Query psy4453
Match_columns 187
No_of_seqs 111 out of 351
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 17:30:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3609|consensus 100.0 2.9E-49 6.2E-54 364.1 16.3 169 2-175 204-372 (822)
2 KOG3614|consensus 100.0 5E-30 1.1E-34 245.0 14.8 157 3-170 590-813 (1381)
3 TIGR00870 trp transient-recept 99.9 2.2E-21 4.7E-26 182.8 13.9 167 3-171 201-371 (743)
4 PF08344 TRP_2: Transient rece 96.8 0.00082 1.8E-08 44.7 1.8 23 2-26 41-63 (63)
5 PF02901 PFL: Pyruvate formate 77.7 4.2 9.1E-05 38.7 5.1 49 2-53 209-257 (648)
6 PF12459 DUF3687: D-Ala-teicho 64.2 11 0.00023 23.1 3.0 27 144-170 2-29 (42)
7 KOG0510|consensus 60.5 34 0.00075 33.6 7.1 31 73-103 474-504 (929)
8 cd01677 PFL2_DhaB_BssA Pyruvat 58.5 14 0.00029 36.2 4.2 49 2-53 206-254 (781)
9 PRK09983 pflD putative formate 56.5 15 0.00033 35.8 4.2 38 2-39 199-236 (765)
10 PF15183 MRAP: Melanocortin-2 52.4 26 0.00057 24.6 3.7 22 147-168 37-58 (90)
11 TIGR01774 PFL2-3 pyruvate form 51.9 20 0.00044 35.1 4.2 39 2-40 208-246 (786)
12 PF11241 DUF3043: Protein of u 43.5 72 0.0016 25.3 5.4 21 146-166 96-116 (170)
13 COG1460 Uncharacterized protei 42.6 40 0.00087 25.0 3.6 48 13-60 42-92 (114)
14 PF10852 DUF2651: Protein of u 36.8 98 0.0021 21.6 4.6 31 123-153 8-38 (82)
15 PF08518 GIT_SHD: Spa2 homolog 35.2 32 0.00068 19.6 1.6 14 34-47 11-24 (31)
16 COG4327 Predicted membrane pro 33.8 27 0.00058 25.1 1.5 29 142-170 45-73 (101)
17 PF07131 DUF1382: Protein of u 31.1 1.6E+02 0.0034 19.3 5.3 40 3-42 9-54 (61)
18 KOG4349|consensus 30.4 76 0.0016 24.0 3.4 22 130-151 66-87 (143)
19 PF13373 DUF2407_C: DUF2407 C- 27.9 1.3E+02 0.0028 23.0 4.5 27 112-138 88-114 (140)
20 COG3278 CcoN Cbb3-type cytochr 27.5 93 0.002 28.2 4.1 62 84-159 193-256 (482)
21 PF07101 DUF1363: Protein of u 24.5 31 0.00067 25.0 0.5 25 75-99 81-105 (124)
22 PF00611 FCH: Fes/CIP4, and EF 24.2 1.7E+02 0.0037 19.4 4.3 31 7-39 26-56 (91)
23 smart00555 GIT Helical motif i 23.1 65 0.0014 18.1 1.6 14 34-47 11-24 (31)
24 PF06603 UpxZ: UpxZ family of 23.1 3.1E+02 0.0067 20.1 5.7 43 3-47 2-45 (106)
25 KOG2927|consensus 22.4 1.2E+02 0.0027 26.9 3.8 14 124-137 195-208 (372)
26 PF09537 DUF2383: Domain of un 21.7 2.9E+02 0.0064 19.3 5.7 34 14-47 21-54 (111)
27 PF05115 PetL: Cytochrome B6-F 21.6 1.4E+02 0.003 16.9 2.7 14 154-167 2-15 (31)
28 PF14615 Rsa3: Ribosome-assemb 20.7 1.2E+02 0.0025 18.9 2.5 26 24-52 1-26 (47)
29 PRK06231 F0F1 ATP synthase sub 20.6 3.6E+02 0.0077 21.7 6.0 18 150-167 49-66 (205)
30 PF08656 DASH_Dad3: DASH compl 20.2 1.1E+02 0.0024 21.1 2.5 27 18-46 3-29 (78)
No 1
>KOG3609|consensus
Probab=100.00 E-value=2.9e-49 Score=364.12 Aligned_cols=169 Identities=31% Similarity=0.451 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHHcCCCCccccccCCCchhHHHHhhc
Q psy4453 2 VIVMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTALMKSRFKYPLLMVAMDY 81 (187)
Q Consensus 2 ~i~~A~~ls~~L~~la~~e~~~E~~~~y~~La~~~e~fAv~LLd~cr~s~E~~~lL~~~~~~~~~~~~~~~~~L~lAi~~ 81 (187)
.|.|||+||++|++||.+|. ||+++|++|+.||++||+|||||||+++|++.+||+++.+....++.+++||++||+|
T Consensus 204 PiltAf~LS~eL~~La~~E~--Efk~dY~~Ls~qcq~F~v~LLdq~r~s~Ele~iLn~~~~~~~~~~~~sl~RLklAIky 281 (822)
T KOG3609|consen 204 PILTAFALSWDLQQLASDEL--EFKEDYRDLSMQCQRFAVDLLDQARTSDELEMILNNRNNCPERMTRISLPRLKLAIKY 281 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHcCCCCCcccccccccHHHHHHHHH
Confidence 58999999999999999999 9999999999999999999999999999999999998764221235688999999999
