RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4451
(256 letters)
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
9606]}
Length = 408
Score = 43.0 bits (100), Expect = 1e-05
Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 17/117 (14%)
Query: 11 ALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCHKPE 64
L A + +VK LL P++ LH A + + K +L +K +
Sbjct: 3 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAK 58
Query: 65 SEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQN 121
K + TPL AA++G +V LLLE + +
Sbjct: 59 VNAKAKDDQ-------TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 108
Score = 42.7 bits (99), Expect = 3e-05
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 7/96 (7%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEF 67
G++ L + V + L+ + A L + + +
Sbjct: 264 GLTPLHLVAQEGHVPVADVLIK------HGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 317
Query: 68 KGHCNSNDFPKC-ITPLMLAAQLGRLEIVALLLERG 102
+ + N K +PL AAQ G +IV LLL+ G
Sbjct: 318 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 353
Score = 41.5 bits (96), Expect = 5e-05
Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 28/127 (22%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILD---- 56
+ + L A + KYLL + K +D LH A + N++KL+L+
Sbjct: 32 KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 91
Query: 57 ------------------WQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALL 98
K + K TPL +AA+ G++ + LL
Sbjct: 92 PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 151
Query: 99 LERGHCI 105
LER
Sbjct: 152 LERDAHP 158
Score = 38.8 bits (89), Expect = 5e-04
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 80 ITPLMLAAQLGRLEIVALLLERG 102
+TPL +A+ +G L IV LL+RG
Sbjct: 1 LTPLHVASFMGHLPIVKNLLQRG 23
Score = 30.3 bits (67), Expect = 0.24
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 81 TPLMLAAQLGRLEIVALL 98
TPL +A +LG + + +L
Sbjct: 365 TPLAIAKRLGYISVTDVL 382
Score = 28.4 bits (62), Expect = 0.82
Identities = 25/185 (13%), Positives = 41/185 (22%), Gaps = 34/185 (18%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESE 66
+ L A MVK LL + + + E+
Sbjct: 65 DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS 124
Query: 67 FKGHCNSNDFPKCI----------------------------TPLMLAAQLGRLEIVALL 98
P + TPL +A L+IV LL
Sbjct: 125 QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 184
Query: 99 LERGHCI------PYPHLPTCQCVQVCQNTDNLNSKPQPPSSIINIYRSKRFFSVRWNIY 152
L RG Y L + +L ++ + + +
Sbjct: 185 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA 244
Query: 153 EVFKC 157
E+
Sbjct: 245 EMVAL 249
Score = 28.0 bits (61), Expect = 1.2
Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 28/130 (21%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALHAIQCDEINILKLILDWQKCHK 62
G++ L A+ N++ +VK LL P +G LH + L
Sbjct: 165 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 224
Query: 63 PESEFKG----HCNSNDFPKCI-------------------TPLMLAAQLGRLEIVALLL 99
+G H + + + TPL L AQ G + + +L+
Sbjct: 225 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 284
Query: 100 ERGHCIPYPH 109
+ G +
Sbjct: 285 KHGVMVDATT 294
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
{Legionella pneumophila [TaxId: 446]}
Length = 346
Score = 41.0 bits (95), Expect = 7e-05
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 6/94 (6%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESE 66
+ A + + +V L + + ++ ++ +L P +
Sbjct: 251 EMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLL-----SIPGIK 305
Query: 67 FKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLE 100
+ L LA +LG ALLL
Sbjct: 306 ALAPTATIPGDAN-ELLRLALRLGNQGACALLLS 338
Score = 38.3 bits (88), Expect = 6e-04
Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 13/109 (11%)
Query: 6 FQGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKP-- 63
+ A+ + ++ +LL P + + +H + E + I K
Sbjct: 195 ENYYAFRWAAVGRGHHNVINFLLDCP-VMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH 253
Query: 64 ----ESEFKGHCNSNDFPKC------ITPLMLAAQLGRLEIVALLLERG 102
S G + +C + L+ L+ + LL
Sbjct: 254 DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 302
Score = 36.0 bits (82), Expect = 0.003
Identities = 13/110 (11%), Positives = 31/110 (28%), Gaps = 16/110 (14%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSL-PSIKVRDG------ALHAI-QCDEINILKLILDWQ 58
