9%), Positives = 14/55 (25%), Gaps = 5/55 (9%)
Query: 63 SEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHM 117
++ G + G ++ I G+ + S + +
Sbjct: 18 PHIQVMGRTHINDDASLTFGYPG-----VSLSTIVAGSRLTAEMQSSNGNSWIDV 67
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding,
cytoplasm, damage, DNA recombination, DNA repair,
DNA-binding; 1.95A {Thermotoga maritima}
Length = 356
Score = 26.5 bits (59), Expect = 3.3
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 117 MAPPSRECDFDKEHGKSVSR 136
+APP + +GK + R
Sbjct: 253 VAPPFKTAQTYIIYGKGIDR 272
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA
repair, DNA binding protein; 1.90A {Escherichia coli}
SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A*
1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Length = 356
Score = 26.5 bits (59), Expect = 3.3
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 117 MAPPSRECDFDKEHGKSVSR 136
+A P ++ +F +G+ ++
Sbjct: 255 IAAPFKQAEFQILYGEGINF 274
>3cmu_A Protein RECA, recombinase A; homologous recombination,
recombination/DNA complex; HET: DNA ADP; 4.20A
{Escherichia coli}
Length = 2050
Score = 26.6 bits (59), Expect = 3.9
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 117 MAPPSRECDFDKEHGKSVSR 136
+A P ++ +F +G+ ++
Sbjct: 575 IAAPFKQAEFQILYGEGINF 594
Score = 26.6 bits (59), Expect = 3.9
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 117 MAPPSRECDFDKEHGKSVSR 136
+A P ++ +F +G+ ++
Sbjct: 924 IAAPFKQAEFQILYGEGINF 943
Score = 26.6 bits (59), Expect = 3.9
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 117 MAPPSRECDFDKEHGKSVSR 136
+A P ++ +F +G+ ++
Sbjct: 1273 IAAPFKQAEFQILYGEGINF 1292
Score = 26.6 bits (59), Expect = 3.9
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 117 MAPPSRECDFDKEHGKSVSR 136
+A P ++ +F +G+ ++
Sbjct: 1619 IAAPFKQAEFQILYGEGINF 1638
Score = 26.6 bits (59), Expect = 3.9
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 117 MAPPSRECDFDKEHGKSVSR 136
+A P ++ +F +G+ ++
Sbjct: 1967 IAAPFKQAEFQILYGEGINF 1986
Score = 26.6 bits (59), Expect = 4.0
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 117 MAPPSRECDFDKEHGKSVSR 136
+A P ++ +F +G+ ++
Sbjct: 226 IAAPFKQAEFQILYGEGINF 245
>3cmw_A Protein RECA, recombinase A; homologous recombination,
recombination/DNA complex; HET: DNA ADP; 2.80A
{Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Length = 1706
Score = 26.2 bits (58), Expect = 4.4
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 117 MAPPSRECDFDKEHGKSVSR 136
+A P ++ +F +G+ ++
Sbjct: 575 IAAPFKQAEFQILYGEGINF 594
Score = 26.2 bits (58), Expect = 4.4
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 117 MAPPSRECDFDKEHGKSVSR 136
+A P ++ +F +G+ ++
Sbjct: 1274 IAAPFKQAEFQILYGEGINF 1293
Score = 26.2 bits (58), Expect = 4.5
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 117 MAPPSRECDFDKEHGKSVSR 136
+A P ++ +F +G+ ++
Sbjct: 924 IAAPFKQAEFQILYGEGINF 943
Score = 26.2 bits (58), Expect = 4.5
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 117 MAPPSRECDFDKEHGKSVSR 136
+A P ++ +F +G+ ++
Sbjct: 1623 IAAPFKQAEFQILYGEGINF 1642
Score = 26.2 bits (58), Expect = 4.6
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 117 MAPPSRECDFDKEHGKSVSR 136
+A P ++ +F +G+ ++
Sbjct: 226 IAAPFKQAEFQILYGEGINF 245
>1r75_A Hypothetical protein; structural genomics, unknown function, PSI,
protein structur initiative; 1.86A {Leishmania major}
SCOP: b.134.1.1
Length = 141
Score = 25.4 bits (55), Expect = 5.7
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 29 EQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQ 83
E F P V + S+ L+R E R+ + D + V
Sbjct: 16 EAAPVTFKNGKPTVKGTKTYPMFSNILYRIADTE-ARRWAFYNDSKELIIHVAVL 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.405
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,132,309
Number of extensions: 112269
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 21
Length of query: 142
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 58
Effective length of database: 4,356,429
Effective search space: 252672882
Effective search space used: 252672882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.8 bits)