RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4451
(256 letters)
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 54.1 bits (131), Expect = 6e-09
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 11/102 (10%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKC 60
+ L A+I N + + LL P ++ G LH A + + + ++
Sbjct: 44 LQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ---- 99
Query: 61 HKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ ++ T L LA+ G L IV LL+ G
Sbjct: 100 SCTTPHLHSILKATNY-NGHTCLHLASIHGYLGIVELLVSLG 140
Score = 47.5 bits (114), Expect = 8e-07
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 22/107 (20%)
Query: 8 GVSALQTAIIKNDVMMVKYLLS-------LPSIKVRDG----ALH-AIQCDEINILKLIL 55
G + L A + + V L +K + LH A + I++L++
Sbjct: 78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 137
Query: 56 DWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ + CN T L LA L ++V+LLL+ G
Sbjct: 138 S----LGADVNAQEPCNGR------TALHLAVDLQNPDLVSLLLKCG 174
Score = 47.2 bits (113), Expect = 1e-06
Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 18/103 (17%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSL-PSIKVRDG-----ALH-AIQCDEINILKLILDWQK 59
G + L A I + +V+ L+SL + ++ ALH A+ +++ L+L
Sbjct: 116 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK-CG 174
Query: 60 CHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
++G+ +P L I L +
Sbjct: 175 ADVNRVTYQGY----------SPYQLTWGRPSTRIQQQLGQLT 207
Score = 27.1 bits (61), Expect = 5.0
Identities = 4/26 (15%), Positives = 9/26 (34%), Gaps = 4/26 (15%)
Query: 81 TPLMLAAQLGR----LEIVALLLERG 102
+ L LA +E++ +
Sbjct: 10 SFLHLAIIHEEKALTMEVIRQVKGDL 35
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 54.0 bits (131), Expect = 1e-08
Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 25/105 (23%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
+ L A MVK LL P++ G LH A + + + +L+
Sbjct: 80 DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE----- 134
Query: 62 KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
K F TPL +AA+ G++ + LLLER
Sbjct: 135 ------KEASQACMTKKGF----TPLHVAAKYGKVRVAELLLERD 169
Score = 52.1 bits (126), Expect = 5e-08
Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 25/106 (23%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKC 60
QGV+ L A + MV LLS ++ + G LH Q + + +++
Sbjct: 244 QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK---- 299
Query: 61 HKPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
G + TPL +A+ G +++V LL+
Sbjct: 300 -------HGVMVDATTRMGY----TPLHVASHYGNIKLVKFLLQHQ 334
Score = 48.6 bits (117), Expect = 6e-07
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G++ L A+ N++ +VK LL P +G LH A + +++ + + +L +
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ----Y 234
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ + + TPL LAAQ G E+VALLL +
Sbjct: 235 GGSANAE---SVQGV----TPLHLAAQEGHAEMVALLLSKQ 268
Score = 48.6 bits (117), Expect = 7e-07
Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 25/105 (23%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G++ L + V + L+ R G LH A I ++K +L
Sbjct: 278 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ----- 332
Query: 62 KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ +PL AAQ G +IV LLL+ G
Sbjct: 333 ------HQADVNAKTKLGY----SPLHQAAQQGHTDIVTLLLKNG 367
Score = 45.6 bits (109), Expect = 6e-06
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G + L A ++ +VK+LL + K + G LH A Q +I+ L+L +
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK----N 366
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ TPL +A +LG + + +L
Sbjct: 367 GASPNEVSSDGT-------TPLAIAKRLGYISVTDVLKVVT 400
Score = 42.5 bits (101), Expect = 7e-05
Identities = 20/95 (21%), Positives = 29/95 (30%), Gaps = 38/95 (40%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEF 67
G++ L A + +VK LL GA N+
Sbjct: 14 GLTPLHVASFMGHLPIVKNLLQR-------GA-------SPNV----------------- 42
Query: 68 KGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
N TPL +AA+ G E+ LL+
Sbjct: 43 ---SNVKVE----TPLHMAARAGHTEVAKYLLQNK 70
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 50.2 bits (121), Expect = 6e-08
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 15/100 (15%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKVRDG----ALH-AIQCDEINILKLILDWQKCHK 62
+ TA K D + LL + D AL ++L+ +
Sbjct: 44 YETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE----AG 99
Query: 63 PESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ + + + +T L +AA R E+V L+E G
Sbjct: 100 ADLDHR---DMRG---GLTALHMAAGYVRPEVVEALVELG 133
Score = 39.0 bits (92), Expect = 5e-04
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
T L LA ++ + ++ G
Sbjct: 145 TALELAREILKTTPKGNPMQFG 166
Score = 32.1 bits (74), Expect = 0.10
Identities = 1/22 (4%), Positives = 4/22 (18%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
++ + G
Sbjct: 16 MEYLIEWKDGHSPSWVPSSYIA 37
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 51.1 bits (123), Expect = 6e-08
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 21/112 (18%)
Query: 8 GVSALQTAIIKNDVMMVKYLLS--------LPSIKVRDG--ALH-AIQCDEINILKLILD 56
G +AL A + +++ L+ + ++ +G ALH A+ +N+++ +L
Sbjct: 37 GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
Query: 57 WQKCH------KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ + N PL AA +G EIV LL+E G
Sbjct: 97 ----RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG 144
Score = 43.7 bits (104), Expect = 2e-05
Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 15/106 (14%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINI----LKLILD 56
G L A +V+ L+ + G LH I L+L
Sbjct: 120 YGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLS 179
Query: 57 WQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ K + TP LA G + + L+++
Sbjct: 180 ----YDGGDHLKSLELVPNNQGL-TPFKLAGVEGNIVMFQHLMQKR 220
Score = 30.7 bits (70), Expect = 0.38
Identities = 8/23 (34%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 81 TPLMLAAQLGRLEIVA-LLLERG 102
+PL+LAA+ ++ ++ LL G
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEG 27
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 50.9 bits (122), Expect = 8e-08
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 22/117 (18%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKV------RDG--ALHA----------IQCDEIN 49
G L A N +V YL + G LHA
Sbjct: 140 GELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTK 199
Query: 50 ILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIP 106
+ L+L P++ + N++ +PLM+AA+ G++ I ++ R
Sbjct: 200 MYDLLLIKCAKLFPDTNLEALLNNDGL----SPLMMAAKTGKIGIFQHIIRREIADA 252
Score = 48.6 bits (116), Expect = 5e-07
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 24/98 (24%)
Query: 6 FQGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPES 65
++G +AL AI + V+ L+ GA +++ +
Sbjct: 91 YRGQTALHIAIERRCKHYVELLVEK-------GA-------DVH--------AQARGRFF 128
Query: 66 EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGH 103
+ K F + PL LAA + IV L E GH
Sbjct: 129 QPKDEGGYFYFGE--LPLSLAACTNQPHIVHYLTENGH 164
Score = 40.1 bits (94), Expect = 3e-04
Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 19/110 (17%)
Query: 11 ALQTAIIKNDVM----MVKYLLSL-------PSIKVRDG--ALH-AIQCDEIN---ILKL 53
L + + ++ +LL+ + G L A+ + +
Sbjct: 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67
Query: 54 ILDWQKCHKPESEFKG-HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+LD + EF + T L +A + V LL+E+G
Sbjct: 68 LLDIAEKTGNMREFINSPFRDVYYRGQ-TALHIAIERRCKHYVELLVEKG 116
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 50.7 bits (122), Expect = 8e-08
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 15/101 (14%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSLPSIKVRDG----ALH-AIQCDEINILKLILDWQKCH 61
+ + TA K D + LL + D AL ++L+ +
Sbjct: 44 EYETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE----A 99
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ + + + +T L +AA R E+V L+E G
Sbjct: 100 GADLDHR---DMRG---GLTALHMAAGYVRPEVVEALVELG 134
Score = 41.0 bits (97), Expect = 1e-04
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 18/103 (17%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSL-PSIKVRDG-----ALH-AIQCDEINILKLILDWQK 59
G +AL V+ L + RD ALH A +++ +++
Sbjct: 76 NGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE--- 132
Query: 60 CHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ E + + T L LA ++ + ++ G
Sbjct: 133 -LGADIEVE---DERGL----TALELAREILKTTPKGNPMQFG 167
Score = 35.7 bits (83), Expect = 0.009
Identities = 6/96 (6%), Positives = 18/96 (18%), Gaps = 16/96 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEF 67
G++AL+ A + + ++ ++ + E
Sbjct: 144 GLTALELAREILKTTPKGNPMQ-----------FGRRIGLEKVINVLEGQVFEYAEVDEI 192
Query: 68 KGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGH 103
L + +
Sbjct: 193 VEKRGKGK-----DVEYLVRWKDGGDCEWVKGVHVA 223
Score = 30.6 bits (70), Expect = 0.42
Identities = 1/22 (4%), Positives = 4/22 (18%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
++ + G
Sbjct: 17 MEYLIEWKDGHSPSWVPSSYIA 38
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 50.6 bits (121), Expect = 1e-07
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 24/98 (24%)
Query: 6 FQGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPES 65
++G +AL AI + ++ +V L+ +GA ++ +
Sbjct: 99 YKGQTALHIAIERRNMTLVTLLVE-------NGA-------DVQ--------AAAN--GD 134
Query: 66 EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGH 103
FK F PL LAA +L IV LL+
Sbjct: 135 FFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW 172
Score = 47.1 bits (112), Expect = 2e-06
Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 20/112 (17%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKV------RDG--ALHA---IQCDEINILKLILD 56
G L A N + +VK+LL G LHA + + ++ K +
Sbjct: 148 GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS 207
Query: 57 WQKCHKPESEFKGHCNSNDFPKCI------TPLMLAAQLGRLEIVALLLERG 102
+ + I TPL LAA G++ ++A +L+R
Sbjct: 208 MYNEIL---ILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE 256
Score = 32.1 bits (73), Expect = 0.16
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 8/74 (10%)
Query: 36 RDGALHAIQCDEINILKLILDWQKCHKPESEFKGHC-NSNDFPKCITPLMLA---AQLGR 91
R A+ L+ +L + + K + D T L+ A G+
Sbjct: 14 RRSIFDAVAQSNCQELESLLPFLQRSKK----RLTDSEFKDPETGKTCLLKAMLNLHNGQ 69
Query: 92 LEIVALLLERGHCI 105
+ +ALLL+
Sbjct: 70 NDTIALLLDVARKT 83
Score = 27.1 bits (60), Expect = 6.3
Identities = 3/29 (10%), Positives = 8/29 (27%), Gaps = 2/29 (6%)
Query: 72 NSNDFPKCITPLMLAAQLGRLEIVALLLE 100
+ + + A + + LL
Sbjct: 8 PPRLYDR--RSIFDAVAQSNCQELESLLP 34
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 50.6 bits (122), Expect = 2e-07
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 21/102 (20%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
+ + A K V+ L+ P+I+ R G ALH A + ++ K +
Sbjct: 20 NMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS----- 74
Query: 62 KPESEFKG-HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
G + P+ LA + ++V L+E
Sbjct: 75 ------VGEVHSLWH---GQKPIHLAVMANKTDLVVALVEGA 107
Score = 47.9 bits (115), Expect = 1e-06
Identities = 12/106 (11%), Positives = 34/106 (32%), Gaps = 22/106 (20%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPS--------IKVRDG--ALH-AIQCDEINILKLILD 56
+ L A+ + + ++ + G LH AI + ++ ++
Sbjct: 173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE 232
Query: 57 WQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ + ++ PL L+ + + + LL++
Sbjct: 233 ----MGIDVNME---DNEHT----VPLYLSVRAAMVLLTKELLQKT 267
Score = 46.8 bits (112), Expect = 2e-06
Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 16/107 (14%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G S L AI+ N + + + +++ + L+ +++ + + K +L
Sbjct: 211 GNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQ----K 266
Query: 62 KPESEFKGHCNSN------DFPKCITPLMLAAQLGRLEIVALLLERG 102
+ N D + + AA + E++ LL E+
Sbjct: 267 TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL 313
Score = 46.0 bits (110), Expect = 5e-06
Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 16/107 (14%)
Query: 8 GVSALQTAIIKNDVM--MVKYLLSL---PSIKVRDG--ALH-AIQCDEINILK-LILDWQ 58
G +AL + M+K L+ L P+ K + L A++ L ++
Sbjct: 138 GQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVP 197
Query: 59 KCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCI 105
++ N + L A + ++ +E G +
Sbjct: 198 SKSSLRLDYA---NKQGN----SHLHWAILINWEDVAMRFVEMGIDV 237
Score = 43.7 bits (104), Expect = 2e-05
Identities = 11/116 (9%), Positives = 30/116 (25%), Gaps = 32/116 (27%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLS------LPSIKVRDGA------------LH-AIQCDE 47
+ L ++ V++ K LL + + +G + A +
Sbjct: 243 EHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSK 302
Query: 48 INILKLILDWQKCHKPESEFKG-HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+L+L+ + K + + + + + L
Sbjct: 303 QEVLQLLQE-----------KLDEVVRSLNTGA-GGAVKRKKKAAPAVKRMKLAPS 346
Score = 41.4 bits (98), Expect = 2e-04
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 21/97 (21%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL-PSIKVRDG--ALH-AIQCDEINILKLILDWQKCHKP 63
G +AL A V KYL S+ + G +H A+ ++ +++ +++
Sbjct: 53 GCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVE------- 105
Query: 64 ESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLE 100
P L + E+ +
Sbjct: 106 ------GAKERGQ----MPESLLNECDEREVNEIGSH 132
Score = 40.2 bits (95), Expect = 4e-04
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 9/43 (20%)
Query: 69 GHCNSNDFPKC---------ITPLMLAAQLGRLEIVALLLERG 102
G + DFPK + + +AA+ G+ + V L+E G
Sbjct: 1 GPGSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETG 43
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 49.4 bits (119), Expect = 2e-07
Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 17/103 (16%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH--AIQCDEINILKLILDWQK 59
+G S + A +V YL++ + ++G L A + ++ +L+L
Sbjct: 108 EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT--- 164
Query: 60 CHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ N T L A G +++LLLE G
Sbjct: 165 -FNVSVNLGDKYHKN------TALHWAVLAGNTTVISLLLEAG 200
Score = 45.9 bits (110), Expect = 3e-06
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 18/102 (17%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL-PSIKVRDG-----ALH-AIQCDEINILKLILDWQKC 60
V+ L A I N + +VKY +S + G LH A + ++++ ++
Sbjct: 42 NVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK---- 97
Query: 61 HKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ + + + + LAAQ G IVA L+ +G
Sbjct: 98 YGADPSLI---DGEGC----SCIHLAAQFGHTSIVAYLIAKG 132
Score = 44.3 bits (106), Expect = 1e-05
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 22/104 (21%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
+ A + L+ ++ LH A + I+++K +
Sbjct: 9 STWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS----- 63
Query: 62 KPESEFKG---HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
KG D TPL A + G L +V L++ G
Sbjct: 64 ------KGAIVDQLGGDLNS--TPLHWATRQGHLSMVVQLMKYG 99
Score = 41.7 bits (99), Expect = 7e-05
Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 19/103 (18%)
Query: 8 GVSALQTAIIK-NDVMMVKYLLSL-PSIKVRDG-----ALH-AIQCDEINILKLILDWQK 59
G++ L A + + V + LL+ S+ + D ALH A+ ++ L+L+
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE--- 198
Query: 60 CHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ + N + L LA Q + ++ L E
Sbjct: 199 -AGANVDAQ---NIKGE----SALDLAKQRKNVWMINHLQEAR 233
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 47.8 bits (115), Expect = 2e-07
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G + L A IK D+ V+YLL P++K G LH A + +++L+L H
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ----H 65
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
K G+ N +PL AA+ G ++IV LLL G
Sbjct: 66 KALVNTTGYQN-------DSPLHDAAKNGHVDIVKLLLSYG 99
Score = 38.2 bits (90), Expect = 5e-04
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 81 TPLMLAAQLGRLEIVALLLERGH 103
T L +A+ G + V LL+ G
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGS 34
Score = 36.2 bits (85), Expect = 0.003
Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLS---LPSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G + L A + +V+ LL L + LH A + ++I+KL+L +
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS----Y 98
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
N P+ ++ L +
Sbjct: 99 GASRNAV---NIFGL----RPVDYTDDESMKSLLLLPEKNE 132
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 47.4 bits (114), Expect = 2e-07
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 23/104 (22%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
A+ D+ VK ++ + + G LH A C ++ IL+ +L
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL----- 61
Query: 62 KPESEFKG---HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
KG + ITPL+ A G + V LLL +G
Sbjct: 62 ------KGADINAPDKH---HITPLLSAVYEGHVSCVKLLLSKG 96
Score = 27.4 bits (62), Expect = 2.5
Identities = 13/98 (13%), Positives = 28/98 (28%), Gaps = 25/98 (25%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G L A + ++++LL + + L A+ ++ +KL+L
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLS----- 94
Query: 62 KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIV 95
KG + T ++
Sbjct: 95 ------KGADKTVKGPDGL----TAFEATDNQAIKALL 122
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 49.0 bits (118), Expect = 3e-07
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 24/107 (22%)
Query: 8 GVSALQTAIIKNDVMMVKYLLS-----LPSIKVRDG----ALH-AIQCDEINILKLILDW 57
G +A A ++ LL ++ R+ ALH A+ + ++L+L+
Sbjct: 79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE- 137
Query: 58 QKCHKPESEFKGHCNSN--DFPKCITPLMLAAQLGRLEIVALLLERG 102
+G + + D +PL+ A + L +V LLL+ G
Sbjct: 138 ----------RG-ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG 173
Score = 45.5 bits (109), Expect = 5e-06
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 20/103 (19%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL-PSIKVRDG-----ALH-AIQCDEINILKLILDWQKC 60
G++AL A+ V+ LL I D L A++ + +++++L+L
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ---- 171
Query: 61 HKPESEFKG-HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
G + N+ + + L A+ G L +V L+ G
Sbjct: 172 -------HGANVNAQMYSGS-SALHSASGRGLLPLVRTLVRSG 206
Score = 44.8 bits (107), Expect = 7e-06
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G S L A+ N + MV+ LL + ++ G ALH A + +++ ++
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR----S 205
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+S K N ++ TPLM+A ++I+ R
Sbjct: 206 GADSSLK---NCHND----TPLMVARSRRVIDILRGKATRP 239
Score = 40.9 bits (97), Expect = 1e-04
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 34/95 (35%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEF 67
G + L A+++ ++ V L++L G E++I
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQG---GR-------ELDI----------------- 41
Query: 68 KGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
N+ TPL LA +V LL+ G
Sbjct: 42 ---YNNLRQ----TPLHLAVITTLPSVVRLLVTAG 69
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 48.9 bits (118), Expect = 3e-07
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G + + A V +VK LLS +I+ + LH A ++I +++L
