BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4453
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QX5|A Chain A, Structure Of Nucleoporin Nic96
pdb|2QX5|B Chain B, Structure Of Nucleoporin Nic96
Length = 661
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 4 VMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRK 61
V + L LI L +D+E + + EL+ TK+FTV L RD + + V++ R+
Sbjct: 374 VAVEYLVLITLNEGPTDVE-LCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQ 430
>pdb|2RFO|A Chain A, Crystral Structure Of The Nucleoporin Nic96
pdb|2RFO|B Chain B, Crystral Structure Of The Nucleoporin Nic96
Length = 651
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 4 VMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRK 61
V + L LI L +D+E + + EL+ TK+FTV L RD + + V++ R+
Sbjct: 364 VAVEYLVLITLNEGPTDVE-LCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQ 420
>pdb|2WJA|A Chain A, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Phosphate.
pdb|2WJA|B Chain B, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Phosphate
Length = 168
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 43 LIDCCRDASEVEIV------LKRRKGTALMKSRFKYPLLMVAMDYRQKEFVAHPNVQQML 96
L+D D S + + LK +GT + + L++ M+Y E ++ +
Sbjct: 64 LVDHAADESAIRVAEKNGLCLKGHRGTKFTSALARQYDLLLVMEYSHLEQISRIAPEARG 123
Query: 97 DCIWIGDWIDWEKYSQPYKF 116
+ G W+D ++ PY+
Sbjct: 124 KTMLFGHWLDSKEIPDPYRM 143
>pdb|2WMY|A Chain A, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|B Chain B, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|C Chain C, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|D Chain D, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|E Chain E, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|F Chain F, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|G Chain G, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|H Chain H, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate
Length = 150
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 43 LIDCCRDASEVEIV------LKRRKGTALMKSRFKYPLLMVAMDYRQKEFVAHPNVQQML 96
L+D D S + + LK +GT + + L++ M+Y E ++ +
Sbjct: 46 LVDHTADESAIRVAEKNGLCLKGHRGTKFTSALARQYDLLLVMEYSHLEQISRIAPEARG 105
Query: 97 DCIWIGDWIDWEKYSQPYKF 116
+ G W+D ++ PY+
Sbjct: 106 KTMLFGHWLDSKEIPDPYRM 125
>pdb|3T4M|A Chain A, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|B Chain B, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|C Chain C, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|D Chain D, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|E Chain E, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|F Chain F, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|G Chain G, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|H Chain H, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|I Chain I, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|J Chain J, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
Length = 230
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 12 ILLRSHTS--DIEWIFGSSYEELLHRTKQFTVDLIDCCRDA-SEVEIVLK---RRKGTAL 65
I L++ T D+ + SS E+L T+ V +CC++ +V +V+K RR G
Sbjct: 163 IDLKTDTDQVDLSSYYASSKYEILSATQTRQVRFYECCKEPYPDVNLVVKFRERRAGNGF 222
Query: 66 MKSRF 70
++ F
Sbjct: 223 FRNLF 227
>pdb|1J5U|A Chain A, Crystal Structure Of An Archease, Possible Chaperone
(Tm1083) From Thermotoga Maritima At 2.0 A Resolution
Length = 136
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 16 SHTSDIEW-IFGSSYEELLHRTKQFTVDLIDCCRDASEVE 54
HT+DI + I G+SYEELL + ++ D E E
Sbjct: 18 EHTADIAYEISGNSYEELLEEARNILLEEEGIVLDTEEKE 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.142 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,143,924
Number of Sequences: 62578
Number of extensions: 180353
Number of successful extensions: 451
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 449
Number of HSP's gapped (non-prelim): 6
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 48 (23.1 bits)