Q ss_pred cccceeechhhHHHHHHHHhcccccccccCcchHHHHHHHHHHHhHHHHHHHHHhcccchhhhhcchhHHHhhHHHHHHH
Q psy4453 82 RQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCLQKSSYGRFYSIPVNIMINAMASYCI 161 (187)
Q Consensus 82 ~qK~FVAHp~~Q~~L~~~W~g~~~~~~~~~~~~k~l~~l~~~~~~P~l~l~y~i~p~s~~~~f~~~P~~kF~~~~~Sy~~ 161 (187)
+||+|||||||||+|+++||+ +||+++...|++.+...++++|+++++|+++|+|+.|+++++||+||++|++||++
T Consensus 282 eqK~FVahpNcQq~L~siWy~---g~R~~~~~~K~~~~~~~~~~~P~~~l~yllap~S~~G~~~r~PfmKFi~H~~Sy~~ 358 (822)
T KOG3609|consen 282 EQKEFVAHPNCQQLLKSVWYS---GWRRKGIKPKFDAWRFLRLCFPMPSLVYLLAPMSRKGTTMRKPFMKFIAHITSYLV 358 (822)
T ss_pred hhhheecCccHHHHHHHHHhh---hhhhcchHHHHHHHHHHHHHhHHHHHHHHhCCCCcccchhhchHHHHHHHHHHHHH
Confidence 999999999999999999999 78889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCC
Q psy4453 162 FLFLLWHQSNQDKN 175 (187)
Q Consensus 162 FL~Ll~~~s~~~~~ 175 (187)
||+||+++|..+..
T Consensus 359 FL~LL~l~s~~~~~ 372 (822)
T KOG3609|consen 359 FLILLILASLIGFY 372 (822)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999975443
No 2
>KOG3614|consensus
Probab=99.97 E-value=5e-30 Score=244.96 Aligned_cols=157 Identities=20% Similarity=0.296 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHhhcccch-hhHHHHHHHHHHHHHHHHHHHhhhhcCchHHHH--HHcCCCCccccccCCCchhHHHHh
Q psy4453 3 IVMLNMLSLILLRSHTSDIE-WIFGSSYEELLHRTKQFTVDLIDCCRDASEVEI--VLKRRKGTALMKSRFKYPLLMVAM 79 (187)
Q Consensus 3 i~~A~~ls~~L~~la~~e~~-~E~~~~y~~La~~~e~fAv~LLd~cr~s~E~~~--lL~~~~~~~~~~~~~~~~~L~lAi 79 (187)
++.|+.+|+.+|.||.+++| .|..++.+++|++|++.|++|||+|++++|..+ ||.+.... | ++. +||++|+
T Consensus 590 ~AkALvA~rLykslA~ea~d~~~~s~el~~~s~~f~~lAveLfd~cy~~de~~A~~LLt~el~~-W-~~~---tCL~LAv 664 (1381)
T KOG3614|consen 590 VAKALVASRLYKSLAHEAHDWHEAAKELKTLSDEFEGLAVELFDECYSSDEARALQLLTYELEN-W-GNS---TCLQLAV 664 (1381)
T ss_pred HHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHhh-c-ccc---cHHHHHH
Confidence 68899999999999999988 899999999999999999999999999999876 67776654 7 322 9999999
Q ss_pred hccccceeechhhHHHHHHHHhcccccccccCcchHHHHHHHHHHHhHHHHHHHHHhcc---------------------
Q psy4453 80 DYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCLQK--------------------- 138 (187)
Q Consensus 80 ~~~qK~FVAHp~~Q~~L~~~W~g~~~~~~~~~~~~k~l~~l~~~~~~P~l~l~y~i~p~--------------------- 138 (187)
+++.|+|+||||||.+|+++|||++.. ++++.+|++ .++++|+++++..+.++
T Consensus 665 ~a~~r~FiAH~c~Q~lLt~~W~G~L~~--r~~~~~kvi----la~icpP~Il~l~~kfk~~~e~~~~t~~~~~~~~~~~~ 738 (1381)
T KOG3614|consen 665 EANAREFIAHPCCQMLLTDKWYGNLQA--RNNPIWKVI----LALICPPLILTLLVKFKMSEETPSQTVAELDVDKDPQK 738 (1381)
T ss_pred hcCCCceeccHhHHHHHHHHHhccccc--cCCCcHHHH----HHHHhhHHHHHhhcchhhhhccCcccchhhhccccccc
Confidence 999999999999999999999999965 377788876 44666776666554321
Q ss_pred -------------------------------------------cchhhhhcchhHHHhhHHHHHHHHHHHHHHHh
Q psy4453 139 -------------------------------------------SSYGRFYSIPVNIMINAMASYCIFLFLLWHQS 170 (187)
Q Consensus 139 -------------------------------------------s~~~~f~~~P~~kF~~~~~Sy~~FL~Ll~~~s 170 (187)
.|+..||++|++|||.|++||++||+|+.-.-
T Consensus 739 ~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r~~~~~~r~~~FysAPIvkFw~~~l~yi~FL~lftYvl 813 (1381)
T KOG3614|consen 739 QRASSSYSSISSREEDLEAGPLSTRSKGDQSMVFPRPRPLGKLRRIRAFYSAPIVKFWLNVLSYIAFLLLFTYVL 813 (1381)
T ss_pred cccccccCcccchhcccccccccccccCChhcccCCCCchhHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHh
Confidence 14568999999999999999999999987544
No 3