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA----A 166
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
K + N + +PL +AA+ R + V L L R
Sbjct: 167 KCDLHAV---NIHGD----SPLHIAARENRYDCVVLFLSRD 200
Score = 43.9 bits (105), Expect = 1e-05
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
S L A V + L+ D L A + + + +K ++
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK----A 66
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ K ++ T L LAA+ G E+V LL G
Sbjct: 67 GALVDPK---DAEGS----TCLHLAAKKGHYEVVQYLLSNG 100
Score = 41.2 bits (98), Expect = 1e-04
Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
L A V + + LL+ G LH A + + + + L L
Sbjct: 144 ENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS----R 199
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ K N TPL A+ ++ + +
Sbjct: 200 DSDVTLK---NKEGE----TPLQCASLNSQVWSALQMSKAL 233
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 49.1 bits (118), Expect = 4e-07
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 18/103 (17%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSL-PSIKVRDG-----ALH-AIQCDEINILKLILDWQK 59
G + L A+I D MV+ L + + LH A++ ++L+L+L
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AG 215
Query: 60 CHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ G TPL A + LL G
Sbjct: 216 ADPTARMYGGR----------TPLGSALLRPNPILARLLRAHG 248
Score = 46.4 bits (111), Expect = 3e-06
Identities = 21/108 (19%), Positives = 30/108 (27%), Gaps = 17/108 (15%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALHAIQCDEINILKLILDWQKCHK 62
G +AL A LL D + + +D Q +
Sbjct: 78 GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE 137
Query: 63 PESEF----KG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
E E N + TPL +A E+V LL + G
Sbjct: 138 NEEEPRDEDWRLQLEAENYDGH----TPLHVAVIHKDAEMVRLLRDAG 181
Score = 41.8 bits (99), Expect = 9e-05
Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 35/95 (36%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEF 67
G +AL A+I + +LL + + +++
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLG-----------FSAGHEYLDL----------------- 40
Query: 68 KGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
N T L LAA LG V L G
Sbjct: 41 ---QNDLGQ----TALHLAAILGEASTVEKLYAAG 68
Score = 39.5 bits (93), Expect = 5e-04
Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G + L A+ +++ LL P+ ++ G L A+ + +L+ H
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA----H 247
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ +P + + E
Sbjct: 248 GAPEPED---GGDKL----SPCSSSGSDSDSDNRDEGDEYD 281
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 49.0 bits (118), Expect = 4e-07
Identities = 27/105 (25%), Positives = 38/105 (36%), Gaps = 25/105 (23%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
+ L A N V +V+ LL K + G LH A + +L+L
Sbjct: 58 KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLK----- 112
Query: 62 KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
G + F TPL AA R+E+ +LLL G
Sbjct: 113 ------HGACVNAMDLWQF----TPLHEAASKNRVEVCSLLLSHG 147
Score = 47.5 bits (114), Expect = 1e-06
Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 31/120 (25%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQ--KCHKPES 65
G SA+ A + Y L A + ++ +K L + +P+S
Sbjct: 157 GKSAVDMAPTPELRERLTYEFK------GHSLLQAAREADLAKVKKTLALEIINFKQPQS 210
Query: 66 EF--------KGHCNSNDFPKC---------------ITPLMLAAQLGRLEIVALLLERG 102
H + +TPL +AA+ +++ +L + G
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG 270
Score = 42.5 bits (101), Expect = 7e-05
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 20/104 (19%)
Query: 8 GVSALQTAIIK---NDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQ 58
+AL A+ + + LL + K +D LH A + ++++++
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK-- 268
Query: 59 KCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
H + T L AA G L+ LLL G
Sbjct: 269 --HGAKMNALDSLGQ-------TALHRAALAGHLQTCRLLLSYG 303
Score = 34.8 bits (81), Expect = 0.020
Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 22/101 (21%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
++ L A + +++ L + G ALH A + +L+L +
Sbjct: 247 FMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLS----Y 302
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ + F T + E V +L
Sbjct: 303 GSDPSII---SLQGF----TAAQMGN-----EAVQQILSES 331
Score = 27.8 bits (63), Expect = 3.3
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 81 TPLMLAAQLG-RLEIVALLLERG 102
L+ AA+ G +++ALL
Sbjct: 26 DELLEAARSGNEEKLMALLTPLN 48
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 48.6 bits (116), Expect = 4e-07
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 25/98 (25%)
Query: 6 FQGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPES 65
+QG SAL AI K + VK L+ GA ++++ + + + H+
Sbjct: 88 YQGHSALHIAIEKRSLQCVKLLVEN-------GA-------DVHL-RACGRFFQKHQGTC 132
Query: 66 EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGH 103
+ G PL LAA + ++V LLE H
Sbjct: 133 FYFGE----------LPLSLAACTKQWDVVTYLLENPH 160
Score = 47.1 bits (112), Expect = 2e-06
Identities = 26/116 (22%), Positives = 37/116 (31%), Gaps = 14/116 (12%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPS------IKVRDG--ALHA---IQCDEINILKLILD 56
G L A +V YLL P G LHA I + L++
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 195
Query: 57 WQKCHKPESEFKGHCNSNDFPKC---ITPLMLAAQLGRLEIVALLLERGHCIPYPH 109
+ +TPL LAA+ G++EI +L+R H
Sbjct: 196 MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAH 251
Score = 40.2 bits (94), Expect = 3e-04
Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 19/110 (17%)
Query: 11 ALQTAIIKNDVMMVKYLLS---------LPSIKVRDG----ALH-AIQCDEIN---ILKL 53
L + + + + LL S L A+ + +
Sbjct: 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64
Query: 54 ILDW-QKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+L + P+ C + + + L +A + L+ V LL+E G
Sbjct: 65 LLQIDKDSGNPKPLVNAQCTDEFY-QGHSALHIAIEKRSLQCVKLLVENG 113
Score = 28.6 bits (64), Expect = 1.7
Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 3/33 (9%)
Query: 81 TPLMLAA---QLGRLEIVALLLERGHCIPYPHL 110
T LM A Q G + LL+ P
Sbjct: 45 TCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP 77
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 47.4 bits (114), Expect = 5e-07
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 24/102 (23%)
Query: 11 ALQTAIIKNDVMMVKYLLS----LPSIKVRDG--ALH-AIQCDEINILKLILDWQKCHKP 63
++ + ++ +K L L + G L A EI ++ +L+
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE------- 57
Query: 64 ESEFKG---HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
G H + + + L LA+ G +IV LLLER
Sbjct: 58 ----WGADPHILAKER---ESALSLASTGGYTDIVGLLLERD 92
Score = 43.6 bits (104), Expect = 1e-05
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 25/105 (23%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G + L A ++ V++LL P I ++ AL A +I+ L+L+
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLE----- 90
Query: 62 KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ + N TPL+ A + ++ V LL RG
Sbjct: 91 ------RDVDINIYDWNGG----TPLLYAVRGNHVKCVEALLARG 125
Score = 41.6 bits (99), Expect = 5e-05
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 23/104 (22%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
SAL A +V LL +I +G L A++ + + ++ +L
Sbjct: 69 RESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA----- 123
Query: 62 KPESEFKG---HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+G ++ TP+ LA LG ++ ++
Sbjct: 124 ------RGADLTTEADS---GYTPMDLAVALGYRKVQQVIENHI 158
Score = 39.3 bits (93), Expect = 3e-04
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
+ A G L+ + L +G
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKG 25
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 48.0 bits (115), Expect = 6e-07
Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 16/101 (15%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
+ L A + ++ ++ L + + G AL+ A +I++++
Sbjct: 73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE 132
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ G T L AA G +IV LLL +G
Sbjct: 133 LNQQNKLGD----------TALHAAAWKGYADIVQLLLAKG 163
Score = 43.8 bits (104), Expect = 2e-05
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 18/102 (17%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKV----RDG--ALH-AIQCDEINILKLILDWQKC 60
G +AL A +V+ L + P+I++ + G ALH A +I++L+L
Sbjct: 106 GSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA---- 161
Query: 61 HKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
++ + N +A ++
Sbjct: 162 KGARTDLR---NIEKK----LAFDMATNAACASLLKKKQGTD 196
Score = 30.3 bits (69), Expect = 0.50
Identities = 2/22 (9%), Positives = 3/22 (13%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
+ A L
Sbjct: 14 VKVFRALYTFEPRTPDELYIEE 35
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 48.3 bits (116), Expect = 6e-07
Identities = 15/102 (14%), Positives = 42/102 (41%), Gaps = 19/102 (18%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG---ALH-AIQCDEINILKLILDWQKC 60
G +AL A+ ++ VK + + G + + A+ ++++I+ L
Sbjct: 95 GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS---- 150
Query: 61 HKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ ++ D ++ + + + G ++++ LLL+
Sbjct: 151 -------EI-PSTFDLAILLSCIHITIKNGHVDMMILLLDYM 184
Score = 48.3 bits (116), Expect = 7e-07
Identities = 23/101 (22%), Positives = 31/101 (30%), Gaps = 16/101 (15%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
L A D +VK LL S G AL+ A+ + +KL +
Sbjct: 62 NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK----K 117
