Query psy4458
Match_columns 303
No_of_seqs 143 out of 669
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 17:35:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4458.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4458hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_P 26S proteasome regulato 100.0 1.2E-65 4.3E-70 496.6 18.2 299 1-302 146-444 (445)
2 4b4t_R RPN7, 26S proteasome re 100.0 9.6E-41 3.3E-45 321.2 13.3 273 3-292 142-422 (429)
3 3txn_A 26S proteasome regulato 100.0 1.4E-32 4.7E-37 260.3 21.9 274 3-286 110-392 (394)
4 4b4t_Q 26S proteasome regulato 100.0 1.8E-32 6E-37 258.2 14.5 285 2-298 145-434 (434)
5 4b4t_O 26S proteasome regulato 99.9 5.2E-24 1.8E-28 202.4 17.7 277 4-291 88-391 (393)
6 4b4t_S RPN3, 26S proteasome re 99.9 4.6E-21 1.6E-25 185.4 16.2 244 30-289 229-477 (523)
7 1ufm_A COP9 complex subunit 4; 99.8 4.1E-22 1.4E-26 148.3 4.4 73 193-265 6-78 (84)
8 3t5x_A PCI domain-containing p 99.5 9.8E-14 3.3E-18 120.0 15.2 172 72-264 11-194 (203)
9 3t5v_B Nuclear mRNA export pro 99.5 3E-12 1E-16 123.0 19.3 246 6-263 140-429 (455)
10 3chm_A COP9 signalosome comple 98.5 1.5E-06 5.2E-11 72.5 13.0 131 118-265 26-159 (169)
11 4b0z_A RPN12, 26S proteasome r 98.3 8.9E-05 3E-09 64.8 19.6 203 36-262 11-228 (229)
12 4ga2_A E3 SUMO-protein ligase 95.7 0.25 8.5E-06 38.7 13.0 89 1-104 6-94 (150)
13 3ro3_A PINS homolog, G-protein 95.7 0.11 3.7E-06 39.5 10.3 96 5-103 22-117 (164)
14 3ulq_A Response regulator aspa 95.3 0.66 2.3E-05 41.7 15.9 100 4-105 115-214 (383)
15 3ro3_A PINS homolog, G-protein 95.2 0.14 4.7E-06 38.8 9.7 97 4-103 61-157 (164)
16 3q15_A PSP28, response regulat 95.1 0.69 2.4E-05 41.6 15.4 100 4-105 113-212 (378)
17 1elr_A TPR2A-domain of HOP; HO 94.9 0.25 8.4E-06 36.1 9.9 93 4-104 16-108 (131)
18 3uq3_A Heat shock protein STI1 94.8 1.2 4E-05 36.6 15.0 92 4-104 17-108 (258)
19 3gw4_A Uncharacterized protein 94.5 0.52 1.8E-05 37.6 11.6 96 5-103 39-135 (203)
20 1wi9_A Protein C20ORF116 homol 94.2 0.16 5.6E-06 35.5 6.6 51 212-262 16-66 (72)
21 1qqe_A Vesicular transport pro 94.1 1.3 4.6E-05 38.4 14.4 169 5-177 90-265 (292)
22 4gcn_A Protein STI-1; structur 93.9 0.8 2.7E-05 34.6 11.1 92 4-104 20-112 (127)
23 3sf4_A G-protein-signaling mod 93.7 0.43 1.5E-05 42.4 10.5 97 5-104 200-296 (406)
24 4b4t_T 26S proteasome regulato 93.5 1 3.5E-05 39.8 12.4 59 197-263 179-238 (274)
25 2qfc_A PLCR protein; TPR, HTH, 93.5 0.59 2E-05 40.6 10.8 98 4-103 127-224 (293)
26 3u3w_A Transcriptional activat 93.4 0.66 2.2E-05 40.3 10.9 96 5-103 88-183 (293)
27 4b4t_Q 26S proteasome regulato 93.3 0.25 8.7E-06 44.9 8.4 71 31-104 134-204 (434)
28 3ro2_A PINS homolog, G-protein 93.2 0.41 1.4E-05 40.9 9.1 97 5-104 196-292 (338)
29 3ro2_A PINS homolog, G-protein 93.1 0.51 1.7E-05 40.3 9.6 123 6-131 157-280 (338)
30 3vtx_A MAMA; tetratricopeptide 92.9 1.6 5.4E-05 34.4 11.8 138 29-184 2-139 (184)
31 1qqe_A Vesicular transport pro 92.9 2.4 8.1E-05 36.8 13.9 96 5-104 50-147 (292)
32 3vtx_A MAMA; tetratricopeptide 92.9 2.7 9.3E-05 32.9 14.0 156 3-183 16-172 (184)
33 3gw4_A Uncharacterized protein 92.8 1.6 5.5E-05 34.6 11.8 89 4-104 4-95 (203)
34 3u3w_A Transcriptional activat 92.5 0.94 3.2E-05 39.3 10.7 98 4-103 127-224 (293)
35 3sf4_A G-protein-signaling mod 92.5 0.83 2.8E-05 40.5 10.4 102 27-131 182-284 (406)
36 4a1s_A PINS, partner of inscut 92.4 0.51 1.7E-05 42.4 9.1 95 4-101 235-329 (411)
37 4a1s_A PINS, partner of inscut 91.9 0.81 2.8E-05 41.1 9.7 148 27-179 218-370 (411)
38 3mkr_A Coatomer subunit epsilo 91.8 1.1 3.8E-05 39.2 10.4 83 4-104 113-195 (291)
39 3qky_A Outer membrane assembly 91.8 5.1 0.00017 33.5 14.4 93 4-105 27-127 (261)
40 1elw_A TPR1-domain of HOP; HOP 91.4 2.2 7.6E-05 30.0 10.1 86 4-104 16-101 (118)
41 2dba_A Smooth muscle cell asso 91.2 3 0.0001 30.9 11.1 89 4-104 40-128 (148)
42 3as5_A MAMA; tetratricopeptide 91.1 4.1 0.00014 31.1 14.3 86 4-104 20-105 (186)
43 3q15_A PSP28, response regulat 91.0 1.5 5.3E-05 39.3 10.6 109 5-118 25-144 (378)
44 4i17_A Hypothetical protein; T 90.9 1.6 5.6E-05 35.7 10.0 92 5-104 55-146 (228)
45 3mv2_B Coatomer subunit epsilo 90.8 0.45 1.5E-05 43.0 6.6 97 2-106 110-209 (310)
46 2qfc_A PLCR protein; TPR, HTH, 90.7 2 6.8E-05 37.1 10.8 96 4-103 87-183 (293)
47 3u4t_A TPR repeat-containing p 90.7 2.6 8.9E-05 35.1 11.2 158 4-183 15-173 (272)
48 2lni_A Stress-induced-phosphop 90.6 2 6.7E-05 31.2 9.3 86 4-104 28-113 (133)
49 2ifu_A Gamma-SNAP; membrane fu 90.5 5.2 0.00018 34.8 13.4 72 30-105 74-145 (307)
50 2xev_A YBGF; tetratricopeptide 90.4 3.2 0.00011 30.2 10.3 93 4-105 14-106 (129)
51 2vyi_A SGTA protein; chaperone 90.3 2.9 9.9E-05 29.9 9.9 86 4-104 24-109 (131)
52 2ho1_A Type 4 fimbrial biogene 90.0 7 0.00024 32.0 14.0 84 5-103 50-133 (252)
53 1sfx_A Conserved hypothetical 90.0 3.6 0.00012 29.6 10.2 67 215-283 32-100 (109)
54 2vq2_A PILW, putative fimbrial 89.8 6.4 0.00022 31.2 14.0 85 4-103 20-105 (225)
55 1xnf_A Lipoprotein NLPI; TPR, 89.7 2.5 8.5E-05 35.1 10.2 92 2-104 15-106 (275)
56 2pzi_A Probable serine/threoni 89.6 6.6 0.00023 38.8 14.7 160 4-183 403-565 (681)
57 2ifu_A Gamma-SNAP; membrane fu 89.3 4 0.00014 35.6 11.6 69 31-103 115-183 (307)
58 2k02_A Ferrous iron transport 88.9 0.76 2.6E-05 33.5 5.3 42 209-250 8-49 (87)
59 3edt_B KLC 2, kinesin light ch 88.9 1.8 6E-05 35.9 8.6 99 4-103 97-197 (283)
60 1xn7_A Hypothetical protein YH 88.8 0.71 2.4E-05 32.8 5.1 39 210-248 9-47 (78)
61 3ulq_A Response regulator aspa 88.7 2.6 9.1E-05 37.6 10.2 103 5-112 25-140 (383)
62 3nf1_A KLC 1, kinesin light ch 88.2 2.1 7E-05 36.3 8.8 100 3-103 122-223 (311)
63 1na0_A Designed protein CTPR3; 88.1 5.3 0.00018 28.1 9.9 86 4-104 21-106 (125)
64 1a17_A Serine/threonine protei 88.1 4.4 0.00015 30.7 9.9 86 4-104 25-110 (166)
65 3sz7_A HSC70 cochaperone (SGT) 88.1 4.2 0.00014 31.4 9.9 86 4-104 23-108 (164)
66 3ieg_A DNAJ homolog subfamily 88.0 12 0.0004 32.0 15.7 161 5-183 167-337 (359)
67 4gco_A Protein STI-1; structur 88.0 6.8 0.00023 29.3 11.0 83 5-103 26-109 (126)
68 3q49_B STIP1 homology and U bo 88.0 4.9 0.00017 29.5 9.9 85 4-103 21-105 (137)
69 1qgp_A Protein (double strande 87.9 3 0.0001 29.3 7.9 38 217-254 31-68 (77)
70 3upv_A Heat shock protein STI1 87.8 5.3 0.00018 29.1 9.9 84 4-103 16-100 (126)
71 3edt_B KLC 2, kinesin light ch 87.7 1.3 4.6E-05 36.7 7.1 99 4-104 55-156 (283)
72 1na3_A Designed protein CTPR2; 87.6 3.8 0.00013 27.6 8.5 70 26-104 3-72 (91)
73 2kck_A TPR repeat; tetratricop 87.6 4.3 0.00015 28.2 9.0 89 4-105 18-107 (112)
74 3k9i_A BH0479 protein; putativ 87.5 2.8 9.7E-05 30.6 8.1 88 5-104 3-90 (117)
75 2q7f_A YRRB protein; TPR, prot 87.4 10 0.00034 30.6 15.0 61 33-102 92-152 (243)
76 4i17_A Hypothetical protein; T 87.4 10 0.00035 30.7 12.8 136 33-183 8-148 (228)
77 3mkr_A Coatomer subunit epsilo 87.2 4.4 0.00015 35.3 10.4 121 3-142 141-262 (291)
78 2ho1_A Type 4 fimbrial biogene 87.2 11 0.00036 30.8 12.5 88 4-104 83-170 (252)
79 2xcb_A PCRH, regulatory protei 87.2 7.9 0.00027 29.1 11.3 66 30-104 16-81 (142)
80 2q7f_A YRRB protein; TPR, prot 86.8 5.7 0.00019 32.1 10.5 87 4-105 35-121 (243)
81 2pl2_A Hypothetical conserved 86.8 12 0.0004 30.6 13.7 155 4-183 17-182 (217)
82 3nf1_A KLC 1, kinesin light ch 86.7 1.4 4.8E-05 37.4 6.7 99 4-104 39-140 (311)
83 3ieg_A DNAJ homolog subfamily 86.6 9.7 0.00033 32.5 12.4 96 4-104 200-301 (359)
84 2v5f_A Prolyl 4-hydroxylase su 86.6 1.8 6.2E-05 31.5 6.5 69 33-103 6-74 (104)
85 1ub9_A Hypothetical protein PH 86.4 6.6 0.00022 27.9 9.4 67 215-283 28-97 (100)
86 2fo7_A Synthetic consensus TPR 86.0 6.9 0.00023 27.8 9.6 86 4-104 13-98 (136)
87 1w3b_A UDP-N-acetylglucosamine 85.9 18 0.0006 31.9 16.5 85 4-103 11-95 (388)
88 4eqf_A PEX5-related protein; a 85.7 4 0.00014 35.8 9.5 25 80-104 182-206 (365)
89 1rz4_A Eukaryotic translation 85.7 1.2 4.1E-05 38.3 5.6 91 149-261 98-190 (226)
90 2y4t_A DNAJ homolog subfamily 85.5 20 0.00067 32.1 14.7 68 32-104 94-172 (450)
91 1qbj_A Protein (double-strande 85.4 1.9 6.6E-05 30.7 5.8 51 208-259 15-68 (81)
92 2vgx_A Chaperone SYCD; alterna 85.3 11 0.00037 28.9 11.5 66 30-104 19-84 (148)
93 1hxi_A PEX5, peroxisome target 85.0 9.7 0.00033 28.1 10.3 85 4-103 29-113 (121)
94 3uq3_A Heat shock protein STI1 84.9 11 0.00039 30.4 11.5 15 4-18 91-105 (258)
95 2vgx_A Chaperone SYCD; alterna 84.6 6.8 0.00023 30.1 9.4 85 4-103 33-117 (148)
96 2fbn_A 70 kDa peptidylprolyl i 84.6 6.4 0.00022 31.4 9.6 92 4-104 50-151 (198)
97 1hh8_A P67PHOX, NCF-2, neutrop 84.2 7.7 0.00026 30.9 9.9 83 4-104 18-100 (213)
98 2xcb_A PCRH, regulatory protei 84.2 7.6 0.00026 29.2 9.4 85 4-103 30-114 (142)
99 3rkv_A Putative peptidylprolyl 84.0 7.7 0.00026 29.8 9.5 92 4-104 23-126 (162)
100 3qky_A Outer membrane assembly 83.8 17 0.00058 30.1 12.3 68 32-105 15-82 (261)
101 3r0a_A Putative transcriptiona 83.7 11 0.00039 28.4 10.1 35 218-252 43-77 (123)
102 4b4t_P 26S proteasome regulato 83.4 10 0.00035 35.6 11.6 70 30-102 135-204 (445)
103 2jt1_A PEFI protein; solution 83.3 3.1 0.00011 29.3 6.0 34 216-249 23-56 (77)
104 3sz7_A HSC70 cochaperone (SGT) 82.9 14 0.00048 28.3 12.0 68 28-104 7-74 (164)
105 2vsy_A XCC0866; transferase, g 82.9 13 0.00044 35.3 12.3 85 5-104 2-86 (568)
106 4gyw_A UDP-N-acetylglucosamine 82.7 12 0.00042 37.4 12.4 151 3-178 20-171 (723)
107 3hym_B Cell division cycle pro 82.5 8.4 0.00029 32.6 10.0 94 5-104 172-265 (330)
108 2y4t_A DNAJ homolog subfamily 82.5 8.6 0.00029 34.5 10.5 96 4-104 223-324 (450)
109 2fbi_A Probable transcriptiona 82.2 14 0.00047 27.8 10.4 44 215-258 48-91 (142)
110 3urz_A Uncharacterized protein 81.8 9.6 0.00033 30.9 9.6 92 4-104 16-117 (208)
111 3upv_A Heat shock protein STI1 81.8 13 0.00043 27.0 11.5 65 31-104 3-67 (126)
112 3qou_A Protein YBBN; thioredox 81.5 19 0.00065 30.8 12.0 134 33-184 118-251 (287)
113 2vq2_A PILW, putative fimbrial 81.4 11 0.00036 29.8 9.7 85 4-101 54-139 (225)
114 3n71_A Histone lysine methyltr 81.3 6.5 0.00022 37.5 9.5 98 4-102 321-420 (490)
115 2fbh_A Transcriptional regulat 81.3 13 0.00046 28.0 9.8 44 214-257 49-92 (146)
116 1hz4_A MALT regulatory protein 81.3 11 0.00036 33.2 10.4 97 4-104 26-122 (373)
117 3qww_A SET and MYND domain-con 81.1 7.3 0.00025 36.5 9.6 99 4-103 310-410 (433)
118 2heo_A Z-DNA binding protein 1 81.1 5.1 0.00017 27.1 6.4 34 216-249 24-57 (67)
119 2e2e_A Formate-dependent nitri 81.0 17 0.00058 28.0 12.0 86 4-104 22-110 (177)
120 2a61_A Transcriptional regulat 80.6 16 0.00056 27.5 10.1 43 215-257 45-87 (145)
121 1ku9_A Hypothetical protein MJ 80.5 8.6 0.0003 29.2 8.5 42 216-257 40-81 (152)
122 3txn_A 26S proteasome regulato 80.5 7.2 0.00025 36.2 9.1 68 35-105 102-169 (394)
123 1elw_A TPR1-domain of HOP; HOP 80.4 12 0.00041 25.9 10.0 65 31-104 3-67 (118)
124 2nnn_A Probable transcriptiona 80.3 15 0.00052 27.5 9.8 43 215-257 50-92 (140)
125 1s3j_A YUSO protein; structura 80.1 12 0.00043 28.6 9.4 42 215-256 49-90 (155)
126 1jgs_A Multiple antibiotic res 80.0 12 0.00042 28.0 9.1 43 215-257 46-88 (138)
127 1elr_A TPR2A-domain of HOP; HO 79.8 11 0.00039 26.6 8.6 64 31-103 3-66 (131)
128 2xpi_A Anaphase-promoting comp 79.7 27 0.00091 32.6 13.2 50 4-59 385-434 (597)
129 1r7j_A Conserved hypothetical 79.7 15 0.0005 26.7 8.9 58 218-278 21-78 (95)
130 3ma5_A Tetratricopeptide repea 79.4 9.4 0.00032 26.9 7.8 62 33-103 8-69 (100)
131 2gw1_A Mitochondrial precursor 79.3 23 0.00077 32.1 12.3 161 4-183 201-369 (514)
132 2v79_A DNA replication protein 79.3 2.8 9.7E-05 32.9 5.1 46 215-260 49-96 (135)
133 1fch_A Peroxisomal targeting s 79.2 20 0.0007 30.9 11.5 27 34-60 134-160 (368)
134 3u4t_A TPR repeat-containing p 79.0 25 0.00086 28.8 12.3 135 33-183 4-139 (272)
135 1z7u_A Hypothetical protein EF 78.9 6.3 0.00021 29.3 6.9 42 216-257 34-76 (112)
136 2xpi_A Anaphase-promoting comp 78.9 24 0.00082 33.0 12.6 53 3-62 283-335 (597)
137 3oop_A LIN2960 protein; protei 78.8 11 0.00037 28.7 8.5 41 216-256 50-90 (143)
138 4abn_A Tetratricopeptide repea 78.6 42 0.0014 31.1 14.5 85 4-104 114-208 (474)
139 3eco_A MEPR; mutlidrug efflux 78.5 15 0.00052 27.6 9.3 42 216-257 46-87 (139)
140 4eqf_A PEX5-related protein; a 78.5 18 0.00063 31.4 11.0 89 3-104 188-276 (365)
141 2frh_A SARA, staphylococcal ac 78.0 10 0.00035 28.6 8.0 42 216-257 52-93 (127)
142 2gxg_A 146AA long hypothetical 77.9 14 0.00049 27.9 9.0 42 215-256 48-89 (146)
143 3bpv_A Transcriptional regulat 77.9 14 0.00047 27.7 8.8 44 215-258 41-84 (138)
144 3as5_A MAMA; tetratricopeptide 77.7 20 0.00069 26.9 11.3 67 29-104 5-71 (186)
145 3qwp_A SET and MYND domain-con 77.4 9.4 0.00032 35.6 9.0 98 4-103 299-399 (429)
146 3cv0_A Peroxisome targeting si 77.4 31 0.0011 28.9 13.9 27 33-59 90-116 (327)
147 3gyz_A Chaperone protein IPGC; 77.1 8.7 0.0003 30.0 7.6 86 4-104 48-133 (151)
148 2rdp_A Putative transcriptiona 77.0 16 0.00055 27.8 9.1 43 215-257 54-96 (150)
149 1lj9_A Transcriptional regulat 76.9 17 0.00059 27.4 9.2 43 215-257 41-83 (144)
150 2kc7_A BFR218_protein; tetratr 76.7 14 0.00046 25.4 7.9 61 36-104 4-64 (99)
151 3s2w_A Transcriptional regulat 76.3 14 0.00047 28.8 8.6 43 215-257 62-104 (159)
152 4gco_A Protein STI-1; structur 76.3 21 0.00071 26.4 11.8 66 30-104 11-76 (126)
153 2nyx_A Probable transcriptiona 76.0 18 0.00063 28.4 9.4 43 215-257 57-99 (168)
154 3bja_A Transcriptional regulat 75.9 13 0.00043 27.9 8.1 43 215-257 45-87 (139)
155 4b8x_A SCO5413, possible MARR- 75.5 25 0.00086 27.1 9.9 44 214-257 48-91 (147)
156 3bj6_A Transcriptional regulat 75.5 15 0.00051 28.1 8.5 42 215-256 52-93 (152)
157 4ga2_A E3 SUMO-protein ligase 75.4 6.1 0.00021 30.4 6.1 82 3-100 42-124 (150)
158 4f3v_A ESX-1 secretion system 75.2 20 0.00069 31.5 10.1 88 4-105 114-201 (282)
159 2c2l_A CHIP, carboxy terminus 75.1 16 0.00055 31.2 9.5 85 4-103 16-100 (281)
160 2gw1_A Mitochondrial precursor 74.8 28 0.00096 31.5 11.5 86 4-105 18-103 (514)
161 3ffl_A Anaphase-promoting comp 74.8 14 0.00047 30.1 8.2 71 33-103 21-91 (167)
162 2htj_A P fimbrial regulatory p 74.8 8.9 0.00031 26.6 6.3 34 216-249 13-46 (81)
163 2yhc_A BAMD, UPF0169 lipoprote 74.7 32 0.0011 27.9 11.8 25 80-104 152-176 (225)
164 1p5q_A FKBP52, FK506-binding p 74.7 21 0.00073 31.5 10.4 92 4-104 159-259 (336)
165 2xev_A YBGF; tetratricopeptide 74.6 21 0.0007 25.5 11.1 64 35-104 5-68 (129)
166 3rkv_A Putative peptidylprolyl 74.4 19 0.00065 27.4 8.9 75 30-104 9-92 (162)
167 3qou_A Protein YBBN; thioredox 74.3 24 0.00083 30.1 10.4 137 4-160 129-265 (287)
168 2ia0_A Putative HTH-type trans 74.3 14 0.00047 29.8 8.2 41 214-254 28-71 (171)
169 3k0l_A Repressor protein; heli 74.2 16 0.00056 28.4 8.5 43 215-257 58-100 (162)
170 2hr3_A Probable transcriptiona 74.1 20 0.00067 27.2 8.8 43 215-257 48-90 (147)
171 2eth_A Transcriptional regulat 74.1 21 0.00072 27.5 9.1 42 216-257 57-98 (154)
172 2oqg_A Possible transcriptiona 74.1 22 0.00075 25.8 8.8 37 216-252 33-69 (114)
173 2l6j_A TPR repeat-containing p 73.9 19 0.00065 24.8 8.4 79 4-91 16-94 (111)
174 3g3z_A NMB1585, transcriptiona 73.8 12 0.00041 28.5 7.5 42 215-256 43-84 (145)
175 2fbn_A 70 kDa peptidylprolyl i 73.8 31 0.0011 27.2 12.8 75 30-104 36-117 (198)
176 2kat_A Uncharacterized protein 73.4 21 0.00072 25.3 8.4 62 33-103 20-81 (115)
177 3cv0_A Peroxisome targeting si 73.0 19 0.00066 30.2 9.4 86 4-104 33-118 (327)
178 2kck_A TPR repeat; tetratricop 72.8 17 0.00059 24.8 7.7 62 34-104 8-69 (112)
179 1hz4_A MALT regulatory protein 72.7 28 0.00096 30.4 10.7 94 4-102 227-320 (373)
180 3tgn_A ADC operon repressor AD 72.6 22 0.00074 26.9 8.7 42 215-257 50-91 (146)
181 4g1t_A Interferon-induced prot 72.4 51 0.0017 29.6 12.7 101 4-104 63-167 (472)
182 1p5q_A FKBP52, FK506-binding p 72.3 44 0.0015 29.3 11.9 74 31-104 146-225 (336)
183 2d1h_A ST1889, 109AA long hypo 72.1 23 0.0008 25.1 9.6 41 215-255 34-74 (109)
184 2yhc_A BAMD, UPF0169 lipoprote 71.9 37 0.0013 27.5 10.7 96 4-105 108-214 (225)
185 1wao_1 Serine/threonine protei 71.9 23 0.00077 33.2 10.3 88 2-104 16-103 (477)
186 3fp2_A TPR repeat-containing p 71.8 22 0.00074 32.6 10.0 85 4-104 255-339 (537)
187 3cjn_A Transcriptional regulat 71.8 25 0.00086 27.2 9.1 42 215-256 64-105 (162)
188 1tbx_A ORF F-93, hypothetical 71.7 24 0.00082 25.0 8.6 68 215-284 20-91 (99)
189 1hh8_A P67PHOX, NCF-2, neutrop 71.7 31 0.0011 27.1 9.9 93 4-105 49-151 (213)
190 3gyz_A Chaperone protein IPGC; 71.6 29 0.00099 26.9 9.4 65 31-104 35-99 (151)
191 2cfx_A HTH-type transcriptiona 71.5 8.1 0.00028 30.0 6.0 41 214-254 16-59 (144)
192 3e6m_A MARR family transcripti 71.5 19 0.00066 28.0 8.3 42 215-256 65-106 (161)
193 1a17_A Serine/threonine protei 71.2 29 0.00099 25.7 11.2 69 27-104 8-76 (166)
194 3ech_A MEXR, multidrug resista 71.2 9.8 0.00034 28.9 6.4 43 215-257 49-91 (142)
195 1hxi_A PEX5, peroxisome target 71.2 12 0.00042 27.4 6.8 64 32-104 17-80 (121)
196 1ihg_A Cyclophilin 40; ppiase 71.2 15 0.00051 33.2 8.6 91 4-104 235-336 (370)
197 1xnf_A Lipoprotein NLPI; TPR, 71.0 24 0.00082 28.8 9.3 86 4-104 55-140 (275)
198 3q49_B STIP1 homology and U bo 70.9 27 0.00091 25.2 10.3 65 31-104 8-72 (137)
199 3bro_A Transcriptional regulat 70.6 21 0.00073 26.7 8.2 40 217-256 50-89 (141)
200 1fch_A Peroxisomal targeting s 70.5 27 0.00092 30.1 9.9 84 5-101 194-277 (368)
201 3f6o_A Probable transcriptiona 70.3 18 0.00061 26.9 7.5 77 216-294 30-107 (118)
202 3f3x_A Transcriptional regulat 69.8 30 0.001 26.1 9.0 40 219-258 52-91 (144)
203 1kt0_A FKBP51, 51 kDa FK506-bi 69.3 28 0.00095 32.3 10.2 92 4-104 280-380 (457)
204 1na0_A Designed protein CTPR3; 69.0 26 0.00088 24.3 11.5 68 28-104 5-72 (125)
205 4gyw_A UDP-N-acetylglucosamine 68.7 57 0.0019 32.5 12.9 134 32-183 9-142 (723)
206 3bdd_A Regulatory protein MARR 68.5 14 0.00047 27.8 6.7 42 215-256 43-84 (142)
207 2y75_A HTH-type transcriptiona 68.2 12 0.0004 28.4 6.2 44 216-259 25-68 (129)
208 3nqo_A MARR-family transcripti 68.1 24 0.00082 28.5 8.4 43 215-257 55-97 (189)
209 2p5v_A Transcriptional regulat 68.1 9.4 0.00032 30.2 5.8 40 215-254 22-64 (162)
210 3deu_A Transcriptional regulat 67.4 24 0.00084 27.7 8.2 47 215-261 66-115 (166)
211 2lni_A Stress-induced-phosphop 67.3 30 0.001 24.4 10.6 70 26-104 10-79 (133)
212 2dba_A Smooth muscle cell asso 67.2 33 0.0011 24.8 12.0 69 30-104 26-94 (148)
213 2cg4_A Regulatory protein ASNC 67.1 9.3 0.00032 29.9 5.5 40 215-254 20-62 (152)
214 2bv6_A MGRA, HTH-type transcri 66.9 20 0.00069 27.0 7.4 43 215-257 49-91 (142)
215 3hym_B Cell division cycle pro 66.6 56 0.0019 27.2 14.6 23 81-103 165-187 (330)
216 3urz_A Uncharacterized protein 66.5 48 0.0016 26.5 10.4 73 32-104 4-83 (208)
217 3cdh_A Transcriptional regulat 66.4 18 0.00062 27.8 7.1 42 215-256 55-96 (155)
218 3nrv_A Putative transcriptiona 65.7 15 0.0005 28.0 6.4 42 215-256 52-93 (148)
219 2dbb_A Putative HTH-type trans 65.6 10 0.00035 29.5 5.5 41 214-254 20-63 (151)
220 2fa5_A Transcriptional regulat 65.4 25 0.00085 27.1 7.8 43 215-257 61-103 (162)
221 1kt0_A FKBP51, 51 kDa FK506-bi 65.0 61 0.0021 29.9 11.7 75 30-104 266-346 (457)
222 2vsy_A XCC0866; transferase, g 64.8 59 0.002 30.6 11.7 86 4-104 35-120 (568)
223 3cuo_A Uncharacterized HTH-typ 64.6 33 0.0011 24.0 8.8 39 216-254 37-75 (99)
224 1w3b_A UDP-N-acetylglucosamine 64.5 72 0.0024 27.8 15.2 51 4-60 147-197 (388)
225 2w25_A Probable transcriptiona 63.9 14 0.00046 28.8 5.9 40 215-254 19-61 (150)
226 2qww_A Transcriptional regulat 63.8 15 0.00052 28.1 6.2 42 215-256 53-96 (154)
227 3lwf_A LIN1550 protein, putati 63.1 14 0.00049 29.5 5.9 48 216-263 43-90 (159)
228 2hzt_A Putative HTH-type trans 62.1 31 0.0011 25.1 7.3 43 215-257 25-68 (107)
229 3hsr_A HTH-type transcriptiona 61.9 27 0.00091 26.4 7.2 43 215-257 48-90 (140)
230 2pl2_A Hypothetical conserved 61.5 62 0.0021 26.0 11.3 63 33-104 6-68 (217)
231 1xd7_A YWNA; structural genomi 61.4 12 0.00042 29.2 5.1 49 209-259 16-64 (145)
232 3jth_A Transcription activator 60.8 41 0.0014 23.7 7.8 37 216-252 35-71 (98)
233 1ucr_A Protein DSVD; dissimila 60.7 11 0.00037 26.6 4.0 35 213-247 17-52 (78)
234 3u2r_A Regulatory protein MARR 60.3 35 0.0012 26.6 7.9 43 216-258 61-103 (168)
235 3fp2_A TPR repeat-containing p 60.0 20 0.00068 32.9 7.2 50 46-104 442-491 (537)
