BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4451
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPES- 65
G++ L A+ N++ +VK LL R G+ H+ + L + + S
Sbjct: 178 NGLTPLHVAVHHNNLDIVKLLLP------RGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231
Query: 66 -EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLER 101
++ G N+ + +TPL LAAQ G E+VALLL +
Sbjct: 232 LQYGGSANAESV-QGVTPLHLAAQEGHAEMVALLLSK 267
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 33.9 bits (76), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 39 ALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVAL 97
ALH A Q I+K ++ + +K + + G TP+ LAAQ GR+E+V
Sbjct: 282 ALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGK----------TPIXLAAQEGRIEVVXY 331
Query: 98 LLERGHCIPYPHLPTCQCVQVCQNTDNLN 126
L+++G + Q+ Q ++ N
Sbjct: 332 LIQQGASVEAVDATDHTARQLAQANNHHN 360
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 17/103 (16%)
Query: 6 FQGVSALQTAIIKNDVMMVKYLL---SLPSIKVRDG--ALH-AIQCDEINILKLILDWQK 59
+G + L A IK D+ V+YLL S P++K G LH A + +++L+L
Sbjct: 8 HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ--- 64
Query: 60 CHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
HK G+ N +PL AA+ G ++IV LLL G
Sbjct: 65 -HKALVNTTGYQND-------SPLHDAAKNGHVDIVKLLLSYG 99
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 33.9 bits (76), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 71 CNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
N+ND TPL LAA +G LEIV +LL+ G
Sbjct: 106 VNANDH-NGFTPLHLAANIGHLEIVEVLLKHG 136
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 75 DFPKCITPLMLAAQLGRLEIVALLLERG 102
D +TPL LAA G LE+V +LL+ G
Sbjct: 76 DDSLGVTPLHLAADRGHLEVVEVLLKNG 103
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA G LEIV +LL+ G
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNG 70
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 14/64 (21%)
Query: 39 ALHAIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALL 98
A A Q DE+ IL + N+ND+ TPL LAA LG LEIV +L
Sbjct: 21 AARAGQDDEVRIL-------------TANGADVNANDYWGH-TPLHLAAMLGHLEIVEVL 66
Query: 99 LERG 102
L+ G
Sbjct: 67 LKNG 70
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 79 CITPLMLAAQLGRLEIVALLLERG 102
+TPL LAAQLG LEIV +LL+ G
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYG 70
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 42 AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLER 101
A Q + I++++L + E F ITPL LAA G LEIV +LL+
Sbjct: 54 AAQLGHLEIVEVLLKYGADVNAEDNF-----------GITPLHLAAIRGHLEIVEVLLKH 102
Query: 102 G 102
G
Sbjct: 103 G 103
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 71 CNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
N++D ITPL LAA G LEIV +LL+ G
Sbjct: 73 VNASDLT-GITPLHLAAATGHLEIVEVLLKHG 103
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA+ G LEIV +LL+ G
Sbjct: 115 TPLHLAAKYGHLEIVEVLLKHG 136
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 81 TPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNTDNL 125
TPL LAA G LEIV +LL+ G + L + + T +L
Sbjct: 49 TPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHL 93
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 71 CNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
N+ND + TPL LAA G LEIV +LL+ G
Sbjct: 106 VNANDM-EGHTPLHLAAMFGHLEIVEVLLKNG 136
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 79 CITPLMLAAQLGRLEIVALLLERG 102
+TPL LAA G LEIV +LL+ G
Sbjct: 80 GMTPLRLAALFGHLEIVEVLLKNG 103
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA+ G LE+V LLLE G
Sbjct: 41 TPLHLAARNGHLEVVKLLLEAG 62
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 71 CNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
N+ DF TPL LAA G LEIV +LL+ G
Sbjct: 40 VNARDFTGW-TPLHLAAHFGHLEIVEVLLKNG 70
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 79 CITPLMLAAQLGRLEIVALLLERG 102
+TPL LAA+ G LEIV +LL+ G
Sbjct: 80 GVTPLHLAARRGHLEIVEVLLKNG 103
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA+ G LEIV +LL+ G
Sbjct: 115 TPLHLAAKRGHLEIVEVLLKNG 136
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 91 RLEIVALLLERGHCIPYPHLPTCQCVQVCQNTDNLNSKPQPPSSIINIYRSKRFFSVRW- 149
RLE +LL G +PH+P ++ C +++ P+PP ++ + F SV +
Sbjct: 150 RLETENILLASGS---WPHMPNIPGIEHCISSNEAFYLPEPPRRVLTV--GGGFISVEFA 204
Query: 150 NIYEVFK 156
I+ +K
Sbjct: 205 GIFNAYK 211
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 91 RLEIVALLLERGHCIPYPHLPTCQCVQVCQNTDNLNSKPQPPSSIINIYRSKRFFSVRW- 149