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
F G K T A L + IV+ L
Sbjct: 118 NWRLMFYG----KTGWK--TSFYHAVMLNDVSIVSYFLSEI 152
Score = 44.1 bits (105), Expect = 2e-05
Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 18/93 (19%)
Query: 15 AIIKNDVMMVKYLLSLPSIKVRDG----ALH-AIQCDEINILKLILDWQKCHKPESEFKG 69
I +K LS D A + AI + + ++ +L+
Sbjct: 6 RINTWKSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLN----AGALKNLLE 61
Query: 70 HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ PL AA L +IV +LL G
Sbjct: 62 N---------EFPLHQAATLEDTKIVKILLFSG 85
Score = 42.9 bits (102), Expect = 4e-05
Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 25/102 (24%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG---ALH-AIQCDEINILKLILDWQKC 60
+S + I V M+ LL + + AI +I +L+ +
Sbjct: 161 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFK---- 216
Query: 61 HKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
N + + L EI +++E+
Sbjct: 217 -------YD-INIY------SANLENVLLDDAEIAKMIIEKH 244
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 48.2 bits (116), Expect = 7e-07
Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 22/104 (21%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G +AL A + K LL +I+ G LH A+ D + ++++
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR----- 111
Query: 62 KPESEFKGHCNSNDFPKCI---TPLMLAAQLGRLEIVALLLERG 102
+ + + TPL+LAA+L ++ L+
Sbjct: 112 ------NRATDLDA--RMHDGTTPLILAARLAVEGMLEDLINSH 147
Score = 45.9 bits (110), Expect = 4e-06
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G + L A M++ L++ + G ALH A + ++ ++L +
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK----N 179
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ + N+ + TPL LAA+ G E +LL+
Sbjct: 180 GANKDMQ---NNREE----TPLFLAAREGSYETAKVLLDHF 213
Score = 44.8 bits (107), Expect = 9e-06
Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 17/108 (15%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G SAL A N+V LL ++ L A + K++LD H
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD----H 212
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPH 109
+ H + P +A + +IV LL H + H
Sbjct: 213 FANRDITDHMDR-------LPRDIAQERMHHDIVRLLDLEHHHHHHHH 253
Score = 28.6 bits (65), Expect = 2.0
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 13/39 (33%)
Query: 81 TPLMLAAQLG-------------RLEIVALLLERGHCIP 106
TPLM+A+ G +++ + +G +
Sbjct: 12 TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH 50
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 48.3 bits (116), Expect = 7e-07
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 24/104 (23%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
S + A + V V L++ K+ L+ A + + +K +L+
Sbjct: 157 LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE----- 211
Query: 62 KPESEFKG---HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
G + +PL + E+ LL++ G
Sbjct: 212 ------SGADVNQGKGQD----SPLHAVVRTASEELACLLMDFG 245
Score = 45.9 bits (110), Expect = 4e-06
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 25/105 (23%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
S + A I + ++ L+S +I D LH A ++ +K++L
Sbjct: 59 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK----- 113
Query: 62 KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
G ++ TPL A G + V LLL+ G
Sbjct: 114 ------HGAQVNGVTADWH----TPLFNACVSGSWDCVNLLLQHG 148
Score = 39.4 bits (93), Expect = 6e-04
Identities = 11/98 (11%), Positives = 24/98 (24%), Gaps = 27/98 (27%)
Query: 15 AIIKNDVMMVKYLLSL--------PSIKVRDGA--LHAIQCDEINILKLILDWQKCHKPE 64
+ L+ DG+ + ++L+
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAG---PRDFPGIRLL---------- 48
Query: 65 SEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ D +P+ AA G + L+ +G
Sbjct: 49 ----SNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQG 82
Score = 31.7 bits (73), Expect = 0.16
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 17/100 (17%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL-PSI-KVRDG--ALH-AIQCDEINILKLILDWQKCHK 62
+ L A VK LL + + + LH ++ + L++D
Sbjct: 190 LGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMD----FG 245
Query: 63 PESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+++ K N+ P+ L L + L G
Sbjct: 246 ADTQAK---NAEGK----RPVELVPPESPLAQL-FLEREG 277
Score = 29.8 bits (68), Expect = 0.68
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 85 LAAQLGRLEIVALLLERG 102
+ + + L+ RG
Sbjct: 1 MGSSHHHHHHSSGLVPRG 18
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 47.5 bits (114), Expect = 1e-06
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 13/101 (12%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G + A I V ++K LS + G A A ++ LK +
Sbjct: 72 GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK----R 127
Query: 62 KPESEFKGHCNSNDFPKCI---TPLMLAAQLGRLEIVALLL 99
+ + T LM AA+ G +E++ +LL
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 168
Score = 47.5 bits (114), Expect = 1e-06
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 25/105 (23%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G + L A+ + +V+ LL P ++ ++G A + +LKL L
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS----- 93
Query: 62 KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
KG C+ F T M AA G+++ + L +RG
Sbjct: 94 ------KGADVNECDFYGF----TAFMEAAVYGKVKALKFLYKRG 128
Score = 43.6 bits (104), Expect = 3e-05
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 22/107 (20%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSLPSIKV----RDG--ALH-AIQCDEIN----ILKLIL 55
G +AL A K V ++K LL V G AL A+ + + I L+L
Sbjct: 147 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL 206
Query: 56 DWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
D H + +G TPL+LA + L +V LLE+
Sbjct: 207 D----HGADVNVRGERGK-------TPLILAVEKKHLGLVQRLLEQE 242
Score = 42.5 bits (101), Expect = 5e-05
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 37/95 (38%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEF 67
G + L A+ K + +V+ LL ++ EIN
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLE------QEHI-------EIND----------------- 248
Query: 68 KGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+S+ T L+LA +L +I LL +RG
Sbjct: 249 ---TDSDGK----TALLLAVELKLKKIAELLCKRG 276
Score = 42.5 bits (101), Expect = 6e-05
Identities = 23/95 (24%), Positives = 30/95 (31%), Gaps = 37/95 (38%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEF 67
L A+ DV +V+ LL GA N+
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEG-------GA---------NV----------------- 31
Query: 68 KGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
N + TPL A Q+ R +IV LLL G
Sbjct: 32 ----NFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62
Score = 38.2 bits (90), Expect = 0.001
Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 30/115 (26%)
Query: 8 GVSALQTAIIKNDVMMVKYLLS-------------LPSIKVRDG--ALH-AIQCDEINIL 51
G +A A + V +K+L + G AL A + + +L
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 164
Query: 52 KLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGR----LEIVALLLERG 102
K++L E N+ D L+ A I LLL+ G
Sbjct: 165 KILL---------DEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDHG 209
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 47.5 bits (114), Expect = 1e-06
Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 22/117 (18%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILD----- 56
G L A + + +YL+S +G L A + +L+ ++
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD 165
Query: 57 --------WQKCHKPESEF--KGHCNSNDFPKC-ITPLMLAAQLGRLEIVALLLERG 102
+ + ++ GH N K T L +AA G E++ LL++
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR 222
Score = 46.7 bits (112), Expect = 2e-06
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 25/102 (24%)
Query: 11 ALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCHKPE 64
A D V LL + DG ALH A D ++++K +++
Sbjct: 43 VFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE-------- 94
Query: 65 SEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
G ++ + PL AA G L+I L+ +G
Sbjct: 95 ---NGANINQPDNEGW----IPLHAAASCGYLDIAEYLISQG 129
Score = 42.1 bits (100), Expect = 7e-05
Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 24/105 (22%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSLP-SIKVRDG----ALHAIQCDEINILKLILDWQKCH 61
+ Q ++ + KV+ L A + + +L+
Sbjct: 7 KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLE----- 61
Query: 62 KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+G + N + T L A +++V L+E G
Sbjct: 62 ------RGADINYANVDGL----TALHQACIDDNVDMVKFLVENG 96
Score = 39.0 bits (92), Expect = 8e-04
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 17/86 (19%)
Query: 23 MVKYLLS---LPSIKVRDG--ALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF 76
++L S + G ALH A +LKL++ + + K D
Sbjct: 181 ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ----ARYDVNIK----DYD- 231
Query: 77 PKCITPLMLAAQLGRLEIVALLLERG 102
TPL AA G+ E +L+E
Sbjct: 232 --GWTPLHAAAHWGKEEACRILVENL 255
Score = 35.6 bits (83), Expect = 0.011
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G +AL A K ++K L+ +IK DG LH A + +++++ +
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE----N 254
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ E N T +A + + L ++
Sbjct: 255 LCDMEAV---NKVGQ----TAFDVADEDILGYLEELQKKQN 288
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 47.0 bits (113), Expect = 1e-06
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G + L A M++ L++ + G ALH A + ++ ++L +
Sbjct: 92 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK----N 147
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ + N+ + TPL LAA+ G E +LL+