236 2pex_A Transcriptional regulat 59.3 21 0.00073 27.3 6.3 42 215-256 59-100 (153)
237 2if4_A ATFKBP42; FKBP-like, al 59.1 31 0.001 30.5 8.1 92 3-103 190-292 (338)
238 2kko_A Possible transcriptiona 59.1 35 0.0012 24.9 7.1 37 216-252 37-73 (108)
239 2e1c_A Putative HTH-type trans 59.0 12 0.0004 30.2 4.8 41 214-254 38-81 (171)
240 1ldd_A APC2WHB, anaphase promo 58.7 36 0.0012 23.7 6.5 41 209-249 14-65 (74)
241 4hbl_A Transcriptional regulat 58.6 15 0.00053 28.1 5.3 43 215-257 53-95 (149)
242 3t8r_A Staphylococcus aureus C 58.1 15 0.0005 28.8 5.0 44 216-259 27-70 (143)
243 3kp7_A Transcriptional regulat 57.8 28 0.00097 26.5 6.7 44 214-257 48-93 (151)
244 3l7w_A Putative uncharacterize 57.5 29 0.00099 25.4 6.4 65 223-287 32-98 (108)
245 3i4p_A Transcriptional regulat 56.9 13 0.00044 29.6 4.6 43 212-254 12-57 (162)
246 3boq_A Transcriptional regulat 56.8 23 0.0008 27.2 6.1 44 214-257 59-102 (160)
247 2cyy_A Putative HTH-type trans 56.2 14 0.00046 28.9 4.6 39 215-253 19-60 (151)
248 3mkq_A Coatomer beta'-subunit; 56.2 93 0.0032 30.2 11.7 61 34-101 683-749 (814)
249 3tqn_A Transcriptional regulat 56.1 32 0.0011 25.5 6.5 45 213-259 28-73 (113)
250 2qvo_A Uncharacterized protein 55.9 50 0.0017 23.2 8.3 45 217-261 30-74 (95)
251 3fm5_A Transcriptional regulat 55.8 26 0.00089 26.7 6.2 42 216-257 53-94 (150)
252 3n71_A Histone lysine methyltr 55.5 64 0.0022 30.5 10.0 97 4-102 363-462 (490)
253 3df8_A Possible HXLR family tr 55.2 24 0.00081 26.1 5.6 36 217-252 42-78 (111)
254 1oyi_A Double-stranded RNA-bin 55.0 13 0.00043 26.6 3.7 32 218-249 31-62 (82)
255 1z91_A Organic hydroperoxide r 54.9 22 0.00074 26.9 5.6 42 215-256 52-93 (147)
256 2k9l_A RNA polymerase sigma fa 54.3 11 0.00036 26.3 3.2 26 215-240 46-71 (76)
257 2fo7_A Synthetic consensus TPR 53.8 52 0.0018 22.7 13.1 62 34-104 3-64 (136)
258 1i1g_A Transcriptional regulat 53.6 15 0.00053 28.0 4.5 35 215-249 16-50 (141)
259 2vyi_A SGTA protein; chaperone 53.2 53 0.0018 22.7 12.4 68 28-104 8-75 (131)
260 1ihg_A Cyclophilin 40; ppiase 52.4 86 0.0029 28.0 10.0 75 30-104 221-302 (370)
261 2pi2_A Replication protein A 3 52.2 3 0.0001 36.7 0.0 38 216-253 223-261 (270)
262 4abn_A Tetratricopeptide repea 52.1 1.4E+02 0.0049 27.3 12.9 85 4-104 149-250 (474)
263 3jw4_A Transcriptional regulat 51.5 19 0.00064 27.5 4.7 43 216-258 56-98 (148)
264 4aik_A Transcriptional regulat 51.2 81 0.0028 24.2 8.9 42 216-257 45-86 (151)
265 1q1h_A TFE, transcription fact 51.1 21 0.00071 26.0 4.7 35 216-250 32-66 (110)
266 1ylf_A RRF2 family protein; st 49.5 17 0.00059 28.4 4.2 43 216-259 29-71 (149)
267 3k9i_A BH0479 protein; putativ 49.4 58 0.002 23.0 7.0 54 45-104 3-56 (117)
268 2pn6_A ST1022, 150AA long hypo 49.0 22 0.00075 27.5 4.7 40 215-254 15-57 (150)
269 2c2l_A CHIP, carboxy terminus 48.9 1.2E+02 0.0041 25.5 10.9 63 33-104 5-67 (281)
270 3mkq_B Coatomer subunit alpha; 48.9 1.1E+02 0.0037 24.9 9.2 80 4-101 17-102 (177)
271 2r5s_A Uncharacterized protein 48.3 89 0.003 23.9 11.0 134 33-184 7-140 (176)
272 2fsw_A PG_0823 protein; alpha- 47.3 63 0.0022 23.3 6.8 43 215-257 36-79 (107)
273 2h6f_A Protein farnesyltransfe 46.9 1.6E+02 0.0055 26.4 13.3 136 31-184 96-232 (382)
274 3k69_A Putative transcription 46.8 19 0.00063 28.9 4.0 43 216-258 27-69 (162)
275 2fxa_A Protease production reg 46.2 38 0.0013 27.9 6.0 42 216-257 61-102 (207)
276 3by6_A Predicted transcription 46.1 44 0.0015 25.3 6.0 46 213-260 30-76 (126)
277 2l6j_A TPR repeat-containing p 45.9 67 0.0023 21.8 12.0 65 32-105 4-68 (111)
278 4a5n_A Uncharacterized HTH-typ 45.9 84 0.0029 24.1 7.6 63 215-277 37-107 (131)
279 1z05_A Transcriptional regulat 45.2 33 0.0011 31.6 6.1 46 204-249 37-85 (429)
280 1z6r_A MLC protein; transcript 45.2 28 0.00095 31.8 5.5 46 204-249 14-62 (406)
281 3neu_A LIN1836 protein; struct 45.2 42 0.0015 25.3 5.7 47 213-261 32-79 (125)
282 3mv2_B Coatomer subunit epsilo 44.8 1.7E+02 0.0057 25.9 12.3 128 4-143 148-281 (310)
283 2pg4_A Uncharacterized protein 44.3 29 0.001 24.4 4.4 45 217-261 30-76 (95)
284 2vn2_A DNAD, chromosome replic 44.1 16 0.00056 27.8 3.2 37 218-254 52-88 (128)
285 4ham_A LMO2241 protein; struct 43.8 60 0.0021 24.6 6.5 64 196-261 16-80 (134)
286 4gcn_A Protein STI-1; structur 43.5 91 0.0031 22.6 8.9 62 33-103 9-70 (127)
287 2p7v_B Sigma-70, RNA polymeras 43.0 42 0.0014 22.0 4.8 29 215-243 23-51 (68)
288 1u2w_A CADC repressor, cadmium 42.5 50 0.0017 24.6 5.7 35 216-250 55-89 (122)
289 1y0u_A Arsenical resistance op 42.4 32 0.0011 24.4 4.4 35 216-250 42-76 (96)
290 4b4t_R RPN7, 26S proteasome re 41.9 82 0.0028 29.0 8.2 67 34-106 133-199 (429)
291 4b0z_A RPN12, 26S proteasome r 41.8 89 0.003 26.3 7.8 95 5-102 20-123 (229)
292 3ma5_A Tetratricopeptide repea 41.2 62 0.0021 22.4 5.8 53 4-62 19-71 (100)
293 2gau_A Transcriptional regulat 40.4 63 0.0021 26.2 6.6 43 216-262 179-221 (232)
294 2if4_A ATFKBP42; FKBP-like, al 40.3 46 0.0016 29.3 6.0 74 31-104 178-259 (338)
295 1tc3_C Protein (TC3 transposas 39.7 52 0.0018 19.2 4.6 29 215-243 19-47 (51)
296 2f2e_A PA1607; transcription f 39.4 43 0.0015 26.0 5.0 42 215-256 35-76 (146)
297 1r1u_A CZRA, repressor protein 39.4 91 0.0031 22.3 6.6 37 216-252 38-74 (106)
298 1nd9_A Translation initiation 39.1 25 0.00087 21.5 3.0 25 217-241 2-26 (49)
299 2qlz_A Transcription factor PF 39.0 40 0.0014 28.7 5.1 45 214-261 175-219 (232)
300 2e2e_A Formate-dependent nitri 38.9 1.2E+02 0.0042 22.8 10.7 124 43-184 21-147 (177)
301 3pqk_A Biofilm growth-associat 38.8 1E+02 0.0034 21.8 7.3 39 216-254 35-73 (102)
302 1ngr_A P75 low affinity neurot 38.4 29 0.001 24.6 3.5 48 220-289 24-75 (85)
303 2r5s_A Uncharacterized protein 38.3 71 0.0024 24.5 6.3 83 4-102 52-135 (176)
304 2ek5_A Predicted transcription 38.0 65 0.0022 24.4 5.8 45 213-259 23-68 (129)
305 1uly_A Hypothetical protein PH 37.4 56 0.0019 26.7 5.6 35 216-250 32-66 (192)
306 2x4h_A Hypothetical protein SS 37.1 51 0.0017 24.7 5.1 36 214-249 28-63 (139)
307 2jpc_A SSRB; DNA binding prote 37.0 49 0.0017 20.9 4.3 29 214-242 10-38 (61)
308 2oz6_A Virulence factor regula 36.9 31 0.0011 27.5 4.0 32 217-248 164-195 (207)
309 2hoe_A N-acetylglucosamine kin 36.7 28 0.00096 31.5 4.0 50 199-249 13-65 (380)
310 2b0l_A GTP-sensing transcripti 36.6 49 0.0017 24.1 4.7 47 213-259 38-85 (102)
311 4g1t_A Interferon-induced prot 36.1 76 0.0026 28.4 6.9 76 27-103 46-122 (472)
312 1sfu_A 34L protein; protein/Z- 35.9 72 0.0024 22.2 5.0 36 215-250 27-62 (75)
313 1na3_A Designed protein CTPR2; 35.9 73 0.0025 20.6 5.3 53 4-62 21-73 (91)
314 1ku3_A Sigma factor SIGA; heli 35.9 45 0.0015 22.2 4.1 27 216-242 29-55 (73)
315 1xmk_A Double-stranded RNA-spe 35.8 96 0.0033 21.6 5.8 35 215-249 23-58 (79)
316 2kfs_A Conserved hypothetical 35.6 29 0.00098 27.6 3.3 33 216-252 30-63 (148)
317 3bhq_A Transcriptional regulat 35.1 39 0.0013 27.0 4.3 39 194-232 8-47 (211)
318 4ev0_A Transcription regulator 35.1 34 0.0012 27.4 4.0 44 215-262 161-204 (216)
319 1eij_A Hypothetical protein MT 34.7 28 0.00096 24.7 2.8 22 231-252 36-57 (80)
320 3ryp_A Catabolite gene activat 34.6 36 0.0012 27.1 4.0 32 217-248 167-198 (210)
321 3dv8_A Transcriptional regulat 34.5 35 0.0012 27.5 3.9 42 217-262 169-210 (220)
322 2k9m_A RNA polymerase sigma fa 34.0 29 0.001 26.8 3.1 26 215-240 37-62 (130)
323 2zcw_A TTHA1359, transcription 33.9 38 0.0013 27.0 4.0 43 216-262 145-187 (202)
324 1x3u_A Transcriptional regulat 33.7 98 0.0034 20.5 5.7 30 214-243 28-57 (79)
325 3iuo_A ATP-dependent DNA helic 33.6 47 0.0016 25.1 4.3 35 214-248 29-64 (122)
326 2fh0_A Hypothetical 16.0 kDa p 33.3 14 0.00049 26.2 1.1 22 231-252 34-55 (81)
327 3e97_A Transcriptional regulat 33.3 37 0.0013 27.7 3.9 43 216-262 174-216 (231)
328 1v4r_A Transcriptional repress 33.1 26 0.00088 25.3 2.6 44 214-259 31-75 (102)
329 3iwz_A CAP-like, catabolite ac 32.8 40 0.0014 27.3 4.0 32 217-248 187-218 (230)
330 3d0s_A Transcriptional regulat 32.6 38 0.0013 27.5 3.9 42 217-262 177-218 (227)
331 2lnb_A Z-DNA-binding protein 1 32.5 1.2E+02 0.004 21.3 5.6 41 208-248 25-65 (80)
332 3b02_A Transcriptional regulat 32.0 33 0.0011 27.2 3.4 42 217-262 139-180 (195)
333 2v9v_A Selenocysteine-specific 31.9 1.6E+02 0.0053 21.9 8.2 63 214-283 15-77 (135)
334 2xvc_A ESCRT-III, SSO0910; cel 31.9 76 0.0026 20.9 4.3 32 217-248 25-56 (59)
335 2o8x_A Probable RNA polymerase 31.8 44 0.0015 21.6 3.5 29 214-242 28-56 (70)
336 3la7_A Global nitrogen regulat 31.7 40 0.0014 27.9 3.9 43 217-263 193-235 (243)
337 3fx3_A Cyclic nucleotide-bindi 31.6 74 0.0025 25.9 5.6 40 218-262 179-218 (237)
338 3t72_q RNA polymerase sigma fa 31.3 64 0.0022 23.4 4.5 28 216-243 38-65 (99)
339 1tty_A Sigma-A, RNA polymerase 31.0 54 0.0018 22.8 4.0 27 216-242 37-63 (87)
340 1ouv_A Conserved hypothetical 30.9 2E+02 0.0068 23.3 8.3 82 4-104 18-107 (273)
341 3mzy_A RNA polymerase sigma-H 30.6 1.3E+02 0.0045 22.5 6.6 32 211-242 118-149 (164)
342 2h09_A Transcriptional regulat 29.9 1.8E+02 0.0062 22.0 7.6 35 216-250 53-87 (155)
343 1ft9_A Carbon monoxide oxidati 29.8 41 0.0014 27.3 3.6 32 217-248 163-194 (222)
344 1r1t_A Transcriptional repress 29.6 1.7E+02 0.0058 21.6 7.7 37 216-252 58-94 (122)
345 2fmy_A COOA, carbon monoxide o 29.5 44 0.0015 27.0 3.8 43 216-262 166-209 (220)
346 2fbk_A Transcriptional regulat 29.4 48 0.0016 26.2 3.9 40 217-256 86-125 (181)
347 2lkp_A Transcriptional regulat 29.4 1.6E+02 0.0055 21.2 7.1 35 216-250 44-78 (119)
348 1zyb_A Transcription regulator 29.3 44 0.0015 27.4 3.7 33 216-248 185-217 (232)
349 1on2_A Transcriptional regulat 29.1 1.8E+02 0.006 21.6 10.0 44 215-261 20-63 (142)
350 3dkw_A DNR protein; CRP-FNR, H 29.1 38 0.0013 27.4 3.3 33 216-248 177-209 (227)
351 3qbm_A TETR transcriptional re 29.0 68 0.0023 24.8 4.7 35 198-232 7-42 (199)
352 1fse_A GERE; helix-turn-helix 28.8 84 0.0029 20.4 4.5 29 214-242 23-51 (74)
353 3hug_A RNA polymerase sigma fa 28.6 50 0.0017 23.1 3.5 30 213-242 49-78 (92)
354 2fu4_A Ferric uptake regulatio 28.3 87 0.003 21.2 4.7 44 216-260 32-80 (83)
355 2wte_A CSA3; antiviral protein 28.3 1.8E+02 0.0063 24.6 7.6 63 215-279 164-230 (244)
356 2gen_A Probable transcriptiona 28.0 44 0.0015 26.4 3.4 34 199-232 8-42 (197)
357 3i5p_A Nucleoporin NUP170; hel 28.0 66 0.0023 30.9 5.1 47 76-123 218-264 (525)
358 3e6c_C CPRK, cyclic nucleotide 27.5 52 0.0018 27.2 3.9 65 216-284 176-247 (250)
359 4gns_B Protein CSD3, chitin bi 27.3 83 0.0029 31.7 5.9 57 32-97 337-393 (754)
360 3kcc_A Catabolite gene activat 27.3 54 0.0019 27.5 4.0 32 217-248 217-248 (260)
361 2pjp_A Selenocysteine-specific 27.3 61 0.0021 24.2 3.9 34 217-250 20-53 (121)
362 3f2g_A Alkylmercury lyase; MER 26.7 60 0.0021 27.5 4.1 28 215-242 34-61 (220)
363 3lsg_A Two-component response 26.6 1.1E+02 0.0039 21.5 5.2 25 217-241 19-43 (103)
364 2zkz_A Transcriptional repress 26.4 1.7E+02 0.0058 20.6 6.1 36 216-252 40-75 (99)
365 3t5x_A PCI domain-containing p 26.3 1.4E+02 0.0047 24.6 6.2 40 25-64 7-46 (203)
366 3mkq_A Coatomer beta'-subunit; 26.2 2.3E+02 0.0077 27.4 8.9 49 39-101 659-707 (814)
367 3cuq_B Vacuolar protein-sortin 26.2 2.1E+02 0.0073 23.8 7.5 43 216-260 167-209 (218)
368 2jsc_A Transcriptional regulat 26.1 1E+02 0.0034 22.7 4.9 36 217-252 34-69 (118)
369 2kat_A Uncharacterized protein 26.1 1.6E+02 0.0056 20.2 7.3 53 4-62 31-83 (115)
370 2k9s_A Arabinose operon regula 25.9 1.1E+02 0.0038 21.8 5.0 25 216-240 19-43 (107)
371 3c57_A Two component transcrip 25.8 99 0.0034 21.8 4.7 30 214-243 39-68 (95)
372 1ouv_A Conserved hypothetical 25.1 2.7E+02 0.0093 22.5 8.2 62 32-104 6-71 (273)
373 2kc7_A BFR218_protein; tetratr 25.1 1.5E+02 0.0052 19.6 7.5 53 4-62 12-65 (99)
374 4g26_A Pentatricopeptide repea 25.1 4.2E+02 0.014 24.6 12.6 140 5-162 83-222 (501)
375 1pc2_A Mitochondria fission pr 25.1 1.8E+02 0.006 22.9 6.4 53 6-62 49-101 (152)
376 2rnj_A Response regulator prot 24.8 87 0.003 21.8 4.1 30 214-243 41-70 (91)
377 2kvv_A Putative excisionase; D 24.7 1.7E+02 0.0057 20.5 5.3 55 217-276 10-69 (78)
378 2lfc_A Fumarate reductase, fla 24.3 52 0.0018 26.0 3.1 27 215-241 93-119 (160)
379 1uxc_A FRUR (1-57), fructose r 23.9 62 0.0021 21.5 3.0 21 218-238 1-21 (65)
380 1wao_1 Serine/threonine protei 23.8 1.2E+02 0.0042 28.0 6.1 60 36-104 10-69 (477)
381 3b73_A PHIH1 repressor-like pr 23.8 1.4E+02 0.0047 22.2 5.2 36 215-250 25-62 (111)
382 3col_A Putative transcription 23.6 77 0.0026 24.3 4.1 33 200-232 12-45 (196)
383 1je8_A Nitrate/nitrite respons 23.5 1.2E+02 0.0041 20.7 4.6 29 214-242 33-61 (82)
384 2bgc_A PRFA; bacterial infecti 23.5 61 0.0021 26.6 3.6 42 217-262 169-211 (238)
385 2g7s_A Transcriptional regulat 23.4 81 0.0028 24.1 4.2 33 200-232 10-43 (194)
386 3dpl_C Cullin-5; ubiquitin, NE 23.2 47 0.0016 30.4 3.0 31 215-245 213-243 (382)
387 3k2z_A LEXA repressor; winged 23.1 1.7E+02 0.0059 23.4 6.3 34 217-250 24-57 (196)
388 3on4_A Transcriptional regulat 23.1 82 0.0028 24.1 4.1 32 201-232 13-45 (191)
389 3ez9_A Para; DNA binding, wing 23.1 77 0.0026 28.8 4.4 54 197-250 22-76 (403)
390 3i71_A Ethanolamine utilizatio 23.0 1.5E+02 0.0051 19.5 4.5 37 214-250 15-51 (68)
391 3t5v_A Nuclear mRNA export pro 23.0 1.3E+02 0.0043 26.9 5.7 38 201-238 204-246 (316)
392 4fx0_A Probable transcriptiona 22.9 1.8E+02 0.0061 22.1 6.1 42 215-257 50-91 (148)
393 3geu_A Intercellular adhesion 22.8 82 0.0028 24.3 4.1 32 201-232 6-38 (189)
394 1j5y_A Transcriptional regulat 22.6 1.9E+02 0.0064 23.1 6.3 33 217-249 36-69 (187)
395 1t6s_A Conserved hypothetical 22.4 91 0.0031 25.0 4.2 58 202-263 10-73 (162)
396 3kkc_A TETR family transcripti 22.0 99 0.0034 23.4 4.4 36 197-232 11-47 (177)
397 2wm9_A Dedicator of cytokinesi 21.9 88 0.003 29.1 4.6 30 70-99 6-35 (428)
398 3f6v_A Possible transcriptiona 21.9 1.5E+02 0.005 23.1 5.3 38 215-252 69-106 (151)
399 2z99_A Putative uncharacterize 21.7 85 0.0029 26.5 4.0 59 201-263 17-79 (219)
400 3qww_A SET and MYND domain-con 21.6 4.1E+02 0.014 24.3 9.2 66 37-103 303-368 (433)
401 2hvu_A PDCD5-like protein; YMR 21.6 28 0.00097 26.5 0.9 22 231-252 69-90 (116)
402 3lwj_A Putative TETR-family tr 21.5 1E+02 0.0035 23.8 4.5 35 198-232 12-47 (202)
403 1wmg_A Netrin receptor UNC5H2; 21.5 1.3E+02 0.0043 22.0 4.5 46 220-288 34-85 (103)
404 3qkx_A Uncharacterized HTH-typ 21.4 1E+02 0.0036 23.4 4.4 34 199-232 9-43 (188)
405 2pzi_A Probable serine/threoni 21.3 1.9E+02 0.0066 28.0 7.2 84 4-103 445-528 (681)
406 3mn2_A Probable ARAC family tr 21.3 1.6E+02 0.0056 20.8 5.2 26 215-240 16-41 (108)
407 2xzm_8 RPS25E,; ribosome, tran 21.3 2.2E+02 0.0075 22.3 5.9 47 215-262 60-107 (143)
408 3cwr_A Transcriptional regulat 20.9 1.2E+02 0.0039 23.5 4.7 34 199-232 18-52 (208)
409 2p4w_A Transcriptional regulat 20.8 1.9E+02 0.0066 23.6 6.1 38 215-252 26-63 (202)
410 3egq_A TETR family transcripti 20.8 85 0.0029 23.7 3.7 32 201-232 7-39 (170)
411 3cjd_A Transcriptional regulat 20.8 1.1E+02 0.0039 24.0 4.6 35 198-232 12-47 (198)
412 2jxn_A Uncharacterized protein 20.7 32 0.0011 26.6 1.0 22 231-252 69-90 (127)
413 1sgm_A Putative HTH-type trans 20.5 83 0.0028 24.1 3.6 28 203-230 11-39 (191)
414 2eh3_A Transcriptional regulat 20.5 92 0.0032 23.8 3.9 31 202-232 6-37 (179)
415 1yyv_A Putative transcriptiona 20.4 2.7E+02 0.0094 20.8 9.8 43 215-257 46-89 (131)
416 3vp5_A Transcriptional regulat 20.4 91 0.0031 24.3 3.9 32 201-232 15-47 (189)
417 3lmm_A Uncharacterized protein 20.4 21 0.00073 34.8 0.0 40 208-247 521-560 (583)
418 3anp_C Transcriptional repress 20.3 1.4E+02 0.0047 23.3 5.0 35 198-232 9-44 (204)
419 3dew_A Transcriptional regulat 20.3 1E+02 0.0034 23.8 4.1 32 201-232 11-43 (206)
420 2cru_A Programmed cell death p 20.1 34 0.0012 26.1 1.1 22 231-252 66-87 (118)
No 1
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-65 Score=496.57 Aligned_cols=299 Identities=40% Similarity=0.699 Sum_probs=243.8
Q ss_pred CCCccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHH
Q psy4458 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRL 80 (303)
Q Consensus 1 i~e~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~ 80 (303)
|+|++|++.+|+++|+++++||+++|+..+|++++|+|+|+|++.+||.+|+.+++||+.+.+...+ +++++.+|+.|
T Consensus 146 i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~--~~~lk~~~~~~ 223 (445)
T 4b4t_P 146 IKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK--YESLKLEYYNL 223 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC--CHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC--cHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999988876666 78999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHhCCCCchhhHhHHHhhhhhhcCCchHHHHHHHHh
Q psy4458 81 MIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWF 160 (303)
Q Consensus 81 ~~~~~~~~~~f~eaa~~y~e~~~t~~~~~~~~~~~~~L~~~v~~~iLs~~~~~r~~ll~~l~~~~~~~~~p~~~~L~~~f 160 (303)
+|+++.+.++|.+||++|++++.++.+.+++..+..+|+++|+|.||+|+++++++++++++.+++++++|.|+.|+++|
T Consensus 224 ~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f 303 (445)
T 4b4t_P 224 LVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLF 303 (445)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHH
Confidence 99999999999999999999999998888888888999999999999999999999999999999999999999999999
Q ss_pred cCCcccCchHHHHHHHHhhcccccccccchhHHhHHHHHHHHHHHHHHHHHHhhhceeeHHHHHHHhCCCHHHHHHHHHh
Q psy4458 161 TNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSS 240 (303)
Q Consensus 161 ~~~~li~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~i~ehNi~~isk~Y~~Itl~~la~ll~ls~~~vE~~l~~ 240 (303)
.+++|++|+.+...|...|.+|+++ ...+.+..||..|+++++|||++++++||++|+|++||++||+|++++|..+++
T Consensus 304 ~~~~L~~~~~~~~~~~~~L~~~~~~-~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~~~evE~~ls~ 382 (445)
T 4b4t_P 304 TTNELMRWPIVQKTYEPVLNEDDLA-FGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISD 382 (445)
T ss_dssp HHCCSSSHHHHHHHTCSSTTTCCSS-CCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HhchHhhhHHHHHHHHHHhcccchh-hhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcCHHHHHHHHHH
Confidence 9999999999889999999999986 233344678999999999999999999999999999999999999999999999
Q ss_pred hhhcCceEEEecCCCceEEeccCCChhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhchhhh
Q psy4458 241 MVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIHQRVA 302 (303)
Q Consensus 241 mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~w~~~i~~l~~~v~~~~~lI~ke~~~~~~~~ 302 (303)
||.+|+|+|+|||++|+|+|++++++++.+++|+.+|.+||+.|++++|+|+||+|||++++
T Consensus 383 mI~~g~i~akIDq~~giV~F~~~~~~~~~l~~W~~~i~~l~~~v~k~~~lI~kE~m~~~~~~ 444 (445)
T 4b4t_P 383 LVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIGHLITKEEIMHGLQA 444 (445)
T ss_dssp HHHHTSSCCEEETTTTEEEC------------------------------------------
T ss_pred HHHCCCEEEEEcCCCCEEEECCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999989999999999999999999999999999999999864
No 2
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-41 Score=321.19 Aligned_cols=273 Identities=13% Similarity=0.162 Sum_probs=199.8
Q ss_pred CccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHH
Q psy4458 3 EDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMI 82 (303)
Q Consensus 3 e~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~ 82 (303)
...||+.+|++++..+..+|.++ ++|+++++.++|++++.+||..++.+++|++... ..++ +|+++.+|+.|.|
T Consensus 142 ~~~Gd~~~A~~~~~~~~~~~~~~---~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~-~~~~--d~~~~~~lk~~~g 215 (429)
T 4b4t_R 142 AQIGDKDNAEKTLGKSLSKAIST---GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMI-EKGG--DWERRNRYKTYYG 215 (429)
T ss_dssp HHHCCCTTHHHHHHHHHHHHTCC---CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTCC--CTHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-hcCC--CHHHHHHHHHHHH
Confidence 46799999999999999987653 7999999999999999999999999999999888 4566 8999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHhCCCCchhhHhHHHhhhhhh----cCC---chHHHH
Q psy4458 83 ELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKL----LNE---IPLYKG 155 (303)
Q Consensus 83 ~~~~~~~~f~eaa~~y~e~~~t~~~~~~~~~~~~~L~~~v~~~iLs~~~~~r~~ll~~l~~~~~----~~~---~p~~~~ 155 (303)
+++.+.|+|.+||++|++++.|++..+ ......++.+.++|+++ +..|+++...+..+++ +.. ++.+..
