Query psy4453
Match_columns 187
No_of_seqs 111 out of 351
Neff 7.2
Searched_HMMs 13730
Date Fri Aug 16 17:30:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4453.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4453hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r9da_ c.7.1.1 (A:) Glycerol 61.2 4.7 0.00034 35.7 5.2 92 2-101 214-315 (786)
2 d1jt6a2 a.121.1.1 (A:73-187) M 37.6 23 0.0016 23.2 4.5 43 8-52 25-67 (115)
3 d2e74d2 f.23.12.1 (D:12-45) IS 14.4 51 0.0037 16.6 1.9 28 94-136 6-33 (34)
4 d1mb4a1 c.2.1.3 (A:1-132,A:355 12.8 39 0.0029 23.0 1.6 22 73-94 116-140 (147)
5 d2huec1 a.22.1.1 (C:20-101) Hi 11.7 84 0.0061 19.0 2.9 33 13-47 18-50 (82)
6 d1v54e_ a.118.11.1 (E:) Cytoch 11.5 36 0.0026 22.1 1.0 16 2-17 43-58 (105)
7 d1rkta2 a.121.1.1 (A:83-205) H 10.9 1.3E+02 0.0096 19.0 3.9 38 9-48 27-64 (123)
8 d2hyja2 a.121.1.1 (A:83-200) P 8.6 1.7E+02 0.012 17.8 3.7 31 15-47 35-65 (118)
9 d2axtm1 f.23.35.1 (M:1-36) Pho 8.1 82 0.006 16.2 1.4 8 162-169 21-28 (36)
10 d1r4ga_ a.8.5.1 (A:) RNA polym 7.8 75 0.0055 17.7 1.2 19 39-57 23-41 (53)
No 1
>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium butyricum [TaxId: 1492]}
Probab=61.24 E-value=4.7 Score=35.73 Aligned_cols=92 Identities=12% Similarity=0.140 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHH--HcC----CCCccccccCCCchhH
Q psy4453 2 VIVMLNMLSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASEVEIV--LKR----RKGTALMKSRFKYPLL 75 (187)
Q Consensus 2 ~i~~A~~ls~~L~~la~~e~~~E~~~~y~~La~~~e~fAv~LLd~cr~s~E~~~l--L~~----~~~~~~~~~~~~~~~L 75 (187)
|+.-|-+.+...+++|..|.|++.|+|++++|+.|+..... -.++-.|.-.. +.+ .+.. +...++.|+
T Consensus 214 ~~~~a~Rya~~a~e~A~~e~d~~rk~EL~~iA~~~~~vp~~---pp~tf~EAlQ~~wf~~l~~~~e~n---g~~~s~GRl 287 (786)
T d1r9da_ 214 AITYVNRYAKKAKEIADNTSDAKRKAELNEIAKICSKVSGE---GAKSFYEACQLFWFIHAIINIESN---GHSISPARF 287 (786)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTS---CCCSHHHHHHHHHHHHHHHHHHCC---CSCBCCBSH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcccc---CCcCHHHHHHHHHHHHHHHHHhcC---CCCcCCcch
Confidence 45566778888899999999999999999999999976432 44666665331 111 1110 011223344
Q ss_pred HHHhh----ccccceeechhhHHHHHHHHh
Q psy4453 76 MVAMD----YRQKEFVAHPNVQQMLDCIWI 101 (187)
Q Consensus 76 ~lAi~----~~qK~FVAHp~~Q~~L~~~W~ 101 (187)
+.=+. .+. + +...-.|.+|...|.
T Consensus 288 Dq~L~Pyye~D~-~-it~eeA~ELl~~~~i 315 (786)
T d1r9da_ 288 DQYMYPYYENDK-N-ITDKFAQELIDCIWI 315 (786)
T ss_dssp HHHHHHHHHHCS-S-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-C-CCHHHHHHHHHHHHH
Confidence 33221 121 2 667778999999995
No 2
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=37.55 E-value=23 Score=23.17 Aligned_cols=43 Identities=5% Similarity=-0.120 Sum_probs=34.4
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHhhhhcCchH
Q psy4453 8 MLSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCRDASE 52 (187)
Q Consensus 8 ~ls~~L~~la~~e~~~E~~~~y~~La~~~e~fAv~LLd~cr~s~E 52 (187)
++..++...+...+ |..++.+++.+++++.-.+++++.-.+.|
T Consensus 25 ~a~~EF~~~~~~~~--e~~~~i~~lr~~y~~~~~~Ii~eGi~~G~ 67 (115)
T d1jt6a2 25 NAIIEFYTEYYKTN--SINEKMNKLENKYIDAYHVIFKEGNLNGE 67 (115)
T ss_dssp HHHHHHHTTTTTCH--HHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 34457777777777 99999999999999999999998755443
No 3
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=14.42 E-value=51 Score=16.64 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=15.4
Q ss_pred HHHHHHHhcccccccccCcchHHHHHHHHHHHhHHHHHHHHHh
Q psy4453 94 QMLDCIWIGDWIDWEKYSQPYKFLIILSRIFLLPWITIVTLCL 136 (187)
Q Consensus 94 ~~L~~~W~g~~~~~~~~~~~~k~l~~l~~~~~~P~l~l~y~i~ 136 (187)
|.++-+|+|...+ ...+.++|+ +-|++.