+ A + A + ++ L L P+ + A + +++L + +
Sbjct: 125 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE-- 182
Query: 59 KCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYP 108
+ N A G ++ LL+ + Y
Sbjct: 183 LAPTEATAMIQAENYY------AFRWAAVGRGHHNVINFLLDCPVMLAYA 226
Score = 35.3 bits (80), Expect = 0.005
Identities = 18/117 (15%), Positives = 32/117 (27%), Gaps = 18/117 (15%)
Query: 6 FQGVSALQTAIIKNDVMMVKYLLSLPS----IKVRDG----ALH-AIQCDEINILKLILD 56
+ A I + L L + +KV A A + +++L + +
Sbjct: 88 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE 147
Query: 57 WQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTC 113
P N LAA+ G L ++ L E +
Sbjct: 148 ----LAPTEIMAMIQAENY-----HAFRLAAENGHLHVLNRLCELAPTEATAMIQAE 195
Score = 29.9 bits (66), Expect = 0.27
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSI 33
L+ A+ + LLS+PS+
Sbjct: 317 ANELLRLALRLGNQGACALLLSIPSV 342
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 154
Score = 37.3 bits (85), Expect = 5e-04
Identities = 13/99 (13%), Positives = 24/99 (24%), Gaps = 8/99 (8%)
Query: 7 QGVSALQTAII---KNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKP 63
+AL A+ + + +V +L+ + L
Sbjct: 44 PDETALHLAVRSVDRTSLHIVDFLVQNSG-----NLDKQTGKGSTALHYCCLTDNAECLK 98
Query: 64 ESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
TPL +A +L LL +
Sbjct: 99 LLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL 137
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 38.1 bits (87), Expect = 5e-04
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
T L +AA+LG + IV LL+ G
Sbjct: 261 TCLNIAARLGNISIVDALLDYG 282
Score = 37.7 bits (86), Expect = 8e-04
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 81 TPLMLAAQLGRLEIVALLLERGHCI 105
TPL + LE+V L++ G
Sbjct: 109 TPLHWLTSIANLELVKHLVKHGSNR 133
Score = 28.5 bits (62), Expect = 0.69
Identities = 16/123 (13%), Positives = 32/123 (26%), Gaps = 1/123 (0%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESE 66
G + L ++ +VK+L+ S ++ + + D
Sbjct: 106 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY 165
Query: 67 FKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNTDNLN 126
D T L + + + I + Q + T+
Sbjct: 166 LYPCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 224
Query: 127 SKP 129
SKP
Sbjct: 225 SKP 227
Score = 27.3 bits (59), Expect = 1.8
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH 41
G + L A ++ +V LL P I + G +
Sbjct: 258 NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVD 297
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
(Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 37.6 bits (86), Expect = 9e-04
Identities = 23/129 (17%), Positives = 36/129 (27%), Gaps = 34/129 (26%)
Query: 8 GVSALQTAIIKNDVMMVKYLLS----LPSIKVRDGALHAIQCDEINILKLILDWQKC--- 60
G +AL A K V ++K LL + G I + +
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207
Query: 61 HKPESEFKG--------HCNSNDFPKCI-------------------TPLMLAAQLGRLE 93
H + +G + T L+LA +L +
Sbjct: 208 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 267
Query: 94 IVALLLERG 102
I LL +RG
Sbjct: 268 IAELLCKRG 276
Score = 34.2 bits (77), Expect = 0.010
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 40 LHAIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLL 99
+ A+Q +++++++ +L E + N + TPL A Q+ R +IV LLL
Sbjct: 10 IKAVQNEDVDLVQQLL----------EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59
Query: 100 ERGHCIPYPHLPTCQCVQVC 119
G +
Sbjct: 60 RHGADPVLRKKNGATPFLLA 79
Score = 33.8 bits (76), Expect = 0.013
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 12/130 (9%)
Query: 41 HAIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLE 100
A ++ LK + + K T LM AA+ G +E++ +LL+
Sbjct: 111 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA-TALMDAAEKGHVEVLKILLD 169
Query: 101 R-----------GHCIPYPHLPTCQCVQVCQNTDNLNSKPQPPSSIINIYRSKRFFSVRW 149
G L + V T L + ++ +V
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229
Query: 150 NIYEVFKCSL 159
+ + L
Sbjct: 230 KHLGLVQRLL 239
Score = 31.9 bits (71), Expect = 0.066
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
L+ A Q +++V LLE G
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEGG 28
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 118