T Consensus 216 l~~l~~r~f~~Aa~~f~e~~~t~~~~e-~~~~~~~~~y~~l~al~---~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~ 291 (429)
T 4b4t_R 216 IHCLAVRNFKEAAKLLVDSLATFTSIE-LTSYESIATYASVTGLF---TLERTDLKSKVIDSPELLSLISTTAALQSISS 291 (429)
T ss_dssp HGGGGTSCHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHH---TTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHhccCCccc-hhhHHHHHHHHHHHHHh---cCCHHHHHHHHhcCHHHHhhccCChhHHHHHH
Confidence 999999999999999999999998753 23344445555555554 4568888888877653 233 445566
Q ss_pred HHHHhcCCcccCc-hHHHHHHHHhhcccccccccchhHHhHHHHHHHHHHHHHHHHHHhhhceeeHHHHHHHhCCCHHHH
Q psy4458 156 LLQWFTNPELIKW-SGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEET 234 (303)
Q Consensus 156 L~~~f~~~~li~~-~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~i~ehNi~~isk~Y~~Itl~~la~ll~ls~~~v 234 (303)
++.+|+.+....+ ......+...|..++.+ ..|+..|.+++++||+..+.+||++|+|++||++||+|++++
T Consensus 292 l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l-------~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~ 364 (429)
T 4b4t_R 292 LTISLYASDYASYFPYLLETYANVLIPCKYL-------NRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFL 364 (429)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHSTTTTTCTTS-------TTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhhhccCHHH-------HHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHH
Confidence 7888777754332 22233344445555554 357999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCceEEEecCCCceEEeccCCChhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy4458 235 EEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLIN 292 (303)
Q Consensus 235 E~~l~~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~w~~~i~~l~~~v~~~~~lI~ 292 (303)
|+.|++||.+|+|+|+|||++|+|++.+|++++..++.|.++++.|++.+++.+++|.
T Consensus 365 E~~L~~lI~~g~l~akID~~~giv~~~~~d~~~~~y~~~i~~gd~Ll~riqkl~~~i~ 422 (429)
T 4b4t_R 365 DNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQGDGLLTKLQKYGAAVR 422 (429)
T ss_dssp HHHHHHHHHHTSSCEEEETTTTEEEECC------------------------------
T ss_pred HHHHHHHHHcCCeEEEEcCCCCEEEECCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999874
No 3
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=100.00 E-value=1.4e-32 Score=260.26 Aligned_cols=274 Identities=15% Similarity=0.137 Sum_probs=205.7
Q ss_pred CccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHH
Q psy4458 3 EDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMI 82 (303)
Q Consensus 3 e~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~ 82 (303)
.+.|++.+|.+++..+.-|--+.=++..-+|+++..+++|...+|+.+++.++.++....-.-.. ++.+.-.++.+-|
T Consensus 110 ~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~--~p~i~a~i~~~~G 187 (394)
T 3txn_A 110 FDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC--PPKVQGALDLQSG 187 (394)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC--CHHHHHHHHHHhh
Confidence 45799999999999887654332236799999999999999999999999999998765421113 5778889999999
Q ss_pred HHHH-HhhhHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHhCCCCchhhHhHHHh-hhhhhcCCchHHHHHHHHh
Q psy4458 83 ELDQ-HEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNVVLYLMLAPYDNEQSDLTHRV-LEDKLLNEIPLYKGLLQWF 160 (303)
Q Consensus 83 ~~~~-~~~~f~eaa~~y~e~~~t~~~~~~~~~~~~~L~~~v~~~iLs~~~~~r~~ll~~l-~~~~~~~~~p~~~~L~~~f 160 (303)
.++. ..|||.+|+.+|++++.+|+.. +...+..+++|+++|++++..-++...++..- ......++++.+..|+++|
T Consensus 188 i~~l~~~rdyk~A~~~F~eaf~~f~~~-~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~ 266 (394)
T 3txn_A 188 ILHAADERDFKTAFSYFYEAFEGFDSV-DSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEAS 266 (394)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHH
Confidence 9999 8999999999999999888754 44567889999999999997643433332211 1100123466789999999
Q ss_pred cCCcccCchHHHHHHHHhhcccccccccchhHHhHHHHHHHHHHHHHHHHHHhhhceeeHHHHHHHhCCCHHHHHHHHHh
Q psy4458 161 TNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSS 240 (303)
Q Consensus 161 ~~~~li~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~i~ehNi~~isk~Y~~Itl~~la~ll~ls~~~vE~~l~~ 240 (303)
.++++..|...+..|.+.|..++.+ ..|+..|++++++||++.+++||++|+|++||+.||+|++++|..|++
T Consensus 267 ~~~dl~~f~~iL~~~~~~l~~D~~l-------~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~~ 339 (394)
T 3txn_A 267 HKRSLADFQAALKEYKKELAEDVIV-------QAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQ 339 (394)
T ss_dssp HTTCHHHHHHHHHHSTTTTTTSHHH-------HHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhcChHH-------HHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHHHH
Confidence 9999887777666666666666544 367899999999999999999999999999999999999999999999
Q ss_pred hhhcCceEEEecCCCceEEeccCCC-------hhHHHHHHHHHHHHHHHHHHH
Q psy4458 241 MVVSKTITAKIDRPAGIINFARNKD-------PGEILNEWSASLNELMKLVNN 286 (303)
Q Consensus 241 mI~~~~l~akIDq~~giV~f~~~~~-------~~~~l~~w~~~i~~l~~~v~~ 286 (303)
||.+|+|+|+|||++|+|+|.++++ ..+.+++|+..|+.|++...+
T Consensus 340 lI~dg~I~a~IDq~~giv~~~~~~~r~~~y~~ale~l~~ls~vVd~L~~~~~~ 392 (394)
T 3txn_A 340 MILDKKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVVDTLYQKAKK 392 (394)
T ss_dssp HHHTTSSCEEEETTTTEEEECCC------------------------------
T ss_pred HHHCCCeeEEEcCCCCEEEECCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999988743 346789999999988876554
No 4
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.8e-32 Score=258.23 Aligned_cols=285 Identities=13% Similarity=0.169 Sum_probs=212.7
Q ss_pred CCccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHH
Q psy4458 2 KEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLM 81 (303)
Q Consensus 2 ~e~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~ 81 (303)
++..|++.+|..+++++..++.+.++...++++++.++|+|+..|||.+|..+.+++........+ ++..+..++.+.
T Consensus 145 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~ 222 (434)
T 4b4t_Q 145 HYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC--PTQTVAELDLMS 222 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHH
T ss_pred HHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC--chHHHHHHHHHH
Confidence 456799999999999999999999999999999999999999999999999999999876644444 577888999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHcCCCCCCC---hHHHHHHHHHHHHHHHhCCCCchhhHhHHHhhh--hhhcCCchHHHHH
Q psy4458 82 IELDQHEGSYLATCKHYRAILTTPCIQSD---PVQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLE--DKLLNEIPLYKGL 156 (303)
Q Consensus 82 ~~~~~~~~~f~eaa~~y~e~~~t~~~~~~---~~~~~~~L~~~v~~~iLs~~~~~r~~ll~~l~~--~~~~~~~p~~~~L 156 (303)
+.++.+.++|.+|+++|.+++.++...++ ...+..++.++++|.++++.......++..... ....+.+|.+..+
T Consensus 223 g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 302 (434)
T 4b4t_Q 223 GILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAV 302 (434)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHH
Confidence 99999999999999999999987644322 345667788899999988876555544433221 1233567889999
Q ss_pred HHHhcCCcccCchHHHHHHHHhhcccccccccchhHHhHHHHHHHHHHHHHHHHHHhhhceeeHHHHHHHhCCCHHHHHH
Q psy4458 157 LQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEE 236 (303)
Q Consensus 157 ~~~f~~~~li~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~i~ehNi~~isk~Y~~Itl~~la~ll~ls~~~vE~ 236 (303)
..+|.++++..|......+...+..++.+ ..++..+.+++++||++.+++||++|++++||++||+|++++|.
T Consensus 303 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~ 375 (434)
T 4b4t_Q 303 AEAYNNRSLLDFNTALKQYEKELMGDELT-------RSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEG 375 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHTHHHHTCSHHH-------HHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHcccHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHHHH
Confidence 99999998888877667776666555543 45789999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCceEEEecCCCceEEeccCCChhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Q psy4458 237 FLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIH 298 (303)
Q Consensus 237 ~l~~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~w~~~i~~l~~~v~~~~~lI~ke~~~~ 298 (303)
.|++||.+|+|+|+|||++|+|+|.++..+.+.+++|.+.+.++.+.|+. +++|..|+|
T Consensus 376 ~l~~lI~~~~i~a~id~~~g~v~~~~~~~~~~~~~~~l~~~~~l~~~vd~---L~~ka~~ly 434 (434)
T 4b4t_Q 376 KLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVGQLNKVVDQ---LFEKASVLY 434 (434)
T ss_dssp HHHHHHHHTSSCCEEETTTTEEECC-------------------------------------
T ss_pred HHHHHHhCCCcceecccccCeEeeCCCcchhHHHHHHHHHHHHHHHHHHH---HHHHHHHhC
Confidence 99999999999999999999999988877778899999888888777765 689999887
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.2e-24 Score=202.40 Aligned_cols=277 Identities=12% Similarity=0.145 Sum_probs=179.4
Q ss_pred ccCCHHHHHHHHhccccccc---c--------CCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHH
Q psy4458 4 DEGDVTEAANIIQELQVETY---G--------SMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 72 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~---~--------~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e 72 (303)
...|..+|...|.++..... + .-.....+.+.+.++|++|..+|...|+.+++++...+...++. +..
T Consensus 88 ~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~-~~~ 166 (393)
T 4b4t_O 88 DSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI-PLR 166 (393)
T ss_dssp HTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS-SSH
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc-cHH
Confidence 45688999999987743221 1 11234678889999999999999999999999999887433331 234
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCC--CChHHHHHHHHHHHHHHHhCCCCchhhHhHHHhhhhh--hcC
Q psy4458 73 LKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQ--SDPVQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDK--LLN 148 (303)
Q Consensus 73 ~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t~~~~--~~~~~~~~~L~~~v~~~iLs~~~~~r~~ll~~l~~~~--~~~ 148 (303)
...+||.+.+.|+...++|.++++.....+.+.+.. .++.++......+++|++++|......+++.....+. ..+
T Consensus 167 v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~ 246 (393)
T 4b4t_O 167 ITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDS 246 (393)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSS
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCC
Confidence 556888888999999999999888777776544321 1345556666789999999999999998887665432 224
Q ss_pred CchHHHHHHHHhcCCcccCchHHHHHHHHhhcccccccccchhHHhHHHHHHHHHHHHHH--HHHHhhhceeeHHHHHHH
Q psy4458 149 EIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNI--RVMAKYYTRITLQRMCDL 226 (303)
Q Consensus 149 ~~p~~~~L~~~f~~~~li~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~i~ehNi--~~isk~Y~~Itl~~la~l 226 (303)
+.+.+..|++.|..+++.. |...+++|.-. .+.-..+...+.+.++...+ ++.+++|++|+++.||+.
T Consensus 247 ~~~~l~~Ll~~f~~g~~~~-------f~~~~~~~~~~---~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~ 316 (393)
T 4b4t_O 247 NYDWLFQLLNALTVGDFDK-------FDSLIKVQISK---IPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKA 316 (393)
T ss_dssp STTHHHHHHHHHHHTCHHH-------HHHHCCHHHHH---SHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHH
T ss_pred chHHHHHHHHHHhcCCHHH-------HHHHHHHhhhh---CcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHH
Confidence 5666889999999997633 44433333211 00001223344444444444 445578999999999999
Q ss_pred hCCCHHHHHHHHHhhhhcCceEEEecCCCceEEeccCCC----------hhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4458 227 LGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKD----------PGEILNEWSASLNELMKLVNNTTHLI 291 (303)
Q Consensus 227 l~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~~~~----------~~~~l~~w~~~i~~l~~~v~~~~~lI 291 (303)
+|+|++++|..+++||..|+|.|+|||++|+|++.+..+ ..+.|..|..++.++++.|++.+.-|
T Consensus 317 l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~~L~~W~~~v~~l~~~ve~~~~~i 391 (393)
T 4b4t_O 317 THLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWNDQVEKLGKKMEARGQSI 391 (393)
T ss_dssp HTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC-----------------------------------------
T ss_pred hCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999987533 24679999999999999998876543
No 6
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=4.6e-21 Score=185.35 Aligned_cols=244 Identities=16% Similarity=0.190 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC-CCCC
Q psy4458 30 EKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT-PCIQ 108 (303)
Q Consensus 30 ~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t-~~~~ 108 (303)
-..-++-.++|.||..++|..|..+++|+. ++.... ......+|+.|.|+++..+++|.+|..++..++.. +...
T Consensus 229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~--sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 229 TKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDV--SSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred hhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccC--CHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 445567789999999999999999999996 222222 22345899999999999999999999999999853 3221
Q ss_pred CChHHHHHHHHHHHHHHHhCCCCchhhHhHHHhhhhhhcCCchHHHHHHHHhcCCcccCchHHHHHHHHhhccccccccc
Q psy4458 109 SDPVQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQS 188 (303)
Q Consensus 109 ~~~~~~~~~L~~~v~~~iLs~~~~~r~~ll~~l~~~~~~~~~p~~~~L~~~f~~~~li~~~~~~~~~~~~L~~~~~~~~~ 188 (303)
.....+..+++++|++.+|++..|+|+.+.....+ +.+..|..|.++|..+++-.|...+..++..+..+..+
T Consensus 305 ~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~----~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty--- 377 (523)
T 4b4t_S 305 KSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQ----KSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTY--- 377 (523)
T ss_dssp SCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCH----HHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCT---
T ss_pred hhhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChh---
Confidence 12235678899999999999988888866543333 12566888999999998865655555555544444432
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhhhceeeHHHHHHHhCCC-HHHHHHHHHhhhhcCceEEEecCCCceEEeccCCC--
Q psy4458 189 TEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLP-IEETEEFLSSMVVSKTITAKIDRPAGIINFARNKD-- 265 (303)
Q Consensus 189 ~~~~~~~~~~l~~~i~ehNi~~isk~Y~~Itl~~la~ll~ls-~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~~~~-- 265 (303)
.-...++.+++.++|+.+++.|++|+++.+|..++++ ++++|.++++||.+|.|.|+||+.+|+|.|....+
T Consensus 378 -----~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~ske~~d~y 452 (523)
T 4b4t_S 378 -----QLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTELLNIY 452 (523)
T ss_dssp -----HHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTTCCEECCSSSCC-
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEEecCCCEEEeCcccccc
Confidence 1246788999999999999999999999999999995 78899999999999999999999999999976533
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHh
Q psy4458 266 -PGEILNEWSASLNELMKLVNNTTH 289 (303)
Q Consensus 266 -~~~~l~~w~~~i~~l~~~v~~~~~ 289 (303)
..+....|.++|..+++.-+....
T Consensus 453 st~ep~~af~~RI~~cl~L~ne~vk 477 (523)
T 4b4t_S 453 DSEDPQQVFDERIKFANQLHDEYLV 477 (523)
T ss_dssp -------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678899999876666555433
No 7
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.85 E-value=4.1e-22 Score=148.31 Aligned_cols=73 Identities=27% Similarity=0.487 Sum_probs=69.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEeccCCC
Q psy4458 193 QKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKD 265 (303)
Q Consensus 193 ~~~~~~l~~~i~ehNi~~isk~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~~~~ 265 (303)
.++|..|+++++|||++++++||++|+|++||++||+|++++|..+++||.+|+|+|+|||++|+|+|+++.+
T Consensus 6 ~~~~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~ 78 (84)
T 1ufm_A 6 SGGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREA 78 (84)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred cccHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCccc
Confidence 3468899999999999999999999999999999999999999999999999999999999999999988654
No 8
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.55 E-value=9.8e-14 Score=120.03 Aligned_cols=172 Identities=10% Similarity=0.096 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHhCCCCchhhHhHHHhhhhhhcCCch
Q psy4458 72 ELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIP 151 (303)
Q Consensus 72 e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t~~~~~~~~~~~~~L~~~v~~~iLs~~~~~r~~ll~~l~~~~~~~~~p 151 (303)
...++|.-|.|+++..+++|.+|...+.+++....- .....+..+|+++|.+.+|.+.-|.+.-+ .+ +.. .
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~-~~~~~k~~IL~yLIp~~Ll~G~iP~~~ll-~~----~~~---~ 81 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR-SSQKNKRMILIYLLPVKMLLGHMPTVELL-KK----YHL---M 81 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHHTTCEECHHHH-HH----TTC---G
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH-hHHHHHHHHHHHHHHHHHHcCCCCCHHHh-hh----Cch---h
Confidence 456889999999999999999999999999864322 13456778899999999999875555422 21 222 2
Q ss_pred HHHHHHHHhcCCcccCchHHHHHHHHhhcccccccccchhHHhHHHHHHHHHHHHHHHHH----H--hhhceeeHHHHHH
Q psy4458 152 LYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVM----A--KYYTRITLQRMCD 225 (303)
Q Consensus 152 ~~~~L~~~f~~~~li~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~i~ehNi~~i----s--k~Y~~Itl~~la~ 225 (303)
.|..|.+++..+++..|...++.++..+..+.++ .+..++....++.. . ..|++|+++.++.
T Consensus 82 ~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~------------lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~ 149 (203)
T 3t5x_A 82 QFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIF------------LILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLV 149 (203)
T ss_dssp GGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCH------------HHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChH------------HHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 4789999999999866666666655544444432 12233333333332 2 2699999999999
Q ss_pred HhC------CCHHHHHHHHHhhhhcCceEEEecCCCceEEeccCC
Q psy4458 226 LLG------LPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNK 264 (303)
Q Consensus 226 ll~------ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~~~ 264 (303)
.++ ++++|+|-++++||.+|.|.|+||+.+|++.+.+.+
T Consensus 150 ~l~~~~~~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~ 194 (203)
T 3t5x_A 150 ALKFMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQN 194 (203)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSC
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHcCceEEEEcccccEEEECCCC
Confidence 995 489999999999999999999999999999887653
No 9
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.46 E-value=3e-12 Score=122.99 Aligned_cols=246 Identities=9% Similarity=0.047 Sum_probs=172.1
Q ss_pred CCHHHHHHHHhcccc--------ccccCCchHHHHHHH--HHHHHHHHhhcchhHHHHHHHHhhhhcc--C-CCCcchHH
Q psy4458 6 GDVTEAANIIQELQV--------ETYGSMEKKEKVTLI--LEQMRLCLAKKDYIRTQIISKKINTKFF--D-DEKDDVQE 72 (303)
Q Consensus 6 ~~~~~Aa~~L~~i~v--------et~~~~~~~~k~~~~--L~~~rL~L~~~D~~~a~~~~~ki~~~~~--~-~~~~~~~e 72 (303)
..+++||+++..+=- ....+.+.+.+.-++ -...++|+..+....|+.+++-++...+ . +.- ...
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~--p~~ 217 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEY--QLD 217 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGS--CHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhC--Ccc
Confidence 356788888876510 111122334444443 3567999999999999999998876532 1 112 345
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CCCCC---ChHHHHHHHHHHHHHHHhCCCCchhhHhHHHhhhhhhc
Q psy4458 73 LKLKYYRLMIELDQHEGSYLATCKHYRAILTT--PCIQS---DPVQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLL 147 (303)
Q Consensus 73 ~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t--~~~~~---~~~~~~~~L~~~v~~~iLs~~~~~r~~ll~~l~~~~~~ 147 (303)
..++|.-|.|+++..+.+|.+|..++.+++.. +.... ....+..+|+++|.+.+|.+.-|.+.. +.+.+ .
T Consensus 218 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~l-l~k~~----~ 292 (455)
T 3t5v_B 218 QQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGP-LRPFL----S 292 (455)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHH-HGGGS----C
T ss_pred ceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHH-Hcccc----h
Confidence 67899999999999999999999999999864 43210 023456789999999999987777763 23222 1
Q ss_pred CCch-HHHHHHHHhcCCcccCchHHHHHHHHhhccccc-ccccchhHHhHH-HHHHHHHHHHHHHHHHhhh--ceeeHHH
Q psy4458 148 NEIP-LYKGLLQWFTNPELIKWSGLRQLYEEELFKTSV-FNQSTEEGQKCF-KMLKHRVVEHNIRVMAKYY--TRITLQR 222 (303)
Q Consensus 148 ~~~p-~~~~L~~~f~~~~li~~~~~~~~~~~~L~~~~~-~~~~~~~~~~~~-~~l~~~i~ehNi~~isk~Y--~~Itl~~ 222 (303)
+.+. .|..|.++...+++..|...++.++..+..+.+ +. .. ++. ....++++..-+...+.+| ++|+++.
T Consensus 293 ~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~-Ll----erLr~~v~RnLirkv~~~~~~~~~~srI~l~~ 367 (455)
T 3t5v_B 293 QETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIV-LL----EKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSL 367 (455)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHH-HH----HHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHH-HH----HHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHH
Confidence 2333 388899999999997787777777776666655 31 00 001 1111222222222245668 8999999
Q ss_pred HHHHhC---------------------CCHHHHHHHHHhhhhcCceEEEecCCCceEEeccC
Q psy4458 223 MCDLLG---------------------LPIEETEEFLSSMVVSKTITAKIDRPAGIINFARN 263 (303)
Q Consensus 223 la~ll~---------------------ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~~ 263 (303)
++..++ ++++++|-+++.+|.+|.|.|+||+.+|++.+.+.
T Consensus 368 i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 368 IERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp HHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCC
T ss_pred HHHHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCC
Confidence 999997 58999999999999999999999999999999876
No 10
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=98.52 E-value=1.5e-06 Score=72.50 Aligned_cols=131 Identities=11% Similarity=0.113 Sum_probs=84.2
Q ss_pred HHHHHHHHHhCCCCchhhHhHHHh-hhhhhcCCchHHHHHHHHhcCCcccCchHHHHHHHHhhcccccccccchhHHhHH
Q psy4458 118 LQNVVLYLMLAPYDNEQSDLTHRV-LEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCF 196 (303)
Q Consensus 118 L~~~v~~~iLs~~~~~r~~ll~~l-~~~~~~~~~p~~~~L~~~f~~~~li~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 196 (303)
...+++.++.+|.--.=.+++... .+.=+....+.+..|++.|..+++..| ...-..+|-+.
