BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4458
(303 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O00232|PSD12_HUMAN 26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens
GN=PSMD12 PE=1 SV=3
Length = 456
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/305 (65%), Positives = 240/305 (78%), Gaps = 10/305 (3%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+KE GDV EAA+I+QELQVETYGSMEKKE+V ILEQMRLCLA KDYIRTQIISKKINT
Sbjct: 152 IKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINT 211
Query: 61 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
KFF +E + ++LKLKYY LMI+LDQHEGSYL+ CKHYRAI TPCIQ++ + L++
Sbjct: 212 KFFQEE--NTEKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQALKS 269
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
VVLY++LAP+DNEQSDL HR+ DK L EIP YK LL+ FT EL++WS L + Y EL
Sbjct: 270 VVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGMELR 329
Query: 181 K-------TSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEE 233
K T VF STEEG+K +K LK+RVVEHNIR+MAKYYTRIT++RM LL L ++E
Sbjct: 330 KGSLESPATDVFG-STEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDE 388
Query: 234 TEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINK 293
+E FLS++VV+KTI AK+DR AGIINF R KDP +LN+WS LN LM LVN TTHLI K
Sbjct: 389 SEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAK 448
Query: 294 EQMIH 298
E+MIH
Sbjct: 449 EEMIH 453
>sp|Q5RBI3|PSD12_PONAB 26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii
GN=PSMD12 PE=2 SV=3
Length = 456
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/305 (65%), Positives = 240/305 (78%), Gaps = 10/305 (3%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+KE GDV EAA+I+QELQVETYGSMEKKE+V ILEQMRLCLA KDYIRTQIISKKINT
Sbjct: 152 IKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINT 211
Query: 61 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
KFF +E + ++LKLKYY LMI+LDQHEGSYL+ CKHYRAI TPCIQ++ + L++
Sbjct: 212 KFFQEE--NTEKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQALKS 269
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
VVLY++LAP+DNEQSDL HR+ DK L EIP YK LL+ FT EL++WS L + Y EL
Sbjct: 270 VVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGMELR 329
Query: 181 K-------TSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEE 233
K T VF STEEG+K +K LK+RVVEHNIR+MAKYYTRIT++RM LL L ++E
Sbjct: 330 KGSLESPATDVFG-STEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDE 388
Query: 234 TEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINK 293
+E FLS++VV+KTI AK+DR AGIINF R KDP +LN+WS LN LM LVN TTHLI K
Sbjct: 389 SEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAK 448
Query: 294 EQMIH 298
E+MIH
Sbjct: 449 EEMIH 453
>sp|Q9D8W5|PSD12_MOUSE 26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus
GN=Psmd12 PE=1 SV=4
Length = 456
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/305 (65%), Positives = 239/305 (78%), Gaps = 10/305 (3%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+KE GDV EAA+I+QELQVETYGSMEKKE+V ILEQMRLCLA KDYIRTQIISKKINT
Sbjct: 152 IKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINT 211
Query: 61 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
KFF +E + + LKLKYY LMI+LDQHEGSYL+ CKHYRAI TPCIQ++ + L++
Sbjct: 212 KFFQEE--NTENLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESDKWQQALKS 269
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
VVLY++LAP+DNEQSDL HR+ DK L EIP YK LL+ FT EL++WS L + Y EL
Sbjct: 270 VVLYVILAPFDNEQSDLVHRISSDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGVELR 329
Query: 181 K-------TSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEE 233
K T VF+ STEEG+K +K LK RVVEHNIR+MAKYYTRIT++RM LL L ++E
Sbjct: 330 KGSSETPATDVFS-STEEGEKRWKDLKSRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDE 388
Query: 234 TEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINK 293
+E FLS++VV+KTI AK+DR AG+INF R KDP +LN+WS LN LM LVN TTHLI K
Sbjct: 389 SEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAK 448
Query: 294 EQMIH 298
E+MIH
Sbjct: 449 EEMIH 453
>sp|Q2KJ25|PSD12_BOVIN 26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus
GN=PSMD12 PE=2 SV=3
Length = 456
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/305 (65%), Positives = 239/305 (78%), Gaps = 10/305 (3%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+KE GDV EAA+I+QELQVETYGSMEKKE+V ILEQMRLCLA KDYIRTQIISKKINT
Sbjct: 152 IKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINT 211
Query: 61 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