Sbjct: 148 GANKDMQ---NNREE----TPLFLAAREGSYETAKVLLDHF 181
Score = 46.2 bits (111), Expect = 2e-06
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G SAL A N+V LL ++ L A + K++LD H
Sbjct: 125 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD----H 180
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ H + P +A + +IV LL E
Sbjct: 181 FANRDITDHMDR-------LPRDIAQERMHHDIVRLLDEYN 214
Score = 45.5 bits (109), Expect = 4e-06
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 18/102 (17%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G +AL A + K LL +I+ G LH A+ D + ++++
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR----- 79
Query: 62 KPESEFKGHCNSNDFPKC-ITPLMLAAQLGRLEIVALLLERG 102
+ + TPL+LAA+L ++ L+
Sbjct: 80 ------NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 115
Score = 39.3 bits (93), Expect = 4e-04
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 18/87 (20%)
Query: 23 MVKYLLS----LPSIKVRDG--ALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSND 75
++ + L + R G ALH A + + K +L+ ++ + ++
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE----ASADANIQ---DNMG 58
Query: 76 FPKCITPLMLAAQLGRLEIVALLLERG 102
TPL A + +L+
Sbjct: 59 R----TPLHAAVSADAQGVFQILIRNR 81
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 46.9 bits (112), Expect = 2e-06
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 25/107 (23%)
Query: 6 FQGVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQK 59
+ L A + ++ +V+ + PS +G ALH AI +I+ ++
Sbjct: 19 LNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLIT--- 75
Query: 60 CHKPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
G +S+ + TPL AA I L++ G
Sbjct: 76 --------AGANVNSPDSHGW----TPLHCAASCNDTVICMALVQHG 110
Score = 29.5 bits (67), Expect = 0.74
Identities = 12/99 (12%), Positives = 23/99 (23%), Gaps = 18/99 (18%)
Query: 8 GVSALQTAII--KNDVMMVKYLLSL---PSIKVRDG--ALHAIQCDEINILKLILDWQKC 60
G +A + + YL + + AL + + L + +
Sbjct: 121 GATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDEL-SFREGESV 179
Query: 61 HKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLL 99
+ T AA G+ V
Sbjct: 180 TVLRRDGPEE----------TDWWWAALHGQEGYVPRNY 208
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 45.5 bits (109), Expect = 2e-06
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 25/105 (23%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G + L A + +V++LL P + + AL A +I+K++LD
Sbjct: 36 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD----- 90
Query: 62 KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
G + N TPL+ A ++ V +LLE G
Sbjct: 91 ------CGVDVNEYDWNGG----TPLLYAVHGNHVKCVKMLLESG 125
Score = 43.1 bits (103), Expect = 1e-05
Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 25/105 (23%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
SAL A K +VK LL + +G L A+ + + +K++L+
Sbjct: 69 RESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE----- 123
Query: 62 KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
G + + + LA LG + ++
Sbjct: 124 ------SGADPTIETDSGY----NSMDLAVALGYRSVQQVIESHL 158
Score = 42.4 bits (101), Expect = 3e-05
Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
++ + +++ + + + +G L A +I +++ +L +
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ----N 58
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ + + L LA G +IV +LL+ G
Sbjct: 59 GADPQLL---GKGRE----SALSLACSKGYTDIVKMLLDCG 92
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 46.3 bits (111), Expect = 2e-06
Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 18/104 (17%)
Query: 8 GVSALQTAIIKNDVMMVKYLLS------LPSIKVRDG--ALH-AIQCDEINILKLILDWQ 58
G L ++ + +LLS L G H A + ++K + D
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD-- 93
Query: 59 KCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ KP+ + T L LA E+ L+E G
Sbjct: 94 RPLKPDLNKI---TNQGV----TCLHLAVGKKWFEVSQFLIENG 130
Score = 45.9 bits (110), Expect = 3e-06
Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 21/104 (20%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPS-----IKVRDG--ALH-AIQCDEINILKLILDWQK 59
G + A ++ +VK L P G LH A+ + + +++
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE--- 128
Query: 60 CHKPESEFKG-HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
G D PL AA +G L+++ LL G
Sbjct: 129 --------NGASVRIKDK-FNQIPLHRAASVGSLKLIELLCGLG 163
Score = 44.4 bits (106), Expect = 1e-05
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 15/99 (15%)
Query: 11 ALQTAIIKNDV-MMVKYLLS---LPSIKVRDG--ALH-AIQCDEINILKLILDWQKCHKP 63
L A ++N+ + + L S L K +DG LH ++ I +L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS----KME 60
Query: 64 ESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ + + + TP +A +G LE+V L +R
Sbjct: 61 NVNLDDYPDDSGW----TPFHIACSVGNLEVVKSLYDRP 95
Score = 43.2 bits (103), Expect = 2e-05
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 18/102 (17%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKC 60
QGV+ L A+ K + ++L+ IK + LH A + +++L+
Sbjct: 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG---- 161
Query: 61 HKPESEFKGHCNSNDFPKC-ITPLMLAAQLGRLEIVALLLER 101
G N K TPL A G + LL+E+
Sbjct: 162 -------LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
Score = 31.6 bits (73), Expect = 0.15
Identities = 6/23 (26%), Positives = 7/23 (30%), Gaps = 1/23 (4%)
Query: 81 TPLMLAAQLGRLEIVA-LLLERG 102
PL A V LL +
Sbjct: 4 YPLHQACMENEFFKVQELLHSKP 26
Score = 30.5 bits (70), Expect = 0.39
Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 20/100 (20%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKV----RDG--ALH-AIQCDEINILKLILDWQKC 60
L A + +++ L L V + G L A+ + L+++
Sbjct: 140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA 199
Query: 61 HKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLE 100
+ KG +A ++ L
Sbjct: 200 EYDLVDNKGA----------KAEDVALN---EQVKKFFLN 226
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 46.5 bits (111), Expect = 2e-06
Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 25/105 (23%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
++ L + ++ + +V+ ++ PS+ +G ALH A+ I+K ++
Sbjct: 37 PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ----- 91
Query: 62 KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
G +S+ + TPL AA +++ L+E G
Sbjct: 92 ------FGVNVNAADSDGW----TPLHCAASCNNVQVCKFLVESG 126
Score = 44.9 bits (107), Expect = 8e-06
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 14/104 (13%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G++AL A+ +VK+L+ + DG LH A C+ + + K +++
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE----S 125
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCI 105
+D + G + L +
Sbjct: 126 GAAVFAM---TYSDMQTA-ADKCEEMEEGYTQCSQFLYGVQEKM 165
Score = 42.2 bits (100), Expect = 5e-05
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 24/104 (23%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL-PSIKVRDG---ALH-AIQCDEINILKLILDWQKCHK 62
G +L N ++ +K L + E ++++ I+
Sbjct: 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIY------ 58
Query: 63 PESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ N IT L A G EIV L++ G
Sbjct: 59 -----EVDDPSLPNDEG----ITALHNAVCAGHTEIVKFLVQFG 93
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 45.1 bits (108), Expect = 3e-06
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 16/97 (16%)
Query: 11 ALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALHAIQCDEINILKLILDWQKCHKPES 65
L +A + D+ + LL + + G AL ++ I + +L
Sbjct: 8 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLL----RGANP 63
Query: 66 EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ K + F + AA+ G L+ + LLE
Sbjct: 64 DLK---DRTGF----AVIHDAARAGFLDTLQTLLEFQ 93
Score = 43.1 bits (103), Expect = 1e-05
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 22/104 (21%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G + + A + ++ LL +I+ +G LH A + + +++ ++
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK----- 124
Query: 62 KPESEFKGHCNSNDFPKCI---TPLMLAAQLGRLEIVALLLERG 102
N + T LA GR E+V+L+ G
Sbjct: 125 ------HTASNVGH--RNHKGDTACDLARLYGRNEVVSLMQANG 160
Score = 38.5 bits (91), Expect = 5e-04
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 18/101 (17%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G +ALQ + + + LL P +K R G +H A + ++ L+ +L+
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLE----F 92
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ + + ++ PL LAA+ G L +V L++
Sbjct: 93 QADVNIE---DNEGN----LPLHLAAKEGHLRVVEFLVKHT 126
Score = 36.2 bits (85), Expect = 0.004
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
L AA G LE + LL+
Sbjct: 7 NELASAAARGDLEQLTSLLQNN 28
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 45.1 bits (108), Expect = 4e-06
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 20/103 (19%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKVRDG------ALH-AIQCDEINILKLILDWQKC 60
L A DV VK L ++ S+ RD LH A + +++++ +L
Sbjct: 8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ---- 63
Query: 61 HKPESEFKG-HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
G ++ D PL A G E+ LL++ G
Sbjct: 64 -------HGADVHAKDKGGL-VPLHNACSYGHYEVAELLVKHG 98
Score = 30.0 bits (69), Expect = 0.36
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 18/101 (17%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G+ L A + + L+ ++ LH A + I KL+L H
Sbjct: 75 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ----H 130
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ K N + TPL L G +I LL
Sbjct: 131 GADPTKK---NRDGN----TPLDLVKD-GDTDIQDLLRGDA 163
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 46.1 bits (110), Expect = 4e-06
Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 29/111 (26%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSI------KVRDG--ALH-AIQC---DEINILKL-- 53
SAL A D M+ Y+L+ + R+G AL D++ KL
Sbjct: 199 ERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLV 258
Query: 54 -----ILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLL 99
+ K ++KG T L AAQ+ + IV L+
Sbjct: 259 EKGAKVDYDGAARKDSEKYKGR----------TALHYAAQVSNMPIVKYLV 299
Score = 44.6 bits (106), Expect = 1e-05
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 18/102 (17%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKV----RDG--ALH-AIQCDEINILKLILDWQKC 60
G +AL A +++ +VKYL+ DG + A Q I ++ ++
Sbjct: 279 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ---- 334
Query: 61 HKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
E ++ D T LA IV +
Sbjct: 335 QGASVEAV---DATDH----TARQLAQANNHHNIVDIFDRCR 369
Score = 44.2 bits (105), Expect = 2e-05
Identities = 12/97 (12%), Positives = 23/97 (23%), Gaps = 17/97 (17%)
Query: 8 GVSALQTAIIKNDVMMVKYLLS---LPSIKVRDG--ALHAIQCDEINILKLILDWQKCHK 62
+ + + + + +P+ + LH I + I
Sbjct: 61 SLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSYAITEPITR------ 114
Query: 63 PESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLL 99
+ N D T L A E L+
Sbjct: 115 -----ES-VNIIDPRHNRTVLHWIASNSSAEKSEDLI 145
Score = 44.2 bits (105), Expect = 2e-05
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 27/112 (24%)
Query: 8 GVSALQTAIIKN---DVMMVKYLLS-----------LPSIKVRDG--ALH-AIQCDEINI 50
G++AL V K L+ + G ALH A Q + I
Sbjct: 235 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPI 294
Query: 51 LKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+K ++ + +K + + G TP+MLAAQ GR+E+V L+++G
Sbjct: 295 VKYLVGEKGSNKDKQDEDGK----------TPIMLAAQEGRIEVVMYLIQQG 336
Score = 33.8 bits (78), Expect = 0.042
Identities = 10/107 (9%), Positives = 27/107 (25%), Gaps = 25/107 (23%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPS-----------IKVRDG--ALH-AIQCDEINILKL 53
+ L + + L+ + D L A+ ++
Sbjct: 125 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAY 184
Query: 54 ILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLE 100
++ + N ++ + L AA ++ +L
Sbjct: 185 LMK----AGADPTIY---NKSER----SALHQAAANRDFGMMVYMLN 220
Score = 31.5 bits (72), Expect = 0.26
Identities = 3/39 (7%), Positives = 7/39 (17%), Gaps = 3/39 (7%)
Query: 67 FKGHCNSNDFPKC---ITPLMLAAQLGRLEIVALLLERG 102
+ G+ + P G +
Sbjct: 46 YDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNL 84
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 45.9 bits (110), Expect = 4e-06
Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 24/104 (23%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
S + A + V V L++ K+ L+ A + + +K +L+
Sbjct: 101 LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE----- 155
Query: 62 KPESEFKG---HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
G + +PL A+ E+ LL++ G
Sbjct: 156 ------SGADVNQGKGQD----SPLHAVARTASEELACLLMDFG 189
Score = 43.6 bits (104), Expect = 2e-05
Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 24/104 (23%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL-PSI-KVRDG--ALH-AIQCDEINILKLILDWQKCHK 62
+ L A + V LL S+ D +H A + + + ++
Sbjct: 69 WHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIA------ 122
Query: 63 PESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
G H S+ TPL LA + + V LLE G
Sbjct: 123 -----YGGNIDHKISHLG----TPLYLACENQQRACVKKLLESG 157
Score = 42.4 bits (101), Expect = 5e-05
Identities = 12/100 (12%), Positives = 23/100 (23%), Gaps = 17/100 (17%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALHAIQCDEINILKLILDWQKCHK 62
S L + L+ K +G + + E + +L L+ +
Sbjct: 166 QDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVE-LVPPESPLAQLFLE----RE 220
Query: 63 PESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
C +I L+L
Sbjct: 221 GPPSLMQLCRL-------RIRKCFGIQQHHKITKLVLPED 253
Score = 39.3 bits (93), Expect = 6e-04
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
+P+ AA G + L+ +G
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQG 26
Score = 37.8 bits (89), Expect = 0.002
Identities = 21/95 (22%), Positives = 29/95 (30%), Gaps = 38/95 (40%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEF 67
VS L A + + VK LL GA ++N
Sbjct: 36 HVSPLHEACLGGHLSCVKILLK-------HGA-------QVNG----------------- 64
Query: 68 KGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
++ TPL A G + V LLL+ G
Sbjct: 65 ---VTADWH----TPLFNACVSGSWDCVNLLLQHG 92
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 45.1 bits (108), Expect = 4e-06
Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 22/105 (20%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKC 60
+G + L A+ ND+ + K L+ +++ A IL +L
Sbjct: 38 EGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLK---- 93
Query: 61 HKPESEFKGHCNSNDFPKCI---TPLMLAAQLGRLEIVALLLERG 102
+ N L+ AA+ G ++ V LLLE G
Sbjct: 94 -------HATPDLNK--HNRYGGNALIPAAEKGHIDNVKLLLEDG 129
Score = 40.9 bits (97), Expect = 1e-04
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
+ L+ A ++ + + L +G L+ A+ ++I I K ++D
Sbjct: 6 VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID----R 61
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ + NS +P + A GR EI+A +L+
Sbjct: 62 GADINLQ---NSISD----SPYLYAGAQGRTEILAYMLKHA 95
Score = 40.5 bits (96), Expect = 2e-04
Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 32/112 (28%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL----PSIKVRDG--ALH-AIQCDEINILKLILDWQKC 60
S A + ++ Y+L + R G AL A + I+ +KL+L+
Sbjct: 72 SDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE---- 127
Query: 61 HKPESEFKG-----HCNSNDFPKCITPLMLAAQL-----GRLEIVALLLERG 102
G N + T L+ A L +IV LL+E G
Sbjct: 128 -------DGREDIDFQNDFGY----TALIEAVGLREGNQLYQDIVKLLMENG 168
Score = 39.4 bits (93), Expect = 4e-04
Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 23/105 (21%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKV----RDG--ALH-AIQCDEIN-----ILKLIL 55
G +AL A K + VK LL + G AL A+ E N I+KL++
Sbjct: 106 GGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM 165
Query: 56 DWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLE 100
+ + + K N T + A Q G EI +L +
Sbjct: 166 E----NGADQSIK----DNS---GRTAMDYANQKGYTEISKILAQ 199
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 44.0 bits (105), Expect = 5e-06
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALHAIQCDEINILKLILDWQKCHK 62
+ L TA + V V+ LL P+ R G + + + +L+L
Sbjct: 12 SDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLL------ 65
Query: 63 PESEFKG-HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
G N D P+ AA+ G L+ + +L G
Sbjct: 66 -----HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG 101
Score = 40.9 bits (97), Expect = 6e-05
Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 27/106 (25%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG---ALH-AIQCDEINILKLILDWQKC 60
G +Q + + + LL P+ +H A + ++ L ++
Sbjct: 45 GRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR---- 99
Query: 61 HKPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
G C++ P+ LA + G +I L
Sbjct: 100 -------AGARLDVCDAWGR----LPVDLAEEQGHRDIARYLHAAT 134
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 44.3 bits (106), Expect = 7e-06
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 24/105 (22%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKV----RDG--ALH-AIQCDEINILKLILDWQKC 60
+ + T + + + V+ L + G LH A + ++++++
Sbjct: 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM---- 60
Query: 61 HKPESEFKG---HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+G + + TPL LAA G +IV LL+
Sbjct: 61 -------RGARINVMNRG---DDTPLHLAASHGHRDIVQKLLQYK 95
Score = 40.5 bits (96), Expect = 1e-04
Identities = 16/108 (14%), Positives = 29/108 (26%), Gaps = 25/108 (23%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
+ L A +V+ LL + G LH A + + + ++
Sbjct: 72 DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA----- 126
Query: 62 KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCI 105
G CN P+ A R + + G +
Sbjct: 127 ------NGALVSICNKYGE----MPVDKAKAPLRELLRERAEKMGQNL 164
Score = 35.9 bits (84), Expect = 0.006
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 3/30 (10%)
Query: 73 SNDFPKCITPLMLAAQLGRLEIVALLLERG 102
S +F + + + G V L L+
Sbjct: 2 SPEF---MDDIFTQCREGNAVAVRLWLDNT 28
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 43.6 bits (104), Expect = 1e-05
Identities = 15/106 (14%), Positives = 32/106 (30%), Gaps = 27/106 (25%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG---ALH-AIQCDEINILKLILDWQKC 60
G +Q + + + LL P+ +H A + ++ L ++
Sbjct: 45 GRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR---- 99
Query: 61 HKPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
G ++ P+ LA +LG ++ L
Sbjct: 100 -------AGARLDVRDAWGR----LPVDLAEELGHRDVARYLRAAA 134
Score = 39.8 bits (94), Expect = 2e-04
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
L AA GR+E V LLE G
Sbjct: 14 DWLATAAARGRVEEVRALLEAG 35
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 41.6 bits (99), Expect = 2e-05
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G + L A VK LLS + + +DG LH A + I+KL+L
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA----K 64
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ + + + TP LA + G EIV LL +G
Sbjct: 65 GADVNAR---SKDGN----TPEHLAKKNGHHEIVKLLDAKG 98
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 42.8 bits (102), Expect = 2e-05
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G +AL A+ N + + + LLS + K G L +I + +L+ H
Sbjct: 68 GSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLE----H 123