T Consensus 26 a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y-------~~~~~~~p~L~---------- 88 (169)
T 3chm_A 26 LGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDY-------KCNATRLPHLS---------- 88 (169)
T ss_dssp HHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHHHH-------HHHGGGSCCCC----------
T ss_pred HHHHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCHHHH-------HHhHHhCcchH----------
Confidence 456888888888432223333211 010011224457889999999975333 22222344331
Q ss_pred HHHHHHHHHHHHHHHHhhhceeeHHHHHHHhCCC-HHHHHHHHH-hhhhcCceEEEecCCCceEEeccCCC
Q psy4458 197 KMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLP-IEETEEFLS-SMVVSKTITAKIDRPAGIINFARNKD 265 (303)
Q Consensus 197 ~~l~~~i~ehNi~~isk~Y~~Itl~~la~ll~ls-~~~vE~~l~-~mI~~~~l~akIDq~~giV~f~~~~~ 265 (303)
..+...++.--+..++.--+.|+++.|++.++++ ++++|..+. ++|..|-|.|||||+++.|+..|..+
T Consensus 89 ~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~ 159 (169)
T 3chm_A 89 PDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAG 159 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecC
Confidence 1122222222222233237999999999999999 999999999 99999999999999999998887544
No 11
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=98.30 E-value=8.9e-05 Score=64.75 Aligned_cols=203 Identities=17% Similarity=0.195 Sum_probs=121.2
Q ss_pred HHHHHHHHhhcchhHHHHHHHHhhhh-----ccCCCCcchHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHH----cC
Q psy4458 36 LEQMRLCLAKKDYIRTQIISKKINTK-----FFDDEKDDVQELKL--KYYRLMIELDQHEGSYLATCKHYRAIL----TT 104 (303)
Q Consensus 36 L~~~rL~L~~~D~~~a~~~~~ki~~~-----~~~~~~~~~~e~k~--~y~~~~~~~~~~~~~f~eaa~~y~e~~----~t 104 (303)
|...+=.++.+||..|...+.+++.. .+..... ..++.+ ..|..-+++....+| .+++..|...+ ..
T Consensus 11 l~~L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~-~~~~~~ar~vyE~~a~~al~~~D-~~~F~~~~~qLk~~Y~~ 88 (229)
T 4b0z_A 11 LNHLADLYDRKDWNACKKELLKLKVELAKQNLFVPTSD-KEKASFARNVFEYGVLVSIQTCD-IESFARYASQVIPFYHD 88 (229)
T ss_dssp SHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSC-HHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCC-hHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHc
Confidence 34455567899999999999998632 1112221 334433 334444565555544 45554444332 22
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhCCCCchhhHhHHHhhhhhhcCCchH---HHHHHHHhcCCcccCchHHHHHHHHhhcc
Q psy4458 105 PCIQSDPVQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPL---YKGLLQWFTNPELIKWSGLRQLYEEELFK 181 (303)
Q Consensus 105 ~~~~~~~~~~~~~L~~~v~~~iLs~~~~~r~~ll~~l~~~~~~~~~p~---~~~L~~~f~~~~li~~~~~~~~~~~~L~~ 181 (303)
... +.......+.+.++|.++.+-.++.+..+..+.....+..-|. .-.|.+++..++ |..+... ++.
T Consensus 89 ~~~--~s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~Gn---Y~kff~l----~~~ 159 (229)
T 4b0z_A 89 SLV--PSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGA---FDKVASM----IRS 159 (229)
T ss_dssp CCC--CCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTC---HHHHHHH----HHT
T ss_pred cCC--CCccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCC---HHHHHHH----Hhc
Confidence 211 2233456677888888888766677766666543221222233 335778888775 4333333 333
Q ss_pred cccccccchhHHhHHHHHHHHHHHHHHHHHHhhhceeeHHHHHHHhCC-CHHHHHHHHHhhhhcCceEEEecCCCceEEe
Q psy4458 182 TSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGL-PIEETEEFLSSMVVSKTITAKIDRPAGIINF 260 (303)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~~i~ehNi~~isk~Y~~Itl~~la~ll~l-s~~~vE~~l~~mI~~~~l~akIDq~~giV~f 260 (303)
.|.- ...--...+..+++..-++.+.+.|.+|+++.+++.||+ |+++++..+.+. | =.|+ +|.|.|
T Consensus 160 ~p~~-----~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~---g---w~i~--dg~i~F 226 (229)
T 4b0z_A 160 CNFP-----EFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEER---G---WDIR--DGVIYF 226 (229)
T ss_dssp CCCG-----GGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHH---T---CEEE--TTEEEC
T ss_pred Cccc-----hHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHc---C---CEEe--CCEEec
Confidence 3321 001123567778888888889999999999999999999 578888888763 2 1343 778888
Q ss_pred cc
Q psy4458 261 AR 262 (303)
Q Consensus 261 ~~ 262 (303)
.+
T Consensus 227 ~~ 228 (229)
T 4b0z_A 227 PK 228 (229)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 12
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.72 E-value=0.25 Score=38.71 Aligned_cols=89 Identities=16% Similarity=0.046 Sum_probs=68.3
Q ss_pred CCCccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHH
Q psy4458 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRL 80 (303)
Q Consensus 1 i~e~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~ 80 (303)
++.+.|++++|...++..-- ...+.-...+.++++++..|+|..|....+++-.... + + ...+..
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--~---~----~~a~~~ 70 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--R---D----PKAHRF 70 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---C----HHHHHH
T ss_pred HHHHcChHHHHHHHHHHhcc------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C---C----HHHHHH
Confidence 35677899999888876432 3335555678899999999999999999999876542 1 2 234556
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 81 MIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 81 ~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
++..+...++|-+|-.+|..++..
T Consensus 71 lg~~~~~~~~~~~A~~~~~~al~~ 94 (150)
T 4ga2_A 71 LGLLYELEENTDKAVECYRRSVEL 94 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHh
Confidence 888999999999999999999764
No 13
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.66 E-value=0.11 Score=39.51 Aligned_cols=96 Identities=8% Similarity=-0.111 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHH
Q psy4458 5 EGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIEL 84 (303)
Q Consensus 5 ~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~ 84 (303)
.|++++|...+...---....-+.......+...+.++...|++..|..+.+++-...... + +.......+..++..
T Consensus 22 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~--~~~~~~~~~~~l~~~ 98 (164)
T 3ro3_A 22 LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-K--DRAVEAQSCYSLGNT 98 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T--CHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-C--CcHHHHHHHHHHHHH
Confidence 4677777776655321111112334455677777888888888888888887776655322 2 334445556667777
Q ss_pred HHHhhhHHHHHHHHHHHHc
Q psy4458 85 DQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 85 ~~~~~~f~eaa~~y~e~~~ 103 (303)
+...++|.+|-.+|.++..
T Consensus 99 ~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 99 YTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 7788888888777777654
No 14
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.27 E-value=0.66 Score=41.71 Aligned_cols=100 Identities=10% Similarity=0.069 Sum_probs=76.6
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...---.-..-+.....+.+...+.++...|++..|..+..++-......++ ........+...|.
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA--YNIRLLQCHSLFAT 192 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST--THHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHH
Confidence 3589999988887653111111234568899999999999999999999999999887744332 24555677778999
Q ss_pred HHHHhhhHHHHHHHHHHHHcCC
Q psy4458 84 LDQHEGSYLATCKHYRAILTTP 105 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t~ 105 (303)
.+...++|-+|-.+|..++...
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~ 214 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMA 214 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHH
Confidence 9999999999999999988653
No 15
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.25 E-value=0.14 Score=38.84 Aligned_cols=97 Identities=8% Similarity=-0.119 Sum_probs=72.0
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...---.-..-+.......+...+.++...+++..|..+.+++-...... + +.......+..++.
T Consensus 61 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~--~~~~~~~~~~~la~ 137 (164)
T 3ro3_A 61 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-K--DRIGEGRACWSLGN 137 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T--CHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc-c--chHhHHHHHHHHHH
Confidence 46888888888776421111122344567788899999999999999999999988766332 3 34445566777899
Q ss_pred HHHHhhhHHHHHHHHHHHHc
Q psy4458 84 LDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~ 103 (303)
.+...++|.+|..+|.++..
T Consensus 138 ~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 138 AYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 99999999999999988864
No 16
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.08 E-value=0.69 Score=41.63 Aligned_cols=100 Identities=12% Similarity=0.005 Sum_probs=75.6
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...---.-..-+.....+++..++.++...|++..|..+..++-......++ ........+..+|.
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL--YSIRTIQSLFVIAG 190 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT--CHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC--chhhHHHHHHHHHH
Confidence 3588899988876542111112245678899999999999999999999999999877743332 23344566778899
Q ss_pred HHHHhhhHHHHHHHHHHHHcCC
Q psy4458 84 LDQHEGSYLATCKHYRAILTTP 105 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t~ 105 (303)
.+...++|-+|-.+|..++...
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~ 212 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELA 212 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHH
Confidence 9999999999999999987643
No 17
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=94.92 E-value=0.25 Score=36.14 Aligned_cols=93 Identities=16% Similarity=0.124 Sum_probs=70.8
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...---. . .-...+...+.+++..|++..|..+..++-.......+ ++......+..++.
T Consensus 16 ~~~~~~~A~~~~~~a~~~~-~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~ 87 (131)
T 1elr_A 16 KKKDFDTALKHYDKAKELD-P-----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE--DYRQIAKAYARIGN 87 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-C-----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch--hHHHHHHHHHHHHH
Confidence 4689999999887753211 1 11467788899999999999999999998776543333 45555666677899
Q ss_pred HHHHhhhHHHHHHHHHHHHcC
Q psy4458 84 LDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+...++|.+|-..|..+...
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999988764
No 18
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=94.77 E-value=1.2 Score=36.65 Aligned_cols=92 Identities=12% Similarity=0.023 Sum_probs=71.9
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...--.. ...+.+...+.++...|++..|..+..++-........ ++......+..++.
T Consensus 17 ~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~ 87 (258)
T 3uq3_A 17 KARQFDEAIEHYNKAWELH-------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA--DYKVISKSFARIGN 87 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHS-------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhh-------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccccc--chHHHHHHHHHHHH
Confidence 4689999999887763221 12467889999999999999999999998776533332 45555677778999
Q ss_pred HHHHhhhHHHHHHHHHHHHcC
Q psy4458 84 LDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+...++|.+|-..|..+...
T Consensus 88 ~~~~~~~~~~A~~~~~~a~~~ 108 (258)
T 3uq3_A 88 AYHKLGDLKKTIEYYQKSLTE 108 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhc
Confidence 999999999999999998763
No 19
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=94.45 E-value=0.52 Score=37.60 Aligned_cols=96 Identities=9% Similarity=-0.041 Sum_probs=59.9
Q ss_pred cCCHHHHHHHHhccccccccCC-chHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 5 EGDVTEAANIIQELQVETYGSM-EKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 5 ~~~~~~Aa~~L~~i~vet~~~~-~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
.|++++|...+...-- .+... ........+...+.++...|++..|..+..++-......++ +.......+...+.
T Consensus 39 ~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~lg~ 115 (203)
T 3gw4_A 39 MDRFDEARASFQALQQ-QAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE--DPLAASANAYEVAT 115 (203)
T ss_dssp TTCHHHHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc--cHHHHHHHHHHHHH
Confidence 4666666666554321 11111 33445666777778888888888888888877766532221 23344455666778
Q ss_pred HHHHhhhHHHHHHHHHHHHc
Q psy4458 84 LDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~ 103 (303)
.+...++|-+|-.+|.+++.
T Consensus 116 ~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 116 VALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 88888888888888877764
No 20
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=94.20 E-value=0.16 Score=35.55 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=45.5
Q ss_pred HhhhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEecc
Q psy4458 212 AKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 262 (303)
Q Consensus 212 sk~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~ 262 (303)
.+-=+.+.++.||..||++.+++-.-|-++..+|+|.|.||-....|...+
T Consensus 16 Ik~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~ 66 (72)
T 1wi9_A 16 IKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITP 66 (72)
T ss_dssp HHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCC
T ss_pred HHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecH
Confidence 344678999999999999999999999999999999999999888777654
No 21
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.11 E-value=1.3 Score=38.38 Aligned_cols=169 Identities=12% Similarity=0.136 Sum_probs=88.9
Q ss_pred cCCHHHHHHHHhccccccccCC-chHHHHHHHHHHHHHHHhh-cchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHH
Q psy4458 5 EGDVTEAANIIQELQVETYGSM-EKKEKVTLILEQMRLCLAK-KDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMI 82 (303)
Q Consensus 5 ~~~~~~Aa~~L~~i~vet~~~~-~~~~k~~~~L~~~rL~L~~-~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~ 82 (303)
.|++++|...+...- +-+..+ ....-...+..++.++... |++..|..+.+++-...... + +.......+.-.+
T Consensus 90 ~g~~~~A~~~~~~Al-~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~-~--~~~~~~~~~~~lg 165 (292)
T 1qqe_A 90 GGNSVNAVDSLENAI-QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD-Q--SVALSNKCFIKCA 165 (292)
T ss_dssp TTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-T--CHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC-C--ChHHHHHHHHHHH
Confidence 466666666554321 111111 1222355677888888886 99999999999887766332 2 2223344556678
Q ss_pred HHHHHhhhHHHHHHHHHHHHcCCCCCCCh-HHHHHHHHHHHHHHH-hCCCCchhhHhHHHhhhhhhcC---CchHHHHHH
Q psy4458 83 ELDQHEGSYLATCKHYRAILTTPCIQSDP-VQRHAVLQNVVLYLM-LAPYDNEQSDLTHRVLEDKLLN---EIPLYKGLL 157 (303)
Q Consensus 83 ~~~~~~~~f~eaa~~y~e~~~t~~~~~~~-~~~~~~L~~~v~~~i-Ls~~~~~r~~ll~~l~~~~~~~---~~p~~~~L~ 157 (303)
..+...++|-+|-.+|..+.....-.... .....++..+..|.. +..+..-...+-..+.-+|... +...+..|.
T Consensus 166 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~ 245 (292)
T 1qqe_A 166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLI 245 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 99999999999999999998654221110 011122333333333 2222222222222222244322 222355667
Q ss_pred HHhcCCcccCchHHHHHHHH
Q psy4458 158 QWFTNPELIKWSGLRQLYEE 177 (303)
Q Consensus 158 ~~f~~~~li~~~~~~~~~~~ 177 (303)
..+...+.-.|.+....|..
T Consensus 246 ~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 246 DAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp HHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHhcc
Confidence 77765655556555555544
No 22
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=93.90 E-value=0.8 Score=34.60 Aligned_cols=92 Identities=10% Similarity=0.071 Sum_probs=69.2
Q ss_pred ccCCHHHHHHHHhcc-ccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQEL-QVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMI 82 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i-~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~ 82 (303)
..|++++|...+... .+.. .-...+...+.+++..|+|..|....+++-....+... .+...-.-+..+|
T Consensus 20 ~~~~~~~A~~~y~~Al~~~p-------~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~~~lg 90 (127)
T 4gcn_A 20 KQKDFEKAHVHYDKAIELDP-------SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA--DYKLIAKAMSRAG 90 (127)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-------CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch--hhHHHHHHHHHHH
Confidence 468999999888653 3221 12467788999999999999999999988765433333 4555555666789
Q ss_pred HHHHHhhhHHHHHHHHHHHHcC
Q psy4458 83 ELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 83 ~~~~~~~~f~eaa~~y~e~~~t 104 (303)
..+...++|.+|-.+|..++..
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999988753
No 23
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=93.67 E-value=0.43 Score=42.43 Aligned_cols=97 Identities=8% Similarity=-0.111 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHH
Q psy4458 5 EGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIEL 84 (303)
Q Consensus 5 ~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~ 84 (303)
.|++++|...+...---....-+.......+...+.+++..|++..|..+.+++-...... + +.......+..++..
T Consensus 200 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~--~~~~~~~~~~~la~~ 276 (406)
T 3sf4_A 200 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-K--DRAVEAQSCYSLGNT 276 (406)
T ss_dssp HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T--CHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC-c--CchHHHHHHHHHHHH
Confidence 4566666655554321111122334555666666666666667776666666665554322 2 233445555556666
Q ss_pred HHHhhhHHHHHHHHHHHHcC
Q psy4458 85 DQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 85 ~~~~~~f~eaa~~y~e~~~t 104 (303)
+...++|-+|-..|.++...
T Consensus 277 ~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 277 YTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHH
Confidence 66666666666666665543
No 24
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.52 E-value=1 Score=39.84 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHhhhceeeHHHHHHHhCC-CHHHHHHHHHhhhhcCceEEEecCCCceEEeccC
Q psy4458 197 KMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGL-PIEETEEFLSSMVVSKTITAKIDRPAGIINFARN 263 (303)
Q Consensus 197 ~~l~~~i~ehNi~~isk~Y~~Itl~~la~ll~l-s~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~~ 263 (303)
..+..+++..=+..+.+.|.+|+++.+++.|++ +++++...+.+ ... .+ .+|.|.|...
T Consensus 179 d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~~~----~gW--~~--~~~~v~F~~~ 238 (274)
T 4b4t_T 179 DILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALE----RNW--PI--VNSKVYFNNQ 238 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHHHH----TTC--CC--CSSCCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHHHH----cCC--EE--eCCEeEECCc
Confidence 556677888888889999999999999999999 45666655544 221 23 2566777654
No 25
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=93.48 E-value=0.59 Score=40.57 Aligned_cols=98 Identities=6% Similarity=-0.027 Sum_probs=68.0
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...--......+.......+..++.++...|+|..|..+.+++-.......+ +.......+...|.
T Consensus 127 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~--~~~~~~~~~~nlg~ 204 (293)
T 2qfc_A 127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--NEEFDVKVRYNHAK 204 (293)
T ss_dssp TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc--cccchHHHHHhHHH
Confidence 3567888877765431111112233345778888999999999999999999998755422223 34444456667889
Q ss_pred HHHHhhhHHHHHHHHHHHHc
Q psy4458 84 LDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~ 103 (303)
.+...++|-+|-.+|..+..
T Consensus 205 ~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 205 ALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999988864
No 26
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=93.35 E-value=0.66 Score=40.27 Aligned_cols=96 Identities=14% Similarity=0.007 Sum_probs=66.9
Q ss_pred cCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHH
Q psy4458 5 EGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIEL 84 (303)
Q Consensus 5 ~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~ 84 (303)
.|++++|...+..+--.....-.....+.++..++-+++..+++..|..+.+++-..... .+ ++......+...|..
T Consensus 88 ~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-~~--~~~~~~~~~~~lg~~ 164 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-GI--DVYQNLYIENAIANI 164 (293)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC-CS--CTTHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc-cc--cHHHHHHHHHHHHHH
Confidence 588888888887764322111111233566666788888888999999999888775433 22 344455667778888
Q ss_pred HHHhhhHHHHHHHHHHHHc
Q psy4458 85 DQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 85 ~~~~~~f~eaa~~y~e~~~ 103 (303)
+...++|-+|-.+|..++.
T Consensus 165 y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 165 YAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8999999999999988874
No 27
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.29 E-value=0.25 Score=44.94 Aligned_cols=71 Identities=14% Similarity=0.065 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 31 KVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 31 k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
+.......+++++..|+|..|..++.++...+... + +...+..++..+++.+...+||..|-..|..+...
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL-D--DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-S--CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc-c--cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 45677888999999999999999999998776433 2 34567889999999999999999999998887643
No 28
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=93.16 E-value=0.41 Score=40.94 Aligned_cols=97 Identities=8% Similarity=-0.111 Sum_probs=59.7
Q ss_pred cCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHH
Q psy4458 5 EGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIEL 84 (303)
Q Consensus 5 ~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~ 84 (303)
.|++++|...+...---....-........+...+.+++..|++..|..+.+++-...... + +.......+...+..
T Consensus 196 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~--~~~~~~~~~~~la~~ 272 (338)
T 3ro2_A 196 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-K--DRAVEAQSCYSLGNT 272 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-T--CHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-c--chhHHHHHHHHHHHH
Confidence 4667777666655421111122445556677777777777777777777777776655333 2 234555555667777
Q ss_pred HHHhhhHHHHHHHHHHHHcC
Q psy4458 85 DQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 85 ~~~~~~f~eaa~~y~e~~~t 104 (303)
+...++|.+|...|.++...
T Consensus 273 ~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 273 YTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 77777777777777766543
No 29
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=93.08 E-value=0.51 Score=40.32 Aligned_cols=123 Identities=9% Similarity=0.002 Sum_probs=81.7
Q ss_pred CCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHH
Q psy4458 6 GDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELD 85 (303)
Q Consensus 6 ~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~ 85 (303)
..+++|...+...---.-..-+.......+...+++++..|++..|..+.+++-...... + +.......+..++..+
T Consensus 157 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~--~~~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 157 NALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-G--DKAAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-T--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc-C--ChHHHHHHHHHHHHHH
Confidence 345555555544311111112456778889999999999999999999999998776433 3 3456677778899999
Q ss_pred HHhhhHHHHHHHHHHHHcCCCCCCChHHHHHHHHH-HHHHHHhCCCC
Q psy4458 86 QHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN-VVLYLMLAPYD 131 (303)
Q Consensus 86 ~~~~~f~eaa~~y~e~~~t~~~~~~~~~~~~~L~~-~v~~~iLs~~~ 131 (303)
...++|.+|-..|.++........+......++.. +.++.-...+.
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 280 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHH
Confidence 99999999999999887543222344545554444 44444444443
No 30
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=92.93 E-value=1.6 Score=34.37 Aligned_cols=138 Identities=10% Similarity=-0.025 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCC
Q psy4458 29 KEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQ 108 (303)
Q Consensus 29 ~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t~~~~ 108 (303)
++...+++.++..+...|||..|....+++-.... + +. ..+...+..+...++|.+|-..|..+......
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p--~---~~----~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~- 71 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP--N---NV----ETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT- 71 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--T---CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C---CH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-
Confidence 45667889999999999999999999999876542 1 22 23445788888999999999998888754321
Q ss_pred CChHHHHHHHHHHHHHHHhCCCCchhhHhHHHhhhhhhcCCchHHHHHHHHhcCCcccCchHHHHHHHHhhccccc
Q psy4458 109 SDPVQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSV 184 (303)
Q Consensus 109 ~~~~~~~~~L~~~v~~~iLs~~~~~r~~ll~~l~~~~~~~~~p~~~~L~~~f~~~~li~~~~~~~~~~~~L~~~~~ 184 (303)
+ . ........++.....+......+...+..+|. ....+..+...+.... +|.+....|++.++-+|-
T Consensus 72 -~-~--~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~--~~~~~~~lg~~~~~~g--~~~~A~~~~~~~l~~~p~ 139 (184)
T 3vtx_A 72 -S-A--EAYYILGSANFMIDEKQAAIDALQRAIALNTV--YADAYYKLGLVYDSMG--EHDKAIEAYEKTISIKPG 139 (184)
T ss_dssp -C-H--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTT
T ss_pred -h-H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHhC--CchhHHHHHHHHHHhcch
Confidence 1 1 11111122222222222112212222222332 2233455666664332 466667778877776663
No 31
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.92 E-value=2.4 Score=36.78 Aligned_cols=96 Identities=7% Similarity=-0.005 Sum_probs=66.7
Q ss_pred cCCHHHHHHHHhccccccccCC-chHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 5 EGDVTEAANIIQELQVETYGSM-EKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 5 ~~~~~~Aa~~L~~i~vet~~~~-~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
.|++++|...+...- +-+..+ +...-...+...+.++...|++..|..+.+++-...... | +...-...+.-.+.
T Consensus 50 ~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-g--~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 50 RKELNLAGDSFLKAA-DYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-G--QFRRGANFKFELGE 125 (292)
T ss_dssp TTCTHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T--CHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-C--CHHHHHHHHHHHHH
Confidence 466666666654331 111111 223446678889999999999999999999998776433 3 34444555667888
Q ss_pred HHHHh-hhHHHHHHHHHHHHcC
Q psy4458 84 LDQHE-GSYLATCKHYRAILTT 104 (303)
Q Consensus 84 ~~~~~-~~f~eaa~~y~e~~~t 104 (303)
.+... ++|-+|-.+|.+++..
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~ 147 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEW 147 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHH
Confidence 88886 9999999999998764
No 32
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=92.91 E-value=2.7 Score=32.94 Aligned_cols=156 Identities=10% Similarity=0.037 Sum_probs=94.0
Q ss_pred CccCCHHHHHHHHhcc-ccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHH
Q psy4458 3 EDEGDVTEAANIIQEL-QVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLM 81 (303)
Q Consensus 3 e~~~~~~~Aa~~L~~i-~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~ 81 (303)
...|++++|...+... ..+. .-.+.+...+.++...|++..|.....++.....+ . ...+...
T Consensus 16 ~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~--~-------~~~~~~~ 79 (184)
T 3vtx_A 16 RTKGDFDGAIRAYKKVLKADP-------NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT--S-------AEAYYIL 79 (184)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--C-------HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch--h-------HHHHHHH
Confidence 4579999999998875 2221 12467888899999999999999999988765522 1 1233446
Q ss_pred HHHHHHhhhHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHhCCCCchhhHhHHHhhhhhhcCCchHHHHHHHHhc
Q psy4458 82 IELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFT 161 (303)
Q Consensus 82 ~~~~~~~~~f~eaa~~y~e~~~t~~~~~~~~~~~~~L~~~v~~~iLs~~~~~r~~ll~~l~~~~~~~~~p~~~~L~~~f~ 161 (303)
+..+...++|..|...|..+...... + .........++.-+..+..-...+...+..+|. ....+..+..++.
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~--~---~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTV--Y---ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG--FIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc--c---hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch--hhhHHHHHHHHHH
Confidence 77888899999999999888754321 1 111222233333333332222222233333443 2334556666664
Q ss_pred CCcccCchHHHHHHHHhhcccc
Q psy4458 162 NPELIKWSGLRQLYEEELFKTS 183 (303)
Q Consensus 162 ~~~li~~~~~~~~~~~~L~~~~ 183 (303)
... ++.+....|++.|+.+|
T Consensus 153 ~~g--~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 153 GKG--LRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HTT--CHHHHHHHHHHHHHTTH
T ss_pred HCC--CHHHHHHHHHHHHhCCc
Confidence 432 45666677777665544
No 33
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=92.83 E-value=1.6 Score=34.61 Aligned_cols=89 Identities=4% Similarity=-0.042 Sum_probs=68.4
Q ss_pred ccCCHHHHHH---HHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHH
Q psy4458 4 DEGDVTEAAN---IIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRL 80 (303)
Q Consensus 4 ~~~~~~~Aa~---~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~ 80 (303)
..|++++|.+ .+.+-+ ......+...+.++...|++..|..+..++-.... ..+ +.......+..
T Consensus 4 ~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~--~~~~~~~~~~~ 71 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHP---------ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQ-KSG--DHTAEHRALHQ 71 (203)
T ss_dssp ---CHHHHHHHHHHHHTST---------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-TTC--CHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCCh---------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH-HcC--CcHHHHHHHHH
Confidence 4799999999 664322 24577888899999999999999999999988773 333 34455566777
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 81 MIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 81 ~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
++..+...++|-+|-..|.++...
T Consensus 72 l~~~~~~~g~~~~A~~~~~~al~~ 95 (203)
T 3gw4_A 72 VGMVERMAGNWDAARRCFLEEREL 95 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 899999999999999999988765
No 34
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=92.52 E-value=0.94 Score=39.25 Aligned_cols=98 Identities=6% Similarity=-0.027 Sum_probs=73.6
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...--.....-+....+..+..++.++...|+|..|..+.+++-.......+ +.......+.-.+.
