RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4451
(256 letters)
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 73.2 bits (180), Expect = 9e-15
Identities = 36/107 (33%), Positives = 62/107 (57%), Gaps = 7/107 (6%)
Query: 149 WNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDL--ERKYWHFLDPTLVAESLFAVATVM 206
WNI + S ++ TF+ A + V Q R++W DPTL+ E+LFA A V+
Sbjct: 423 WNILDFGMNSFYLATFLDRPFAILFVT----QAFLVLREHWLRFDPTLIEEALFAFALVL 478
Query: 207 SFCNLLFLCQLSYDLGPMQVSVGKMT-EDIMKFSVLFGIIMLAFTVG 252
S+ NLL++ + + LGP+Q+ +G+M DI++F ++ +++ F G
Sbjct: 479 SWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACG 525
Score = 55.1 bits (133), Expect = 1e-08
Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKVRDG--ALHAIQCDEINILKLILDWQKCHKPES 65
G SAL A I+N+ + + LL S + G LHAI + ++ ++ IL +S
Sbjct: 52 GRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKS 111
Query: 66 EFKGHCN---SNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNT 122
N +++F IT L LAA EIV LLLERG +P +
Sbjct: 112 GPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPA----RACGD-FFVKS 166
Query: 123 DNLNS 127
++S
Sbjct: 167 QGVDS 171
Score = 30.8 bits (70), Expect = 0.80
Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 26/82 (31%)
Query: 39 ALH-AIQCDEINILKLILDWQKCHKPESEFKG-----HCNSNDFPK-----CI----TPL 83
ALH A I+KL+L+ +G + F K +PL
Sbjct: 131 ALHLAAHRQNYEIVKLLLE-----------RGASVPARACGDFFVKSQGVDSFYHGESPL 179
Query: 84 MLAAQLGRLEIVALLLERGHCI 105
AA LG IVALL E I
Sbjct: 180 NAAACLGSPSIVALLSEDPADI 201
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 54.2 bits (131), Expect = 7e-10
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 12 LQTAIIKNDVMMVKYLLSL---PSIKVRDGALH-AIQCDEINILKLILDWQKCHKPESEF 67
L A ++ +VK LL ++ D ALH A + + I+KL+L E
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLL----------EH 50
Query: 68 KGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
N+ D T L LAA+ G LEIV LLLE G
Sbjct: 51 GADVNAKDKDGN-TALHLAARNGNLEIVKLLLEHG 84
Score = 35.7 bits (83), Expect = 0.003
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 14/67 (20%)
Query: 40 LH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALL 98
LH A + + ++KL+L+ + T L LAA+ G LEIV LL
Sbjct: 1 LHLAAKNGNLELVKLLLE-------------KGADVNLGDTDTALHLAARNGNLEIVKLL 47
Query: 99 LERGHCI 105
LE G +
Sbjct: 48 LEHGADV 54
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 54.3 bits (131), Expect = 2e-09
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G + L A + +VK LL + K DG LH A + + I+KL+L
Sbjct: 7 GRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL------ 60
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
E N+ D TPL LAA+ G L++V LLL+ G
Sbjct: 61 ----EKGADVNARDK-DGNTPLHLAARNGNLDVVKLLLKHG 96
Score = 48.1 bits (115), Expect = 2e-07
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Query: 8 GVSALQTAIIKNDVMMVKYLLS---LPSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G + L A + +VK LL + + +DG LH A + ++++KL+L
Sbjct: 40 GRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKH---- 95
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLL 99
N+ D TPL LAA+ G LE+V LLL
Sbjct: 96 ------GADVNARDKDGR-TPLHLAAKNGHLEVVKLLL 126
Score = 38.9 bits (91), Expect = 4e-04
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Query: 39 ALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVAL 97
LH A + ++KL+L E N+ D TPL LAA+ G LEIV L
Sbjct: 10 PLHLAASNGHLEVVKLLL----------ENGADVNAKDNDGR-TPLHLAAKNGHLEIVKL 58