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.86 E-value=2.2e-21 Score=182.82 Aligned_cols=167 Identities=29% Similarity=0.438 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHHcCCCCccc----cccCCCchhHHHH
Q psy4453 3 IVMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRKGTAL----MKSRFKYPLLMVA 78 (187)
Q Consensus 3 i~~A~~ls~~L~~la~~e~~~E~~~~y~~La~~~e~fAv~LLd~cr~s~E~~~lL~~~~~~~~----~~~~~~~~~L~lA 78 (187)
+.++...++....+|..+. |++.+|.+++.+|.+++++++++|++++|++.++++...... ..+...+.++.++
T Consensus 201 in~~d~~g~T~Lh~A~~~~--~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~ 278 (743)
T TIGR00870 201 ILTADSLGNTLLHLLVMEN--EFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLA 278 (743)
T ss_pred hhhHhhhhhHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHH
Confidence 4567778888899999999 999999999999999999999999999999999987533211 1344456789999
Q ss_pred hhccccceeechhhHHHHHHHHhcccccccccCcchHHHHHHHHHHHhHHHHHHHHHhcccchhhhhcchhHHHhhHHHH
Q psy4453 79 MDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCLQKSSYGRFYSIPVNIMINAMAS 158 (187)
Q Consensus 79 i~~~qK~FVAHp~~Q~~L~~~W~g~~~~~~~~~~~~k~l~~l~~~~~~P~l~l~y~i~p~s~~~~f~~~P~~kF~~~~~S 158 (187)
++++||+|++||+||+.++..|+++.++|++++..++++......+.+|.+..+|.++|.++++++...|++||++|+.|
T Consensus 279 ~~~~~kk~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~p~~~~~~~~~P~~~l~~~kw~pf~kf~~~~~~ 358 (743)
T TIGR00870 279 IKYKQKKFVAWPNGQQLLSLYWLEELDGWRRKQSVLELIVVFVIGLKFPELSDMYLIAPLSRLGQFKWKPFIKFIFHSAS 358 (743)
T ss_pred HHHhcceeeccCcchHhHhhhccccCCcccccccHHHHHHHHHHhhcChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888999888877788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q psy4453 159 YCIFLFLLWHQSN 171 (187)
Q Consensus 159 y~~FL~Ll~~~s~ 171 (187)
|+.||+++++.+.
T Consensus 359 ~~~fl~l~~~~~~ 371 (743)
T TIGR00870 359 YLYFLYLIIFTSV 371 (743)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998774
No 4
>PF08344 TRP_2: Transient receptor ion channel II; InterPro: IPR013555 TRP (transient receptor potential) channels can be described as tetramers formed by subunits with six transmembrane domains and containing cation-selective pores, which in several cases show high calcium permeability. The molecular architecture of TRP channels is reminiscent of voltage-gated channels and comprises six putative transmembrane segments (S1-S6), intracellular N- and C-termini, and a pore-forming reentrant loop between S5 and S6 []. TRP channels represent a superfamily conserved from worms to humans that comprise seven subfamilies []: TRPC (canonical), TRPV (vanilloid), TRPM (melastatin or long TRPs), TRPA (ankyrin), whose only member is the transmembrane protein 1, TRPP(polycystin), TRPML (mucolipin) and TRPN (Nomp-C homologues), which has a single member that can be found in worms, flies, and zebrafish. TRPs are classified essentially according to their primary amino acid sequence rather than selectivity or ligand affinity, due to their heterogenous properties and complex regulation. TRP channels are involved in many physiological functions, ranging from pure sensory functions, such as pheromone signalling, taste transduction, nociception, and temperature sensation, over homeostatic functions, such as Ca2+ and Mg2+ reabsorption and osmoregulation, to many other motile functions, such as muscle contraction and vaso-motor control []. This domain is found in Trp proteins, generally located to the C terminus of the Ankyrin repeats (IPR002110 from INTERPRO).