T Consensus 127 ~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~nlg~ 204 (293)
T 3u3w_A 127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--NEEFDVKVRYNHAK 204 (293)
T ss_dssp TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHH
Confidence 4578899988877653222222233356778899999999999999999999999865533323 45566667778999
Q ss_pred HHHHhhhHHHHHHHHHHHHc
Q psy4458 84 LDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~ 103 (303)
.+...++|.+|-.+|.+++.
T Consensus 205 ~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 205 ALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999998864
No 35
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=92.45 E-value=0.83 Score=40.54 Aligned_cols=102 Identities=9% Similarity=0.007 Sum_probs=73.2
Q ss_pred chHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCC
Q psy4458 27 EKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPC 106 (303)
Q Consensus 27 ~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t~~ 106 (303)
+.......+...+.++...|++..|..+.+++-......+ +.......+..++..+...++|.+|-..|..+.....
T Consensus 182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 258 (406)
T 3sf4_A 182 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG---DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 258 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 4556788999999999999999999999999987764433 3455677777899999999999999999998875432
Q ss_pred CCCChHHHHHHHHH-HHHHHHhCCCC
Q psy4458 107 IQSDPVQRHAVLQN-VVLYLMLAPYD 131 (303)
Q Consensus 107 ~~~~~~~~~~~L~~-~v~~~iLs~~~ 131 (303)
...+......++.. +.++.-...+.
T Consensus 259 ~~~~~~~~~~~~~~la~~~~~~g~~~ 284 (406)
T 3sf4_A 259 QLKDRAVEAQSCYSLGNTYTLLQDYE 284 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hCcCchHHHHHHHHHHHHHHHhCcHH
Confidence 22244444444444 33444444433
No 36
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=92.43 E-value=0.51 Score=42.43 Aligned_cols=95 Identities=7% Similarity=-0.142 Sum_probs=51.0
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...---....-........+...+++++..|++..|..+..++-...... + +.......+..++.
T Consensus 235 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~--~~~~~~~~~~~la~ 311 (411)
T 4a1s_A 235 LLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL-G--EREVEAQSCYSLGN 311 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT-T--CHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc-C--CHHHHHHHHHHHHH
Confidence 34666666665554411111112334455666666666666666666666666665554322 2 23334445555666
Q ss_pred HHHHhhhHHHHHHHHHHH
Q psy4458 84 LDQHEGSYLATCKHYRAI 101 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~ 101 (303)
.+...++|-+|..+|.++
T Consensus 312 ~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 312 TYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 666666666666665544
No 37
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=91.87 E-value=0.81 Score=41.06 Aligned_cols=148 Identities=7% Similarity=-0.040 Sum_probs=90.6
Q ss_pred chHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCC
Q psy4458 27 EKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPC 106 (303)
Q Consensus 27 ~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t~~ 106 (303)
........+...+++++..|++..|..+..++-...... + +.......+..++..+...++|.+|-..|.+++....
T Consensus 218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 218 DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF-G--DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-T--CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc-C--CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 445678889999999999999999999999998776443 3 3455677777899999999999999999998875433
Q ss_pred CCCChHHHHHHHHH-HHHHHHhCCCCchhhHhHHHhhhhhhcCC----chHHHHHHHHhcCCcccCchHHHHHHHHhh
Q psy4458 107 IQSDPVQRHAVLQN-VVLYLMLAPYDNEQSDLTHRVLEDKLLNE----IPLYKGLLQWFTNPELIKWSGLRQLYEEEL 179 (303)
Q Consensus 107 ~~~~~~~~~~~L~~-~v~~~iLs~~~~~r~~ll~~l~~~~~~~~----~p~~~~L~~~f~~~~li~~~~~~~~~~~~L 179 (303)
...+......++.. +.++.-+..+..-..-+...+...+.... ...+..+...+.... ++......|.+.+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al 370 (411)
T 4a1s_A 295 ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG--GHERALKYAEQHL 370 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHH
Confidence 22344444444444 44444444443322222222222222211 223445666664332 3444445555544
No 38
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=91.85 E-value=1.1 Score=39.19 Aligned_cols=83 Identities=7% Similarity=0.048 Sum_probs=53.8
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+.. + .-.+.++..+++++..|++..|...++++.... .+ . ....+......
T Consensus 113 ~~g~~~~Al~~l~~-~----------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~--~--~~~~l~~a~~~ 174 (291)
T 3mkr_A 113 YDQNPDAALRTLHQ-G----------DSLECMAMTVQILLKLDRLDLARKELKKMQDQD---ED--A--TLTQLATAWVS 174 (291)
T ss_dssp HTTCHHHHHHHHTT-C----------CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT--C--HHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhC-C----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---cC--c--HHHHHHHHHHH
Confidence 45777777777766 1 224567777888888888888888888876553 11 1 11222222334
Q ss_pred HHHHhhhHHHHHHHHHHHHcC
Q psy4458 84 LDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t 104 (303)
++...++|-+|...|.++...
T Consensus 175 l~~~~~~~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 175 LAAGGEKLQDAYYIFQEMADK 195 (291)
T ss_dssp HHHCTTHHHHHHHHHHHHHHH
T ss_pred HHhCchHHHHHHHHHHHHHHh
Confidence 444568888899998888764
No 39
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=91.81 E-value=5.1 Score=33.53 Aligned_cols=93 Identities=8% Similarity=0.007 Sum_probs=67.8
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+..+--...+ .....+.++..+.+++..|+|..|....+++-....+... . . .-+...+.
T Consensus 27 ~~g~~~~A~~~~~~~l~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~--~--~a~~~lg~ 97 (261)
T 3qky_A 27 NQGKYDRAIEYFKAVFTYGRT---HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR--V--P--QAEYERAM 97 (261)
T ss_dssp HTTCHHHHHHHHHHHGGGCSC---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT--H--H--HHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCCC---CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch--h--H--HHHHHHHH
Confidence 469999999999987432211 1133677889999999999999999999999877633221 1 1 22334677
Q ss_pred HHHH--------hhhHHHHHHHHHHHHcCC
Q psy4458 84 LDQH--------EGSYLATCKHYRAILTTP 105 (303)
Q Consensus 84 ~~~~--------~~~f~eaa~~y~e~~~t~ 105 (303)
.+.. .++|-+|-..|..++..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 98 CYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 7777 899999999999998654
No 40
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=91.45 E-value=2.2 Score=30.01 Aligned_cols=86 Identities=14% Similarity=0.018 Sum_probs=63.7
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...--.... -...+...+.+++..+++..|....+++-.... . +. ..+...+.
T Consensus 16 ~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~---~~----~~~~~~a~ 80 (118)
T 1elw_A 16 SVGNIDDALQCYSEAIKLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--D---WG----KGYSRKAA 80 (118)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--T---CH----HHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc--c---cH----HHHHHHHH
Confidence 468999999988876321111 145778889999999999999999998876542 1 11 23445777
Q ss_pred HHHHhhhHHHHHHHHHHHHcC
Q psy4458 84 LDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+...++|.+|...|..+...
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 888899999999999998764
No 41
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.24 E-value=3 Score=30.92 Aligned_cols=89 Identities=12% Similarity=-0.001 Sum_probs=63.8
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...--.. . ........+...+.+++..++|..|.....++-.... + + ...+..++.
T Consensus 40 ~~~~~~~A~~~~~~a~~~~-~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~--~----~~~~~~~a~ 107 (148)
T 2dba_A 40 KCGDYGGALAAYTQALGLD-A--TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG---G--D----VKALYRRSQ 107 (148)
T ss_dssp TTTCHHHHHHHHHHHHTSC-C--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS---C--C----HHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHc-c--cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc---c--C----HHHHHHHHH
Confidence 4688999998887653211 1 2233577888889999999999999988888876531 1 2 223345778
Q ss_pred HHHHhhhHHHHHHHHHHHHcC
Q psy4458 84 LDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+...++|.+|...|..+...
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHc
Confidence 888899999999998888754
No 42
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=91.12 E-value=4.1 Score=31.12 Aligned_cols=86 Identities=8% Similarity=-0.043 Sum_probs=61.5
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...--.... ....+...+.++...|++..|..+.+++-.... . +. ..+..++.
T Consensus 20 ~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~---~~----~~~~~~a~ 84 (186)
T 3as5_A 20 KAGRYSQAVMLLEQVYDADAF------DVDVALHLGIAYVKTGAVDRGTELLERSLADAP--D---NV----KVATVLGL 84 (186)
T ss_dssp HHTCHHHHHHHHTTTCCTTSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---CH----HHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCcc------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C---CH----HHHHHHHH
Confidence 358889999888876422111 146677888889999999999998888876541 1 12 23445677
Q ss_pred HHHHhhhHHHHHHHHHHHHcC
Q psy4458 84 LDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+...++|.+|-..|..+...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEA 105 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhc
Confidence 888889999999888888754
No 43
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=91.00 E-value=1.5 Score=39.28 Aligned_cols=109 Identities=16% Similarity=0.101 Sum_probs=73.6
Q ss_pred cCCHHHHHHHHhccccccccCCchHHHHH--HHHHHHHHHHhhcchhHHH---------HHHHHhhhhccCCCCcchHHH
Q psy4458 5 EGDVTEAANIIQELQVETYGSMEKKEKVT--LILEQMRLCLAKKDYIRTQ---------IISKKINTKFFDDEKDDVQEL 73 (303)
Q Consensus 5 ~~~~~~Aa~~L~~i~vet~~~~~~~~k~~--~~L~~~rL~L~~~D~~~a~---------~~~~ki~~~~~~~~~~~~~e~ 73 (303)
.+++.+|..++.+|.-+ +..|....++- +.|--.|..+..+++..+. ..++++.... ... +..+
T Consensus 25 ~~~~~~A~~l~~~i~~~-~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~--~~~--~~~l 99 (378)
T 3q15_A 25 QFSVPDAEILKAEVEQD-IQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQ--KKL--TGLL 99 (378)
T ss_dssp TTCHHHHHHHHHHHHHH-GGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGG--HHH--HHHH
T ss_pred HcCHHHHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccC--CCC--ccHH
Confidence 47899999999998654 35565566666 4455566677777777777 7888876533 111 3445
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCChHHHHHHH
Q psy4458 74 KLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVL 118 (303)
Q Consensus 74 k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t~~~~~~~~~~~~~L 118 (303)
...|+.+.|.++...++|.+|-.+|..+........++.....++
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~ 144 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFH 144 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHH
Confidence 556777899999999999999999999986543333443333333
No 44
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=90.87 E-value=1.6 Score=35.71 Aligned_cols=92 Identities=11% Similarity=0.005 Sum_probs=64.7
Q ss_pred cCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHH
Q psy4458 5 EGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIEL 84 (303)
Q Consensus 5 ~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~ 84 (303)
.|++++|...+...--. .+ .-.+.+...+.++...|++..|....+++-....+... .+......+...+..
T Consensus 55 ~~~~~~A~~~~~~al~~-----~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~g~~ 126 (228)
T 4i17_A 55 IKKYKEAADYFDIAIKK-----NY-NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNAT--IEKLYAIYYLKEGQK 126 (228)
T ss_dssp TTCHHHHHHHHHHHHHT-----TC-SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHHHHh-----Cc-chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH--HHHHHHHHHHHHhHH
Confidence 46666666665544210 11 13566788888899999999999998888766532211 333334667788999
Q ss_pred HHHhhhHHHHHHHHHHHHcC
Q psy4458 85 DQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 85 ~~~~~~f~eaa~~y~e~~~t 104 (303)
+...++|.+|-..|..++..
T Consensus 127 ~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 127 FQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHTTCHHHHHHHHHHHTTS
T ss_pred HHHhccHHHHHHHHHHHHhc
Confidence 99999999999999999754
No 45
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=90.78 E-value=0.45 Score=43.03 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=68.0
Q ss_pred CCccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCC-CCcchHHHHHHHHHH
Q psy4458 2 KEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDD-EKDDVQELKLKYYRL 80 (303)
Q Consensus 2 ~e~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~-~~~~~~e~k~~y~~~ 80 (303)
++.+|++++|.++|... ++. + +...-++.++..+++++..|+.+.|...+++......+. .+ +.. +..+..
T Consensus 110 ~~~~g~~eeAL~~l~~~-i~~-~--~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~--~d~--~l~~La 181 (310)
T 3mv2_B 110 QAILGDLDKSLETCVEG-IDN-D--EAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSG--DNE--MILNLA 181 (310)
T ss_dssp HHHHTCHHHHHHHHHHH-HTS-S--CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHH--HHH--HHHHHH
T ss_pred HHHcCCHHHHHHHHHHH-hcc-C--CCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccccc--chH--HHHHHH
Confidence 34579999999999876 211 1 114688999999999999999999999999886543100 00 122 334444
Q ss_pred HHHHHHHhh--hHHHHHHHHHHHHcCCC
Q psy4458 81 MIELDQHEG--SYLATCKHYRAILTTPC 106 (303)
Q Consensus 81 ~~~~~~~~~--~f~eaa~~y~e~~~t~~ 106 (303)
.+.+....+ ++.+|+..|.++.+.+.
T Consensus 182 ea~v~l~~g~~~~q~A~~~f~El~~~~p 209 (310)
T 3mv2_B 182 ESYIKFATNKETATSNFYYYEELSQTFP 209 (310)
T ss_dssp HHHHHHHHTCSTTTHHHHHHHHHHTTSC
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhCC
Confidence 554445455 99999999999987663
No 46
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=90.73 E-value=2 Score=37.11 Aligned_cols=96 Identities=16% Similarity=0.070 Sum_probs=62.8
Q ss_pred ccCCHHHHHHHHhcc-ccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQEL-QVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMI 82 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i-~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~ 82 (303)
..|++++|.+.+... .... ..-.....+.++...+.++...|++..|..+.+++-.......+ .+ .....+..+|
T Consensus 87 ~~~~y~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~-~~~~~~~~lg 162 (293)
T 2qfc_A 87 KQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID--VY-QNLYIENAIA 162 (293)
T ss_dssp HTTCHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC--TT-HHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc--hH-HHHHHHHHHH
Confidence 357888887776532 1111 11122345566666778888888999998888887655433222 22 2355666788
Q ss_pred HHHHHhhhHHHHHHHHHHHHc
Q psy4458 83 ELDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 83 ~~~~~~~~f~eaa~~y~e~~~ 103 (303)
..+...++|-+|-.+|..++.
T Consensus 163 ~~y~~~~~~~~A~~~~~kal~ 183 (293)
T 2qfc_A 163 NIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 888889999998888888873
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=90.66 E-value=2.6 Score=35.11 Aligned_cols=158 Identities=10% Similarity=0.090 Sum_probs=92.4
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...--..... .+.+...+.++...|++..|....+++-... . +.+.....+...+.
T Consensus 15 ~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~----~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 15 KNNNYAEAIEVFNKLEAKKYNS------PYIYNRRAVCYYELAKYDLAQKDIETYFSKV--N----ATKAKSADFEYYGK 82 (272)
T ss_dssp TTTCHHHHHHHHHHHHHTTCCC------STTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--C----TTTCCHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--C----chhHHHHHHHHHHH
Confidence 4689999999988763211111 2356778889999999999999999887622 1 12233444567889
Q ss_pred HHHHhhhHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHhCCCCchhhHhHHHhhhhhhcCCchHHHHHH-HHhcC
Q psy4458 84 LDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLL-QWFTN 162 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t~~~~~~~~~~~~~L~~~v~~~iLs~~~~~r~~ll~~l~~~~~~~~~p~~~~L~-~~f~~ 162 (303)
.+...++|.+|-..|..+...... +. ........++.-+..+..-..-+...+..+|. ....+..+. ..|..
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~--~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT--RL---DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT--DPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT--CT---HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC--CHHHHHHHHHHHHHT
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc--cH---HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC--cHHHHHHHHHHHHHH
Confidence 999999999999999999764321 11 11112233333332222212211112222221 223345566 56655
Q ss_pred CcccCchHHHHHHHHhhcccc
Q psy4458 163 PELIKWSGLRQLYEEELFKTS 183 (303)
Q Consensus 163 ~~li~~~~~~~~~~~~L~~~~ 183 (303)
. .+......|+..+..+|
T Consensus 156 ~---~~~~A~~~~~~a~~~~p 173 (272)
T 3u4t_A 156 K---EYVKADSSFVKVLELKP 173 (272)
T ss_dssp T---CHHHHHHHHHHHHHHST
T ss_pred H---HHHHHHHHHHHHHHhCc
Confidence 5 56666667777666555
No 48
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=90.56 E-value=2 Score=31.22 Aligned_cols=86 Identities=12% Similarity=-0.003 Sum_probs=62.6
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...--.... -.+.+...+.+++..+++..|..+.+++-.... . +. ..+..++.
T Consensus 28 ~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~---~~----~~~~~la~ 92 (133)
T 2lni_A 28 QKGDYPQAMKHYTEAIKRNPK------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEP--T---FI----KGYTRKAA 92 (133)
T ss_dssp HTTCSHHHHHHHHHHHTTCTT------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT--T---CH----HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--C---ch----HHHHHHHH
Confidence 468889998888765321111 156788889999999999999999998876542 1 11 23445788
Q ss_pred HHHHhhhHHHHHHHHHHHHcC
Q psy4458 84 LDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+...++|.+|-..|..+...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 888899999999999888753
No 49
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=90.51 E-value=5.2 Score=34.79 Aligned_cols=72 Identities=4% Similarity=-0.078 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy4458 30 EKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 105 (303)
Q Consensus 30 ~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t~ 105 (303)
.-...+...+.++...|+|..|..+.+++-..... .| +.......+.-.+..+.. ++|-+|-.+|..++...
T Consensus 74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~-~g--~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~ 145 (307)
T 2ifu_A 74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE-NG--TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF 145 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHT-TT--CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cC--CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH
Confidence 44567778888888999999999999999877633 33 333444555667777777 99999999999887654
No 50
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=90.39 E-value=3.2 Score=30.22 Aligned_cols=93 Identities=6% Similarity=0.008 Sum_probs=60.8
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+..+--...+. ....+.++..+.+++..|+|..|.....++-....+.. . ....+...+.
T Consensus 14 ~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~----~--~~~~~~~la~ 84 (129)
T 2xev_A 14 KNGKYDDASQLFLSFLELYPNG---VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD----K--AAGGLLKLGL 84 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHCSSS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST----T--HHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHCCCC---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc----c--cHHHHHHHHH
Confidence 4688888888887753211111 12235667788888888999998888888876542211 1 1122334677
Q ss_pred HHHHhhhHHHHHHHHHHHHcCC
Q psy4458 84 LDQHEGSYLATCKHYRAILTTP 105 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t~ 105 (303)
.+...++|-+|-..|..+...+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 7788888888888888887543
No 51
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=90.28 E-value=2.9 Score=29.94 Aligned_cols=86 Identities=8% Similarity=-0.071 Sum_probs=62.2
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...--.... -...+...+.++...+++..|..+..++-.... . + ...+...+.
T Consensus 24 ~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~---~----~~~~~~~~~ 88 (131)
T 2vyi_A 24 KVENFEAAVHFYGKAIELNPA------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP--A---Y----SKAYGRMGL 88 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---C----HHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc--c---C----HHHHHHHHH
Confidence 468889998888765321111 145678888999999999999999988876542 1 1 123455788
Q ss_pred HHHHhhhHHHHHHHHHHHHcC
Q psy4458 84 LDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+...++|.+|...|..+...
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 888899999999999888754
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=90.02 E-value=7 Score=31.99 Aligned_cols=84 Identities=5% Similarity=-0.120 Sum_probs=51.6
Q ss_pred cCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHH
Q psy4458 5 EGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIEL 84 (303)
Q Consensus 5 ~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~ 84 (303)
.|++++|...+...--... .-.+.+...+.++...|++..|..+.+++-.... . + ...+...+..
T Consensus 50 ~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~---~----~~~~~~la~~ 114 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEIDP------SSADAHAALAVVFQTEMEPKLADEEYRKALASDS--R---N----ARVLNNYGGF 114 (252)
T ss_dssp TTCTGGGHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---C----HHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--C---c----HHHHHHHHHH
Confidence 4666666666655421110 1135566777777778888888877777765431 1 1 1233445666
Q ss_pred HHHhhhHHHHHHHHHHHHc
Q psy4458 85 DQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 85 ~~~~~~f~eaa~~y~e~~~ 103 (303)
+...++|.+|-..|..+..
T Consensus 115 ~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHh
Confidence 7778888888888887765
No 53
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=89.96 E-value=3.6 Score=29.61 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=46.3
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecC--CCceEEeccCCChhHHHHHHHHHHHHHHHH
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDR--PAGIINFARNKDPGEILNEWSASLNELMKL 283 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq--~~giV~f~~~~~~~~~l~~w~~~i~~l~~~ 283 (303)
...++...||+.+|+|..-+-..+..|...|-|...-+. ..+.+... ....+.+..+...+..+.+.
T Consensus 32 ~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t--~~g~~~~~~~~~~~~~~~~~ 100 (109)
T 1sfx_A 32 RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSA--EKPEKVLKEFKSSILGEIER 100 (109)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEE--CCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEec--CcHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999999776554 33333332 23334454454444444443
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=89.77 E-value=6.4 Score=31.21 Aligned_cols=85 Identities=8% Similarity=-0.114 Sum_probs=61.3
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...--.... -.+.+...+.++...|++..|..+..++-.... . +. ..+..++.
T Consensus 20 ~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~---~~----~~~~~l~~ 84 (225)
T 2vq2_A 20 RGQDYRQATASIEDALKSDPK------NELAWLVRAEIYQYLKVNDKAQESFRQALSIKP--D---SA----EINNNYGW 84 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---CH----HHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--C---Ch----HHHHHHHH
Confidence 468899998888765321111 145677788889999999999999988876542 1 11 13345778
Q ss_pred HHHHh-hhHHHHHHHHHHHHc
Q psy4458 84 LDQHE-GSYLATCKHYRAILT 103 (303)
Q Consensus 84 ~~~~~-~~f~eaa~~y~e~~~ 103 (303)
.+... ++|.+|-..|..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHhcCcHHHHHHHHHHHHc
Confidence 88888 999999999999887
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=89.67 E-value=2.5 Score=35.14 Aligned_cols=92 Identities=8% Similarity=0.029 Sum_probs=71.2
Q ss_pred CCccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHH
Q psy4458 2 KEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLM 81 (303)
Q Consensus 2 ~e~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~ 81 (303)
...+|++++|...+..+--. ...+.....+.+...++++...|++..|....+++-.... . +. ..+..+
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~---~~----~~~~~l 83 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILAS--RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP--D---MP----EVFNYL 83 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--C---CH----HHHHHH
T ss_pred cCccchHHHHHHHHHHHHhc--ccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC--C---cH----HHHHHH
Confidence 45679999999998876432 2234567788999999999999999999999999876542 1 11 234557
Q ss_pred HHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 82 IELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 82 ~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
+..+...++|-+|-.+|..+...
T Consensus 84 a~~~~~~~~~~~A~~~~~~al~~ 106 (275)
T 1xnf_A 84 GIYLTQAGNFDAAYEAFDSVLEL 106 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHhc
Confidence 88888999999999999998764
No 56
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=89.59 E-value=6.6 Score=38.77 Aligned_cols=160 Identities=13% Similarity=0.040 Sum_probs=99.4
Q ss_pred ccCCHHHHHHHHhccc---cccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQ---VETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRL 80 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~---vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~ 80 (303)
..|++++|...+...- ...-+... ..-.+.++..+++++..|++..|....+++-.... + ++ ..+..
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~--~~----~a~~~ 472 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG---W--RW----RLVWY 472 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC---C--CH----HHHHH
T ss_pred cccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc---c--hH----HHHHH
Confidence 4688889988887653 00000011 12245788899999999999999999999876542 1 23 23446
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHhCCCCchhhHhHHHhhhhhhcCCchHHHHHHHHh
Q psy4458 81 MIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWF 160 (303)
Q Consensus 81 ~~~~~~~~~~f~eaa~~y~e~~~t~~~~~~~~~~~~~L~~~v~~~iLs~~~~~r~~ll~~l~~~~~~~~~p~~~~L~~~f 160 (303)
.+..+...++|-+|-..|..++.... ......+....++.-+..+.. ...+-..+..+|.. ...+..+..++
T Consensus 473 lg~~~~~~g~~~~A~~~~~~al~l~P-----~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~--~~a~~~lg~~~ 544 (681)
T 2pzi_A 473 RAVAELLTGDYDSATKHFTEVLDTFP-----GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV--ISAAFGLARAR 544 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST-----TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch--HHHHHHHHHHH
Confidence 88888999999999999999975421 111222333555555666665 54444444445532 33456676666
Q ss_pred cCCcccCchHHHHHHHHhhcccc
Q psy4458 161 TNPELIKWSGLRQLYEEELFKTS 183 (303)
Q Consensus 161 ~~~~li~~~~~~~~~~~~L~~~~ 183 (303)
.... ++.+....|++.+.-++
T Consensus 545 ~~~g--~~~~A~~~~~~al~l~P 565 (681)
T 2pzi_A 545 SAEG--DRVGAVRTLDEVPPTSR 565 (681)
T ss_dssp HHTT--CHHHHHHHHHTSCTTST
T ss_pred HHcC--CHHHHHHHHHhhcccCc
Confidence 4432 45666677777665544
No 57
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=89.30 E-value=4 Score=35.56 Aligned_cols=69 Identities=6% Similarity=-0.016 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy4458 31 KVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 31 k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~ 103 (303)
-...+..++.++.. +++..|..+.+++-...... + +.......+.-.+..+...++|-+|..+|..+..
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE-E--RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT-T--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC-C--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555566666665 66666666666665555322 2 2334444455566666666666666666666554
No 58
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=88.89 E-value=0.76 Score=33.47 Aligned_cols=42 Identities=17% Similarity=0.187 Sum_probs=36.1
Q ss_pred HHHHhhhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEE
Q psy4458 209 RVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 250 (303)
Q Consensus 209 ~~isk~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~ak 250 (303)
+.+.+-...++++.||+.||+|+.-|...|..+...|.|.-.
T Consensus 8 l~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 8 RDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 333445789999999999999999999999999999988543
No 59
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=88.85 E-value=1.8 Score=35.95 Aligned_cols=99 Identities=12% Similarity=0.055 Sum_probs=70.6
Q ss_pred ccCCHHHHHHHHhccccc--cccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVE--TYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLM 81 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~ve--t~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~ 81 (303)
..|++++|...+...--- ..+.-+.......+..++.++...|++..|..+..++-.......++ +.......+..+
T Consensus 97 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~l 175 (283)
T 3edt_B 97 KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP-DDPNVAKTKNNL 175 (283)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT-TCHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 568999998888765311 11111224567888999999999999999999999987664221111 122334566678
Q ss_pred HHHHHHhhhHHHHHHHHHHHHc
Q psy4458 82 IELDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 82 ~~~~~~~~~f~eaa~~y~e~~~ 103 (303)
+..+...++|-+|-..|.++..
T Consensus 176 a~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 176 ASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999998864
No 60
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=88.80 E-value=0.71 Score=32.83 Aligned_cols=39 Identities=10% Similarity=0.123 Sum_probs=34.5
Q ss_pred HHHhhhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceE
Q psy4458 210 VMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 248 (303)
Q Consensus 210 ~isk~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~ 248 (303)
.+.+-...++++.||+.|++|+.-+...|..+...|.|.