KFF +E + ++LKLKYY LMI+LDQHEGSYL+ CKHYRAI TPCIQ++ + L++
Sbjct: 212 KFFQEE--NTEKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQALKS 269
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
VVLY++LAP+DNEQSDL HR+ DK L EIP YK LL+ FT EL++WS L + Y EL
Sbjct: 270 VVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGMELR 329
Query: 181 K-------TSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEE 233
K T VF TEEG+K +K LK+RVVEHNIR+MAKYYTRIT++RM LL L ++E
Sbjct: 330 KGSLESPATDVFG-YTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDE 388
Query: 234 TEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINK 293
+E FLS++VV+KTI AK+DR AGIINF R KDP +LN+WS LN LM LVN TTHLI K
Sbjct: 389 SEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAK 448
Query: 294 EQMIH 298
E+MIH
Sbjct: 449 EEMIH 453
>sp|Q54UJ0|PSD12_DICDI 26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium
discoideum GN=psmD12 PE=2 SV=1
Length = 447
Score = 261 bits (667), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 131/299 (43%), Positives = 196/299 (65%), Gaps = 6/299 (2%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+KEDEGD+ AA I+Q+LQVETYG+MEK+EK+T ++QMR+C+ KD+IR Q+I K+N
Sbjct: 153 IKEDEGDIASAAKILQDLQVETYGTMEKREKITFFIDQMRICMNNKDFIRAQLIGNKVNR 212
Query: 61 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
K +D+ Q+LK+ Y++ MI H +Y+ + Y +I TP ++ D Q L+
Sbjct: 213 KTL--AEDENQDLKIDYFKQMIRYFSHSANYIEIARCYLSIYDTPSVEKDTPQLLQTLKY 270
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
+ +Y++L+ NEQSDL +RV E K L +I YK LL F ELI+WS +L + EL
Sbjct: 271 ICIYVILSASSNEQSDLLNRVYEFKPLTDIQNYKDLLNQFKTLELIRWSTFFELNKPELD 330
Query: 181 KTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSS 240
+VF TE ++ L+ RV+EHNIRV++ YY +I+ R+ +LL L ++E+E+F+S
Sbjct: 331 SQTVF--KTEPN--AWEDLRKRVIEHNIRVISTYYQKISTARLAELLDLSLDESEKFVSD 386
Query: 241 MVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIHQ 299
+V +KTI AKIDRPAGI F DP ++LN W+ ++ L+ LV T HL+ +E M+H+
Sbjct: 387 LVSNKTIFAKIDRPAGIATFTTTNDPNKVLNAWANNITSLLDLVEKTNHLVQREFMLHK 445
>sp|Q9UTM3|RPN5_SCHPO 26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpn5a PE=1 SV=1
Length = 443
Score = 258 bits (659), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 134/305 (43%), Positives = 193/305 (63%), Gaps = 5/305 (1%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+KE++GD+ A I+ VETYGS + KEKV IL+Q+RL L + DY +KKIN
Sbjct: 140 IKEEQGDIKSAQEILCNEPVETYGSFDLKEKVAFILDQVRLFLLRSDYYMASTYTKKINV 199
Query: 61 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
KFF EK+DVQ LKLKYY I + H+ +YL CK+YRA+ T +Q DP + +L+N
Sbjct: 200 KFF--EKEDVQSLKLKYYEQKIRIGLHDDAYLDVCKYYRAVYDTAVVQEDPEKWKEILEN 257
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
VV + +L PYDNEQ+DL HR+ D LN +PL + L++ F EL++W + ++Y L
Sbjct: 258 VVCFALLTPYDNEQADLLHRINADHKLNSLPLLQQLVKCFIVNELMRWPKIAEIYGSALR 317
Query: 181 KTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSS 240
VF ++ E+G+K + L+ RV+EHNIRV+A YY+RI R+ LL + ETE+FL
Sbjct: 318 SNPVFAENDEKGEKRWSELRKRVIEHNIRVVANYYSRIHCSRLGVLLDMSPSETEQFLCD 377
Query: 241 MVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQM---I 297
++ AKIDRPA +I+F ++++ E LNEW +++ EL+ + LI KE+M I
Sbjct: 378 LIAKHHFYAKIDRPAQVISFKKSQNVQEQLNEWGSNITELLGKLEKVRQLIIKEEMMNSI 437
Query: 298 HQRVA 302
Q VA
Sbjct: 438 QQAVA 442
>sp|Q12250|RPN5_YEAST 26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN5 PE=1 SV=3
Length = 445
Score = 212 bits (540), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/298 (39%), Positives = 195/298 (65%), Gaps = 3/298 (1%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+K++EG + EAA+I+ ELQVETYGSME EK+ ILEQM L + K DY + ++S+KI
Sbjct: 146 IKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILK 205
Query: 61 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
K F + K + LKL+YY L++++ H+ YL ++ + I T I+SD + VL +
Sbjct: 206 KTFKNPK--YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSH 263
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
+V +L+L+PY N Q+DL H++ D L ++ + L++ FT EL++W +++ YE L
Sbjct: 264 IVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323
Query: 181 KTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSS 240
+ + E + ++ L+ RV+EHN+RV+++YY+RITL R+ +LL L +TE ++S
Sbjct: 324 EDDLAF-GGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISD 382
Query: 241 MVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIH 298
+V I AK++RPA I+NF + K+ ++LNEWS +++EL++ + HLI KE+++H
Sbjct: 383 LVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIGHLITKEEIMH 440