Probab=96.76 E-value=0.00082 Score=44.74 Aligned_cols=23 Identities=22% Similarity=0.017 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhhcccchhhHH
Q psy4453 2 VIVMLNMLSLILLRSHTSDIEWIFG 26 (187)
Q Consensus 2 ~i~~A~~ls~~L~~la~~e~~~E~~ 26 (187)
.|.+||+||++|+++|..|+ |||
T Consensus 41 Pi~~AF~Ls~eL~~la~~E~--Efk 63 (63)
T PF08344_consen 41 PILTAFELSWELRELARIEK--EFK 63 (63)
T ss_pred HHHHHHHHHHHHHHHHHccc--ccC
Confidence 48899999999999999999 885
No 5
>PF02901 PFL: Pyruvate formate lyase; InterPro: IPR004184 Pyruvate formate-lyase 2.3.1.54 from EC (also known as formate C-acetyltransferase) is an enzyme which converts acetyl-CoA and formate to CoA and pyruvate. Acetyl-CoA + formate = CoA + pyruvate In Escherichia coli, it uses a radical mechanism to reversibly cleave the C1-C2 bond of pyruvate using the Gly 734 radical and two cysteine residues (Cys 418, Cys 419) [].; GO: 0008861 formate C-acetyltransferase activity, 0006006 glucose metabolic process, 0005737 cytoplasm; PDB: 1QHM_A 1MZO_B 3PFL_B 1H18_A 2PFL_A 1CM5_B 1H16_A 1H17_A 1R9E_A 1R8W_A ....
Probab=77.70 E-value=4.2 Score=38.72 Aligned_cols=49 Identities=10% Similarity=0.007 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHhhhhcCchHH
Q psy4453 2 VIVMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEV 53 (187)
Q Consensus 2 ~i~~A~~ls~~L~~la~~e~~~E~~~~y~~La~~~e~fAv~LLd~cr~s~E~ 53 (187)
||.-|-+.+...+++|..|+|++.|+|++++|+.|+..... -+|+-.|.
T Consensus 209 v~~~a~Rya~la~~~A~~e~d~~rk~EL~~iA~~c~~vp~~---pa~tF~EA 257 (648)
T PF02901_consen 209 VIAYAKRYADLAEELAEEETDPERKAELLEIAEICRRVPEN---PARTFREA 257 (648)
T ss_dssp HHHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHCTTS------SHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCcCcCC---CCCCHHHH
Confidence 56677888899999999999999999999999999976433 34555554
No 6
>PF12459 DUF3687: D-Ala-teichoic acid biosynthesis protein; InterPro: IPR021008 Proteins in this family are bacterial proteins of approximately 50 amino acids in length. There are two completely conserved residues (L and Y) that may be functionally important. A number of entries are annotated as D-Ala-teichoic acid biosynthesis protein; however there is no direct evidence to support this annotation.
Probab=64.20 E-value=11 Score=23.06 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=19.7
Q ss_pred hhcchhHHHhhHHHHHHHHHHHHH-HHh
Q psy4453 144 FYSIPVNIMINAMASYCIFLFLLW-HQS 170 (187)
Q Consensus 144 f~~~P~~kF~~~~~Sy~~FL~Ll~-~~s 170 (187)
+...|.++|++.+.-|++=|+.|+ +-+
T Consensus 2 ~~~~~~~~fi~~T~fYf~Ill~L~ylYg 29 (42)
T PF12459_consen 2 IKQKPAVKFIGKTLFYFAILLALIYLYG 29 (42)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999998876554444 444
No 7
>KOG0510|consensus
Probab=60.50 E-value=34 Score=33.61 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=28.0
Q ss_pred hhHHHHhhccccceeechhhHHHHHHHHhcc
Q psy4453 73 PLLMVAMDYRQKEFVAHPNVQQMLDCIWIGD 103 (187)
Q Consensus 73 ~~L~lAi~~~qK~FVAHp~~Q~~L~~~W~g~ 103 (187)
+-+..+++.+|+.-..||.||.+|--.|..-
T Consensus 474 ~~~~~mv~~~~~eLL~HPL~ssfL~mKW~~~ 504 (929)
T KOG0510|consen 474 PILNIMVDKEQIELLEHPLSSSFLFMKWNRY 504 (929)
T ss_pred hHHHHHhhhhHHHHhcChhHHHHHHHHHHHh
Confidence 4688999999999999999999999999753
No 8
>cd01677 PFL2_DhaB_BssA Pyruvate formate lyase 2 and related enzymes. This family includes pyruvate formate lyase 2 (PFL2), B12-independent glycerol dehydratase (DhaB) and the alpha subunit of benzylsuccinate synthase (BssA), all of which have a highly conserved ten-stranded alpha/beta barrel domain, which is similar to those of PFL1 (pyruvate formate lyase 1) and RNR (ribonucleotide reductase). Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. DhaB catalyzes the first step in the conversion of glycerol to 1,3-propanediol while BssA catalyzes the first step in the anaerobic mineralization of both toluene and m-xylene.