T Consensus 9 ~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 9 DLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 334457899999999999999999999999999999873
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=88.66 E-value=2.6 Score=37.63 Aligned_cols=103 Identities=15% Similarity=0.157 Sum_probs=70.4
Q ss_pred cCCHHHHHHHHhccccccccCCchHHHHH--HHHHHHHHHHhhcchhHHH-----------HHHHHhhhhccCCCCcchH
Q psy4458 5 EGDVTEAANIIQELQVETYGSMEKKEKVT--LILEQMRLCLAKKDYIRTQ-----------IISKKINTKFFDDEKDDVQ 71 (303)
Q Consensus 5 ~~~~~~Aa~~L~~i~vet~~~~~~~~k~~--~~L~~~rL~L~~~D~~~a~-----------~~~~ki~~~~~~~~~~~~~ 71 (303)
.+++++|..++.+|.-+ ...|.....+- +.|-..|..+..+++..+. ..++++..... .. +.
T Consensus 25 ~~~~~~A~~l~~~i~~~-~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~--~~--~~ 99 (383)
T 3ulq_A 25 RFSIPDAEYLRREIKQE-LDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQA--RL--TG 99 (383)
T ss_dssp TTCHHHHHHHHHHHHHH-HHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTH--HH--HH
T ss_pred HcCHHHHHHHHHHHHHH-HHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCC--Cc--hh
Confidence 58999999999999543 45664444443 4466778888888888777 77787765321 11 12
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCChH
Q psy4458 72 ELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPV 112 (303)
Q Consensus 72 e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t~~~~~~~~ 112 (303)
-+...|+.+.|.++...++|.+|-..|..+........++.
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 140 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRI 140 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHH
Confidence 23334555789999999999999999999987543323433
No 62
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=88.20 E-value=2.1 Score=36.26 Aligned_cols=100 Identities=12% Similarity=0.093 Sum_probs=71.0
Q ss_pred CccCCHHHHHHHHhcccccc--ccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHH
Q psy4458 3 EDEGDVTEAANIIQELQVET--YGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRL 80 (303)
Q Consensus 3 e~~~~~~~Aa~~L~~i~vet--~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~ 80 (303)
...|++++|...+...---. ...-+.......+...++++...|++..|..+.+++-.......++ +.......+..
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ 200 (311)
T 3nf1_A 122 GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP-DDPNVAKTKNN 200 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT-TCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 35689999998887653110 0001224567778899999999999999999999987664322111 12233456667
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHc
Q psy4458 81 MIELDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 81 ~~~~~~~~~~f~eaa~~y~e~~~ 103 (303)
++..+...++|-+|...|.+++.
T Consensus 201 la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 201 LASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 89999999999999999998864
No 63
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=88.09 E-value=5.3 Score=28.14 Aligned_cols=86 Identities=14% Similarity=0.038 Sum_probs=60.5
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...--... .-.+.+...+.++...+++..|..+.+++..... . +. ..+...+.
T Consensus 21 ~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~---~~----~~~~~la~ 85 (125)
T 1na0_A 21 KQGDYDEAIEYYQKALELDP------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--N---NA----EAWYNLGN 85 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---CH----HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCc------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--c---cH----HHHHHHHH
Confidence 46888898888876532111 1135677888889999999999998888876431 1 11 23345677
Q ss_pred HHHHhhhHHHHHHHHHHHHcC
Q psy4458 84 LDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+...++|.+|...|..+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 788889999999888888654
No 64
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=88.07 E-value=4.4 Score=30.65 Aligned_cols=86 Identities=10% Similarity=-0.009 Sum_probs=59.9
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...--.... -.+.+...+.+++..|+|..|....+++-.... . +. ..+..++.
T Consensus 25 ~~~~~~~A~~~~~~al~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~---~~----~~~~~~a~ 89 (166)
T 1a17_A 25 KAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELDK--K---YI----KGYYRRAA 89 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---CH----HHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--c---cH----HHHHHHHH
Confidence 458888888877764321111 156677888888889999999888888876542 1 11 23445777
Q ss_pred HHHHhhhHHHHHHHHHHHHcC
Q psy4458 84 LDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+...++|-+|...|..++..
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh
Confidence 888889999998888888754
No 65
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=88.05 E-value=4.2 Score=31.45 Aligned_cols=86 Identities=6% Similarity=-0.051 Sum_probs=58.8
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...---. . .-...+...+.+++..++|..|....+++-.... . + ...+..++.
T Consensus 23 ~~g~~~~A~~~~~~al~~~-p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~---~----~~~~~~lg~ 87 (164)
T 3sz7_A 23 ARKEYSKAIDLYTQALSIA-P-----ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP--K---Y----SKAWSRLGL 87 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHS-T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---C----HHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-C-----cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--C---C----HHHHHHHHH
Confidence 4578888888776642111 1 1246677888888888888888888888766541 1 1 233445778
Q ss_pred HHHHhhhHHHHHHHHHHHHcC
Q psy4458 84 LDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+...++|.+|-.+|..++..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888887653
No 66
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=88.02 E-value=12 Score=31.99 Aligned_cols=161 Identities=12% Similarity=0.038 Sum_probs=84.0
Q ss_pred cCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHH-------
Q psy4458 5 EGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKY------- 77 (303)
Q Consensus 5 ~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y------- 77 (303)
.|++++|...+...--... .-.+.+...++++...|++..|....+++-....+ .......|
T Consensus 167 ~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 167 EGEPRKAISDLKAASKLKS------DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-----HKRCFAHYKQVKKLN 235 (359)
T ss_dssp TTCHHHHHHHHHHHHTTCS------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-----chHHHHHHHHHHHHH
Confidence 4666666666655422110 11245667777777778888877777777654421 11211111
Q ss_pred -HHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHH-HHHHhCCCCchhhHhHHHhhh-hhhcCCchHHH
Q psy4458 78 -YRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNVV-LYLMLAPYDNEQSDLTHRVLE-DKLLNEIPLYK 154 (303)
Q Consensus 78 -~~~~~~~~~~~~~f~eaa~~y~e~~~t~~~~~~~~~~~~~L~~~v-~~~iLs~~~~~r~~ll~~l~~-~~~~~~~p~~~ 154 (303)
....+..+...++|.+|...|..+...... ++.-+...+..+. ++.-+..+. +-...+.+... +|. ....+.
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~~~~~~~~--~~~~~~ 310 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPS--VAEYTVRSKERICHCFSKDEKPV-EAIRICSEVLQMEPD--NVNALK 310 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTT--CHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCcc--cHHHHH
Confidence 223477788999999999999998864322 2222222222222 222222221 22222233322 332 233455
Q ss_pred HHHHHhcCCcccCchHHHHHHHHhhcccc
Q psy4458 155 GLLQWFTNPELIKWSGLRQLYEEELFKTS 183 (303)
Q Consensus 155 ~L~~~f~~~~li~~~~~~~~~~~~L~~~~ 183 (303)
.+...+.... ++......|++.+.-+|
T Consensus 311 ~~~~~~~~~g--~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 311 DRAEAYLIEE--MYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHcC--CHHHHHHHHHHHHhcCC
Confidence 6666664332 46666777877776655
No 67
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=88.02 E-value=6.8 Score=29.25 Aligned_cols=83 Identities=13% Similarity=0.035 Sum_probs=42.2
Q ss_pred cCCHHHHHHHHhcc-ccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 5 EGDVTEAANIIQEL-QVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 5 ~~~~~~Aa~~L~~i-~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
.|++++|.+.+... .... .-.+.+...+.+++..|++..|....+++-..- .. +. ..+..+|.
T Consensus 26 ~g~~~~A~~~~~~al~~~p-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~---~~----~a~~~lg~ 89 (126)
T 4gco_A 26 KGDYPTAMRHYNEAVKRDP-------ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SK---FI----KGYIRKAA 89 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT---CH----HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-------CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hh---hh----HHHHHHHH
Confidence 45666666655442 2211 113445555666666666666666666554432 11 11 12334555
Q ss_pred HHHHhhhHHHHHHHHHHHHc
Q psy4458 84 LDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~ 103 (303)
.+...++|.+|-..|..++.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 56666666666666666553
No 68
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=87.95 E-value=4.9 Score=29.47 Aligned_cols=85 Identities=8% Similarity=-0.092 Sum_probs=58.1
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...---. . .-.+.+...+.+++..|+|..|....+++-.... + + ...+..++.
T Consensus 21 ~~~~~~~A~~~~~~al~~~-~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~---~----~~~~~~l~~ 85 (137)
T 3q49_B 21 VGRKYPEAAACYGRAITRN-P-----LVAVYYTNRALCYLKMQQPEQALADCRRALELDG--Q---S----VKAHFFLGQ 85 (137)
T ss_dssp HTTCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---C----HHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHhhC-c-----CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--h---h----HHHHHHHHH
Confidence 4678888888777542111 1 1145778888888888999998888888876441 1 1 123445777
Q ss_pred HHHHhhhHHHHHHHHHHHHc
Q psy4458 84 LDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~ 103 (303)
.+...++|-+|-..|..++.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 78888888888888887753
No 69
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=87.88 E-value=3 Score=29.25 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=34.8
Q ss_pred eeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCC
Q psy4458 217 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRP 254 (303)
Q Consensus 217 ~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~ 254 (303)
.+|...||+.+|+|...|...|-+|..+|.|...-+.+
T Consensus 31 ~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~ 68 (77)
T 1qgp_A 31 ATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTP 68 (77)
T ss_dssp CEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSS
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 89999999999999999999999999999997765544
No 70
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=87.79 E-value=5.3 Score=29.14 Aligned_cols=84 Identities=11% Similarity=-0.016 Sum_probs=61.3
Q ss_pred ccCCHHHHHHHHhccc-cccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQ-VETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMI 82 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~-vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~ 82 (303)
..|++++|...+...- ... . -...+...+.+++..|+|..|....+++-.... + + ...+..++
T Consensus 16 ~~~~~~~A~~~~~~al~~~p-~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~---~----~~~~~~lg 79 (126)
T 3upv_A 16 TKSDWPNAVKAYTEMIKRAP-E------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--N---F----VRAYIRKA 79 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---C----HHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-C------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--C---c----HHHHHHHH
Confidence 4688999988887542 211 1 136788889999999999999999988876542 1 2 22344578
Q ss_pred HHHHHhhhHHHHHHHHHHHHc
Q psy4458 83 ELDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 83 ~~~~~~~~f~eaa~~y~e~~~ 103 (303)
..+...++|.+|-..|..++.
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHH
Confidence 888889999999988888864
No 71
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=87.73 E-value=1.3 Score=36.70 Aligned_cols=99 Identities=16% Similarity=0.095 Sum_probs=71.1
Q ss_pred ccCCHHHHHHHHhccccc---cccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVE---TYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRL 80 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~ve---t~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~ 80 (303)
..|++++|...+...--- .++ -+.......+...+.++...|++..|..+..++-.......++ +.......+..
T Consensus 55 ~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~ 132 (283)
T 3edt_B 55 DQNKYKEAAHLLNDALAIREKTLG-KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-FHPDVAKQLNN 132 (283)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHH
Confidence 468899998888765311 011 1234567788999999999999999999999987664222111 11233556667
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 81 MIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 81 ~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
++..+...++|.+|-..|.+++..
T Consensus 133 la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 133 LALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 899999999999999999988754
No 72
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=87.64 E-value=3.8 Score=27.61 Aligned_cols=70 Identities=11% Similarity=0.018 Sum_probs=52.7
Q ss_pred CchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 26 MEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 26 ~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
++.....+.+...+..++..+++..|....+++-.... + +. ..+..++..+...++|-+|...|..+...
T Consensus 3 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~---~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--N---NA----EAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--C---CH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34445567888899999999999999999999876542 1 11 23445788888999999999999988754
No 73
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=87.58 E-value=4.3 Score=28.15 Aligned_cols=89 Identities=10% Similarity=-0.024 Sum_probs=60.2
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...---... -.+.+...+.++...+++..|....+++-..... .. . ...+..++.
T Consensus 18 ~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~--~----~~~~~~l~~ 84 (112)
T 2kck_A 18 DAGNYTESIDLFEKAIQLDPE------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIED-EY--N----KDVWAAKAD 84 (112)
T ss_dssp SSCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TT--C----HHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cc--h----HHHHHHHHH
Confidence 468888888887664211111 1346678888888899999999888888765422 00 1 223445777
Q ss_pred HHHHh-hhHHHHHHHHHHHHcCC
Q psy4458 84 LDQHE-GSYLATCKHYRAILTTP 105 (303)
Q Consensus 84 ~~~~~-~~f~eaa~~y~e~~~t~ 105 (303)
.+... ++|.+|-.+|..+....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 78888 89988888888887543
No 74
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=87.53 E-value=2.8 Score=30.56 Aligned_cols=88 Identities=10% Similarity=0.043 Sum_probs=62.9
Q ss_pred cCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHH
Q psy4458 5 EGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIEL 84 (303)
Q Consensus 5 ~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~ 84 (303)
.|++++|...+...--. ..+...-...+...+.+++..|+|..|....+++-....+ + ...+..++..
T Consensus 3 ~g~~~~A~~~~~~al~~---~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~----~~~~~~l~~~ 70 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS---GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-----H----QALRVFYAMV 70 (117)
T ss_dssp ----CCCHHHHHHHHSS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C----HHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHc---CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----c----hHHHHHHHHH
Confidence 57777887777654321 0124466788999999999999999999999999766521 2 2234457888
Q ss_pred HHHhhhHHHHHHHHHHHHcC
Q psy4458 85 DQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 85 ~~~~~~f~eaa~~y~e~~~t 104 (303)
+...++|-+|-..|..++..
T Consensus 71 ~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 71 LYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 89999999999999988754
No 75
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=87.44 E-value=10 Score=30.57 Aligned_cols=61 Identities=8% Similarity=-0.041 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy4458 33 TLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAIL 102 (303)
Q Consensus 33 ~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~ 102 (303)
..+...++++...|++..|..+.+++-.... . +. ..+...+..+...++|.+|-..|..+.
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~---~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~ 152 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAGM--E---NG----DLFYMLGTVLVKLEQPKLALPYLQRAV 152 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--C---SH----HHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--C---CH----HHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344445555555555555555555443321 0 11 112234444555555555555555554
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=87.41 E-value=10 Score=30.68 Aligned_cols=136 Identities=11% Similarity=-0.038 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCChH
Q psy4458 33 TLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPV 112 (303)
Q Consensus 33 ~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t~~~~~~~~ 112 (303)
+.++..+..++..|+|..|....+++-.... ..+ . ..+...+..+...++|.+|-..|..++.... .
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~---~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-----~ 74 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-NQD---S----VTAYNCGVCADNIKKYKEAADYFDIAIKKNY-----N 74 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCC---H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-----S
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccC-CCC---c----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-----c
Confidence 6788899999999999999999999876552 122 2 1222388999999999999999999986432 1
Q ss_pred HHHHHHHHHHHHHHhCCCCchhhHhHHHhhhhhhcCCc-----hHHHHHHHHhcCCcccCchHHHHHHHHhhcccc
Q psy4458 113 QRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEI-----PLYKGLLQWFTNPELIKWSGLRQLYEEELFKTS 183 (303)
Q Consensus 113 ~~~~~L~~~v~~~iLs~~~~~r~~ll~~l~~~~~~~~~-----p~~~~L~~~f~~~~li~~~~~~~~~~~~L~~~~ 183 (303)
..........++.-+..+..-...+-..+..+|..... ..+..+...+... -++......|.+.+.-+|
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p 148 (228)
T 4i17_A 75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA--GNIEKAEENYKHATDVTS 148 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh--ccHHHHHHHHHHHHhcCC
Confidence 11222222333333333322222222223333432211 2234444544332 245666677777766555
No 77
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=87.18 E-value=4.4 Score=35.30 Aligned_cols=121 Identities=12% Similarity=0.043 Sum_probs=74.6
Q ss_pred CccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHH
Q psy4458 3 EDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMI 82 (303)
Q Consensus 3 e~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~ 82 (303)
...|++++|...+..+.--. +......+..-.+.++...|++..|..+.+++..... + + ...+..++
T Consensus 141 ~~~g~~~~A~~~l~~~~~~~----p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p--~---~----~~~~~~la 207 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQD----EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS--P---T----LLLLNGQA 207 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC--C---C----HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhC----cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC--C---c----HHHHHHHH
Confidence 45799999999998864221 1111222222334555567899999999999987642 1 2 23455688
Q ss_pred HHHHHhhhHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHhCCCCch-hhHhHHHhh
Q psy4458 83 ELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNVVLYLMLAPYDNE-QSDLTHRVL 142 (303)
Q Consensus 83 ~~~~~~~~f~eaa~~y~e~~~t~~~~~~~~~~~~~L~~~v~~~iLs~~~~~-r~~ll~~l~ 142 (303)
..+...++|-+|-..|.+++....- + ..++..++.+....+-..+ -.+++.++.
T Consensus 208 ~~~~~~g~~~eA~~~l~~al~~~p~--~----~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGVLQEALDKDSG--H----PETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8999999999999999999864321 2 2234444444444333322 235555555
No 78
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=87.17 E-value=11 Score=30.82 Aligned_cols=88 Identities=6% Similarity=-0.082 Sum_probs=63.9
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...--.. . .-...+...+.+++..|++..|..+.+++-. .....+ . ...+..++.
T Consensus 83 ~~~~~~~A~~~~~~a~~~~-~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~--~----~~~~~~la~ 149 (252)
T 2ho1_A 83 TEMEPKLADEEYRKALASD-S-----RNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPE--R----SRVFENLGL 149 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTT--H----HHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHC-c-----CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccCcc--c----HHHHHHHHH
Confidence 4689999999887653211 1 1245778889999999999999999998876 101111 1 234455788
Q ss_pred HHHHhhhHHHHHHHHHHHHcC
Q psy4458 84 LDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+...++|.+|-..|..+...
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 150 VSLQMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc
Confidence 888999999999999998754
No 79
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=87.15 E-value=7.9 Score=29.11 Aligned_cols=66 Identities=11% Similarity=-0.028 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 30 EKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 30 ~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
.-.+.++..+..++..|+|..|....+++-.... . + ..++..++..+...++|.+|-.+|..+...
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~---~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH--Y---D----ARYFLGLGACRQSLGLYEQALQSYSYGALM 81 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC--c---c----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3466778899999999999999999998876542 1 1 234456888899999999999999998754
No 80
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=86.85 E-value=5.7 Score=32.13 Aligned_cols=87 Identities=13% Similarity=0.013 Sum_probs=57.2
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...--.... -.+.+...++++...|++..|..+.+++-.... . + ...+...+.
T Consensus 35 ~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~---~----~~~~~~la~ 99 (243)
T 2q7f_A 35 EFGDYEKAAEAFTKAIEENKE------DAIPYINFANLLSSVNELERALAFYDKALELDS--S---A----ATAYYGAGN 99 (243)
T ss_dssp -------CCTTHHHHHTTCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---C----HHHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--c---c----hHHHHHHHH
Confidence 457788887777665321111 146778889999999999999999998876542 1 1 233445788
Q ss_pred HHHHhhhHHHHHHHHHHHHcCC
Q psy4458 84 LDQHEGSYLATCKHYRAILTTP 105 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t~ 105 (303)
.+...++|.+|-..|..+....
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~ 121 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG 121 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHHHhC
Confidence 8888999999999999887543
No 81
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=86.78 E-value=12 Score=30.61 Aligned_cols=155 Identities=12% Similarity=0.044 Sum_probs=88.4
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...--.. + .-.+.+...+.+++..|++..|....+++-....+ +.+ .+...+.
T Consensus 17 ~~g~~~~A~~~~~~al~~~----p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-----~~~----a~~~lg~ 81 (217)
T 2pl2_A 17 ALGRYDAALTLFERALKEN----P--QDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-----YLG----GYMVLSE 81 (217)
T ss_dssp HTTCHHHHHHHHHHHHTTS----S--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHH----HHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----cHH----HHHHHHH
Confidence 4689999999887642111 1 11456788899999999999999999998765521 222 2334566
Q ss_pred HHHHh-----------hhHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHhCCCCchhhHhHHHhhhhhhcCCchH
Q psy4458 84 LDQHE-----------GSYLATCKHYRAILTTPCIQSDPVQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPL 152 (303)
Q Consensus 84 ~~~~~-----------~~f~eaa~~y~e~~~t~~~~~~~~~~~~~L~~~v~~~iLs~~~~~r~~ll~~l~~~~~~~~~p~ 152 (303)
.+... ++|.+|-..|..+..... ......+....++.-+..+..-...+...+..+ .....
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~ 153 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-----RYAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEI 153 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHH
Confidence 66777 999999999999875421 111111222333333222222222222222222 22333
Q ss_pred HHHHHHHhcCCcccCchHHHHHHHHhhcccc
Q psy4458 153 YKGLLQWFTNPELIKWSGLRQLYEEELFKTS 183 (303)
Q Consensus 153 ~~~L~~~f~~~~li~~~~~~~~~~~~L~~~~ 183 (303)
+..+..++.... ++.+....|++.+..+|
T Consensus 154 ~~~la~~~~~~g--~~~~A~~~~~~al~~~P 182 (217)
T 2pl2_A 154 RSALAELYLSMG--RLDEALAQYAKALEQAP 182 (217)
T ss_dssp HHHHHHHHHHHT--CHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHHHhCC
Confidence 445656553322 45566677777776655
No 82
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=86.71 E-value=1.4 Score=37.37 Aligned_cols=99 Identities=9% Similarity=0.025 Sum_probs=71.8
Q ss_pred ccCCHHHHHHHHhcccccc--ccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCC-CCcchHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVET--YGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDD-EKDDVQELKLKYYRL 80 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet--~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~-~~~~~~e~k~~y~~~ 80 (303)
..|++++|...+...---. .+.-+.......+...+.++...|++..|..+..++-...... ++ +.......+..
T Consensus 39 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~ 116 (311)
T 3nf1_A 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK--DHPAVAATLNN 116 (311)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC--CChHHHHHHHH
Confidence 4689999999887753210 0111245667888999999999999999999999987654221 11 22334566677
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 81 MIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 81 ~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
++..+...++|.+|..+|.++...
T Consensus 117 l~~~~~~~g~~~~A~~~~~~a~~~ 140 (311)
T 3nf1_A 117 LAVLYGKRGKYKEAEPLCKRALEI 140 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHH
Confidence 899999999999999999988753
No 83
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=86.64 E-value=9.7 Score=32.52 Aligned_cols=96 Identities=9% Similarity=0.067 Sum_probs=69.5
Q ss_pred ccCCHHHHHHHHhcccccccc------CCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYG------SMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKY 77 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~------~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y 77 (303)
..|++++|...+...---... ....-.++...+..+.+++..|++..|....+++-....+ +.......
T Consensus 200 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~ 274 (359)
T 3ieg_A 200 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-----VAEYTVRS 274 (359)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-----SHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----chHHHHHH
Confidence 458899999888765311101 1112234445667789999999999999999998876521 34455666
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 78 YRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 78 ~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
+..++..+...++|.+|...|..+...
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 777899999999999999999999864
No 84
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=86.61 E-value=1.8 Score=31.55 Aligned_cols=69 Identities=12% Similarity=0.080 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy4458 33 TLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 33 ~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~ 103 (303)
+-|+++++.++..+||.+|.....++-....+... ....+...+...+..+...+++..|-..|.+++.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~--~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI--STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC--CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC--CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45789999999999999999999999766532211 0012234556678888899999999999998874
No 85
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=86.37 E-value=6.6 Score=27.92 Aligned_cols=67 Identities=12% Similarity=0.185 Sum_probs=47.6
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEe---cCCCceEEeccCCChhHHHHHHHHHHHHHHHH
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKI---DRPAGIINFARNKDPGEILNEWSASLNELMKL 283 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akI---Dq~~giV~f~~~~~~~~~l~~w~~~i~~l~~~ 283 (303)
...+++..||+.+|+|..-+-..+..|...|-+...- |+....+.... ...+.+..|...+..+.+.
T Consensus 28 ~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~--~g~~~~~~~~~~~~~~~~~ 97 (100)
T 1ub9_A 28 RRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITD--FGMEEAKRFLSSLKAVIDG 97 (100)
T ss_dssp HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECH--HHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECH--HHHHHHHHHHHHHHHHHHh
Confidence 3679999999999999999999999999999998766 43333333322 1224556666655555544
No 86
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=86.00 E-value=6.9 Score=27.77 Aligned_cols=86 Identities=14% Similarity=0.030 Sum_probs=60.8
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...--.... -...+...++++...+++..|..+.+++..... . .. ..+...+.
T Consensus 13 ~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~---~~----~~~~~l~~ 77 (136)
T 2fo7_A 13 KQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--R---SA----EAWYNLGN 77 (136)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--T---CH----HHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHcCCc------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC--C---ch----HHHHHHHH
Confidence 358999999988876321111 134567788999999999999999998876541 1 11 23345677
Q ss_pred HHHHhhhHHHHHHHHHHHHcC
Q psy4458 84 LDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+...++|.+|-..|.++...
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~ 98 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALEL 98 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 888889999998888887643
No 87
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=85.94 E-value=18 Score=31.89 Aligned_cols=85 Identities=15% Similarity=0.156 Sum_probs=60.4
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+..+--.. +.. ....+....+++..+++..|....+++-.... . + ...+..++.
T Consensus 11 ~~g~~~~A~~~~~~~~~~~----p~~--~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p--~---~----~~~~~~lg~ 75 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQE----PDN--TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP--L---L----AEAYSNLGN 75 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHC----TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---C----HHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC----CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C---c----hHHHHHHHH
Confidence 3689999999887653211 111 24566778889999999999988888765431 1 1 234556788
Q ss_pred HHHHhhhHHHHHHHHHHHHc
Q psy4458 84 LDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~ 103 (303)
.+...++|-+|-..|..+..
T Consensus 76 ~~~~~g~~~~A~~~~~~al~ 95 (388)
T 1w3b_A 76 VYKERGQLQEAIEHYRHALR 95 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 88889999999998888865
No 88
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=85.72 E-value=4 Score=35.79 Aligned_cols=25 Identities=8% Similarity=-0.068 Sum_probs=14.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 80 LMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 80 ~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
.++..+...++|.+|-..|..+...
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~al~~ 206 (365)
T 4eqf_A 182 RMSKSPVDSSVLEGVKELYLEAAHQ 206 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 3466777788888888888888754
No 89
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=85.68 E-value=1.2 Score=38.34 Aligned_cols=91 Identities=15% Similarity=0.163 Sum_probs=57.5
Q ss_pred CchHHHHHHHHhcCCcccCchHHHHHHHHhhcccc-cccccchhHHhHHHHHHHHHHHHHHHHHHhhhceeeHHHHHHHh
Q psy4458 149 EIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTS-VFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLL 227 (303)
Q Consensus 149 ~~p~~~~L~~~f~~~~li~~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~~l~~~i~ehNi~~isk~Y~~Itl~~la~ll 227 (303)
.+...-.|.+...+++ |. .|.+.++..+ ++ .....|..+++..=..++++.|++|+++.++++|
T Consensus 98 ~I~~i~~L~~~L~~~~---y~----~fW~~l~~~~~l~--------~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lL 162 (226)
T 1rz4_A 98 PIRQILYLGDLLETCH---FQ----AFWQALDENMDLL--------EGITGFEDSVRKFICHVVGITYQHIDRWLLAEML 162 (226)
T ss_dssp THHHHHHHHHHHHTTC---HH----HHHHHSCTTCHHH--------HTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCC---HH----HHHHHHhcChhHH--------HHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 4455566777888774 43 2333343332 11 0012355667776678889999999999999999
Q ss_pred C-CCHHHHHHHHHhhhhcCceEEEecCCCceEEec
Q psy4458 228 G-LPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 261 (303)
Q Consensus 228 ~-ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~ 261 (303)
| ++++++++.+.+- | =++| .+|.|.|.