>sp|Q9V345|CSN4_DROME COP9 signalosome complex subunit 4 OS=Drosophila melanogaster
GN=CSN4 PE=1 SV=1
Length = 407
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 123/278 (44%), Gaps = 17/278 (6%)
Query: 10 EAANIIQELQVETYGSMEKKE-KVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKD 68
+AA ++ + +ET E K+ L+ RL L D ++ ++ IN +
Sbjct: 129 DAATVLVGIPLETGQKQYSVECKLGTYLKIARLYLEDNDSVQAELF---INRASLLQAET 185
Query: 69 DVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNVVLYLMLA 128
+ +EL++ Y + + ++ + Y + + D +R L+ ++ +LA
Sbjct: 186 NSEELQVLYKVCYARVLDYRRKFIEAAQRYNELSYRKIV--DQGERMTALKKALICTVLA 243
Query: 129 PYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQS 188
++S + + +D+ +P Y G+L+ +I+ S L++ E L + +
Sbjct: 244 SAGQQRSRMLATLFKDERCQHLPAY-GILEKMYLERIIRRSELQEF--EALLQDHQ-KAA 299
Query: 189 TEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 248
T +G +L V EHN+ +K Y IT + + LL +P + E+ S M+ +
Sbjct: 300 TSDGSS---ILDRAVFEHNLLSASKLYNNITFEELGALLDIPAVKAEKIASQMITEGRMN 356
Query: 249 AKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNN 286
ID+ + I++F + E+L +W + L VN+
Sbjct: 357 GHIDQISAIVHF----ENRELLPQWDRQIQSLCYQVNS 390
>sp|Q5R648|CSN4_PONAB COP9 signalosome complex subunit 4 OS=Pongo abelii GN=COPS4 PE=2
SV=1
Length = 406
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 11/174 (6%)
Query: 113 QRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLR 172
+R L++ + +LA ++S + + +D+ ++ Y G+L+ +I+ + L+
Sbjct: 221 ERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQLQ 279
Query: 173 QLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIE 232
+ F + +L V+EHN+ +K Y IT + + LL +P
Sbjct: 280 E------FAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAA 333
Query: 233 ETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNN 286
+ E+ S M+ + ID+ GI++F + E L W + L VNN
Sbjct: 334 KAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSLCFQVNN 383
>sp|O88544|CSN4_MOUSE COP9 signalosome complex subunit 4 OS=Mus musculus GN=Cops4 PE=1
SV=1
Length = 406
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 11/174 (6%)
Query: 113 QRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLR 172
+R L++ + +LA ++S + + +D+ ++ Y G+L+ +I+ + L+
Sbjct: 221 ERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQLQ 279
Query: 173 QLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIE 232
+ F + +L V+EHN+ +K Y IT + + LL +P
Sbjct: 280 E------FAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAA 333
Query: 233 ETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNN 286
+ E+ S M+ + ID+ GI++F + E L W + L VNN
Sbjct: 334 KAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSLCFQVNN 383
>sp|Q68FS2|CSN4_RAT COP9 signalosome complex subunit 4 OS=Rattus norvegicus GN=Cops4
PE=2 SV=1
Length = 406
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 11/174 (6%)
Query: 113 QRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLR 172
+R L++ + +LA ++S + + +D+ ++ Y G+L+ +I+ + L+
Sbjct: 221 ERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQLQ 279
Query: 173 QLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIE 232
+ F + +L V+EHN+ +K Y IT + + LL +P
Sbjct: 280 E------FAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAA 333
Query: 233 ETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNN 286
+ E+ S M+ + ID+ GI++F + E L W + L VNN
Sbjct: 334 KAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSLCFQVNN 383
>sp|Q3SZA0|CSN4_BOVIN COP9 signalosome complex subunit 4 OS=Bos taurus GN=COPS4 PE=2 SV=1
Length = 406
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 11/174 (6%)
Query: 113 QRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLR 172
+R L++ + +LA ++S + + +D+ ++ Y G+L+ +I+ + L+
Sbjct: 221 ERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQLQ 279
Query: 173 QLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIE 232
+ F + +L V+EHN+ +K Y IT + + LL +P
Sbjct: 280 E------FAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAA 333
Query: 233 ETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNN 286
+ E+ S M+ + ID+ GI++F + E L W + L VNN
Sbjct: 334 KAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSLCFQVNN 383
>sp|A7Y521|CSN4_PIG COP9 signalosome complex subunit 4 OS=Sus scrofa GN=COPS4 PE=2 SV=1
Length = 406
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 11/174 (6%)
Query: 113 QRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLR 172
+R L++ + +LA ++S + + +D+ ++ Y G+L+ +I+ + L+