Probab=58.54 E-value=14 Score=36.17 Aligned_cols=49 Identities=10% Similarity=-0.017 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHhhhhcCchHH
Q psy4453 2 VIVMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEV 53 (187)
Q Consensus 2 ~i~~A~~ls~~L~~la~~e~~~E~~~~y~~La~~~e~fAv~LLd~cr~s~E~ 53 (187)
||.-|-+.++.-+++|..|.|++.++|++++|+.|+....+ -+++-.|.
T Consensus 206 v~~~a~Rya~la~e~A~~e~d~~rk~EL~~iA~~c~~vp~~---pp~tf~EA 254 (781)
T cd01677 206 VITYAKRYAELAKELAAKETDPKRKAELLEIAEICRRVPAH---PPRTFWEA 254 (781)
T ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHhccCcCC---CCCCHHHH
Confidence 55666677777789998888899999999999999864322 34555554
No 9
>PRK09983 pflD putative formate acetyltransferase 2; Provisional
Probab=56.46 E-value=15 Score=35.75 Aligned_cols=38 Identities=0% Similarity=-0.199 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q psy4453 2 VIVMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQF 39 (187)
Q Consensus 2 ~i~~A~~ls~~L~~la~~e~~~E~~~~y~~La~~~e~f 39 (187)
||.-|-+.+..-+++|..|.|++.|+|++++|+.|+.-
T Consensus 199 v~~~a~Rya~lA~~~a~~e~d~~rk~EL~~iA~~c~~v 236 (765)
T PRK09983 199 SQKHILRYAELAETMAANCTDAQRREELLTIAEISRHN 236 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhccC
Confidence 45666677766678888888889999999999999764
No 10
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=52.45 E-value=26 Score=24.60 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=17.0
Q ss_pred chhHHHhhHHHHHHHHHHHHHH
Q psy4453 147 IPVNIMINAMASYCIFLFLLWH 168 (187)
Q Consensus 147 ~P~~kF~~~~~Sy~~FL~Ll~~ 168 (187)
+=++.||...+.|++||++.++
T Consensus 37 sIVI~FWv~LA~FV~~lF~iL~ 58 (90)
T PF15183_consen 37 SIVIAFWVSLAAFVVFLFLILL 58 (90)
T ss_pred eeehhHHHHHHHHHHHHHHHHH
Confidence 3477899999999988866553
No 11
>TIGR01774 PFL2-3 pyruvate formate-lyase. This model represents isoforms of the pyruvate-formate lyases found in a limited number of species including E. coli. This enzyme catalyzes the reaction pyruvate + CoA - acetyl-CoA + formate, which is a step in the fermentation of glucose.
Probab=51.92 E-value=20 Score=35.05 Aligned_cols=39 Identities=8% Similarity=-0.043 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH
Q psy4453 2 VIVMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQFT 40 (187)
Q Consensus 2 ~i~~A~~ls~~L~~la~~e~~~E~~~~y~~La~~~e~fA 40 (187)
|+.-|-+.+..-+++|..|.|++.++|++++|+.|+.-.
T Consensus 208 ~~~~a~R~a~lA~~~a~~e~d~~Rk~EL~~iA~~c~~vp 246 (786)
T TIGR01774 208 VINHILRYAKLAEEMAASETGESRREELLKIAEICRKVA 246 (786)
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhccCc
Confidence 456677777666888888889999999999999997643
No 12
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=43.47 E-value=72 Score=25.35 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=16.6
Q ss_pred cchhHHHhhHHHHHHHHHHHH
Q psy4453 146 SIPVNIMINAMASYCIFLFLL 166 (187)
Q Consensus 146 ~~P~~kF~~~~~Sy~~FL~Ll 166 (187)
.+|.+..+...+.|++|++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~i 116 (170)
T PF11241_consen 96 PSPQVQLYVTLAMYVLLLLVI 116 (170)
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 568999999999998776544
No 13
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.64 E-value=40 Score=25.01 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=33.4
Q ss_pred HHHhhcccch--hhHHHHHHHHHHHHHHHHHHHhhhh-cCchHHHHHHcCC
Q psy4453 13 LLRSHTSDIE--WIFGSSYEELLHRTKQFTVDLIDCC-RDASEVEIVLKRR 60 (187)
Q Consensus 13 L~~la~~e~~--~E~~~~y~~La~~~e~fAv~LLd~c-r~s~E~~~lL~~~ 60 (187)
+++-|..+++ -|..++..++..--|..|+.++|-| ++.+|++.||...