T Consensus 163 g~~s~~el~~fi~~~---G---W~vd-~~g~I~~~ 190 (226)
T 1rz4_A 163 GDLSDSQLKVWMSKY---G---WSAD-ESGQIFIC 190 (226)
T ss_dssp TSCCHHHHHHHHHHH---T---CEEC-C--CEECC
T ss_pred cCCCHHHHHHHHHHC---C---CEEC-CCccEEeC
Confidence 5 8999988888772 2 1355 56677664
No 90
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=85.49 E-value=20 Score=32.07 Aligned_cols=68 Identities=18% Similarity=0.061 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchH---HHHHHH--------HHHHHHHHHHhhhHHHHHHHHHH
Q psy4458 32 VTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQ---ELKLKY--------YRLMIELDQHEGSYLATCKHYRA 100 (303)
Q Consensus 32 ~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~---e~k~~y--------~~~~~~~~~~~~~f~eaa~~y~e 100 (303)
...+...++++...|++..|..+.+++-.... + +. +....+ +...+..+...++|.+|...|..
T Consensus 94 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 94 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP---S--ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---C--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35566777778888888888887777765331 1 22 111111 22346778889999999999998
Q ss_pred HHcC
Q psy4458 101 ILTT 104 (303)
Q Consensus 101 ~~~t 104 (303)
+...
T Consensus 169 ~~~~ 172 (450)
T 2y4t_A 169 ILEV 172 (450)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
No 91
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=85.40 E-value=1.9 Score=30.73 Aligned_cols=51 Identities=16% Similarity=0.183 Sum_probs=38.7
Q ss_pred HHHHHhhhc---eeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEE
Q psy4458 208 IRVMAKYYT---RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIIN 259 (303)
Q Consensus 208 i~~isk~Y~---~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~ 259 (303)
|+.+.+-.. .+|...||+.||+|...|...|.+|-.+|.|... +...|.=.
T Consensus 15 IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~-g~~~~~W~ 68 (81)
T 1qbj_A 15 ILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE-AGTPPLWK 68 (81)
T ss_dssp HHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-SSSSCEEE
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec-CCCCCeeE
Confidence 333333455 8999999999999999999999999999998554 33334433
No 92
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=85.26 E-value=11 Score=28.90 Aligned_cols=66 Identities=8% Similarity=-0.004 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 30 EKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 30 ~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
.-.+.+...+..++..|+|..|....+++-.... . + ..++...+..+...++|-+|-.+|..++..
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~---~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH--Y---D----SRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc--c---c----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3467788899999999999999999998876542 1 1 223445788889999999999999998754
No 93
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=84.97 E-value=9.7 Score=28.06 Aligned_cols=85 Identities=11% Similarity=-0.120 Sum_probs=59.4
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...--.... -.+.+...+.++...|++..|....+++-..-. + +. ..+..++.
T Consensus 29 ~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~---~~----~~~~~la~ 93 (121)
T 1hxi_A 29 KLANLAEAALAFEAVCQKEPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLDP--K---DI----AVHAALAV 93 (121)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---CH----HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C---CH----HHHHHHHH
Confidence 458888888887765321111 245667788888889999999988888876542 1 12 13345777
Q ss_pred HHHHhhhHHHHHHHHHHHHc
Q psy4458 84 LDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~ 103 (303)
.+...++|-+|-..|..++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888999999988888865
No 94
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=84.88 E-value=11 Score=30.40 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=11.0
Q ss_pred ccCCHHHHHHHHhcc
Q psy4458 4 DEGDVTEAANIIQEL 18 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i 18 (303)
..|++++|...+...
T Consensus 91 ~~~~~~~A~~~~~~a 105 (258)
T 3uq3_A 91 KLGDLKKTIEYYQKS 105 (258)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHH
Confidence 457888888777665
No 95
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=84.63 E-value=6.8 Score=30.12 Aligned_cols=85 Identities=12% Similarity=-0.042 Sum_probs=63.0
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...---. + .-.+.+...+.++...|+|..|....+++-.... +. . ..+..++.
T Consensus 33 ~~g~~~~A~~~~~~al~~~----p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~---~----~~~~~lg~ 97 (148)
T 2vgx_A 33 QSGXYEDAHXVFQALCVLD----H--YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI--XE---P----RFPFHAAE 97 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHC----T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TC---T----HHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHcC----c--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CC---c----hHHHHHHH
Confidence 4689999999887653211 1 1145667889999999999999999999876542 12 1 12345788
Q ss_pred HHHHhhhHHHHHHHHHHHHc
Q psy4458 84 LDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~ 103 (303)
.+...++|-+|-..|..++.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 89999999999999988864
No 96
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=84.63 E-value=6.4 Score=31.43 Aligned_cols=92 Identities=12% Similarity=-0.011 Sum_probs=65.0
Q ss_pred ccCCHHHHHHHHhccc-cccccC------C---chHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHH
Q psy4458 4 DEGDVTEAANIIQELQ-VETYGS------M---EKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQEL 73 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~-vet~~~------~---~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~ 73 (303)
..|++++|...+...- ...... . ...-+...+...+.+++..++|..|..+.+++-.... . +
T Consensus 50 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~---~--- 121 (198)
T 2fbn_A 50 KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK--N---N--- 121 (198)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--T---C---
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--c---c---
Confidence 4689999998887652 111000 0 0112357888999999999999999999999876541 1 1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 74 KLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 74 k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
...+..++..+...++|.+|-..|..++..
T Consensus 122 -~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 122 -VKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 223445788889999999999999888653
No 97
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=84.23 E-value=7.7 Score=30.88 Aligned_cols=83 Identities=12% Similarity=0.046 Sum_probs=65.1
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+.... +. -...+...+.+++..|++..|....+++-.... . .. ..+...+.
T Consensus 18 ~~~~~~~A~~~~~~a~-~~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~---~~----~~~~~lg~ 79 (213)
T 1hh8_A 18 DKKDWKGALDAFSAVQ-DP--------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--H---LA----VAYFQRGM 79 (213)
T ss_dssp HTTCHHHHHHHHHTSS-SC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---CH----HHHHHHHH
T ss_pred HhCCHHHHHHHHHHHc-CC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--c---ch----HHHHHHHH
Confidence 4699999999998873 21 235788899999999999999999998876541 1 22 23445788
Q ss_pred HHHHhhhHHHHHHHHHHHHcC
Q psy4458 84 LDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+...++|.+|-..|..++..
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHcccHHHHHHHHHHHHHh
Confidence 889999999999999998764
No 98
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=84.20 E-value=7.6 Score=29.20 Aligned_cols=85 Identities=11% Similarity=-0.021 Sum_probs=63.4
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...---. + .-.+++...+.++...|++..|....+++-....+ . . ..+..++.
T Consensus 30 ~~g~~~~A~~~~~~al~~~----p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~---~----~~~~~lg~ 94 (142)
T 2xcb_A 30 QAGKWDDAQKIFQALCMLD----H--YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN--E---P----RFPFHAAE 94 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHC----T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C---T----HHHHHHHH
T ss_pred HHccHHHHHHHHHHHHHhC----C--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--C---c----HHHHHHHH
Confidence 4689999999887653211 1 12456788899999999999999999998765421 1 1 12345788
Q ss_pred HHHHhhhHHHHHHHHHHHHc
Q psy4458 84 LDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~ 103 (303)
.+...++|-+|-..|..+..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 89999999999999988864
No 99
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=84.00 E-value=7.7 Score=29.77 Aligned_cols=92 Identities=11% Similarity=0.035 Sum_probs=64.5
Q ss_pred ccCCHHHHHHHHhccc-c-ccc---cCCc-------hHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchH
Q psy4458 4 DEGDVTEAANIIQELQ-V-ETY---GSME-------KKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQ 71 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~-v-et~---~~~~-------~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~ 71 (303)
..|++.+|...+...- + .+. ..-+ ......++...+..++..|+|..|.....++-..- .. +
T Consensus 23 ~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--p~---~- 96 (162)
T 3rkv_A 23 VQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE--ET---N- 96 (162)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TT---C-
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--Cc---c-
Confidence 3588888887766531 1 000 0000 34456788999999999999999999999887653 11 1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 72 ELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 72 e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
...+...|..+...++|-+|-..|..++..
T Consensus 97 ---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 97 ---EKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 223445788899999999999999988653
No 100
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=83.82 E-value=17 Score=30.14 Aligned_cols=68 Identities=12% Similarity=0.001 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy4458 32 VTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 105 (303)
Q Consensus 32 ~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t~ 105 (303)
.+..+..+..++..|+|..|....+++-...... . .....+...+..+...++|.+|...|..++...
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 82 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH----E--WAADAQFYLARAYYQNKEYLLAASEYERFIQIY 82 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS----T--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC----c--chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence 4667889999999999999999999998765322 1 112334458888899999999999999998653
No 101
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=83.70 E-value=11 Score=28.44 Aligned_cols=35 Identities=9% Similarity=0.154 Sum_probs=32.2
Q ss_pred eeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEec
Q psy4458 218 ITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKID 252 (303)
Q Consensus 218 Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akID 252 (303)
+|.+.||+.+|+|..-|-+.|..|...|-+.-.-+
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~ 77 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQ 77 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCC
Confidence 99999999999999999999999999999976443
No 102
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.36 E-value=10 Score=35.60 Aligned_cols=70 Identities=14% Similarity=0.166 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy4458 30 EKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAIL 102 (303)
Q Consensus 30 ~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~ 102 (303)
++..+....++++...|||..|..++..+....... . +...|+.|+..+.+.+...+||..|--.+..+.
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~-~--~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS-M--EMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS-S--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc-c--cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566777888999999999999999999998766433 2 678999999999999999999999877776653
No 103
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=83.27 E-value=3.1 Score=29.35 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=31.2
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEE
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 249 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~a 249 (303)
-.+|+..||+.||+|+.-|...|..+-..|.|.-
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R 56 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEK 56 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 3599999999999999999999999999998854
No 104
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=82.92 E-value=14 Score=28.29 Aligned_cols=68 Identities=7% Similarity=-0.020 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 28 KKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 28 ~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
.....+.+...+..++..++|..|..+.+++-.... . + ..++...+..+...++|.+|-..|..++..
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~---~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP--A---N----PIYLSNRAAAYSASGQHEKAAEDAELATVV 74 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--T---C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--c---C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 346778899999999999999999999999876552 1 1 234556788889999999999999999764
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=82.89 E-value=13 Score=35.31 Aligned_cols=85 Identities=5% Similarity=-0.131 Sum_probs=48.9
Q ss_pred cCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHH
Q psy4458 5 EGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIEL 84 (303)
Q Consensus 5 ~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~ 84 (303)
.|++++|...++..--.. . .-.+.+...+.+++..|++..|....+++-.... + + ...+..++..
T Consensus 2 ~g~~~~A~~~~~~al~~~-p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~---~----~~~~~~lg~~ 66 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-P-----QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP--G---H----PEAVARLGRV 66 (568)
T ss_dssp -------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST--T---C----HHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C---C----HHHHHHHHHH
Confidence 477888888777652111 1 1135677888899999999999999988876431 1 2 2234557888
Q ss_pred HHHhhhHHHHHHHHHHHHcC
Q psy4458 85 DQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 85 ~~~~~~f~eaa~~y~e~~~t 104 (303)
+...++|-+|-..|..+...
T Consensus 67 ~~~~g~~~~A~~~~~~al~~ 86 (568)
T 2vsy_A 67 RWTQQRHAEAAVLLQQASDA 86 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhc
Confidence 88889999999999888754
No 106
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=82.65 E-value=12 Score=37.42 Aligned_cols=151 Identities=9% Similarity=0.029 Sum_probs=88.6
Q ss_pred CccCCHHHHHHHHhcc-ccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHH
Q psy4458 3 EDEGDVTEAANIIQEL-QVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLM 81 (303)
Q Consensus 3 e~~~~~~~Aa~~L~~i-~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~ 81 (303)
.+.|++++|...++.. .+.. .-.+.+...+.++...|++..|....+++-.... + +. ..+..+
T Consensus 20 ~~~G~~~eAi~~~~kAl~l~P-------~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P--~---~~----~a~~nL 83 (723)
T 4gyw_A 20 REQGNIEEAVRLYRKALEVFP-------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP--T---FA----DAYSNM 83 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCS-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---CH----HHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C---CH----HHHHHH
Confidence 4679999999888754 2221 1135677788999999999999999999876542 1 22 234457
Q ss_pred HHHHHHhhhHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHhCCCCchhhHhHHHhhhhhhcCCchHHHHHHHHhc
Q psy4458 82 IELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFT 161 (303)
Q Consensus 82 ~~~~~~~~~f~eaa~~y~e~~~t~~~~~~~~~~~~~L~~~v~~~iLs~~~~~r~~ll~~l~~~~~~~~~p~~~~L~~~f~ 161 (303)
+..+...++|.+|-.+|..++... +...........++.-+..+..-...+.+.+..+|.. ...+..|..++.
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-----P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~--~~a~~~L~~~l~ 156 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-----PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF--PDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHhhhhhHHH
Confidence 888899999999999999987532 1111111222333333333332233333333334432 334556666653
Q ss_pred CCcccCchHHHHHHHHh
Q psy4458 162 NPELIKWSGLRQLYEEE 178 (303)
Q Consensus 162 ~~~li~~~~~~~~~~~~ 178 (303)
.. -+|.+..+.|++.
T Consensus 157 ~~--g~~~~A~~~~~ka 171 (723)
T 4gyw_A 157 IV--CDWTDYDERMKKL 171 (723)
T ss_dssp HT--TCCTTHHHHHHHH
T ss_pred hc--ccHHHHHHHHHHH
Confidence 32 2455444555443
No 107
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=82.54 E-value=8.4 Score=32.62 Aligned_cols=94 Identities=7% Similarity=-0.046 Sum_probs=56.1
Q ss_pred cCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHH
Q psy4458 5 EGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIEL 84 (303)
Q Consensus 5 ~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~ 84 (303)
.|++++|...+...---. + .-...+...++++...|++..|..+.+++-......+++.........+..++..
T Consensus 172 ~~~~~~A~~~~~~al~~~----~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~ 245 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIA----P--EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245 (330)
T ss_dssp TTCHHHHHHHHHHHHTTC----T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhC----C--CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence 466666666665542111 1 1135566777778888888888888777765542211100001112345567788
Q ss_pred HHHhhhHHHHHHHHHHHHcC
Q psy4458 85 DQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 85 ~~~~~~f~eaa~~y~e~~~t 104 (303)
+...++|.+|-..|..+...
T Consensus 246 ~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 246 CRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhh
Confidence 88888888888888888653
No 108
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=82.48 E-value=8.6 Score=34.53 Aligned_cols=96 Identities=8% Similarity=0.065 Sum_probs=68.9
Q ss_pred ccCCHHHHHHHHhcccccccc------CCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYG------SMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKY 77 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~------~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y 77 (303)
..|++++|...+..+---... .+..-.+++-.+..+..+...|++..|..+.+++-.... + +.+.....
T Consensus 223 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p---~--~~~~~~~~ 297 (450)
T 2y4t_A 223 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP---S--IAEYTVRS 297 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC---S--SHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---c--chHHHHHH
Confidence 468899998888776311111 111122334456678999999999999999999876542 2 34555677
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 78 YRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 78 ~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
+..++..+...++|.+|-..|..+...
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 778899999999999999999998753
No 109
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=82.25 E-value=14 Score=27.79 Aligned_cols=44 Identities=2% Similarity=-0.102 Sum_probs=38.8
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceE
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGII 258 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV 258 (303)
...++...||+.+|++..-+-..+..|...|-+.-.-|..++-.
T Consensus 48 ~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~ 91 (142)
T 2fbi_A 48 QGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRR 91 (142)
T ss_dssp HCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred cCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCe
Confidence 45699999999999999999999999999999988877666553
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=81.81 E-value=9.6 Score=30.89 Aligned_cols=92 Identities=13% Similarity=0.138 Sum_probs=62.3
Q ss_pred ccCCHHHHHHHHhccccccccC----------CchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGS----------MEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQEL 73 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~----------~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~ 73 (303)
..|++++|...+...--..... -.......+....+.++...|++..|....+++-.... + +
T Consensus 16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~---~--- 87 (208)
T 3urz_A 16 EAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP--N---N--- 87 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---C---
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--C---C---
Confidence 4689999998887652111000 00001111223389999999999999999999876542 1 2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 74 KLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 74 k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
...+..++..+...++|-+|-.+|..++..
T Consensus 88 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 88 -VDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 233455788899999999999999999864
No 111
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=81.75 E-value=13 Score=26.96 Aligned_cols=65 Identities=9% Similarity=-0.040 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 31 KVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 31 k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
..+.+...+..++..|+|..|....+++-.... + + ...+...+..+...++|-+|-..|..++..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~---~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 67 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP--E---D----ARGYSNRAAALAKLMSFPEAIADCNKAIEK 67 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--C---C----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 456778899999999999999999998876542 1 2 244556788888999999999999998754
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=81.46 E-value=19 Score=30.84 Aligned_cols=134 Identities=14% Similarity=-0.019 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCChH
Q psy4458 33 TLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPV 112 (303)
Q Consensus 33 ~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t~~~~~~~~ 112 (303)
+..+.++..++..||+..|....+++-.... + +. ..+..++..+...+++-+|-..|..+..... +
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P--~---~~----~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p---~-- 183 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSN--Q---NG----EIGLLLAETLIALNRSEDAEAVLXTIPLQDQ---D-- 183 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--S---CH----HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC---S--
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--c---ch----hHHHHHHHHHHHCCCHHHHHHHHHhCchhhc---c--
Confidence 5678899999999999999999999876552 1 22 2344578899999999999999888754321 1
Q ss_pred HHHHHHHHHHHHHHhCCCCchhhHhHHHhhhhhhcCCchHHHHHHHHhcCCcccCchHHHHHHHHhhccccc
Q psy4458 113 QRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSV 184 (303)
Q Consensus 113 ~~~~~L~~~v~~~iLs~~~~~r~~ll~~l~~~~~~~~~p~~~~L~~~f~~~~li~~~~~~~~~~~~L~~~~~ 184 (303)
.....+...+.+.-..........+...+..+|. .......|...+.... ++.+....|...|+.+|-
T Consensus 184 ~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~--~~~~~~~la~~l~~~g--~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 184 TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE--DAALATQLALQLHQVG--RNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc--cHHHHHHHHHHHHHcc--cHHHHHHHHHHHHhcccc
Confidence 1122222233232233333334444444555553 2334556666664432 566777888888887764
No 113
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=81.40 E-value=11 Score=29.84 Aligned_cols=85 Identities=4% Similarity=-0.222 Sum_probs=41.2
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhh-cchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAK-KDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMI 82 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~-~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~ 82 (303)
..|++++|...+...--.... -...+...++++... |++..|..+.+++.. .....+ . ...+...+
T Consensus 54 ~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~--~----~~~~~~l~ 120 (225)
T 2vq2_A 54 YLKVNDKAQESFRQALSIKPD------SAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPT--P----YIANLNKG 120 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSC--H----HHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcc--h----HHHHHHHH
Confidence 346666666666554211100 123445566666666 666666666666654 101111 1 12223345
Q ss_pred HHHHHhhhHHHHHHHHHHH
Q psy4458 83 ELDQHEGSYLATCKHYRAI 101 (303)
Q Consensus 83 ~~~~~~~~f~eaa~~y~e~ 101 (303)
..+...++|.+|-..|.++
T Consensus 121 ~~~~~~~~~~~A~~~~~~~ 139 (225)
T 2vq2_A 121 ICSAKQGQFGLAEAYLKRS 139 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 5555555665555555443
No 114
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=81.35 E-value=6.5 Score=37.52 Aligned_cols=98 Identities=9% Similarity=0.022 Sum_probs=67.5
Q ss_pred ccCCHHHHHHHHhccccccccCCchH--HHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKK--EKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLM 81 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~--~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~ 81 (303)
.+|++++|..++...---.-..++.. .-+..+-.++.+|...|+|..|..+..++-......-|++..+.-.. +.-+
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~-l~nL 399 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA-VMRA 399 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH-HHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH-HHHH
Confidence 57999999887755421111233333 46677788899999999999999999988654422223324444333 3446
Q ss_pred HHHHHHhhhHHHHHHHHHHHH
Q psy4458 82 IELDQHEGSYLATCKHYRAIL 102 (303)
Q Consensus 82 ~~~~~~~~~f~eaa~~y~e~~ 102 (303)
|..|...++|.+|-..|..++
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 777888999999999988885
No 115
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=81.27 E-value=13 Score=28.01 Aligned_cols=44 Identities=7% Similarity=-0.012 Sum_probs=38.3
Q ss_pred hhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 214 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 214 ~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
....++...||+.+|+|+.-+-..+..|...|-+.-.-|..++-
T Consensus 49 ~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R 92 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRR 92 (146)
T ss_dssp CSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBC
T ss_pred cCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccC
Confidence 45689999999999999999999999999999998877655443
No 116
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=81.26 E-value=11 Score=33.25 Aligned_cols=97 Identities=9% Similarity=-0.010 Sum_probs=69.4
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...-- ....-+.............++...|++..|.....++-...... + +...........+.
T Consensus 26 ~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~--~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALE-ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-D--VWHYALWSLIQQSE 101 (373)
T ss_dssp HTTCHHHHHHHHHHHHH-TCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-T--CHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc-C--cHHHHHHHHHHHHH
Confidence 36889999888765311 11222233455667778888999999999999999988766333 3 33344555667888
Q ss_pred HHHHhhhHHHHHHHHHHHHcC
Q psy4458 84 LDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+...++|-+|-..|.++...
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~ 122 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQL 122 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999988753
No 117
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=81.10 E-value=7.3 Score=36.54 Aligned_cols=99 Identities=13% Similarity=0.078 Sum_probs=68.3
Q ss_pred ccCCHHHHHHHHhccccccccCCchH--HHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKK--EKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLM 81 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~--~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~ 81 (303)
..|++++|..++...---.-..++.. .-+..+-.++.+|...|+|..|..+..|+-......-|++..+.-..|. -+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~-nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL-KL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH-HH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH-HH
Confidence 45889999888765421111223332 4566677889999999999999999999865543323333455544444 47
Q ss_pred HHHHHHhhhHHHHHHHHHHHHc
Q psy4458 82 IELDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 82 ~~~~~~~~~f~eaa~~y~e~~~ 103 (303)
|..|...++|.+|-..|..++.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHH
Confidence 7888999999999999988853
No 118
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=81.06 E-value=5.1 Score=27.10 Aligned_cols=34 Identities=6% Similarity=0.192 Sum_probs=31.5
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEE
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 249 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~a 249 (303)
..++.+.||+.+|+|...|.+.|..|..+|.|..
T Consensus 24 ~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 24 GPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp SCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 4599999999999999999999999999999754
No 119
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=80.97 E-value=17 Score=27.99 Aligned_cols=86 Identities=8% Similarity=-0.011 Sum_probs=49.7
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...--... .-.+.+...+++++..|++..|..+..++-....+ +. ..+...+.
T Consensus 22 ~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~~----~~~~~la~ 86 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP------QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-----NA----ELYAALAT 86 (177)
T ss_dssp -----CCCCHHHHHHHHHCC------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-----CH----HHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CH----HHHHHHHH
Confidence 45677777666655321111 11356777888888888888888888887765521 11 12333455
Q ss_pred H-HHHhhhH--HHHHHHHHHHHcC
Q psy4458 84 L-DQHEGSY--LATCKHYRAILTT 104 (303)
Q Consensus 84 ~-~~~~~~f--~eaa~~y~e~~~t 104 (303)
. +...++| -+|-..|..++..
T Consensus 87 ~l~~~~~~~~~~~A~~~~~~al~~ 110 (177)
T 2e2e_A 87 VLYYQASQHMTAQTRAMIDKALAL 110 (177)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCcchHHHHHHHHHHHHh
Confidence 5 5566777 7777777777643
No 120
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=80.57 E-value=16 Score=27.53 Aligned_cols=43 Identities=12% Similarity=0.070 Sum_probs=38.6
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
...++...||+.+|+|..-+-..+..|...|-+.-.-|..++-
T Consensus 45 ~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r 87 (145)
T 2a61_A 45 EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRR 87 (145)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCc
Confidence 4579999999999999999999999999999998887766664
No 121
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=80.52 E-value=8.6 Score=29.22 Aligned_cols=42 Identities=7% Similarity=-0.004 Sum_probs=38.0
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
..+|...||+.+|+|..-+=..+..|...|-+.-.-|..++-
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~r 81 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGERK 81 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCce
Confidence 579999999999999999999999999999998887766654
No 122
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.46 E-value=7.2 Score=36.24 Aligned_cols=68 Identities=9% Similarity=-0.009 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy4458 35 ILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 105 (303)
Q Consensus 35 ~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t~ 105 (303)
-.+.++++++.|||..|...++++...+... + +....+.-+.+.+++|...+|+..+-..|..+-.+.
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-d--d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKL-D--DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-S--CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-c--cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 3488999999999999999999999888443 2 457778999999999999999999887777775443
No 123
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=80.40 E-value=12 Score=25.88 Aligned_cols=65 Identities=9% Similarity=-0.069 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 31 KVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 31 k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
+.+.+..+++.++..|+|..|.....++-.... . + ...+...+..+...++|.+|...|..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~---~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP--H---N----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--C---c----HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 567788999999999999999999998876542 1 2 224455788888899999999999888754
No 124
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=80.27 E-value=15 Score=27.47 Aligned_cols=43 Identities=9% Similarity=0.061 Sum_probs=38.2
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
...++...||+.+|++..-+-..+..|...|-+.-.-|..++-
T Consensus 50 ~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R 92 (140)
T 2nnn_A 50 TGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGR 92 (140)
T ss_dssp HSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCC
Confidence 3479999999999999999999999999999998877766654
No 125
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=80.11 E-value=12 Score=28.65 Aligned_cols=42 Identities=2% Similarity=0.041 Sum_probs=37.4
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCc
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 256 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~g 256 (303)
...++...||+.+|++..-+-..+..|...|-+.-.-|..++
T Consensus 49 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 90 (155)
T 1s3j_A 49 HGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDR 90 (155)
T ss_dssp HSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCC
Confidence 567999999999999999999999999999999877765554
No 126
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=79.96 E-value=12 Score=28.04 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=38.3
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
...++...||+.+|++..-+-..+..|...|-+.-..|..++-
T Consensus 46 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R 88 (138)
T 1jgs_A 46 AACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKR 88 (138)
T ss_dssp HSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSS
T ss_pred cCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCc
Confidence 4568999999999999999999999999999998887766654
No 127
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=79.79 E-value=11 Score=26.60 Aligned_cols=64 Identities=13% Similarity=-0.015 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy4458 31 KVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 31 k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~ 103 (303)
..+.+...+..++..|+|..|..+..++-.... . + ...+..++..+...++|.+|...|..+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~---~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDP--T---N----MTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--c---c----HHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 456778899999999999999999999876541 1 2 23445578888899999999999988864
No 128
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=79.69 E-value=27 Score=32.64 Aligned_cols=50 Identities=4% Similarity=-0.127 Sum_probs=24.2
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhh
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKIN 59 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~ 59 (303)
..|++++|.+.+..+.--. . .-.+.+...+.++...|++..|..+.+++.