RLE +LL G +PH+P ++ C +++ P+PP ++ + F SV +
Sbjct: 151 RLETEHILLASGS---WPHMPNIPGIEHCISSNEAFYLPEPPRRVLTV--GGGFISVEFA 205
Query: 150 NIYEVFK 156
I+ +K
Sbjct: 206 GIFNAYK 212
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 91 RLEIVALLLERGHCIPYPHLPTCQCVQVCQNTDNLNSKPQPPSSIINIYRSKRFFSVRW- 149
RLE +LL G +PH+P ++ C +++ P+PP ++ + F SV +
Sbjct: 150 RLETEHILLASGS---WPHMPNIPGIEHCISSNEAFYLPEPPRRVLTV--GGGFISVEFA 204
Query: 150 NIYEVFK 156
I+ +K
Sbjct: 205 GIFNAYK 211
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 91 RLEIVALLLERGHCIPYPHLPTCQCVQVCQNTDNLNSKPQPPSSIINIYRSKRFFSVRW- 149
RLE +LL G +PH+P ++ C +++ P+PP ++ + F SV +
Sbjct: 149 RLETEHILLASGS---WPHMPNIPGIEHCISSNEAFYLPEPPRRVLTV--GGGFISVEFA 203
Query: 150 NIYEVFK 156
I+ +K
Sbjct: 204 GIFNAYK 210
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA+ G LE+V LLLE G
Sbjct: 59 TPLHLAARNGHLEVVKLLLEAG 80
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 79 CITPLMLAAQLGRLEIVALLLERG 102
+TPL LAA+ G LEIV +LL+ G
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHG 70
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA +G LEIV +LLE G
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYG 103
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSLPS---IKVRDGA--LH-AIQCDEINILKLILDWQKC 60
G + L A + +VK LL + K ++G LH A + + ++KL+L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL----- 55
Query: 61 HKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
E N+ D TPL LAA+ G LE+V LLLE G
Sbjct: 56 -----EAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAG 91
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 79 CITPLMLAAQLGRLEIVALLLERG 102
+TPL LAA+ G LEIV +LL+ G
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHG 70
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA +G LEIV +LLE G
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYG 103
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA+ G LE+V LLLE G
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAG 25
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA+ G LE+V LLLE G
Sbjct: 37 TPLHLAARNGHLEVVKLLLEAG 58
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA+ G LE+V LLLE G
Sbjct: 70 TPLHLAARNGHLEVVKLLLEAG 91
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA+ G LE+V LLLE G
Sbjct: 103 TPLHLAARNGHLEVVKLLLEAG 124
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA++G LEIV +LL+ G
Sbjct: 49 TPLHLAARVGHLEIVEVLLKNG 70
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 71 CNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
N+ DF TPL LAA+ G LEIV +LL+ G
Sbjct: 73 VNALDFSGS-TPLHLAAKRGHLEIVEVLLKYG 103
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 66 EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
++ N++D TPL LAA G LEIV +LL+ G
Sbjct: 101 KYGADVNADDTIGS-TPLHLAADTGHLEIVEVLLKYG 136
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 79 CITPLMLAAQLGRLEIVALLLERG 102
+TPL LAA+ G LEIV +LL+ G
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHG 70
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA +G LEIV +LLE G
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYG 103
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA LG LEIV +LL+ G
Sbjct: 70 TPLHLAASLGHLEIVEVLLKYG 91
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 66 EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
++ N+ D ITPL LAA G LEIV +LL+ G
Sbjct: 89 KYGADVNAKD-ATGITPLYLAAYWGHLEIVEVLLKHG 124
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL +AA +G LEIV +LL G
Sbjct: 37 TPLHMAAAVGHLEIVEVLLRNG 58
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 71 CNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
N+ D ITPL LAA G LEIV +LL+ G
Sbjct: 106 VNAKD-DNGITPLHLAANRGHLEIVEVLLKYG 136
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA G LEIV +LL+ G
Sbjct: 82 TPLHLAAHFGHLEIVEVLLKNG 103
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA G LEIV +LL+ G
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNG 70
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA+ G EIV LLL +G
Sbjct: 44 TPLHLAAKNGHAEIVKLLLAKG 65
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 79 CITPLMLAAQLGRLEIVALLLERG 102
+TPL LAA G LEIV +LL+ G
Sbjct: 113 GLTPLHLAADRGHLEIVEVLLKHG 136
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA G LEIV +LL+ G
Sbjct: 82 TPLHLAADNGHLEIVEVLLKYG 103
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 71 CNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