T Consensus 42 ~~kFakldpe~a~e~veEL~~i~~~~e~~avkIadI~P~t~~ElRsIla~e 92 (114)
T COG1460 42 AEKFAKLDPEKARELVEELLSIVKMSEKIAVKIADIMPRTPDELRSILAKE 92 (114)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhccccHHHHHHHHHhCCCCHHHHHHHHHHc
Confidence 4555666551 2444555555554678999999999 9999999988753
No 14
>PF10852 DUF2651: Protein of unknown function (DUF2651) ; InterPro: IPR020258 This entry contains transmembrane proteins with no known function.
Probab=36.83 E-value=98 Score=21.61 Aligned_cols=31 Identities=19% Similarity=0.548 Sum_probs=22.1
Q ss_pred HHHhHHHHHHHHHhcccchhhhhcchhHHHh
Q psy4453 123 IFLLPWITIVTLCLQKSSYGRFYSIPVNIMI 153 (187)
Q Consensus 123 ~~~~P~l~l~y~i~p~s~~~~f~~~P~~kF~ 153 (187)
.+.+|+++++.-+.-..+.+++|--|++.|.
T Consensus 8 lfi~Plli~i~sI~Gt~l~k~~yimPivtf~ 38 (82)
T PF10852_consen 8 LFILPLLIIIISIIGTYLFKKVYIMPIVTFA 38 (82)
T ss_pred HHHhhHHHHHHHHHHhhhcceeehHHHHHHH
Confidence 4567888887777666666778877877543
No 15
>PF08518 GIT_SHD: Spa2 homology domain (SHD) of GIT; InterPro: IPR013724 GIT proteins are signalling integrators with GTPase-activating function which may be involved in the organisation of the cytoskeletal matrix assembled at active zones (CAZ). The function of the CAZ might be to define sites of neurotransmitter release. Mutations in the Spa2 homology domain (SHD) domain of GIT1 described here interfere with the association of GIT1 with Piccolo, beta-PIX, and focal adhesion kinase [].
Probab=35.23 E-value=32 Score=19.56 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhhh
Q psy4453 34 HRTKQFTVDLIDCC 47 (187)
Q Consensus 34 ~~~e~fAv~LLd~c 47 (187)
.++++++.|++++.
T Consensus 11 ~~F~eL~~DV~~E~ 24 (31)
T PF08518_consen 11 QRFEELATDVYDEL 24 (31)
T ss_pred HHHHHHHHHHHHHH
Confidence 57899999999998
No 16
>COG4327 Predicted membrane protein [Function unknown]
Probab=33.83 E-value=27 Score=25.06 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=24.0
Q ss_pred hhhhcchhHHHhhHHHHHHHHHHHHHHHh
Q psy4453 142 GRFYSIPVNIMINAMASYCIFLFLLWHQS 170 (187)
Q Consensus 142 ~~f~~~P~~kF~~~~~Sy~~FL~Ll~~~s 170 (187)
.+++.-|+-=.+..-+|-+.|.+|+++..
T Consensus 45 ~rifg~pf~ywma~QGsiitfVvlifvya 73 (101)
T COG4327 45 MRIFGWPFGYWMAQQGSIITFVVLIFVYA 73 (101)
T ss_pred cEEeccchhhhhhcCCCeeehHHHHHHHH
Confidence 57888899888888888888888887765
No 17
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=31.08 E-value=1.6e+02 Score=19.35 Aligned_cols=40 Identities=8% Similarity=0.014 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhc------ccchhhHHHHHHHHHHHHHHHHHH
Q psy4453 3 IVMLNMLSLILLRSHT------SDIEWIFGSSYEELLHRTKQFTVD 42 (187)
Q Consensus 3 i~~A~~ls~~L~~la~------~e~~~E~~~~y~~La~~~e~fAv~ 42 (187)
+..|++.++.|.+.+- ++.|.||-.--.+++++.|++|+.
T Consensus 9 LR~~lE~A~~La~~GIRFVpiPv~~dee~~~L~s~~~~kLe~ma~~ 54 (61)
T PF07131_consen 9 LRKALEMAHSLAHIGIRFVPIPVVTDEEFHTLSSQLSQKLERMAAE 54 (61)
T ss_pred HHHHHHHHHHHHHcCceeeccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888775 455668888888888888888765
No 18
>KOG4349|consensus
Probab=30.45 E-value=76 Score=24.02 Aligned_cols=22 Identities=45% Similarity=0.824 Sum_probs=15.8
Q ss_pred HHHHHHhcccchhhhhcchhHH
Q psy4453 130 TIVTLCLQKSSYGRFYSIPVNI 151 (187)
Q Consensus 130 ~l~y~i~p~s~~~~f~~~P~~k 151 (187)
.+.++-..+.|+|+|+..|+.-
T Consensus 66 ilalFTLRkHkygrF~si~ili 87 (143)
T KOG4349|consen 66 ILALFTLRKHKYGRFISIPILI 87 (143)
T ss_pred HHHHHHhhcCccceeeehHHHH
Confidence 3444445678999999999764
No 19
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=27.95 E-value=1.3e+02 Score=22.99 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=21.7
Q ss_pred cchHHHHHHHHHHHhHHHHHHHHHhcc
Q psy4453 112 QPYKFLIILSRIFLLPWITIVTLCLQK 138 (187)
Q Consensus 112 ~~~k~l~~l~~~~~~P~l~l~y~i~p~ 138 (187)
....++..+++++++|++++++++...