Sbjct: 221 ERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQLQ 279
Query: 173 QLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIE 232
+ F + +L V+EHN+ +K Y IT + + LL +P
Sbjct: 280 E------FAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAA 333
Query: 233 ETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNN 286
+ E+ S M+ + ID+ GI++F + E L W + L VNN
Sbjct: 334 KAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSLCFQVNN 383
>sp|Q4R5E6|CSN4_MACFA COP9 signalosome complex subunit 4 OS=Macaca fascicularis GN=COPS4
PE=2 SV=1
Length = 406
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 11/174 (6%)
Query: 113 QRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLR 172
+R L++ + +LA ++S + + +D+ ++ Y G+L+ +I+ + L+
Sbjct: 221 ERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQLQ 279
Query: 173 QLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIE 232
+ F + +L V+EHN+ +K Y IT + + LL +P
Sbjct: 280 E------FAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAA 333
Query: 233 ETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNN 286
+ E+ S M+ + ID+ GI++F + E L W + L VNN
Sbjct: 334 KAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSLCFQVNN 383
>sp|Q9BT78|CSN4_HUMAN COP9 signalosome complex subunit 4 OS=Homo sapiens GN=COPS4 PE=1
SV=1
Length = 406
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 11/174 (6%)
Query: 113 QRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLR 172
+R L++ + +LA ++S + + +D+ ++ Y G+L+ +I+ + L+
Sbjct: 221 ERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQLQ 279
Query: 173 QLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIE 232
+ F + +L V+EHN+ +K Y IT + + LL +P
Sbjct: 280 E------FAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAA 333
Query: 233 ETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNN 286
+ E+ S M+ + ID+ GI++F + E L W + L VNN
Sbjct: 334 KAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSLCFQVNN 383
>sp|Q6P0H6|CSN4_DANRE COP9 signalosome complex subunit 4 OS=Danio rerio GN=cops4 PE=2
SV=1
Length = 406
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 11/174 (6%)
Query: 113 QRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLR 172
+R L++ + +LA ++S + + +D+ ++ Y G+L+ +I+ + L+
Sbjct: 221 ERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQLQ 279
Query: 173 QLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIE 232
+ F + +L V+EHN+ +K Y IT + + LL +P
Sbjct: 280 E------FAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPPA 333
Query: 233 ETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNN 286
+ E+ S M+ + ID+ GI++F ++P L W + L VNN
Sbjct: 334 KAEKIASQMITEGRMNGFIDQIDGIVHF-ETREP---LPTWDKQIQSLCFQVNN 383
>sp|Q54B82|CSN4_DICDI COP9 signalosome complex subunit 4 OS=Dictyostelium discoideum
GN=csn4 PE=2 SV=1
Length = 393
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 198 MLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257
+L V+EHN+ +K Y IT + LL + E+ E+ S MV + + ID+ +
Sbjct: 295 VLDRAVIEHNLLSASKLYNNITFDELGSLLEIQAEKAEKVASKMVCEERLIGSIDQIERL 354
Query: 258 INFARNKDPGEILNEWSASLNELMKLVNNTTHLINK 293
I F ++ G+ L +W + L +NN I+K
Sbjct: 355 IQF---ENVGDSLTQWDKKIEGLCIHMNNIIESISK 387
>sp|Q9N359|CSN4_CAEEL COP9 signalosome complex subunit 4 OS=Caenorhabditis elegans
GN=csn-4 PE=1 SV=1
Length = 412
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 198 MLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257
+LK + EHNI +++ Y I+ + + LLG+ E E M+ S+ + ID+ GI
Sbjct: 311 ILKGVIQEHNITAISQLYINISFKTLGQLLGVDTEAAESMAGEMISSERLHGYIDQTNGI 370
Query: 258 INFARNKDPGEILNEWSASLNELMKLVNNTTHLI 291
++F + +P + W + + ++ +N + +I
Sbjct: 371 LHF-EDSNPMRV---WDSQILSTLEQINKVSDMI 400
>sp|Q9C467|CSN4_EMENI COP9 signalosome complex subunit 4 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnD PE=1 SV=2
Length = 408
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 108/278 (38%), Gaps = 26/278 (9%)
Query: 31 KVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGS 90
KV L + +RL L + D + +I K + +D ELKL + +
Sbjct: 145 KVKLWIRIVRLYLEEDDTTSAEAFLNRI--KNLPSKIED-HELKLHFRLSQARIQDARRR 201
Query: 91 YLATCKHYRAI-LTTPCIQSDPVQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNE 149
+L + Y A+ L +SD +Q L + +LAP ++S + +D
Sbjct: 202 FLDASQEYFAVSLAAGVDESDRLQ---ALAAAIRCAVLAPAGPQRSRTLATLYKDDRATS 258
Query: 150 IPLYKGLLQWFTNPELIKWSGLRQLYEEEL--FKTSVFNQSTEEGQKCFKMLKHRVVEHN 207
+ + L + F + R L EE+ F + + +L VVEHN
Sbjct: 259 VEEFGILEKMFLD---------RLLTPEEVSAFAQRLAPHQLAQTADGTTVLDKAVVEHN 309