T Consensus 6 qfmnlltfgt~tg-------------~alg~lypv--vkyfip 33 (34)
T d2e74d2 6 QFMNLLAFGTVTG-------------VALGALYPL--VKYFIP 33 (34)
T ss_dssp HHHHHHHHHHHHH-------------HHHHHHHHH--HHHHSC
T ss_pred HHHHHHHHhhHHH-------------HHHhhhhhH--HhhcCC
Confidence 4556666665443 335567777 345443
No 4
>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}
Probab=12.78 E-value=39 Score=22.95 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.0
Q ss_pred hhHHHHhhcccccee---echhhHH
Q psy4453 73 PLLMVAMDYRQKEFV---AHPNVQQ 94 (187)
Q Consensus 73 ~~L~lAi~~~qK~FV---AHp~~Q~ 94 (187)
..++.|++.++|.|+ |.|+|-.
T Consensus 116 ~~I~~a~~~~~k~~~~~~~~p~~~~ 140 (147)
T d1mb4a1 116 KQILHGIHHGTKTFVGGAAEPLRRT 140 (147)
T ss_dssp HHHHHHHHTTCCEEEECTHHHHHHH
T ss_pred HHHHHHHHcCCcceeeeccCcCHhH
Confidence 358999999999999 9999944
No 5
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=11.69 E-value=84 Score=18.95 Aligned_cols=33 Identities=30% Similarity=0.235 Sum_probs=22.9
Q ss_pred HHHhhcccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy4453 13 LLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCC 47 (187)
Q Consensus 13 L~~la~~e~~~E~~~~y~~La~~~e~fAv~LLd~c 47 (187)
+.+-+..+. -..+.|.++++..+.|.-++..++
T Consensus 18 iar~~Gv~r--is~d~~~~l~~~l~~~l~~i~~~a 50 (82)
T d2huec1 18 LARRGGVKR--ISGLIYEETRGVLKVFLENVIRDA 50 (82)
T ss_dssp HHHHTTCCE--ECTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCccc--chHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445565 666788888888888888776653
No 6
>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.53 E-value=36 Score=22.11 Aligned_cols=16 Identities=13% Similarity=-0.226 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhh
Q psy4453 2 VIVMLNMLSLILLRSH 17 (187)
Q Consensus 2 ~i~~A~~ls~~L~~la 17 (187)
||.+|+++|+.+...|
T Consensus 43 Ii~aALrAcRRvND~a 58 (105)
T d1v54e_ 43 IIDAALRACRRLNDFA 58 (105)
T ss_dssp HHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhhhHH
Confidence 7899999997776554
No 7
>d1rkta2 a.121.1.1 (A:83-205) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=10.90 E-value=1.3e+02 Score=19.04 Aligned_cols=38 Identities=8% Similarity=-0.141 Sum_probs=26.4
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q psy4453 9 LSLILLRSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCCR 48 (187)
Q Consensus 9 ls~~L~~la~~e~~~E~~~~y~~La~~~e~fAv~LLd~cr 48 (187)
+..|+.-.|..++ |.++...+.-++..+...+++.+-.
T Consensus 27 ~~~E~~~~a~Rdp--eir~~~~~~~~~~~~~l~~~i~~g~ 64 (123)
T d1rkta2 27 VQFEYLVTAWRNE--ERRQYLEKRYDLFVERFSRLLQKGI 64 (123)
T ss_dssp HHHHHHHGGGGCH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666766 8887777777777777777776643
No 8
>d2hyja2 a.121.1.1 (A:83-200) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=8.58 E-value=1.7e+02 Score=17.81 Aligned_cols=31 Identities=6% Similarity=-0.069 Sum_probs=17.8
Q ss_pred HhhcccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy4453 15 RSHTSDIEWIFGSSYEELLHRTKQFTVDLIDCC 47 (187)
Q Consensus 15 ~la~~e~~~E~~~~y~~La~~~e~fAv~LLd~c 47 (187)
+++..++ +.++..++..++.++.-.+.+.+.
T Consensus 35 E~~~~~~--~ir~~l~~~~~~~~~~l~~~l~~a 65 (118)
T d2hyja2 35 EYDGRPG--RVRDAVAEVWSRWREQLRADLTAA 65 (118)
T ss_dssp HHTTSTT--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 666666666666666666666554
No 9
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.13 E-value=82 Score=16.19 Aligned_cols=8 Identities=50% Similarity=0.982 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy4453 162 FLFLLWHQ 169 (187)
Q Consensus 162 FL~Ll~~~ 169 (187)
||++|.++
T Consensus 21 FLliLyvq 28 (36)
T d2axtm1 21 FLIILYVQ 28 (36)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhee
Confidence 33333333
No 10
>d1r4ga_ a.8.5.1 (A:) RNA polymerase alpha subunit {Sendai virus [TaxId: 11191]}
Probab=7.78 E-value=75 Score=17.65 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=14.5
Q ss_pred HHHHHhhhhcCchHHHHHH
Q psy4453 39 FTVDLIDCCRDASEVEIVL 57 (187)
Q Consensus 39 fAv~LLd~cr~s~E~~~lL 57 (187)
--+..|..|++.+|+..++
T Consensus 23 aYi~~L~~Cktd~EV~evM 41 (53)
T d1r4ga_ 23 AYVKSLSKCKTDQEVKAVM 41 (53)
T ss_dssp HHHHHHHTCCSSHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHH
Confidence 3456788999999987754
Done!