T Consensus 88 ~~~dlL~G~liGff~g~~~~~~L~~~~ 114 (140)
T PF13373_consen 88 HNDDLLWGLLIGFFFGLFSLFWLLRED 114 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhcc
Confidence 346778888999999999988876554
No 20
>COG3278 CcoN Cbb3-type cytochrome oxidase, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=27.51 E-value=93 Score=28.25 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=40.9
Q ss_pred cceeechhhHHHHHHHHhcccccccccCcchHHHHHHHHHHHhHHHHHHHHHhccc--chhhhhcchhHHHhhHHHHH
Q psy4453 84 KEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCLQKS--SYGRFYSIPVNIMINAMASY 159 (187)
Q Consensus 84 K~FVAHp~~Q~~L~~~W~g~~~~~~~~~~~~k~l~~l~~~~~~P~l~l~y~i~p~s--~~~~f~~~P~~kF~~~~~Sy 159 (187)
|.+=+-.++|+.+.+.|||.=.- ...+.-.++..+|.+.||. |.-..+|--++-|+.=+.-|
T Consensus 193 kSys~ysGv~DA~vQWWyGHnaV--------------gFflT~gfL~mmYYFvPKqa~rPiySYrLSivhFWalif~Y 256 (482)
T COG3278 193 KSYSAYSGVQDALVQWWYGHNAV--------------GFFLTAGFLGMMYYFVPKQAGRPIYSYRLSIVHFWALIFLY 256 (482)
T ss_pred cceehhcchHHHHHHHHhcccee--------------ehhhhHhHHHHhhhcchhhcCCcceeeeehHHHHHHHHHHH
Confidence 55556669999999999997331 1223346788889999974 33345666666676644433
No 21
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=24.52 E-value=31 Score=25.01 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=19.1
Q ss_pred HHHHhhccccceeechhhHHHHHHH
Q psy4453 75 LMVAMDYRQKEFVAHPNVQQMLDCI 99 (187)
Q Consensus 75 L~lAi~~~qK~FVAHp~~Q~~L~~~ 99 (187)
++=.-.++.|+|+-.|.||.+|+..
T Consensus 81 ikgnsaarrkkflktplc~~ylnnc 105 (124)
T PF07101_consen 81 IKGNSAARRKKFLKTPLCQRYLNNC 105 (124)
T ss_pred ecCchHHHHHhhhcCcchHHHHHHH
Confidence 3333445679999999999999874
No 22
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=24.17 E-value=1.7e+02 Score=19.37 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q psy4453 7 NMLSLILLRSHTSDIEWIFGSSYEELLHRTKQF 39 (187)
Q Consensus 7 ~~ls~~L~~la~~e~~~E~~~~y~~La~~~e~f 39 (187)
=++..-+++-|..|. |+...+..|+.+....
T Consensus 26 ~~l~~~~keRa~lE~--~Yak~L~kl~~~~~~~ 56 (91)
T PF00611_consen 26 EELASFFKERASLEE--EYAKSLQKLAKKFKKK 56 (91)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcc
Confidence 356666777888888 8888888888887753
No 23
>smart00555 GIT Helical motif in the GIT family of ADP-ribosylation factor GTPase-activating proteins. Helical motif in the GIT family of ADP-ribosylation factor GTPase-activating proteins, and in yeast Spa2p and Sph1p (CPP; unpublished results). In p95-APP1 the N-terminal GIT motif might be involved in binding PIX.
Probab=23.13 E-value=65 Score=18.13 Aligned_cols=14 Identities=21% Similarity=0.228 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhhh
Q psy4453 34 HRTKQFTVDLIDCC 47 (187)
Q Consensus 34 ~~~e~fAv~LLd~c 47 (187)
.++.+.+.|++++.
T Consensus 11 ~~F~~L~~Dv~~El 24 (31)
T smart00555 11 EQFQKLLTDLNDEL 24 (31)
T ss_pred HHHHHHHHHHHHHH
Confidence 57888999999887
No 24
>PF06603 UpxZ: UpxZ family of transcription anti-terminator antagonists; InterPro: IPR010570 This family consists of several hypothetical proteins of unknown function and seems to be specific to Bacteroides species.
