Query psy4453
Match_columns 187
No_of_seqs 111 out of 351
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 17:30:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4453.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4453hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y8n_A 4-hydroxyphenylacetate 60.0 10 0.00036 36.2 5.1 50 2-54 278-327 (897)
2 1r9d_A Glycerol dehydratase; r 59.9 11 0.00038 35.5 5.2 93 2-102 215-317 (787)
3 2f3o_A PFLD, PFL2, pyruvate fo 51.2 18 0.00063 33.9 5.1 48 2-53 206-253 (776)
4 4etr_A Putative uncharacterize 32.1 1.1E+02 0.0037 22.1 5.9 46 4-49 21-66 (153)
5 2avr_X Adhesion A; antiparalle 24.2 94 0.0032 22.2 4.1 42 13-54 57-98 (119)
6 1q90_L Cytochrome B6F complex 17.3 1.1E+02 0.0038 16.7 2.5 14 154-167 2-15 (32)
7 2r2v_A GCN4 leucine zipper; co 16.7 1.5E+02 0.0052 16.3 3.1 14 29-42 3-16 (34)
8 3etw_A Adhesin A; antiparallel 16.3 1.7E+02 0.006 20.7 4.1 45 9-53 53-97 (119)
9 2kou_A Dicer-like protein 4; A 16.2 81 0.0028 21.6 2.2 18 4-21 69-86 (102)
10 4hw4_A Induced myeloid leukemi 15.8 1.7E+02 0.0057 21.6 4.1 26 8-35 38-64 (157)
No 1
>2y8n_A 4-hydroxyphenylacetate decarboxylase large subuni; lyase, radical chemistry, metalloenzyme, iron-sulfur center; 1.75A {Clostridium scatologenes} PDB: 2yaj_A*
Probab=60.02 E-value=10 Score=36.18 Aligned_cols=50 Identities=8% Similarity=-0.080 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHhhhhcCchHHH
Q psy4453 2 VIVMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVE 54 (187)
Q Consensus 2 ~i~~A~~ls~~L~~la~~e~~~E~~~~y~~La~~~e~fAv~LLd~cr~s~E~~ 54 (187)
||.-|-+.+..-+++|..|.|++.+++++++|+.|+.... .-+++-.|.-
T Consensus 278 vi~~a~RyA~laeelA~~e~d~~rk~EL~~ia~~~~~v~~---~pa~tf~EAl 327 (897)
T 2y8n_A 278 LSAWCENYSKRAKYLASIETDSEIKANYEKIEEVMGNIAH---KKPANFWEAI 327 (897)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHTT---SCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCcccc---CCCCCHHHHH
Confidence 4566667777788899888888999999999999987543 4567777763
No 2
>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium butyricum} SCOP: c.7.1.1 PDB: 1r8w_A 1r9e_A
Probab=59.88 E-value=11 Score=35.47 Aligned_cols=93 Identities=12% Similarity=0.131 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHH------HcCCCCccccccCCCchhH
Q psy4453 2 VIVMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIV------LKRRKGTALMKSRFKYPLL 75 (187)
Q Consensus 2 ~i~~A~~ls~~L~~la~~e~~~E~~~~y~~La~~~e~fAv~LLd~cr~s~E~~~l------L~~~~~~~~~~~~~~~~~L 75 (187)
||.-|-+.+..-+++|..|.|++.++|++++|+.|+... ..-+++-.|.-.. ....+.. +...++.|+
T Consensus 215 vi~~a~Rya~la~elA~~e~d~~rk~EL~~iA~~~~~vp---~~pa~tf~EAlQ~~~f~~l~~~~E~n---g~~~S~GR~ 288 (787)
T 1r9d_A 215 AITYVNRYAKKAKEIADNTSDAKRKAELNEIAKICSKVS---GEGAKSFYEACQLFWFIHAIINIESN---GHSISPARF 288 (787)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHT---TSCCCSHHHHHHHHHHHHHHHHHHCC---CSCBCCBSH
T ss_pred HHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHhcccc---cCCCCCHHHHHHHHHHHHHHhhhccC---CCcccCccH
Confidence 455666777777889988888899999999999998653 3456777776331 1111110 111233444
Q ss_pred HHHhh----ccccceeechhhHHHHHHHHhc
Q psy4453 76 MVAMD----YRQKEFVAHPNVQQMLDCIWIG 102 (187)
Q Consensus 76 ~lAi~----~~qK~FVAHp~~Q~~L~~~W~g 102 (187)
+.=+. .+.+ +...-.|.+|...|.-
T Consensus 289 Dq~L~Pyy~~Dl~--lt~eeA~Eli~~f~iK 317 (787)
T 1r9d_A 289 DQYMYPYYENDKN--ITDKFAQELIDCIWIK 317 (787)
T ss_dssp HHHHHHHHHHCSS--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccc--CCHHHHHHHHHHHHHH
Confidence 44332 2222 7778899999999974
No 3
>2f3o_A PFLD, PFL2, pyruvate formate-lyase 2; glycerol dehydratase, glycyl R hyperthermophilic, unknown function; HET: PGE; 2.90A {Archaeoglobus fulgidus}
Probab=51.21 E-value=18 Score=33.91 Aligned_cols=48 Identities=10% Similarity=-0.097 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHhhhhcCchHH
Q psy4453 2 VIVMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEV 53 (187)
Q Consensus 2 ~i~~A~~ls~~L~~la~~e~~~E~~~~y~~La~~~e~fAv~LLd~cr~s~E~ 53 (187)
||.-|-+.+..-+++|..| |++.++|++++|+.|+... ..-+++-.|.