Query: 208 IRVMAKYYTRITLQRMCDLLGLPI-------EETEEFLSSMVVSKTITAKIDRPAGIINF 260
+ +K Y I + +LGL E+ E + + MV ++ ID+ GII F
Sbjct: 310 LVAASKLYENIKTDALGAILGLQASGDLTAGEKAEAYAARMVEQGRLSGSIDQIDGIIYF 369
Query: 261 ARNKDP-GEILNEWSASLNELMKLVNNTTHLINKEQMI 297
N G + +W A + L + V I + ++
Sbjct: 370 ESNTTATGRHIRQWDAGVQGLSEGVERVATNIAEGHLV 407
>sp|Q8L5U0|CSN4_ARATH COP9 signalosome complex subunit 4 OS=Arabidopsis thaliana GN=CSN4
PE=1 SV=2
Length = 397
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 198 MLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257
+L ++EHN+ +K YT I + LL + + E+ ++M+ + ID+ +
Sbjct: 298 VLDRAMIEHNLLSASKLYTNIRFDELGTLLAIDPRKAEKIAANMIGQDRMRGSIDQEEAV 357
Query: 258 INFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQM 296
I+F +D E L +W ++ L + +N+ + K+ M
Sbjct: 358 IHF---EDDVEELQQWDQQISGLCQALNDILDGMAKKGM 393
>sp|P40016|RPN3_YEAST 26S proteasome regulatory subunit RPN3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN3 PE=1 SV=5
Length = 523
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 21/140 (15%)
Query: 154 KGLLQWFTNPELIKWSGLRQL------YEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHN 207
K LL ++ + +K L++ Y++ L K + Q C + L+ V++
Sbjct: 340 KSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTY-------QLCVR-LRSNVIKTG 391
Query: 208 IRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVV-SKTITAKIDRPAGII------NF 260
IR+++ Y +I+L+ +C L L E+T E++ S + I AKI+ G I N
Sbjct: 392 IRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTELLNI 451
Query: 261 ARNKDPGEILNEWSASLNEL 280
++DP ++ +E N+L
Sbjct: 452 YDSEDPQQVFDERIKFANQL 471
>sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 OS=Arabidopsis
thaliana GN=RPN6A PE=1 SV=1
Length = 419
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 46/84 (54%)
Query: 203 VVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 262
++E N+ + + ++R+ + + +L+GLP++ E+ LS M++ K +D+ AG +
Sbjct: 326 LLEQNLCRLIEPFSRVEIAHIAELIGLPLDHVEKKLSQMILDKKFAGTLDQGAGCLIIFE 385
Query: 263 NKDPGEILNEWSASLNELMKLVNN 286
+ I + ++ + K+V++
Sbjct: 386 DPKADAIYSATLETIANMGKVVDS 409
>sp|O42897|RPN3_SCHPO Probable 26S proteasome regulatory subunit rpn3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn3 PE=3 SV=2
Length = 497
Score = 37.7 bits (86), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 199 LKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFL-SSMVVSKTITAKID 252
L+H V++ +R+++ Y+RI+L+ +C LGL EE+ E++ + + I A ID
Sbjct: 361 LRHTVIKTGLRMISLSYSRISLRDVCIKLGLDSEESAEYIVAKGIRDGVIDASID 415
>sp|Q5B3U7|CSN2_EMENI COP9 signalosome complex subunit 2 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnB PE=1 SV=2
Length = 506
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 204 VEHNIRVMA-----KYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG-- 256
V N+R A YTR TL + + + + E ++ LS +++ K + AKID+ +G
Sbjct: 354 VSRNMRTKAILKLIAPYTRFTLSFISKHIKISVTEAQDILSFLILDKKLNAKIDQESGTV 413
Query: 257 IINFARNKDPGEILNEWSASLNELMKLV 284
++ A + + + EW+ SL L ++
Sbjct: 414 VVESASDVERLRSVEEWNESLRTLWQVT 441
>sp|A4R796|EIF3E_MAGO7 Eukaryotic translation initiation factor 3 subunit E OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=INT6 PE=3 SV=1
Length = 446
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 177 EELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEE 236
EE+ +T F S G +H E ++ A RI L+R+ + LGL ++E E+
Sbjct: 338 EEVLRTDFFLMSI--GDSFVDAARHLFFESYCKIHA----RIDLKRLSEQLGLNVDEGEK 391
Query: 237 FLSSMVVSKTITAKIDRPAGII 258
++ +++ + AKID G +
Sbjct: 392 WIVNLIRDTRLDAKIDFQEGTV 413
>sp|Q9V3G7|PSMD6_DROME 26S proteasome non-ATPase regulatory subunit 6 OS=Drosophila
melanogaster GN=Rpn7 PE=2 SV=1
Length = 389
Score = 35.8 bits (81), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 262
Y +TLQ M + G+ +E ++ L+ + + + AK+DR GI+ R
Sbjct: 311 YRSLTLQYMAESFGVTVEYIDQELARFIAAGRLHAKVDRVGGIVETNR 358
>sp|Q55C75|PSMD6_DICDI 26S proteasome non-ATPase regulatory subunit 6 OS=Dictyostelium
discoideum GN=psmD6 PE=1 SV=1
Length = 382
Score = 35.0 bits (79), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 65/153 (42%), Gaps = 19/153 (12%)
Query: 146 LLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKH-RVV 204
++N+ P + LLQ F N + + G + + + +G + + +H R
Sbjct: 242 VINDTPKLQDLLQSFYNGDYANFFGALAHFSDSI-----------KGDRY--LAEHSRFF 288
Query: 205 EHNIRVMA-----KYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIIN 259
+R++A + Y+ + L+ M + G+ + + LS V + + KID+ +G+I
Sbjct: 289 TREMRILAYNQFLESYSSVKLESMSNQFGVSYDFIDRELSRFVAAGRLNCKIDKVSGVIE 348
Query: 260 FARNKDPGEILNEWSASLNELMKLVNNTTHLIN 292