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ N TPL++A++ GR EIV LLE G
Sbjct: 124 GANVNDR---NLEGE----TPLIVASKYGRSEIVKKLLELG 157
Score = 37.4 bits (88), Expect = 0.002
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 17/99 (17%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G + L +II M +LL + + +G L A + I+K +L+
Sbjct: 101 GKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLE----L 156
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLE 100
+ + + T A GR E++ + E
Sbjct: 157 GADISAR---DLTGL----TAEASARIFGRQEVIKIFTE 188
Score = 36.6 bits (86), Expect = 0.004
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPLM+A LG + L+E
Sbjct: 37 TPLMVACMLGMENAIDKLVENF 58
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 42.3 bits (101), Expect = 3e-05
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G + L A + +V+ LL + G L A + I++++L +
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK----N 102
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ + TPL LAA G LEIV +LL+ G
Sbjct: 103 GADVNAN---DMEGH----TPLHLAAMFGHLEIVEVLLKNG 136
Score = 42.0 bits (100), Expect = 4e-05
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 17/98 (17%)
Query: 11 ALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCHKPE 64
L A V+ L++ + + G LH A + I++++L + +
Sbjct: 17 KLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK----NGAD 72
Query: 65 SEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ TPL LAA G LEIV +LL+ G
Sbjct: 73 VNAV---DHAGM----TPLRLAALFGHLEIVEVLLKNG 103
Score = 37.0 bits (87), Expect = 0.002
Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 17/99 (17%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G++ L+ A + + +V+ LL + +G LH A + I++++L +
Sbjct: 80 GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK----N 135
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLE 100
+ + T ++ G ++ +L +
Sbjct: 136 GADVNAQ----DKF---GKTAFDISIDNGNEDLAEILQK 167
Score = 35.4 bits (83), Expect = 0.006
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
L+ AA+ GR + V +L+ G
Sbjct: 16 KKLLEAARAGRDDEVRILMANG 37
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 42.0 bits (100), Expect = 3e-05
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 25/105 (23%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL----PSIKVRDG--ALHAIQCDEINILKLILDWQKCH 61
L A + DV V+ LL P R G AL + I +L
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLK----- 56
Query: 62 KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+G +++ +P+ AA+ G L+ + +L+E G
Sbjct: 57 ------QGASPNVQDTSGT----SPVHDAARTGFLDTLKVLVEHG 91
Score = 37.8 bits (89), Expect = 0.001
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 18/99 (18%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G +ALQ + + LL P+++ G +H A + ++ LK++++ H
Sbjct: 36 GKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE----H 90
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLE 100
+ + P+ LA Q G +V+ L
Sbjct: 91 GADVNVP---DGTGA----LPIHLAVQEGHTAVVSFLAA 122
Score = 37.4 bits (88), Expect = 0.001
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 26/103 (25%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G S + A + +K L+ ++ G +H A+Q ++ +
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA------ 121
Query: 62 KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLE 100
++ TPL LA Q G ++V +L
Sbjct: 122 ------AESDLHRRDARGL----TPLELALQRGAQDLVDILQG 154
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 42.2 bits (99), Expect = 7e-05
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 4/96 (4%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALH-AIQCDEINILKLILDWQKCHKPESE 66
+ + A ++ V L++ L I+ ++ +L I P +
Sbjct: 250 RLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIR--FLLSIPGIK 307
Query: 67 FKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ L LA +LG ALLL
Sbjct: 308 ALAPTATIP-GDANELLRLALRLGNQGACALLLSIP 342
Score = 40.7 bits (95), Expect = 3e-04
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 15/86 (17%)
Query: 23 MVKYLLS---LPSIKVRDG--ALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF 76
+ LL+ + + + A A + +++L + + P N
Sbjct: 110 TLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE----LAPTEIMAMIQAENY- 164
Query: 77 PKCITPLMLAAQLGRLEIVALLLERG 102
LAA+ G L ++ L E
Sbjct: 165 ----HAFRLAAENGHLHVLNRLCELA 186
Score = 36.1 bits (83), Expect = 0.008
Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 18/110 (16%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSL-----PSIKVRDG--ALH-AIQCDEINILKLILDWQ 58
+ A + A + ++ L L ++ + A A + +++L + +
Sbjct: 127 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE-- 184
Query: 59 KCHKPESEFKGHCNSNDFPKCITPLMLAA-QLGRLEIVALLLERGHCIPY 107
P N AA G ++ LL+ + Y
Sbjct: 185 --LAPTEATAMIQAENY-----YAFRWAAVGRGHHNVINFLLDCPVMLAY 227
Score = 35.7 bits (82), Expect = 0.012
Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 28/111 (25%)
Query: 7 QGVSALQTAIIKND---VMMVKYLLSLPSIK--------VRDG--ALH-AIQCDEINILK 52
QG L+ I +ND + +++LLS+P IK D L A++
Sbjct: 277 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 336
Query: 53 LILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGH 103
L+L +N++ + GRL++ A+ LE H
Sbjct: 337 LLLS-------IPSVLALTKANNY-------YINETGGRLDLRAVALEHHH 373
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 39.6 bits (94), Expect = 8e-05
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 23/104 (22%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G + L A + +VK LL + K ++G LH A + + ++KL+L+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE----- 56
Query: 62 KPESEFKG---HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
G + + TPL LAA+ G LE+V LLLE G
Sbjct: 57 ------AGADVNAKDKN---GRTPLHLAARNGHLEVVKLLLEAG 91
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 39.9 bits (94), Expect = 9e-05
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL LAA+ G LE+V LLLE G
Sbjct: 59 TPLHLAARNGHLEVVKLLLEAG 80
Score = 39.5 bits (93), Expect = 1e-04
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
L+ AA+ G+ + V +L+ G
Sbjct: 26 KKLLEAARAGQDDEVRILMANG 47
Score = 27.9 bits (63), Expect = 1.2
Identities = 3/17 (17%), Positives = 6/17 (35%)
Query: 86 AAQLGRLEIVALLLERG 102
+ + L+ RG
Sbjct: 1 GSSHHHHHHSSGLVPRG 17
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 40.0 bits (95), Expect = 1e-04
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G + L A + +VK LL + K ++G LH A + + ++KL+L+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE----A 57
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ K + N TPL LAA+ G LE+V LLLE G
Sbjct: 58 GADVNAK---DKNGR----TPLHLAARNGHLEVVKLLLEAG 91
Score = 39.3 bits (93), Expect = 2e-04
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G + L A + +VK LL + K ++G LH A + + ++KL+L+
Sbjct: 35 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE----A 90
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ K + N TPL LAA+ G LE+V LLLE G
Sbjct: 91 GADVNAK---DKNGR----TPLHLAARNGHLEVVKLLLEAG 124
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 40.4 bits (96), Expect = 1e-04
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G S L A + LL + + LH A NI++++L H
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK----H 89
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ K + T L A + E+V LL++ G
Sbjct: 90 GADVNAK---DMLKM----TALHWATEHNHQEVVELLIKYG 123
Score = 39.3 bits (93), Expect = 3e-04
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 16/97 (16%)
Query: 11 ALQTAIIKNDVMMVKYLLSL--PSIKVRDG--ALH-AIQCDEINILKLILDWQKCHKPES 65
L A V+ L++ P G LH A Q + +++L
Sbjct: 5 KLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLR----AGVSR 60
Query: 66 EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ + D TPL +AA G IV +LL+ G
Sbjct: 61 DAR---TKVDR----TPLHMAASEGHANIVEVLLKHG 90
Score = 36.6 bits (86), Expect = 0.002
Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
+ L A + +V+ LL + K ALH A + + +++L++ +
Sbjct: 67 DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK----Y 122
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALL 98
+ + S C T ++ G ++ +L
Sbjct: 123 GADVHTQ----SKF---CKTAFDISIDNGNEDLAEIL 152
Score = 34.3 bits (80), Expect = 0.013
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
L+ AA+ G+ + V +L+ G
Sbjct: 4 KKLLEAARAGQDDEVRILMANG 25
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 39.3 bits (93), Expect = 2e-04
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 17/98 (17%)
Query: 11 ALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCHKPE 64
L A V+ L++ + K G L+ A + I++++L + +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK----NGAD 72
Query: 65 SEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
++ F TPL LAA +G LEI +LL+ G
Sbjct: 73 VNAV---DAIGF----TPLHLAAFIGHLEIAEVLLKHG 103
Score = 33.9 bits (79), Expect = 0.014
Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 17/99 (17%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
G++ L A + +V+ LL + G LH A + I +++L H
Sbjct: 47 GLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK----H 102
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLE 100
+ + T ++ G ++ +L +
Sbjct: 103 GADVNAQDKFGK-------TAFDISIGNGNEDLAEILQK 134
Score = 33.9 bits (79), Expect = 0.016
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
L+ AA+ G+ + V +L+ G
Sbjct: 16 KKLLEAARAGQDDEVRILMANG 37
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 39.7 bits (93), Expect = 3e-04
Identities = 2/22 (9%), Positives = 8/22 (36%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
T L + + + ++ +
Sbjct: 156 TALEFVKRCQKPIALKMMEDYI 177
Score = 35.4 bits (82), Expect = 0.009