T Consensus 206 vi~~a~Rya~la~e~A~~e-d~~rk~EL~~ia~~~~~v~---~~pa~tf~EA 253 (776)
T 2f3o_A 206 VINYGLRYSKLAEELAESE-DGERREELLKIAEICRKVP---AEKPETFWEA 253 (776)
T ss_dssp HHHHHHHHHHHHHHHHTTC-CTHHHHHHHHHHHHHHHTT---TSCCCSHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHhCcCc---cCCCCCHHHH
Confidence 4556667777778888888 7899999999999998643 3355666665
No 4
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=32.06 E-value=1.1e+02 Score=22.10 Aligned_cols=46 Identities=4% Similarity=-0.214 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy4453 4 VMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRD 49 (187)
Q Consensus 4 ~~A~~ls~~L~~la~~e~~~E~~~~y~~La~~~e~fAv~LLd~cr~ 49 (187)
......-.-.++.+..-+|++.+..+.+++.++++++.+|=.+.+.
T Consensus 21 ~~~~D~~~gY~~aae~~~d~~lk~~f~~~a~~~~~~~~eL~~~i~~ 66 (153)
T 4etr_A 21 QTSKDGEAGFHACAEDLRDPQLKAAMLEQSRDCAAAADELERIVLE 66 (153)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455666666556799999999999999999888776543
No 5
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=24.24 E-value=94 Score=22.20 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=28.9
Q ss_pred HHHhhcccchhhHHHHHHHHHHHHHHHHHHHhhhhcCchHHH
Q psy4453 13 LLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVE 54 (187)
Q Consensus 13 L~~la~~e~~~E~~~~y~~La~~~e~fAv~LLd~cr~s~E~~ 54 (187)
+.++....+-.=|+++|++|+.+|.+..-+|=.+....+++-
T Consensus 57 ~~~i~~~~~~~~yK~eY~~L~KkYk~~~~~Ld~eI~~qe~iI 98 (119)
T 2avr_X 57 AQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVI 98 (119)
T ss_dssp HHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444332235899999999999999888766666665553
No 6
>1q90_L Cytochrome B6F complex subunit PETL; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.24.1
Probab=17.31 E-value=1.1e+02 Score=16.68 Aligned_cols=14 Identities=21% Similarity=0.166 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHH
Q psy4453 154 NAMASYCIFLFLLW 167 (187)
Q Consensus 154 ~~~~Sy~~FL~Ll~ 167 (187)
....||+.||...+
T Consensus 2 ~tiisYf~fL~~al 15 (32)
T 1q90_L 2 LTITSYVGLLIGAL 15 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 34679999986544
No 7
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=16.75 E-value=1.5e+02 Score=16.30 Aligned_cols=14 Identities=0% Similarity=0.202 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q psy4453 29 YEELLHRTKQFTVD 42 (187)
Q Consensus 29 y~~La~~~e~fAv~ 42 (187)
+++|++++|+.+-.
T Consensus 3 MnQledKvEel~~~ 16 (34)
T 2r2v_A 3 LKQVADKLEEVASK 16 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 44555555555444
No 8
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=16.32 E-value=1.7e+02 Score=20.74 Aligned_cols=45 Identities=20% Similarity=0.166 Sum_probs=32.6
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHhhhhcCchHH
Q psy4453 9 LSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEV 53 (187)
Q Consensus 9 ls~~L~~la~~e~~~E~~~~y~~La~~~e~fAv~LLd~cr~s~E~ 53 (187)
++..+.++...++-.-|+++|.+++.++++.--+|=+.....+++
T Consensus 53 i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~keLd~~ik~qeki 97 (119)
T 3etw_A 53 LSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAV 97 (119)
T ss_dssp HHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666654445789999999999999988877776665554
No 9
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=16.15 E-value=81 Score=21.55 Aligned_cols=18 Identities=6% Similarity=-0.387 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhcccc
Q psy4453 4 VMLNMLSLILLRSHTSDI 21 (187)
Q Consensus 4 ~~A~~ls~~L~~la~~e~ 21 (187)
++||++++.|.+++..+.
T Consensus 69 sAAf~Ac~~L~~~G~Ldd 86 (102)
T 2kou_A 69 DACLKAVHELHNLGVLND 86 (102)
T ss_dssp HHHHHHHHHHHHHCSCTT
T ss_pred HHHHHHHHHHHHCCCCcc
Confidence 689999999999998865
No 10
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=15.80 E-value=1.7e+02 Score=21.55 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=14.4
Q ss_pred HHHHHHHHhhcc-cchhhHHHHHHHHHHH
Q psy4453 8 MLSLILLRSHTS-DIEWIFGSSYEELLHR 35 (187)
Q Consensus 8 ~ls~~L~~la~~-e~~~E~~~~y~~La~~ 35 (187)
+.+..|++++.. |. .+...|+.+.++
T Consensus 38 ~~~~~Lr~vgdele~--~~~~~f~~m~~~ 64 (157)
T 4hw4_A 38 KALETLRRVGDGVQR--NHETAFQGMLRK 64 (157)
T ss_dssp HHHHHHHHHHHHHHH--HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHh
Confidence 445566666664 44 555556555554
Done!