R+ + + L+ V + +IN
Sbjct: 349 TTRSDAKNHLYKTTLQQGDNLLNRVQKLSRVIN 381
>sp|Q7S0P8|CSN4_NEUCR COP9 signalosome complex subunit 4 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-4 PE=1 SV=1
Length = 440
Score = 34.7 bits (78), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 10/194 (5%)
Query: 68 DDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNVVLYLML 127
DD L L + + +LA + Y I +P I + +R L + +L
Sbjct: 197 DDNPVLNLHFKLSAARIQDSNRQFLAASQSYYEISLSPAIAEE--ERLHTLSMAIKCAVL 254
Query: 128 APYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQ 187
AP +S + R+ +D+ + + L + F + L + E E F +
Sbjct: 255 APAGPPRSRVLARLYKDERSASLEEFGILEKMFLDRLLAR-------AEVEKFAQGLAPH 307
Query: 188 STEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGL-PIEETEEFLSSMVVSKT 246
+L +VEHN+ +++ Y I + LGL + EE + M+
Sbjct: 308 QLATTSDGSTVLAKAMVEHNLLAVSRLYRNIGFDALGSWLGLDSGNKAEEITARMIEQGR 367
Query: 247 ITAKIDRPAGIINF 260
+ ID+ II F
Sbjct: 368 LAGSIDQIDRIIYF 381
>sp|Q9T014|SPA2_ARATH Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2
Length = 1036
Score = 34.7 bits (78), Expect = 0.97, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 121 VVLYLMLAPYDNEQ------SDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQL 174
++LY +L+ + E+ SD+ HR+L K L+E P G W +PE R +
Sbjct: 485 ILLYELLSQFQCERAREAAMSDIRHRILPPKFLSENPKEAGFCLWLLHPESSCRPSTRDI 544
Query: 175 YEEEL 179
+ E+
Sbjct: 545 LQSEV 549
>sp|Q9LQR8|PSD32_ARATH Probable 26S proteasome non-ATPase regulatory subunit 3b
OS=Arabidopsis thaliana GN=At1g75990 PE=2 SV=2
Length = 487
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 199 LKHRVVEHNIRVMAKYYTRITLQRMCDLLGL----PIEETEEFLSSMVVSKTITAKIDRP 254
L+H V+ +R ++ Y+RI+LQ + L L P+ + E ++ + I A ID
Sbjct: 350 LRHNVIRTGLRNISISYSRISLQDVAQKLRLNSANPVADAESIVAKAIRDGAIDATIDHK 409
Query: 255 AGIINFARNKDPGEIL--NEWSASLNELMKLVNN 286
G + +K+ G+I NE + N + N
Sbjct: 410 NGCM---VSKETGDIYSTNEPQTAFNSRIAFCLN 440
>sp|P25161|PSMD3_DROME Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Drosophila melanogaster GN=Rpn3 PE=2 SV=1
Length = 494
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 199 LKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGII 258
L+H V++ IR + Y+RI+ Q + L L E EF+ S + + PA
Sbjct: 359 LRHNVIKTAIRSIGLSYSRISPQDIAKRLMLDSAEDAEFIVSKAIRDGVIEATLDPAQ-- 416
Query: 259 NFARNKDPGEI 269
NF R+K+ +I
Sbjct: 417 NFMRSKESTDI 427
>sp|Q54E53|CSN3_DICDI COP9 signalosome complex subunit 3 OS=Dictyostelium discoideum
GN=csn3 PE=1 SV=1
Length = 418
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/214 (16%), Positives = 89/214 (41%), Gaps = 16/214 (7%)
Query: 91 YLATCKHYRAILTTPCIQSDPVQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEI 150
Y + ++ ++T P + A + +++YL+ T V++ + +
Sbjct: 190 YKKAIEAFKFVITAPASALSAITVEAYKKYLIVYLIQFGSVQHFPKCTPAVVQRNIKSHC 249
Query: 151 PLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRV 210
Y +Q F+N + + + F + + G K+ NI+
Sbjct: 250 KPYTEFVQSFSN------GNINDIMNKASSGAEFFQKDSNWG--LVKLSIKSTYRRNIKK 301
Query: 211 MAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEIL 270
+ + + +++ + + + LP + E+F+ M+ I A I++ G++ F E
Sbjct: 302 LTQTFMTLSINDIAEKVSLPKAKAEQFVLKMIEEGEIFATINQKDGMVTF------DECF 355
Query: 271 NEWSAS--LNELMKLVNNTTHLINKEQMIHQRVA 302
++S LN+L + +NN L +K + + ++++
Sbjct: 356 EDFSGPTILNDLDRNINNIVGLESKIKEMDEKIS 389
>sp|O61470|PSMD3_ANOGA Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Anopheles gambiae GN=Dox-A2 PE=3 SV=2
Length = 496
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 141 VLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKM-- 198
+ E K+ + L + L +F + ++ L++ E + F Q F +
Sbjct: 305 IPERKVFRQAALRRSLGPYFQLTQAVRMGNLQRFGEVLVNFGEQFRQD-----HTFTLII 359
Query: 199 -LKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVV-SKTITAKIDRPAG 256
L+H V++ IR + Y+RI+ Q + LGL E EF+ + + I A +D G
Sbjct: 360 RLRHNVIKTAIRSIGLAYSRISPQDIARKLGLDSPEDAEFIVAKAIRDGVIEATLDPEKG 419
Query: 257 IINFARNKDPGEI 269
+ R+K+ +I
Sbjct: 420 ---YMRSKESTDI 429
>sp|P0CN46|EIF3C_CRYNJ Eukaryotic translation initiation factor 3 subunit C
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=NIP1 PE=3 SV=1
Length = 885
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 198 MLKHRVVEHNIRV----MAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDR 253
+L ++ E +R A YY ++L + LP+ +S M+ + + A +D+
Sbjct: 726 ILAKKIQEEGLRTSLFTYAAYYDSLSLSHLASTFNLPVGRITSIISRMIYTDELAASLDQ 785
Query: 254 PAGIINFAR 262
G++ F R
Sbjct: 786 IDGVVIFHR 794
>sp|P0CN47|EIF3C_CRYNB Eukaryotic translation initiation factor 3 subunit C