Query: 98 LLERGHCI 105
LLE+G +
Sbjct: 59 LLEKGADV 66
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 39.1 bits (92), Expect = 5e-05
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 81 TPLMLAAQLGRLEIVALLLERGHCI 105
TPL LAA+ G LE+V LLLE G +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV 28
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 36.7 bits (84), Expect = 0.007
Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 19/107 (17%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALHAI------QCDEINILKLIL 55
G L +A K D +VK LL+ + K DG LH I + KL+L
Sbjct: 72 DGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLL 131
Query: 56 DWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ + + + + TPL AA G +IV LLLE G
Sbjct: 132 E----AGADLDVNNLRDED----GNTPLHWAALNGDADIVELLLEAG 170
Score = 27.9 bits (61), Expect = 5.4
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLS-LPSIKVRDGALH 41
G + L A + D +V+ LL R+
Sbjct: 146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGV 181
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 31.1 bits (71), Expect = 0.033
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA+ G LE+V LLLE G
Sbjct: 4 TPLHLAARNGNLELVKLLLEHG 25
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 35.0 bits (80), Expect = 0.033
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 16/106 (15%)
Query: 3 YLLFQGVSALQTAIIKNDVMMVKYLLS---LPSIKVRD--GALH-AIQCDEINILKLILD 56
+ ++ G+S ++ A+ D +K L+ +P +K D LH A++ ++ ++ +LD
Sbjct: 30 FEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89
Query: 57 WQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
K + + +TPL LA L +L+I+ LL+ RG
Sbjct: 90 LGK----------FADDVFYKDGMTPLHLATILKKLDIMKLLIARG 125
Score = 31.9 bits (72), Expect = 0.34
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 10 SALQTAIIKNDVMMVKYLLS-LPSIKVRDGA-----LHAIQCDEINILKLILDWQKCHKP 63
S L A++ D+ ++ L+ + + D + A+ +I I K++LD
Sbjct: 137 SPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLD------- 189
Query: 64 ESEFKGHCNSNDFPK--CITPLMLAAQLGRLEIVALLLERG 102
N + F K C+ L A + +++IV L ++RG
Sbjct: 190 -----SGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRG 225
Score = 31.5 bits (71), Expect = 0.36
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 17/107 (15%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSL---PSIKVRD--GALH-AIQCDEINILKLILDWQKC 60
G++ L A I + ++K L++ P I D LH A+ +I ++L++D
Sbjct: 101 DGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID---- 156
Query: 61 HKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPY 107
HK + + C TPL++A G + I +LL+ G I Y
Sbjct: 157 HKACLDIEDCCGC-------TPLIIAMAKGDIAICKMLLDSGANIDY 196
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 29.9 bits (68), Expect = 0.11
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA+ G LE+V LLL++G
Sbjct: 4 TPLHLAAENGNLEVVKLLLDKG 25
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein. This family contains
Sodium, Potassium, Calcium ion channels. This family is
6 transmembrane helices in which the last two helices
flank a loop which determines ion selectivity. In some
sub-families (e.g. Na channels) the domain is repeated
four times, whereas in others (e.g. K channels) the
protein forms as a tetramer in the membrane. A bacterial
structure of the protein is known for the last two
helices but is not the Pfam family due to it lacking the
first four helices.