Probab=23.11 E-value=3.1e+02 Score=20.07 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhhcc-cchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy4453 3 IVMLNMLSLILLRSHTS-DIEWIFGSSYEELLHRTKQFTVDLIDCC 47 (187)
Q Consensus 3 i~~A~~ls~~L~~la~~-e~~~E~~~~y~~La~~~e~fAv~LLd~c 47 (187)
|+.-..++++|--++.. ++ -+.+++..|-+.+-+.+.+|.++=
T Consensus 2 i~~L~~~ah~Ll~lG~dg~p--iYsD~~~rLN~ev~~~~~~Ly~~~ 45 (106)
T PF06603_consen 2 IDSLQSLAHELLYLGMDGSP--IYSDDFSRLNKEVYEQSNDLYSQH 45 (106)
T ss_pred HHHHHHHHHHHHhcCCCCCe--eehHHHHHHhHHHHHHHHHHHhcc
Confidence 45556788888888876 66 899999999999999999999985
No 25
>KOG2927|consensus
Probab=22.37 E-value=1.2e+02 Score=26.92 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=7.6
Q ss_pred HHhHHHHHHHHHhc
Q psy4453 124 FLLPWITIVTLCLQ 137 (187)
Q Consensus 124 ~~~P~l~l~y~i~p 137 (187)
+++|+..+...++|
T Consensus 195 ~~fvl~tlaivLFP 208 (372)
T KOG2927|consen 195 VLFVLVTLAIVLFP 208 (372)
T ss_pred HHHHHHHHHHHhcc
Confidence 44456555555555
No 26
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=21.66 E-value=2.9e+02 Score=19.31 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=20.2
Q ss_pred HHhhcccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy4453 14 LRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCC 47 (187)
Q Consensus 14 ~~la~~e~~~E~~~~y~~La~~~e~fAv~LLd~c 47 (187)
++.+..-+|++.+..+.+++.+.++++.+|-.+.
T Consensus 21 ~~a~~~~~~~~lk~~f~~~~~~~~~~~~~L~~~i 54 (111)
T PF09537_consen 21 EKAAEKAEDPELKSLFQEFAQERQQHAEELQAEI 54 (111)
T ss_dssp HHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334433345777777777777777777665554
No 27
>PF05115 PetL: Cytochrome B6-F complex subunit VI (PetL); InterPro: IPR007802 This family consists of several Cytochrome B6-F complex subunit VI (PetL) proteins found in a number of plant species. PetL is one of the small subunits which make up the cytochrome b(6)f complex. PetL is not absolutely required for either the accumulation or for the function of cytochrome b6f; in its absence, however, the complex becomes unstable in vivo in aging cells and labile in vitro. It has been suggested that the N terminus of the protein is likely to lie in the thylakoid lumen [].; GO: 0009055 electron carrier activity, 0009512 cytochrome b6f complex; PDB: 2ZT9_E 1Q90_L.
Probab=21.59 E-value=1.4e+02 Score=16.95 Aligned_cols=14 Identities=29% Similarity=0.332 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHH
Q psy4453 154 NAMASYCIFLFLLW 167 (187)
Q Consensus 154 ~~~~Sy~~FL~Ll~ 167 (187)
....||+.||...+
T Consensus 2 ~tiisYf~fL~~al 15 (31)
T PF05115_consen 2 LTIISYFGFLLAAL 15 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 35689999986544
No 28
>PF14615 Rsa3: Ribosome-assembly protein 3
Probab=20.72 E-value=1.2e+02 Score=18.85 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCchH
Q psy4453 24 IFGSSYEELLHRTKQFTVDLIDCCRDASE 52 (187)
Q Consensus 24 E~~~~y~~La~~~e~fAv~LLd~cr~s~E 52 (187)
||++.|.+ .-.++|+-| ||+.|....
T Consensus 1 ~f~~~yl~--~~t~efgdD-Ld~lR~~~d 26 (47)
T PF14615_consen 1 EFRNFYLQ--RLTDEFGDD-LDELRKAPD 26 (47)
T ss_pred ChHHHHHH--HHHHHHHHH-HHHHhcCCC
Confidence 46677755 556788888 677775543
No 29
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=20.57 E-value=3.6e+02 Score=21.72 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=15.0
Q ss_pred HHHhhHHHHHHHHHHHHH
Q psy4453 150 NIMINAMASYCIFLFLLW 167 (187)
Q Consensus 150 ~kF~~~~~Sy~~FL~Ll~ 167 (187)
.-|+.++++|++|+++|.
T Consensus 49 ~~~i~qlInFlIlv~lL~ 66 (205)
T PRK06231 49 WVFIAHLIAFSILLLLGI 66 (205)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468899999999998873
No 30
>PF08656 DASH_Dad3: DASH complex subunit Dad3; InterPro: IPR013965 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=20.23 E-value=1.1e+02 Score=21.13 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=21.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhh
Q psy4453 18 TSDIEWIFGSSYEELLHRTKQFTVDLIDC 46 (187)
Q Consensus 18 ~~e~~~E~~~~y~~La~~~e~fAv~LLd~ 46 (187)
..|. |.-++|+.|+++..+++..+=+-
T Consensus 3 pLEq--~VL~eY~~La~~L~~L~~~l~~L 29 (78)
T PF08656_consen 3 PLEQ--EVLDEYQRLADNLKTLSDTLKDL 29 (78)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455 88899999999999988776555
Done!