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=NIP1 PE=3 SV=1
Length = 885
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 198 MLKHRVVEHNIRV----MAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDR 253
+L ++ E +R A YY ++L + LP+ +S M+ + + A +D+
Sbjct: 726 ILAKKIQEEGLRTSLFTYAAYYDSLSLSHLASTFNLPVGRITSIISRMIYTDELAASLDQ 785
Query: 254 PAGIINFAR 262
G++ F R
Sbjct: 786 IDGVVIFHR 794
>sp|B4HMY3|EIF3C_DROSE Eukaryotic translation initiation factor 3 subunit C OS=Drosophila
sechellia GN=eIF3-S8 PE=3 SV=1
Length = 910
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 191 EGQKCFKMLKHRVVEHNIRVM----AKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKT 246
E + +ML + E ++R + YT I++ + + LP+ + +S M++++
Sbjct: 737 ESDRVREMLTKFIKEESLRTYLFTYSNVYTSISIPSLAQMYELPVPKVHSIISKMIINEE 796
Query: 247 ITAKIDRPAGIINFARNKDPGEILNEWSASLNEL-MKLVNNTTHLIN 292
+ A +D P+ + R++ + L L M+ V+ T+L++
Sbjct: 797 LMASLDDPSETVGMHRSE---------PSRLQALAMQFVDKVTNLVD 834
>sp|A1ZAX1|EIF3C_DROME Eukaryotic translation initiation factor 3 subunit C OS=Drosophila
melanogaster GN=eIF3-S8 PE=1 SV=1
Length = 910
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 191 EGQKCFKMLKHRVVEHNIRVM----AKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKT 246
E + +ML + E ++R + YT I++ + + LP+ + +S M++++
Sbjct: 737 ESDRVREMLTKFIKEESLRTYLFTYSNVYTSISIPSLAQMYELPVPKVHSIISKMIINEE 796
Query: 247 ITAKIDRPAGIINFARNKDPGEILNEWSASLNEL-MKLVNNTTHLIN 292
+ A +D P+ + R++ + L L M+ V+ T+L++
Sbjct: 797 LMASLDDPSETVGMHRSE---------PSRLQALAMQFVDKVTNLVD 834
>sp|Q06364|PSMD3_DAUCA Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Daucus
carota GN=21D7 PE=1 SV=2
Length = 489
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 32/162 (19%)
Query: 146 LLNEIP---------LYKGLLQWFTNPELIKWSGLRQLYEEELFK------TSVFNQSTE 190
LL EIP + K L +F ++ L ELF+ S F + +
Sbjct: 292 LLGEIPERTVFMQKGMEKALRPYFXLTNAVRIGDL------ELFRXVADKFASTF--TAD 343
Query: 191 EGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGL----PIEETEEFLSSMVVSKT 246
L+H V+ +R ++ Y+RI+L + L L P+ + E +S +
Sbjct: 344 RTHNLIVRLRHNVIRTGLRNISISYSRISLVDVARKLRLDSPNPVADAESIVSKAIRDGA 403
Query: 247 ITAKIDRPAGIINFARNKDPGEIL--NEWSASLNELMKLVNN 286
I A ID G + +K+ G+I NE A+ N + N
Sbjct: 404 IDATIDHANG---WMVSKETGDIYSTNEPQAAFNSRIAFCLN 442
>sp|A7TML4|EIF3C_VANPO Eukaryotic translation initiation factor 3 subunit C
OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
70294) GN=NIP1 PE=3 SV=1
Length = 809
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 213 KYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNE 272
++Y++++++++ DL LP ++ E L +++ I A + +++ A+ + + L E
Sbjct: 728 RFYSKLSMKKLSDLFNLPEDKIVESLQAVITEYEIDASFNEDKSVLSIAKGAEITK-LEE 786
Query: 273 WSASLNELMKLVNNTTH 289
++ LN+ +K+ H
Sbjct: 787 VASKLNKEVKITKERLH 803
>sp|Q9U5Z8|PSMD3_ANOST Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Anopheles stephensi GN=DOXA2 PE=3 SV=1
Length = 500
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 199 LKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVV-SKTITAKIDRPAGI 257
L+H V++ IR + Y+RI+ Q + LGL E EF+ + + I A +D G
Sbjct: 365 LRHNVIKTAIRSIGLAYSRISPQDIARKLGLDSPEDAEFIVAKAIRDGVIDATLDPEKG- 423
Query: 258 INFARNKDPGEI 269
+ R K+ +I
Sbjct: 424 --YMRTKESTDI 433
>sp|B4MRZ8|EIF3C_DROWI Eukaryotic translation initiation factor 3 subunit C OS=Drosophila
willistoni GN=eIF3-S8 PE=3 SV=1
Length = 919
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 52/107 (48%), Gaps = 14/107 (13%)
Query: 191 EGQKCFKMLKHRVVEHNIRVM----AKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKT 246
E + ML + E ++R + YT I++ + ++ LP+++ +S M++++
Sbjct: 738 ESDRVRDMLVKFIKEESLRTYLFTYSNVYTSISIPSLAEMYELPVQKVHSIISKMIINEE 797
Query: 247 ITAKIDRPAGIINFARNKDPGEILNEWSASLNEL-MKLVNNTTHLIN 292
+ A +D P+ + R++ + L L M+ V+ T+L++
Sbjct: 798 LMASLDDPSETVVMHRSE---------PSRLQALAMQFVDKVTNLVD 835
>sp|Q0ZB76|EIF3C_BOMMO Eukaryotic translation initiation factor 3 subunit C OS=Bombyx mori
GN=eIF3-S8 PE=2 SV=1
Length = 876
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 198 MLKHRVVEHNIRVM----AKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDR 253
ML + E ++R A Y ++L+ + D+ LP + +S M++++ + A +D
Sbjct: 737 MLGRLIREESLRTYLFTYAHVYASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLDD 796
Query: 254 PAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIHQRVAA 303
P+ R+ +P + +++ LV++ + K+ QR A
Sbjct: 797 PSECAILHRS-EPTRMQALALQLADKVGNLVDSNERIFEKQGSFFQRGGA 845
>sp|Q6IQT4|CSN2_DANRE COP9 signalosome complex subunit 2 OS=Danio rerio GN=cops2 PE=2