N+ND K TPL LAA LEIV +LL+ G
Sbjct: 40 VNAND-RKGNTPLHLAADYDHLEIVEVLLKHG 70
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 42 AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLER 101
A D + I++++L K ++ H N TPL LAA G LEIV +LL+
Sbjct: 54 AADYDHLEIVEVLL------KHGADVNAHDND-----GSTPLHLAALFGHLEIVEVLLKH 102
Query: 102 G 102
G
Sbjct: 103 G 103
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 71 CNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
N+ D +TPL LAA G LEIV +LL+ G
Sbjct: 40 VNATD-ASGLTPLHLAATYGHLEIVEVLLKHG 70
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA +G LEIV +LL+ G
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHG 103
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA +G LEIV +LL+ G
Sbjct: 115 TPLHLAAIMGHLEIVEVLLKHG 136
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 71 CNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
N+ D +TPL LAA G LEIV +LL+ G
Sbjct: 40 VNATD-ASGLTPLHLAATYGHLEIVEVLLKHG 70
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA +G LEIV +LL+ G
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHG 103
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA +G LEIV +LL+ G
Sbjct: 115 TPLHLAAIMGHLEIVEVLLKHG 136
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 66 EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
++ N+ D+ + TPL LAA+ G LEIV +LL+ G
Sbjct: 101 KYGADVNAMDY-QGYTPLHLAAEDGHLEIVEVLLKYG 136
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA G LEIV +LL+ G
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYG 103
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 71 CNSNDFP-KCITPLMLAAQLGRLEIVALLLERGHCIPYPHL 110
N ND + TPL++A++ GR EIV LLE G I L
Sbjct: 125 ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL 165
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 71 CNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
N+ D +TPL LAA G+LEIV +LL+ G
Sbjct: 32 VNATD-DNGLTPLHLAAANGQLEIVEVLLKNG 62
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 71 CNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
N++D ITPL LAA G LEIV +LL+ G
Sbjct: 65 VNASD-SAGITPLHLAAYDGHLEIVEVLLKHG 95
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA G+LEIV +LL+ G
Sbjct: 107 TPLHLAALSGQLEIVEVLLKHG 128
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA+ G LEIV +LL+ G
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYG 70
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA G LEIV +LL+ G
Sbjct: 82 TPLHLAADNGHLEIVEVLLKHG 103
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 71 CNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
N+ D+ + TPL LAA G LEIV +LL+ G
Sbjct: 106 VNAKDY-EGFTPLHLAAYDGHLEIVEVLLKYG 136
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 71 CNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
C+++D K TPL LAA R+ IV LLL+ G
Sbjct: 51 CHASDGRKS-TPLHLAAGYNRVRIVQLLLQHG 81
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 17/102 (16%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSL---PSIKVRDGA--LH-AIQCDEINILKLILDWQKC 60
G + L A +VK LLS P+ K DG LH A + ++KL+L +
Sbjct: 36 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLL--SQG 93
Query: 61 HKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
P N+ D TPL LAA+ G E+V LLL +G
Sbjct: 94 ADP--------NAKDS-DGKTPLHLAAENGHKEVVKLLLSQG 126
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 79 CITPLMLAAQLGRLEIVALLLERG 102
+TPL LAA+ G LEIV +LL+ G
Sbjct: 113 GMTPLHLAAKWGYLEIVEVLLKHG 136
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 79 CITPLMLAAQLGRLEIVALLLERG 102
TPL LAA G LEIV +LL+ G
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHG 70
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA G LEIV +LL+ G
Sbjct: 82 TPLHLAAYWGHLEIVEVLLKNG 103
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA+ G LEIV +LL+ G
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAG 58
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA+ G LEIV +LL+ G
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAG 58
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA+ G LEIV +LL+ G
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAG 91
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA+ G LEIV +LL+ G
Sbjct: 103 TPLHLAAREGHLEIVEVLLKAG 124
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA+ G LEIV +LL+ G
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAG 70