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
+ AA LG E L E+G
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKG 29
Score = 32.7 bits (75), Expect = 0.066
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 80 ITPLMLAAQLGRLEIVALLLERG 102
L R +I L+ +G
Sbjct: 43 YDVLRNNNDEARYKISMFLINKG 65
Score = 31.6 bits (72), Expect = 0.16
Identities = 13/112 (11%), Positives = 24/112 (21%), Gaps = 34/112 (30%)
Query: 10 SALQTAIIKNDVMMVKYLLS----LPSIKVRDGALH-----AIQCDEINILKLILDWQKC 60
+ A + L ++ L+ I +++
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN---- 63
Query: 61 HKPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVA------LLLERG 102
KG T Q G +I + LE+G
Sbjct: 64 -------KGADIKSRTKEGT----TLFFPLFQGGGNDITGTTELCKIFLEKG 104
Score = 31.2 bits (71), Expect = 0.23
Identities = 10/115 (8%), Positives = 28/115 (24%), Gaps = 32/115 (27%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQC------DEINILKLIL 55
L+ + + +L++ + ++G Q + K+ L
Sbjct: 42 LYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFL 101
Query: 56 DWQKCHKPESEFKG-HCNSNDFPKCITPLMLAAQLGRLEIV-------ALLLERG 102
+ KG + P + ++ + + G
Sbjct: 102 E-----------KGADITALYKPYK-IVVFKNIFNYFVDENEMIPLYKLIFSQSG 144
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 39.1 bits (91), Expect = 6e-04
Identities = 13/95 (13%), Positives = 22/95 (23%), Gaps = 38/95 (40%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEF 67
+ A + + +L+ D +
Sbjct: 7 NIMICNLAYSGKLDELKERILA-------DKS-------LATR----------------- 35
Query: 68 KGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ + T L A G EIV LL+ G
Sbjct: 36 ---TDQDSR----TALHWACSAGHTEIVEFLLQLG 63
Score = 39.1 bits (91), Expect = 6e-04
Identities = 29/101 (28%), Positives = 38/101 (37%), Gaps = 17/101 (16%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
+AL A +V++LL L + K G LH A I+K +L + H
Sbjct: 40 SRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLV-KGAH 98
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
G TPL AA R EI +LLE G
Sbjct: 99 VNAVNQNGC----------TPLHYAASKNRHEIAVMLLEGG 129
Score = 31.8 bits (72), Expect = 0.15
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 5/32 (15%)
Query: 71 CNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
C SN I LA E+ +L
Sbjct: 4 CVSN-----IMICNLAYSGKLDELKERILADK 30
Score = 31.0 bits (70), Expect = 0.25
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 19/102 (18%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKC 60
+A+ A K ++ MV LL +I+ +G LH A + + K ++ Q
Sbjct: 138 YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT-QGA 196
Query: 61 HKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ TPL +A G L ++ L G
Sbjct: 197 SIYIENKEEK----------TPLQVAK--GGLGLILKRLAEG 226
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 38.1 bits (88), Expect = 0.002
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL + LE+V L++ G
Sbjct: 133 TPLHWLTSIANLELVKHLVKHG 154
Score = 37.3 bits (86), Expect = 0.003
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
T L +AA+LG + IV LL+ G
Sbjct: 285 TCLNIAARLGNISIVDALLDYG 306
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.002
Identities = 39/247 (15%), Positives = 69/247 (27%), Gaps = 81/247 (32%)
Query: 2 FYLLF--QGVSA-----LQ----------TAIIKNDVMMVKYLLSLPSIKVRDGALHAIQ 44
+F QG + L+ +IK + L L + +
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF---SAETLSELIRTTLDAEKVFTQG 212
Query: 45 CDEINILKLILDW--QKCHKPESEFKGHCNSNDFPKCIT-PLMLAAQLGRLEIVALLLER 101
+ IL+W + P+ ++ P I+ PL+ QL + A LL
Sbjct: 213 LN-------ILEWLENPSNTPDKDYLLSI-----P--ISCPLIGVIQLAHYVVTAKLLGF 258
Query: 102 GHCIPYPHLPTCQCVQVCQNTDNLNSKPQPPSSIINIYRSKRFFSVRWNIYEVFKCSLFV 161
+L + S+ + I S W F
Sbjct: 259 TPGELRSYL---KGATGH-------SQGLVTAVAIAETDS-------WE--SFFVSVRKA 299
Query: 162 LTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQLSYDL 221
+T +F++ Y L P+++ +SL V S
Sbjct: 300 ITVLFFI-GVRCYEAYPNTSLP--------PSILEDSLENNEGVPS-------------- 336
Query: 222 GPMQVSV 228
PM +S+
Sbjct: 337 -PM-LSI 341
Score = 37.0 bits (85), Expect = 0.005
Identities = 27/196 (13%), Positives = 60/196 (30%), Gaps = 49/196 (25%)
Query: 65 SEFKGHCNSNDFPKCITPL--MLAAQLGRLEIVALLLERG---HCI-----PYPHLPTCQ 114
+F G+ +S P + +L L E L G H + +
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL---EGNDIHALAAKLLQENDTTLVK 118
Query: 115 CVQVCQN------TDNLNSKPQPPSSIINIYRSK--RFFSV--------------RWNIY 152
++ +N + S++ + ++ R ++Y
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR-DLY 177
Query: 153 EVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLD-------PTLV-AESLFAVAT 204
+ + V + + A +S + D E+ + L+ P+ +
Sbjct: 178 QTYHV--LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 205 VMSFCNLLFLCQLS-Y 219
+ S C L+ + QL+ Y
Sbjct: 236 I-S-CPLIGVIQLAHY 249
Score = 26.9 bits (59), Expect = 9.4
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 17/55 (30%)
Query: 172 VSVRLYDQQDLERKYWHFLDPT--LVA-----E--SLFAVATVMSF---CNLLFL 214
+ + +DL+ K L P A E +L ++A VMS ++F
Sbjct: 1739 MEKAAF--EDLKSK---GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFY 1788
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 33.4 bits (76), Expect = 0.052
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
T L AA + + + LLL+
Sbjct: 228 TALHYAALYNQPDCLKLLLKGR 249
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 31.9 bits (72), Expect = 0.18
Identities = 6/22 (27%), Positives = 7/22 (31%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
T L E + LLL
Sbjct: 207 TALHYCCLTDNAECLKLLLRGK 228
Score = 27.7 bits (61), Expect = 4.0
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 22/104 (21%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSL----PSIKVRDG----ALH-AIQCDEINILKLILDW 57
+AL A+ D + + L ++ + G ALH D LKL+L
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL-- 225
Query: 58 QKCHKPESEFKGHCNSNDFPKC-ITPLMLAAQLGRLEIVALLLE 100
+G + + TPL +A +L LL +
Sbjct: 226 ----------RGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 30.0 bits (68), Expect = 0.86
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 174 VRLYDQQDLE-RKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQLSYDL----GPMQVSV 228
V + Q E +Y + L+ A+ +S L SY L G V
Sbjct: 260 VIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVIS 319
Query: 229 GKMTEDIMKFSVLFGIIMLAFTVG 252
+ + + +V F +++ AF+VG
Sbjct: 320 KEYSIGQV-LTVFFSVLIGAFSVG 342
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 29.4 bits (65), Expect = 1.3
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
PL A LG + L L+RG
Sbjct: 270 GPLHHATILGHTGLACLFLKRG 291
Score = 28.2 bits (62), Expect = 3.0
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 17/100 (17%)
Query: 7 QGVSALQTAIIKNDVMMVKYLL-SLPSIKVRDG----ALH-AIQCDEINILKLILDWQKC 60
+ L A N ++ ++LL + ++ D LH A + L L +
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFL-KRGA 292
Query: 61 HKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLE 100
+ +G PL +A + +IV LL
Sbjct: 293 DLGARDSEGR----------DPLTIAMETANADIVTLLRL 322
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 3.6
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 17/83 (20%)
Query: 168 VAAYVSVRLYDQQDL----ERKYWHF-----LDPTLVAE--SLFAVATVMSFCNLLFLCQ 216
V Y + +D DL +Y++ L E +LF M F + FL Q
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR----MVFLDFRFLEQ 505
Query: 217 -LSYDLGPMQVSVGKMTEDIMKF 238
+ +D + G + + +
Sbjct: 506 KIRHD-STAWNASGSILNTLQQL 527
Score = 27.9 bits (61), Expect = 3.8
Identities = 43/261 (16%), Positives = 73/261 (27%), Gaps = 93/261 (35%)
Query: 9 VSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILK------LILDWQKCHK 62
+S + A + N K + +P L + D I + K L L W K
Sbjct: 22 LSVFEDAFVDN--FDCKDVQDMPK-----SILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 63 PESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNT 122
E E+V +E I Y L
Sbjct: 75 QE----------------------------EMVQKFVEEVLRINYKFL-----------M 95
Query: 123 DNLNSKPQPPSSIINIYRSKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQ--- 179
+ ++ + PS + +Y +R +N +VF V ++ Y +
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQR--DRLYNDNQVFA-KYNV----------SRLQPYLKLRQ 142
Query: 180 --QDLERKYWHFLD-------PTLVAESL--FAVATVMSF---------CN-----LLFL 214
+L +D + + + V M F CN L L
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 215 CQLSYDLGPMQVSVGKMTEDI 235
+L Y + P S + +I
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNI 223
>3eo7_A Putative nitroreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE FMN; 1.80A {Anabaena variabilis atcc
29413}
Length = 511
Score = 27.8 bits (61), Expect = 4.5
Identities = 12/133 (9%), Positives = 36/133 (27%), Gaps = 1/133 (0%)
Query: 24 VKYLLSLPSIKVRDGALHAIQCD-EINILKLILDWQKCHKPESEFKGHCNSNDFPKCITP 82
V LL + ++ A+ + +I E+ + +
Sbjct: 218 VNDLLYIDPLQEGAIAVLPLADLLDIQQNISPGCTALPSATETNYPQVPDGELLKYFHHH 277
Query: 83 LMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNTDNLNSKPQPPSSIINIYRSK 142
++A + + +++ + P C + ++ RS
Sbjct: 278 TQISASITGKLNLPTVIQEKSLEDKYNFPFCLKISTVSAPIYWGENLSDLEITMHKRRST 337
Query: 143 RFFSVRWNIYEVF 155
R ++ ++
Sbjct: 338 RAYNGEELTFDEL 350
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.141 0.446
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,857,641
Number of extensions: 214121
Number of successful extensions: 987
Number of sequences better than 10.0: 1
Number of HSP's gapped: 765
Number of HSP's successfully gapped: 255
Length of query: 256
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 165
Effective length of database: 4,160,982
Effective search space: 686562030
Effective search space used: 686562030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.0 bits)