Score = 34.9 bits (78), Expect = 0.002
Identities = 10/89 (11%), Positives = 21/89 (23%)
Query: 79 CITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNTDNLNSKPQPPSSIINI 138
C M A + G L+ V + +G + + + + L +I
Sbjct: 2 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 61
Query: 139 YRSKRFFSVRWNIYEVFKCSLFVLTFMFW 167
+ V +
Sbjct: 62 NAPDKHHITPLLSAVYEGHVSCVKLLLSK 90
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 153
Score = 35.2 bits (79), Expect = 0.003
Identities = 12/88 (13%), Positives = 27/88 (30%)
Query: 81 TPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNTDNLNSKPQPPSSIINIYR 140
L+ AA+ G+ + V +L+ G L T Q ++ + + R
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63
Query: 141 SKRFFSVRWNIYEVFKCSLFVLTFMFWV 168
+K + ++ +
Sbjct: 64 TKVDRTPLHMAASEGHANIVEVLLKHGA 91
Score = 27.9 bits (60), Expect = 0.71
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 81 TPLMLAAQLGRLEIVALL 98
T ++ G ++ +L
Sbjct: 135 TAFDISIDNGNEDLAEIL 152
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId:
9606]}
Length = 156
Score = 34.9 bits (78), Expect = 0.003
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
T LA GR E+V+L+ G
Sbjct: 135 TACDLARLYGRNEVVSLMQANG 156
Score = 29.9 bits (65), Expect = 0.20
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 81 TPLMLAAQLGRLEIVALLLERGHCI 105
L AA G LE + LL+ +
Sbjct: 3 NELASAAARGDLEQLTSLLQNNVNV 27
Score = 24.8 bits (52), Expect = 8.9
Identities = 13/113 (11%), Positives = 27/113 (23%), Gaps = 1/113 (0%)
Query: 10 SALQTAIIKNDVMMVKYLLSL-PSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEFK 68
+ L +A + D+ + LL ++ ++G I + K
Sbjct: 3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62
Query: 69 GHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQN 121
L LE A + + P + +
Sbjct: 63 DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 115
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor
I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId:
10090]}
Length = 255
Score = 35.5 bits (80), Expect = 0.004
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
TPL A + LL G
Sbjct: 227 TPLGSALLRPNPILARLLRAHG 248
Score = 35.1 bits (79), Expect = 0.006
Identities = 6/22 (27%), Positives = 7/22 (31%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
T L LA + LL
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFS 32
Score = 33.1 bits (74), Expect = 0.020
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 20/104 (19%)
Query: 8 GVSALQTAIIKNDVMMVKYLLS----LPSIKVRDG----ALH-AIQCDEINILKLILDWQ 58
G +AL A+I + +LL + +++ ALH A +
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG-----------E 57
Query: 59 KCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ G T L LA ++ +LL+
Sbjct: 58 ASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPR 101
Score = 29.7 bits (65), Expect = 0.32
Identities = 20/88 (22%), Positives = 26/88 (29%), Gaps = 11/88 (12%)
Query: 37 DG--ALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLE 93
DG ALH A+ L +L E+ N T L LAA LG
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLG----FSAGHEYLDLQNDLGQ----TALHLAAILGEAS 59
Query: 94 IVALLLERGHCIPYPHLPTCQCVQVCQN 121
V L G + + +
Sbjct: 60 TVEKLYAAGAGVLVAERGGHTALHLACR 87
Score = 28.9 bits (63), Expect = 0.48
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 57 WQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ + + N + TPL LA + ++ LLL+ G
Sbjct: 170 DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215
Score = 28.5 bits (62), Expect = 0.78
Identities = 6/32 (18%), Positives = 18/32 (56%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSLPSIKVRDG 38
G + L +A+++ + ++ + L + + + DG
Sbjct: 224 GGRTPLGSALLRPNPILARLLRAHGAPEPEDG 255
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans
[TaxId: 6239]}
Length = 277
Score = 34.7 bits (78), Expect = 0.008
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 57 WQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
K KG TP+MLAAQ GR+E+V L+++G
Sbjct: 199 NMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 244
Score = 32.8 bits (73), Expect = 0.029
Identities = 11/63 (17%), Positives = 14/63 (22%), Gaps = 12/63 (19%)
Query: 40 LHAIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLL 99
LH I + I + N D T L A E L+
