RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4453
         (187 letters)



>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39,
           N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}
          Length = 114

 Score = 28.2 bits (63), Expect = 0.30
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 59  RRKGTALMKSRFKYPLLMVAMDYRQKEFVAHPNVQQMLDCIWIGD 103
           +RK +    SRF   L M  + Y       +P +++ +   WI D
Sbjct: 19  KRKSSRDPNSRFPRKLHM-LLTYLAS----NPQLEEEIGLSWISD 58


>d1n5ua1 a.126.1.1 (A:2-196) Serum albumin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 195

 Score = 26.4 bits (58), Expect = 2.1
 Identities = 5/34 (14%), Positives = 9/34 (26%)

Query: 28 SYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRK 61
           +E+ +    + T     C  D S          
Sbjct: 34 PFEDHVKLVNEVTEFAKTCVADESAENCDKSLHT 67


>d1n5ua3 a.126.1.1 (A:389-584) Serum albumin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 196

 Score = 25.3 bits (55), Expect = 4.8
 Identities = 4/25 (16%), Positives = 8/25 (32%)

Query: 28 SYEELLHRTKQFTVDLIDCCRDASE 52
          S   L+  ++        CC+    
Sbjct: 31 STPTLVEVSRNLGKVGSKCCKHPEA 55


>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
           {Human (Homo sapiens), E2 M [TaxId: 9606]}
          Length = 157

 Score = 24.3 bits (52), Expect = 8.0
 Identities = 11/66 (16%), Positives = 20/66 (30%)

Query: 62  GTALMKSRFKYPLLMVAMDYRQKEFVAHPNVQQMLDCIWIGDWIDWEKYSQPYKFLIILS 121
           G  +   +            + +  V HPN+    +        DW+        +  L 
Sbjct: 48  GKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQ 107

Query: 122 RIFLLP 127
            +FL P
Sbjct: 108 YLFLEP 113


>d1kxpd1 a.126.1.1 (D:17-214) Vitamin D binding protein {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 198

 Score = 24.1 bits (52), Expect = 9.9
 Identities = 5/34 (14%), Positives = 14/34 (41%)

Query: 28 SYEELLHRTKQFTVDLIDCCRDASEVEIVLKRRK 61
          ++E++    K+       CC + ++ +    R  
Sbjct: 40 TFEQVSQLVKEVVSLTEACCAEGADPDCYDTRTS 73


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.142    0.457 

Gapped
Lambda     K      H
   0.267   0.0518    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 724,788
Number of extensions: 32135
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 10
Length of query: 187
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 107
Effective length of database: 1,309,196
Effective search space: 140083972
Effective search space used: 140083972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.5 bits)