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA+ G LEIV +LL+ G
Sbjct: 82 TPLHLAAREGHLEIVEVLLKAG 103
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA+ G LEIV +LL+ G
Sbjct: 115 TPLHLAAREGHLEIVEVLLKAG 136
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA+ G LEIV +LL+ G
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAG 58
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA+ G LEIV +LL+ G
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAG 91
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA+ G LEIV +LL+ G
Sbjct: 103 TPLHLAAREGHLEIVEVLLKAG 124
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA G LEIV +LL+ G
Sbjct: 115 TPLHLAADAGHLEIVEVLLKYG 136
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA G LEIV +LL+ G
Sbjct: 82 TPLHLAALYGHLEIVEVLLKNG 103
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA G LEIV +LL+ G
Sbjct: 49 TPLHLAAIKGHLEIVEVLLKHG 70
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 80 ITPLMLAAQLGRLEIVALLLERGHCIPY 107
+TPL LAA+ G++EI +L+R PY
Sbjct: 235 LTPLKLAAKEGKIEIFRHILQREFSGPY 262
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 80 ITPLMLAAQLGRLEIVALLLERG 102
+TPL LAA G LEIV +LL+ G
Sbjct: 48 LTPLHLAAVSGHLEIVEVLLKHG 70
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA G LEIV +LL+ G
Sbjct: 115 TPLHLAADEGHLEIVEVLLKYG 136
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA G LEIV +LL+ G
Sbjct: 82 TPLHLAAMTGHLEIVEVLLKYG 103
>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 291
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 70 HCNSNDFPKCITPLMLAAQLGRLEIVAL--LLERGHCIPYPHLPTCQCVQVCQN 121
+C+SN P ++ G++ ++ L LLERG +P P C+ + +N
Sbjct: 211 YCDSNQSPHTKFTELIGHTQGQMTVLRLTELLERGERLPRPDRCPCEIYHLMKN 264
>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 290
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 70 HCNSNDFPKCITPLMLAAQLGRLEIVAL--LLERGHCIPYPHLPTCQCVQVCQN 121
+C+SN P ++ G++ ++ L LLERG +P P C+ + +N
Sbjct: 210 YCDSNQSPHTKFTELIGHTQGQMTVLRLTELLERGERLPRPDRCPCEIYHLMKN 263
>pdb|2DQ0|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii Complexed With A Seryl-Adenylate Analog
pdb|2DQ0|B Chain B, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii Complexed With A Seryl-Adenylate Analog
pdb|2ZR2|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii Complexed With Atp
pdb|2ZR2|B Chain B, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii Complexed With Atp
pdb|2ZR3|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii
pdb|2ZR3|B Chain B, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii
Length = 455
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 167 WVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVA 203
W A +++R D+ D + +Y H L+ T +A S VA
Sbjct: 380 WQARRLNIRFRDRTDEKPRYVHTLNSTAIATSRAIVA 416
>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With
Quinoline-Thiadiazole- Thiophene Inhibitor
Length = 302
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 70 HCNSNDFPKCITPLMLAAQLGRLEIVAL--LLERGHCIPYPHLPTCQCVQVCQN 121
HC+S+ P ++ G++ ++ L LLERG +P P C+ + +N
Sbjct: 216 HCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPCEVYHLMKN 269
>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6
Length = 302
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 70 HCNSNDFPKCITPLMLAAQLGRLEIVAL--LLERGHCIPYPHLPTCQCVQVCQN 121
HC+S+ P ++ G++ ++ L LLERG +P P C+ + +N
Sbjct: 216 HCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPCEVYHLMKN 269
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 79 CITPLMLAAQLGRLEIVALLLERG 102
+TPL LA G LEIV +LL+ G
Sbjct: 47 GLTPLYLATAHGHLEIVEVLLKNG 70
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 22/107 (20%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKV-------RDGALHAI----QCDEINILKLILD 56
G +AL A K V ++K LL V R+ +HA+ D I L+LD
Sbjct: 168 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 227
Query: 57 WQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGH 103
H + +G + TPL+LA + L +V LLE+ H
Sbjct: 228 ----HGADVNVRG-------ERGKTPLILAVEKKHLGLVQRLLEQEH 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.141 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,137,916
Number of Sequences: 62578
Number of extensions: 267932
Number of successful extensions: 645
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 537
Number of HSP's gapped (non-prelim): 121
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)