Sbjct: 6 LHTEAAGSYAITEPIT------------RESVNIIDPRHNRTVLHWIASNSSAEKSEDLI 53
Query: 100 ERG 102
Sbjct: 54 VHE 56
Score = 30.5 bits (67), Expect = 0.16
Identities = 5/20 (25%), Positives = 6/20 (30%)
Query: 81 TPLMLAAQLGRLEIVALLLE 100
T LA IV +
Sbjct: 256 TARQLAQANNHHNIVDIFDR 275
Score = 28.9 bits (63), Expect = 0.50
Identities = 12/146 (8%), Positives = 33/146 (22%), Gaps = 3/146 (2%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHK---PE 64
+ L + + L+ + + D L+L +
Sbjct: 33 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAY 92
Query: 65 SEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNTDN 124
G + + L AA ++ +L + +
Sbjct: 93 LMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH 152
Query: 125 LNSKPQPPSSIINIYRSKRFFSVRWN 150
+ Q S+ + + + +
Sbjct: 153 NEGRDQVASAKLLVEKGAKVDYDGAA 178
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 34.7 bits (78), Expect = 0.008
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 38 GALHAIQCDEINILKLILDWQKCHKPESEFKGHCNSN---DFPKCITPLMLAAQLGRLEI 94
G ++ ++ + L + K + + + TPL AA G+ E
Sbjct: 188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEA 247
Query: 95 VALLLERG 102
+L+E
Sbjct: 248 CRILVENL 255
Score = 34.3 bits (77), Expect = 0.009
Identities = 16/111 (14%), Positives = 29/111 (26%), Gaps = 2/111 (1%)
Query: 81 TPLMLAAQLGRLEIVALLLERGHCI--PYPHLPTCQCVQVCQNTDNLNSKPQPPSSIINI 138
+ A G E V LLERG I T + ++ + IN
Sbjct: 42 AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ 101
Query: 139 YRSKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHF 189
++ + + + L V+ D+ +
Sbjct: 102 PDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAME 152
Score = 25.5 bits (54), Expect = 7.0
Identities = 6/24 (25%), Positives = 7/24 (29%)
Query: 6 FQGVSALQTAIIKNDVMMVKYLLS 29
F + A D V LL
Sbjct: 38 FDDGAVFLAACSSGDTEEVLRLLE 61
Score = 25.1 bits (53), Expect = 9.1
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 5/53 (9%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALHAIQCDEINILKLIL 55
G + L A + L+ + G A D + L+ +
Sbjct: 232 GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQ 284
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 130
Score = 33.1 bits (74), Expect = 0.011
Identities = 5/77 (6%), Positives = 19/77 (24%)
Query: 81 TPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNTDNLNSKPQPPSSIINIYR 140
L+ ++ G ++V ++ P+ + + +N+
Sbjct: 3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62
Query: 141 SKRFFSVRWNIYEVFKC 157
+ +
Sbjct: 63 ADSDGWTPLHCAASCNN 79
Score = 26.6 bits (57), Expect = 1.7
Identities = 5/127 (3%), Positives = 20/127 (15%), Gaps = 31/127 (24%)
Query: 10 SALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEFKG 69
+ L + ++ + +V+ ++ + +
Sbjct: 3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62
Query: 70 HCNSNDFPKCI-------------------------------TPLMLAAQLGRLEIVALL 98
+ P + G + L
Sbjct: 63 ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122
Query: 99 LERGHCI 105
+
Sbjct: 123 YGVQEKM 129
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 221
Score = 33.3 bits (74), Expect = 0.019
Identities = 10/68 (14%), Positives = 15/68 (22%), Gaps = 3/68 (4%)
Query: 38 GALHAIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCI---TPLMLAAQLGRLEI 94
GA Q L L + C ++ +P L I
Sbjct: 134 GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRI 193
Query: 95 VALLLERG 102
L +
Sbjct: 194 QQQLGQLT 201
Score = 27.2 bits (58), Expect = 1.8
Identities = 3/21 (14%), Positives = 8/21 (38%)
Query: 81 TPLMLAAQLGRLEIVALLLER 101
+ L LA + ++ +
Sbjct: 4 SFLHLAIIHEEKALTMEVIRQ 24
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 31.8 bits (70), Expect = 0.026
Identities = 14/87 (16%), Positives = 24/87 (27%)
Query: 81 TPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNTDNLNSKPQPPSSIINIYR 140
L AA GR+E V LLE G P+ + +QV ++
Sbjct: 5 DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA 64
Query: 141 SKRFFSVRWNIYEVFKCSLFVLTFMFW 167
+ + ++
Sbjct: 65 DPATLTRPVHDAAREGFLDTLVVLHRA 91
Score = 31.8 bits (70), Expect = 0.030
Identities = 7/44 (15%), Positives = 11/44 (25%)
Query: 57 WQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLE 100
G P+ LA +LG ++ L
Sbjct: 80 GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 123
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo
sapiens) [TaxId: 9606]}
Length = 156
Score = 31.7 bits (70), Expect = 0.041
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 81 TPLMLAAQLGRLEIVALLLE 100
TPL LA Q G ++V +L
Sbjct: 135 TPLELALQRGAQDLVDILQG 154
Score = 27.9 bits (60), Expect = 0.85
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 81 TPLMLAAQLGRLEIVALLLERGHCIP 106
L AA G ++ V LL R P
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHP 29
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 31.5 bits (70), Expect = 0.062
Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 15/101 (14%)
Query: 7 QGVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALHAIQCDEINILKLILDWQKCH 61
G + L A KN + LL P K A+H + IL + K
Sbjct: 102 NGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS 161
Query: 62 KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
+ +G+ TPL LA R+E LL+ +G
Sbjct: 162 TNIQDTEGN----------TPLHLACDEERVEEAKLLVSQG 192
Score = 25.7 bits (55), Expect = 5.5
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 79 CITPLML--AAQLGRLEIVALLLERGHCIP 106
C++ LM+ A G+LE + + +
Sbjct: 1 CVSNLMVCNLAYSGKLEELKESILADKSLA 30
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 209
Score = 30.9 bits (68), Expect = 0.11
Identities = 10/44 (22%), Positives = 14/44 (31%)
Query: 81 TPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNTDN 124
T L LAA+ R + LL+ G + D
Sbjct: 25 TSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADA 68
Score = 29.4 bits (64), Expect = 0.36
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 81 TPLMLAAQLGRLEIVALL 98
P +A++ +IV LL
Sbjct: 191 LPRDVASERLHHDIVRLL 208
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 229
Score = 30.9 bits (68), Expect = 0.11
Identities = 6/22 (27%), Positives = 6/22 (27%)
Query: 81 TPLMLAAQLGRLEIVALLLERG 102
PL A V LL
Sbjct: 2 YPLHQACMENEFFKVQELLHSK 23
Score = 27.9 bits (60), Expect = 1.1
Identities = 14/130 (10%), Positives = 32/130 (24%), Gaps = 11/130 (8%)
Query: 39 ALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVAL 97
LH A +E ++ +L + + + G PL + EI +
Sbjct: 3 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGR----------IPLHWSVSFQAHEITSF 52
Query: 98 LLERGHCIPYPHLPTCQCVQVCQNTDNLNSKPQPPSSIINIYRSKRFFSVRWNIYEVFKC 157
LL + + P ++ + S + + +
Sbjct: 53 LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA 112
Query: 158 SLFVLTFMFW 167
+
Sbjct: 113 VGKKWFEVSQ 122
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 30.2 bits (66), Expect = 0.21
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 81 TPLMLAAQLGRLEIVALLLE 100
TPL +A G L V L+
Sbjct: 5 TPLHIAVVQGNLPAVHRLVN 24
Score = 29.8 bits (65), Expect = 0.26
Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 4/102 (3%)
Query: 1 MFYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKC 60
+ + G++AL A+ V+ LL + D I+ ++ + +
Sbjct: 103 LEARNYDGLTALHVAVNTECQETVQLLL----ERGADIDAVDIKSGRSPLIHAVENNSLS 158
Query: 61 HKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
G + + L A+ G L +V L+ G
Sbjct: 159 MVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG 200
Score = 28.7 bits (62), Expect = 0.53
Identities = 16/152 (10%), Positives = 37/152 (24%), Gaps = 3/152 (1%)
Query: 8 GVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKL-ILDWQKCHKPESE 66
G + L A+++ ++ V L++L R+ L L L ++
Sbjct: 3 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRE--LDIYNNLRQTPLHLAVITTLPSVVRLLV 60
Query: 67 FKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNTDNLN 126
G T LA + + LL+ +
Sbjct: 61 TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 120
Query: 127 SKPQPPSSIINIYRSKRFFSVRWNIYEVFKCS 158
+ ++ ++ +
Sbjct: 121 ECQETVQLLLERGADIDAVDIKSGRSPLIHAV 152
Score = 26.0 bits (55), Expect = 4.5
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 81 TPLMLAAQLGRLEIV 95
TPLM+A ++I+
Sbjct: 212 TPLMVARSRRVIDIL 226
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.141 0.446
Gapped
Lambda K H
0.267 0.0395 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 967,540
Number of extensions: 43935
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 79
Length of query: 256
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,268,006
Effective search space: 219365038
Effective search space used: 219365038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.7 bits)