Length = 194
Score = 31.9 bits (73), Expect = 0.23
Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 24/118 (20%)
Query: 135 IINIYRSKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTL 194
I + +++F WNI + +++ L
Sbjct: 18 FIALGFKRKYFRSPWNILDFLVVLPSLVSL------------------------ILFLLG 53
Query: 195 VAESLFAVATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
L V ++ LL L + L + S+G+ + ++ +L +++ F +
Sbjct: 54 EDSGLLRVLRLLRLLRLLRLLRRFPGLRTLLQSLGRSLKSLLNLLLLLLLLLFIFAII 111
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 29.2 bits (66), Expect = 0.25
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 81 TPLMLAAQLGRLEIVALLLERGHCI 105
TPL LAA+ G LE+V LL+ G +
Sbjct: 18 TPLHLAAKYGALELVQWLLKPGVDL 42
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 29.1 bits (66), Expect = 0.28
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 81 TPLMLAAQLGRLEIVALLLERGHCI 105
T L AA GRLE+V LLE+G I
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDI 27
Score = 26.8 bits (60), Expect = 2.2
Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 38/92 (41%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEF 67
G +AL A I + +VKYLL + + +
Sbjct: 1 GRTALHKAAISGRLELVKYLLE-----------KGVDINRTDE----------------- 32
Query: 68 KGHCNSNDFPKCITPLMLAAQLGRLEIVALLL 99
T L +AA+ G LE++ LLL
Sbjct: 33 ----------DGNTALHIAAENGNLEVLKLLL 54
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 30.6 bits (69), Expect = 0.80
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 71 CNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
N D+ TPL +A G +++V +LLE G
Sbjct: 108 PNCRDYDGR-TPLHIACANGHVQVVRVLLEFG 138
>gnl|CDD|217309 pfam02990, EMP70, Endomembrane protein 70.
Length = 518
Score = 29.6 bits (67), Expect = 1.7
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 154 VFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWH---FLDPTLVAESLFAVATVMSF 208
+ ++ + +VA YVS RLY + K W L L +F + V++F
Sbjct: 295 LLTAAIVLYALTGFVAGYVSARLYKT--FKGKKWKRNLILTAFLFPGIVFVIFFVLNF 350
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 29.3 bits (65), Expect = 2.5
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 23/125 (18%)
Query: 9 VSALQTAIIKNDVMMVKYLLS---LPSIKVRDGALHAIQCDEINILKLILDWQKCHKPES 65
+ L+ AI ND+ K S + IK R IQ DE+ I +++L
Sbjct: 122 IHILKEAISGNDIHYDKINESIEYMKLIKER------IQQDELLIAEMLL---------- 165
Query: 66 EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG---HCIPYPHLPTCQCVQVCQNT 122
E N+ D CITP+ AA+ G ++V LLL G + I L +C +N
Sbjct: 166 EGGADVNAKDI-YCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNI 224
Query: 123 DNLNS 127
D + +
Sbjct: 225 DTIKA 229
>gnl|CDD|145187 pfam01886, DUF61, Protein of unknown function DUF61. Protein
found in Archaebacteria. These proteins have no known
function.
Length = 132
Score = 27.3 bits (61), Expect = 5.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 31 PSIKVRDGALHAIQCDEINILKLILD 56
P I +RDG+ H DE+ L +L
Sbjct: 32 PYIILRDGSRHYFDRDELEFLSNLLP 57
>gnl|CDD|181053 PRK07590, PRK07590, L,L-diaminopimelate aminotransferase;
Validated.
Length = 409
Score = 27.1 bits (61), Expect = 8.8
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKL 53
QG L+ I +ND +S I + DGA +CD NIL +
Sbjct: 76 QGYDFLREKIAENDYQARGCDISADEIFISDGA----KCDTGNILDI 118
>gnl|CDD|146683 pfam04172, LrgB, LrgB-like family. The two products of the lrgAB
operon are potential membrane proteins, and LrgA and
LrgB are both thought to control of murein hydrolase
activity and penicillin tolerance.
Length = 215
Score = 26.7 bits (60), Expect = 9.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 174 VRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLL 212
V LY Q+ L +++W + +VA S+ A+ + + LL
Sbjct: 64 VPLYKQRALLKRHWLPILVGIVAGSVVAIVSGVLLAKLL 102
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.141 0.446
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,807,315
Number of extensions: 1172562
Number of successful extensions: 1308
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1294
Number of HSP's successfully gapped: 43
Length of query: 256
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 161
Effective length of database: 6,723,972
Effective search space: 1082559492
Effective search space used: 1082559492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.0 bits)