SV=1
Length = 443
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 207 NIRV-----MAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 261
NIR + K YTRI + + L + + + E L ++ TI +ID+ ++
Sbjct: 353 NIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTINGRIDQVNQLLELD 412
Query: 262 RNKDPGE---ILNEWSASLNELMKLV 284
K G L++W+ LN L + +
Sbjct: 413 HQKRGGARYTALDKWTNQLNSLNQAI 438
>sp|Q6IR75|CSN2_XENLA COP9 signalosome complex subunit 2 (Fragment) OS=Xenopus laevis
GN=csn2 PE=2 SV=1
Length = 441
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 207 NIRV-----MAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 261
NIR + K YTRI + + L + + + E L ++ TI +ID+ ++
Sbjct: 351 NIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELD 410
Query: 262 RNKDPGE---ILNEWSASLNELMKLV 284
K G L++W+ LN L + V
Sbjct: 411 HQKRGGARYTALDKWTNQLNSLNQAV 436
>sp|B3MIF1|EIF3C_DROAN Eukaryotic translation initiation factor 3 subunit C OS=Drosophila
ananassae GN=eIF3-S8 PE=3 SV=1
Length = 906
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 191 EGQKCFKMLKHRVVEHNIRVM----AKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKT 246
E + +ML + E ++R + YT I++ + + LP+++ +S M++++
Sbjct: 739 ESDRVREMLTKFIKEESLRTYLFTYSNVYTSISIPSLAQMYELPVQKVHSIISKMIINEE 798
Query: 247 ITAKIDRPAGIINFARNKDPGEILNEWSASLNEL-MKLVNNTTHLIN 292
+ A +D P + R++ + L L M+ V+ T+L++
Sbjct: 799 LMASLDDPTETVVMHRSE---------PSRLQALAMQFVDKVTNLVD 836
>sp|P61203|CSN2_RAT COP9 signalosome complex subunit 2 OS=Rattus norvegicus GN=Cops2
PE=2 SV=1
Length = 443
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 207 NIRV-----MAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 261
NIR + K YTRI + + L + + + E L ++ TI +ID+ ++
Sbjct: 353 NIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELD 412
Query: 262 RNKDPGE---ILNEWSASLNELMKLV 284
K G L++W+ LN L + V
Sbjct: 413 HQKRGGARYTALDKWTNQLNSLNQAV 438
>sp|P61202|CSN2_MOUSE COP9 signalosome complex subunit 2 OS=Mus musculus GN=Cops2 PE=1
SV=1
Length = 443
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 207 NIRV-----MAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 261
NIR + K YTRI + + L + + + E L ++ TI +ID+ ++
Sbjct: 353 NIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELD 412
Query: 262 RNKDPGE---ILNEWSASLNELMKLV 284
K G L++W+ LN L + V
Sbjct: 413 HQKRGGARYTALDKWTNQLNSLNQAV 438
>sp|P61201|CSN2_HUMAN COP9 signalosome complex subunit 2 OS=Homo sapiens GN=COPS2 PE=1
SV=1
Length = 443
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 207 NIRV-----MAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 261
NIR + K YTRI + + L + + + E L ++ TI +ID+ ++
Sbjct: 353 NIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELD 412
Query: 262 RNKDPGE---ILNEWSASLNELMKLV 284
K G L++W+ LN L + V
Sbjct: 413 HQKRGGARYTALDKWTNQLNSLNQAV 438
>sp|B4P562|EIF3C_DROYA Eukaryotic translation initiation factor 3 subunit C OS=Drosophila
yakuba GN=eIF3-S8 PE=3 SV=1
Length = 910
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 191 EGQKCFKMLKHRVVEHNIRVM----AKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKT 246
E + +ML + E ++R + YT I++ + + LP+ + +S M++++
Sbjct: 737 ESDRVREMLTKFIKEESLRTYLFTYSNVYTSISIPSLAQMYELPVPKVHSIISKMIINEE 796
Query: 247 ITAKIDRPAGIINFARNKDPGEILNEWSASLNEL-MKLVNNTTHLIN 292
+ A +D P+ + R++ + L L M+ V+ T+L++
Sbjct: 797 LMASLDDPSETVVMHRSE---------PSRLQALAMQFVDKVTNLVD 834
>sp|B3NML0|EIF3C_DROER Eukaryotic translation initiation factor 3 subunit C OS=Drosophila
erecta GN=eIF3-S8 PE=3 SV=1
Length = 910
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 191 EGQKCFKMLKHRVVEHNIRVM----AKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKT 246
E + +ML + E ++R + YT I++ + + LP+ + +S M++++
Sbjct: 737 ESDRVREMLTKFIKEESLRTYLFTYSNVYTSISIPSLAQMYELPVPKVHSIISKMIINEE 796
Query: 247 ITAKIDRPAGIINFARNKDPGEILNEWSASLNEL-MKLVNNTTHLIN 292
+ A +D P+ + R++ + L L M+ V+ T+L++
Sbjct: 797 LMASLDDPSETVVMHRSE---------PSRLQALAMQFVDKVTNLVD 834
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,592,672
Number of Sequences: 539616
Number of extensions: 4409021
Number of successful extensions: 12621
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 12531
Number of HSP's gapped (non-prelim): 129
length of query: 303
length of database: 191,569,459
effective HSP length: 117
effective length of query: 186
effective length of database: 128,434,387
effective search space: 23888795982
effective search space used: 23888795982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)