T Consensus 385 ~~g~~~~A~~~~~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 434 (597)
T 2xpi_A 385 CVNKISEARRYFSKSSTMD-P-----QFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3466666666665442100 0 012234445555555555555555555544
No 129
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=79.65 E-value=15 Score=26.67 Aligned_cols=58 Identities=9% Similarity=0.049 Sum_probs=41.0
Q ss_pred eeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEeccCCChhHHHHHHHHHHH
Q psy4458 218 ITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLN 278 (303)
Q Consensus 218 Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~w~~~i~ 278 (303)
++...||..+|+|+.-+...+..+...|-|.-. .+|+...+.....-+.+..|..-+.
T Consensus 21 ~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~---~~~~~LT~kG~~~l~~l~~~~~~l~ 78 (95)
T 1r7j_A 21 SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE---GKQYMLTKKGEELLEDIRKFNEMRK 78 (95)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE---CCeeEEChhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988765 3454444433222233444443333
No 130
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=79.36 E-value=9.4 Score=26.94 Aligned_cols=62 Identities=10% Similarity=-0.047 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy4458 33 TLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 33 ~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~ 103 (303)
+.+...+.+++..|+|..|....+++-....+ . . ..+..++..+...++|-+|-..|..++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~---~----~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD--Y---V----GTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--C---T----HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--c---H----HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56778899999999999999999998765422 1 1 1455688999999999999999988864
No 131
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=79.28 E-value=23 Score=32.15 Aligned_cols=161 Identities=14% Similarity=0.085 Sum_probs=92.8
Q ss_pred ccCCHHHHHHHHhcccc------ccccCCc--hHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHH
Q psy4458 4 DEGDVTEAANIIQELQV------ETYGSME--KKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKL 75 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~v------et~~~~~--~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~ 75 (303)
..|++++|...+...-- +....-+ .......+...++++...|++..|..+.+++-.... . .
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~------~----~ 270 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP------R----V 270 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC------C----H
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc------c----H
Confidence 47899999998877642 1111111 245677888999999999999999999998875431 2 3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHhCCCCchhhHhHHHhhhhhhcCCchHHHH
Q psy4458 76 KYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKG 155 (303)
Q Consensus 76 ~y~~~~~~~~~~~~~f~eaa~~y~e~~~t~~~~~~~~~~~~~L~~~v~~~iLs~~~~~r~~ll~~l~~~~~~~~~p~~~~ 155 (303)
..+...+..+...++|.+|-..|..+...... +. . .....+.++.-+..+..-...+...+..+|. ....+..
T Consensus 271 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~-~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~ 343 (514)
T 2gw1_A 271 NSYIYMALIMADRNDSTEYYNYFDKALKLDSN--NS-S--VYYHRGQMNFILQNYDQAGKDFDKAKELDPE--NIFPYIQ 343 (514)
T ss_dssp HHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT--CT-H--HHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS--CSHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC--CH-H--HHHHHHHHHHHhCCHHHHHHHHHHHHHhChh--hHHHHHH
Confidence 44556788888889999999888888765321 11 1 1112233333333333222222222222332 2234455
Q ss_pred HHHHhcCCcccCchHHHHHHHHhhcccc
Q psy4458 156 LLQWFTNPELIKWSGLRQLYEEELFKTS 183 (303)
Q Consensus 156 L~~~f~~~~li~~~~~~~~~~~~L~~~~ 183 (303)
+...+.... ++......|...+..++
T Consensus 344 l~~~~~~~~--~~~~A~~~~~~~~~~~~ 369 (514)
T 2gw1_A 344 LACLAYREN--KFDDCETLFSEAKRKFP 369 (514)
T ss_dssp HHHHTTTTT--CHHHHHHHHHHHHHHST
T ss_pred HHHHHHHcC--CHHHHHHHHHHHHHHcc
Confidence 555554332 45555556666555443
No 132
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=79.26 E-value=2.8 Score=32.86 Aligned_cols=46 Identities=11% Similarity=0.001 Sum_probs=37.6
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEE--EecCCCceEEe
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA--KIDRPAGIINF 260 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~a--kIDq~~giV~f 260 (303)
..-.|.+.||+.+|+|+.++.+.|.+++..|-|.= +.|..++....
T Consensus 49 ~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ 96 (135)
T 2v79_A 49 SYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEK 96 (135)
T ss_dssp CCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEE
Confidence 35579999999999999999999999999998854 56665544433
No 133
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=79.18 E-value=20 Score=30.85 Aligned_cols=27 Identities=4% Similarity=-0.171 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHhhh
Q psy4458 34 LILEQMRLCLAKKDYIRTQIISKKINT 60 (303)
Q Consensus 34 ~~L~~~rL~L~~~D~~~a~~~~~ki~~ 60 (303)
.+...+.++...|++..|.....++-.
T Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 134 ALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444455555555555555555555443
No 134
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=79.03 E-value=25 Score=28.77 Aligned_cols=135 Identities=11% Similarity=0.096 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCChH
Q psy4458 33 TLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPV 112 (303)
Q Consensus 33 ~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t~~~~~~~~ 112 (303)
+..+..+..++..|++..|..+.+++-........ .+..++..+...++|.+|-..|..+...+. ++.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~ 71 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY---------IYNRRAVCYYELAKYDLAQKDIETYFSKVN---ATK 71 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST---------THHHHHHHHHHTTCHHHHHHHHHHHHTTSC---TTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhccC---chh
Confidence 45678899999999999999999998765422211 234477788899999999999999987442 221
Q ss_pred HHHHHH-HHHHHHHHhCCCCchhhHhHHHhhhhhhcCCchHHHHHHHHhcCCcccCchHHHHHHHHhhcccc
Q psy4458 113 QRHAVL-QNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTS 183 (303)
Q Consensus 113 ~~~~~L-~~~v~~~iLs~~~~~r~~ll~~l~~~~~~~~~p~~~~L~~~f~~~~li~~~~~~~~~~~~L~~~~ 183 (303)
-...++ ....++.-+..+..-..-+...+..+|.. ...+..+...+.... ++......|.+.+..++
T Consensus 72 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~ 139 (272)
T 3u4t_A 72 AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR--LDMYGQIGSYFYNKG--NFPLAIQYMEKQIRPTT 139 (272)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--THHHHHHHHHHHHTT--CHHHHHHHHGGGCCSSC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcc--CHHHHHHHHHHHhhcCC
Confidence 111222 22333333332222222222222234432 334566777664432 46666667766665544
No 135
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=78.92 E-value=6.3 Score=29.32 Aligned_cols=42 Identities=10% Similarity=-0.032 Sum_probs=37.9
Q ss_pred ceeeHHHHHHHh-CCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 216 TRITLQRMCDLL-GLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 216 ~~Itl~~la~ll-~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
..+++..||+.+ |++..-+-..|..|...|-|....|..++-
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r 76 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPP 76 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSC
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCC
Confidence 568999999999 999999999999999999998888766554
No 136
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=78.88 E-value=24 Score=32.97 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=41.2
Q ss_pred CccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhc
Q psy4458 3 EDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 62 (303)
Q Consensus 3 e~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~ 62 (303)
...|++++|.+++..+.-. ......+...+..+...|++..|..+.+++....
T Consensus 283 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 335 (597)
T 2xpi_A 283 SHEDELRRAEDYLSSINGL-------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID 335 (597)
T ss_dssp TTHHHHHHHHHHHHTSTTG-------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cCcchHHHHHHHHHHhhcC-------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC
Confidence 3568889999998876521 2346778889999999999999999998886543
No 137
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=78.82 E-value=11 Score=28.71 Aligned_cols=41 Identities=7% Similarity=0.084 Sum_probs=34.7
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCc
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 256 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~g 256 (303)
..++...||+.+|+++.-+-..+..|...|-|.-.-|..++
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~ 90 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDR 90 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----C
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccC
Confidence 68999999999999999999999999999999877755444
No 138
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=78.57 E-value=42 Score=31.10 Aligned_cols=85 Identities=9% Similarity=-0.037 Sum_probs=59.8
Q ss_pred ccCCH-HHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHH
Q psy4458 4 DEGDV-TEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMI 82 (303)
Q Consensus 4 ~~~~~-~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~ 82 (303)
..|++ ++|...+...--.. . .-.+.+...+.++...|++..|....+++-... | + ...+..++
T Consensus 114 ~~g~~~~~A~~~~~~al~~~-p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p-~----~~~~~~lg 177 (474)
T 4abn_A 114 VTPDYSPEAEVLLSKAVKLE-P-----ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-----K-N----KVSLQNLS 177 (474)
T ss_dssp SSSSCCHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-----C-C----HHHHHHHH
T ss_pred hccccHHHHHHHHHHHHhhC-C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----C-C----HHHHHHHH
Confidence 45777 78877776542111 1 114567788888888899999988888886543 1 2 14455677
Q ss_pred HHHHHh---------hhHHHHHHHHHHHHcC
Q psy4458 83 ELDQHE---------GSYLATCKHYRAILTT 104 (303)
Q Consensus 83 ~~~~~~---------~~f~eaa~~y~e~~~t 104 (303)
..+... ++|.+|-..|.+++..
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence 777888 9999999999999864
No 139
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=78.50 E-value=15 Score=27.58 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=36.4
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
..++...||+.+|+++.-+-..+.+|...|-|.-.-|..++-
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R 87 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTR 87 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--C
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCC
Confidence 489999999999999999999999999999998877666554
No 140
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=78.49 E-value=18 Score=31.36 Aligned_cols=89 Identities=9% Similarity=-0.059 Sum_probs=59.3
Q ss_pred CccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHH
Q psy4458 3 EDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMI 82 (303)
Q Consensus 3 e~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~ 82 (303)
...|++++|...+...---..... ..+.+...+.++...|++..|..+.+++-....+ +. ..+..++
T Consensus 188 ~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~----~~~~~l~ 254 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAHQNGDMI----DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-----DY----SLWNRLG 254 (365)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCSSC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CH----HHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcCcc----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CH----HHHHHHH
Confidence 456778888877776532111111 2346677788888889999988888888765421 11 2345577
Q ss_pred HHHHHhhhHHHHHHHHHHHHcC
Q psy4458 83 ELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 83 ~~~~~~~~f~eaa~~y~e~~~t 104 (303)
..+...++|.+|-..|..++..
T Consensus 255 ~~~~~~g~~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 255 ATLANGDRSEEAVEAYTRALEI 276 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc
Confidence 7788888888888888888754
No 141
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=78.05 E-value=10 Score=28.63 Aligned_cols=42 Identities=7% Similarity=0.030 Sum_probs=37.0
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
..++...||+.+|++..-+=..|..|...|-+.-.-|..++-
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R 93 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDER 93 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCC
Confidence 579999999999999999999999999999997766665554
No 142
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=77.94 E-value=14 Score=27.88 Aligned_cols=42 Identities=7% Similarity=-0.039 Sum_probs=37.6
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCc
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 256 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~g 256 (303)
...++...||+.+|+|..-+-..+..|...|-+.-.-|..++
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 89 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDR 89 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCC
Confidence 678999999999999999999999999999999877765544
No 143
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=77.93 E-value=14 Score=27.68 Aligned_cols=44 Identities=11% Similarity=0.026 Sum_probs=39.3
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceE
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGII 258 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV 258 (303)
...++...||+.+|+|..-+-..+..|...|-+.-.-|..++-.
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~ 84 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRR 84 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcee
Confidence 46799999999999999999999999999999988877766653
No 144
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=77.68 E-value=20 Score=26.94 Aligned_cols=67 Identities=4% Similarity=-0.116 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 29 KEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 29 ~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
....+++..+++.++..|++..|....+++-.... + + ...+...+..+...++|.+|...|..+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~--~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 71 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADA---F--D----VDVALHLGIAYVKTGAVDRGTELLERSLAD 71 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS---C--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc---c--C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 35678889999999999999999999988765431 1 2 234456788888999999999999998754
No 145
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=77.38 E-value=9.4 Score=35.64 Aligned_cols=98 Identities=9% Similarity=0.060 Sum_probs=66.8
Q ss_pred ccCCHHHHHHHHhcc---ccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQEL---QVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRL 80 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i---~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~ 80 (303)
.+|++++|....+.. ...+.|.-. -.-+..+-..+.+|...|+|..|..+-.|+-......-|++..+.-..|. -
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h-~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~-n 376 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDIN-IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM-K 376 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTS-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH-H
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccc-hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH-H
Confidence 368888888776543 222233211 14677778889999999999999999998865542222332444444444 4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHc
Q psy4458 81 MIELDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 81 ~~~~~~~~~~f~eaa~~y~e~~~ 103 (303)
+|..|...++|.+|-..|..++.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 67778889999999998888853
No 146
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=77.38 E-value=31 Score=28.88 Aligned_cols=27 Identities=0% Similarity=-0.245 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHhh
Q psy4458 33 TLILEQMRLCLAKKDYIRTQIISKKIN 59 (303)
Q Consensus 33 ~~~L~~~rL~L~~~D~~~a~~~~~ki~ 59 (303)
+.+...++++...|++..|.....++-
T Consensus 90 ~~~~~la~~~~~~~~~~~A~~~~~~~~ 116 (327)
T 3cv0_A 90 AVHAALAVSHTNEHNANAALASLRAWL 116 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555666666666666666666554
No 147
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=77.13 E-value=8.7 Score=30.04 Aligned_cols=86 Identities=10% Similarity=0.028 Sum_probs=53.6
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...---. + .-.+++...+.++...|+|..|....+++-....+. . ..+..++.
T Consensus 48 ~~g~~~eA~~~~~~al~~~----P--~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~-----~----~~~~~lg~ 112 (151)
T 3gyz_A 48 NKGRIEEAEVFFRFLCIYD----F--YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-----Y----TPVFHTGQ 112 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC----T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC-----C----HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC----C--CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC-----c----HHHHHHHH
Confidence 3577777777776542111 0 113456667777777788888887777776654221 1 12334677
Q ss_pred HHHHhhhHHHHHHHHHHHHcC
Q psy4458 84 LDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+...++|-+|-.+|..+...
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777788888888888777653
No 148
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=77.01 E-value=16 Score=27.81 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=36.2
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
...++...||+.+|++..-+-..+..|...|-+.-.-|..++-
T Consensus 54 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R 96 (150)
T 2rdp_A 54 EGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRR 96 (150)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcc
Confidence 4579999999999999999999999999999998877665554
No 149
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=76.85 E-value=17 Score=27.41 Aligned_cols=43 Identities=9% Similarity=0.098 Sum_probs=37.6
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
...++.+.||+.+|+|..-+-..+..|...|-+.-.-|..++-
T Consensus 41 ~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R 83 (144)
T 1lj9_A 41 NPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKK 83 (144)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTT
T ss_pred CcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCc
Confidence 3579999999999999999999999999999998877665543
No 150
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=76.74 E-value=14 Score=25.42 Aligned_cols=61 Identities=11% Similarity=0.127 Sum_probs=47.6
Q ss_pred HHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 36 LEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 36 L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
+..++.++..|+|..|....+++-.... . +.. ..+..++..+...++|.+|-..|..++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p--~---~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEP--V---GKD---EAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS--S---THH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC--C---cHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5678889999999999999999876541 1 221 14556788889999999999999998754
No 151
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=76.35 E-value=14 Score=28.76 Aligned_cols=43 Identities=14% Similarity=0.116 Sum_probs=36.4
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
...++...||+.+|+++.-+=..+..|...|-|.-.-|..++-
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR 104 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRR 104 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---C
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCC
Confidence 3679999999999999999999999999999998877665553
No 152
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=76.29 E-value=21 Score=26.39 Aligned_cols=66 Identities=9% Similarity=-0.088 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 30 EKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 30 ~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
+..+.+-.....++..|||..|....+++-.... . + ...+...+..+...++|.+|-..|..++..
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p--~---~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 76 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP--E---N----AILYSNRAACLTKLMEFQRALDDCDTCIRL 76 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C---C----HHHHHHHhhHHHhhccHHHHHHHHHHHHHh
Confidence 3455666788999999999999999998875442 1 1 234556788888999999999999988753
No 153
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=76.01 E-value=18 Score=28.41 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=38.1
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
...++...||+.+|++..-+=..|..|...|-|.-..|..++-
T Consensus 57 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR 99 (168)
T 2nyx_A 57 HGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRR 99 (168)
T ss_dssp HCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSS
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCCC
Confidence 4579999999999999999999999999999998877765554
No 154
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=75.90 E-value=13 Score=27.90 Aligned_cols=43 Identities=5% Similarity=0.131 Sum_probs=37.6
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
...++...||+.+|+|+.-+-..+..|...|-+.-.-|..++-
T Consensus 45 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r 87 (139)
T 3bja_A 45 SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQR 87 (139)
T ss_dssp SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTT
T ss_pred cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCCc
Confidence 4579999999999999999999999999999998776665544
No 155
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=75.50 E-value=25 Score=27.09 Aligned_cols=44 Identities=9% Similarity=0.123 Sum_probs=36.9
Q ss_pred hhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 214 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 214 ~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
+-..++.+.||+.++++..-+=..+.+|...|-+.-.-|..++-
T Consensus 48 ~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR 91 (147)
T 4b8x_A 48 KSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGR 91 (147)
T ss_dssp GGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcCc
Confidence 34569999999999999999999999999999999888877765
No 156
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=75.49 E-value=15 Score=28.08 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=36.9
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCc
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 256 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~g 256 (303)
...++...||+.+|++..-+-..+..|...|-+.-.-|..++
T Consensus 52 ~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~ 93 (152)
T 3bj6_A 52 TPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHA 93 (152)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSST
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccc
Confidence 457999999999999999999999999999999877665444
No 157
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=75.41 E-value=6.1 Score=30.40 Aligned_cols=82 Identities=9% Similarity=-0.099 Sum_probs=60.1
Q ss_pred CccCCHHHHHHHHhcc-ccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHH
Q psy4458 3 EDEGDVTEAANIIQEL-QVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLM 81 (303)
Q Consensus 3 e~~~~~~~Aa~~L~~i-~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~ 81 (303)
...|++++|.+.+... .+.. .-.+.+...+.++...|++..|....+++-.... + +.+ .+...
T Consensus 42 ~~~~~~~~A~~~~~~al~~~p-------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~---~~~----~~~~l 105 (150)
T 4ga2_A 42 YEAKEYDLAKKYICTYINVQE-------RDPKAHRFLGLLYELEENTDKAVECYRRSVELNP--T---QKD----LVLKI 105 (150)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---CHH----HHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC--C---CHH----HHHHH
Confidence 3568999999988765 2221 1246778889999999999999999999876542 1 222 23447
Q ss_pred HHHHHHhhhHHHHHHHHHH
Q psy4458 82 IELDQHEGSYLATCKHYRA 100 (303)
Q Consensus 82 ~~~~~~~~~f~eaa~~y~e 100 (303)
+..+...+++.+|++.|.+
T Consensus 106 a~~~~~~~~~~~aa~~~~~ 124 (150)
T 4ga2_A 106 AELLCKNDVTDGRAKYWVE 124 (150)
T ss_dssp HHHHHHHCSSSSHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHH
Confidence 7888888999999988754
No 158
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=75.16 E-value=20 Score=31.54 Aligned_cols=88 Identities=9% Similarity=-0.019 Sum_probs=65.0
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+..+.... + .+. ...-.+.+++..++|..|...+.++.... +..+...-+.+.+.
T Consensus 114 ~~g~y~eA~~~l~~~~~~~----p--~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-------d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 114 AQGNYADAMEALEAAPVAG----S--EHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-------DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHTCHHHHHHHHTSSCCTT----C--HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-------CHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhcC----C--chH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-------CcccHHHHHHHHHH
Confidence 4689999999999987521 1 333 45566679999999999999997553311 12233444556899
Q ss_pred HHHHhhhHHHHHHHHHHHHcCC
Q psy4458 84 LDQHEGSYLATCKHYRAILTTP 105 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t~ 105 (303)
.+...++|-+|-.+|..+...+
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~ 201 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSP 201 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTST
T ss_pred HHHHCCCHHHHHHHHHHHhcCC
Confidence 9999999999999999997544
No 159
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=75.13 E-value=16 Score=31.25 Aligned_cols=85 Identities=8% Similarity=-0.112 Sum_probs=63.4
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...--... .-..++...+.+++..|+|..|....+++-.... + +. ..+..+|.
T Consensus 16 ~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~--~~----~~~~~lg~ 80 (281)
T 2c2l_A 16 VGRKYPEAAACYGRAITRNP------LVAVYYTNRALCYLKMQQPEQALADCRRALELDG---Q--SV----KAHFFLGQ 80 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHCS------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT---T--CH----HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---C--CH----HHHHHHHH
Confidence 46899999998876532111 1246788899999999999999999998876431 1 22 23445788
Q ss_pred HHHHhhhHHHHHHHHHHHHc
Q psy4458 84 LDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~ 103 (303)
.+...++|.+|-..|..++.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88999999999999988864
No 160
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=74.83 E-value=28 Score=31.49 Aligned_cols=86 Identities=8% Similarity=-0.053 Sum_probs=67.1
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...--.. + ....+...+..++..|++..|....+++-.... + +. ..+...+.
T Consensus 18 ~~g~~~~A~~~~~~al~~~----p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~---~~----~~~~~l~~ 81 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELK----E---DPVFYSNLSACYVSVGDLKKVVEMSTKALELKP--D---YS----KVLLRRAS 81 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHC----C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS--C---CH----HHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcC----c---cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh--H---HH----HHHHHHHH
Confidence 4689999999988774322 1 156788899999999999999999999876542 1 22 34455888
Q ss_pred HHHHhhhHHHHHHHHHHHHcCC
Q psy4458 84 LDQHEGSYLATCKHYRAILTTP 105 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t~ 105 (303)
.+...++|.+|-..|..+....
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG 103 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS
T ss_pred HHHHHhhHHHHHHHHHHHHhcC
Confidence 8999999999999999988654
No 161
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=74.82 E-value=14 Score=30.08 Aligned_cols=71 Identities=13% Similarity=0.066 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy4458 33 TLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 33 ~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~ 103 (303)
=.++++++-.+..+.|..|+...+.+-....++.+.-..+.+..-..+.+..+-++++|..|...|..++.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34789999999999999999999997665422211002566667777899999999999999999999864
No 162
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=74.79 E-value=8.9 Score=26.58 Aligned_cols=34 Identities=6% Similarity=0.046 Sum_probs=31.8
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEE
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 249 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~a 249 (303)
..++.+.||+.+|+|..-+-..+..|...|.|..
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4699999999999999999999999999999874
No 163
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=74.75 E-value=32 Score=27.85 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=17.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 80 LMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 80 ~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
..+.++...++|.+|...|..++..
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~ 176 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRD 176 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 4566667777777777777777654
No 164
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=74.65 E-value=21 Score=31.47 Aligned_cols=92 Identities=12% Similarity=0.031 Sum_probs=65.9
Q ss_pred ccCCHHHHHHHHhcc-ccccc-cCCc-------hHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHH
Q psy4458 4 DEGDVTEAANIIQEL-QVETY-GSME-------KKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELK 74 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i-~vet~-~~~~-------~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k 74 (303)
..|++++|...+... ..... ...+ ...+...++..+.+++..++|..|....+++-.... ..
T Consensus 159 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--~~------- 229 (336)
T 1p5q_A 159 KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS--NN------- 229 (336)
T ss_dssp HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC-------
T ss_pred HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--Cc-------
Confidence 458889998877654 22111 1111 123368899999999999999999999999977542 11
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 75 LKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 75 ~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
...+...+..+...++|-+|-..|..++..
T Consensus 230 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 230 EKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 223445788899999999999999998754
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=74.64 E-value=21 Score=25.53 Aligned_cols=64 Identities=8% Similarity=0.017 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 35 ILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 35 ~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+..+..++..|+|..|....+++-....+. . .....+...+..+...++|-+|-..|..++..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~ 68 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNG----V--YTPNALYWLGESYYATRNFQLAEAQFRDLVSR 68 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS----T--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC----c--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4677889999999999999999987655322 1 11233445788889999999999999998764
No 166
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=74.38 E-value=19 Score=27.41 Aligned_cols=75 Identities=15% Similarity=0.124 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccC---CCCcch------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy4458 30 EKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFD---DEKDDV------QELKLKYYRLMIELDQHEGSYLATCKHYRA 100 (303)
Q Consensus 30 ~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~---~~~~~~------~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e 100 (303)
...+.+...+..++..|+|..|.....++-..+.. .+.|.+ .......+...+..+...++|-+|-..|..
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45677889999999999999999888888665311 001101 233345666788889999999999999998
Q ss_pred HHcC
Q psy4458 101 ILTT 104 (303)
Q Consensus 101 ~~~t 104 (303)
++..
T Consensus 89 al~~ 92 (162)
T 3rkv_A 89 VLKR 92 (162)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8754
No 167
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=74.31 E-value=24 Score=30.15 Aligned_cols=137 Identities=7% Similarity=-0.085 Sum_probs=76.5
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...--...+ -.+..+..+++++..|++..|...++++-.... + ... .....+.
T Consensus 129 ~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p---~--~~~----~~~~~~~ 193 (287)
T 3qou_A 129 QESNYTDALPLLXDAWQLSNQ------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ---D--TRY----QGLVAQI 193 (287)
T ss_dssp HTTCHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC---S--HHH----HHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCc------chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc---c--hHH----HHHHHHH
Confidence 468999999988876322111 246778889999999999999999998865431 1 111 1112333
Q ss_pred HHHHhhhHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHhCCCCchhhHhHHHhhhhhhcCCchHHHHHHHHh
Q psy4458 84 LDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWF 160 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t~~~~~~~~~~~~~L~~~v~~~iLs~~~~~r~~ll~~l~~~~~~~~~p~~~~L~~~f 160 (303)
.+...+++.+|...|..+..... ......+..+.++.-...+..-...+...+..+|....-.....|...|
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P-----~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENP-----EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHhhcccCccHHHHHHHHhcCC-----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 34556667777777777764321 1111222333333333333333433444444455443333445555555
No 168
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=74.26 E-value=14 Score=29.82 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=35.8
Q ss_pred hhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceE---EEecCC
Q psy4458 214 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT---AKIDRP 254 (303)
Q Consensus 214 ~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~---akIDq~ 254 (303)
--.++++..||+.+|+|+.-+-..+.+|...|.|. +.+|+.
T Consensus 28 ~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 28 KDARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTT
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHH
Confidence 34579999999999999999999999999999884 467765
No 169
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=74.15 E-value=16 Score=28.43 Aligned_cols=43 Identities=9% Similarity=0.136 Sum_probs=38.5
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
...++...||+.+|+++.-+=..|..|...|-|.-.-|..++-
T Consensus 58 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR 100 (162)
T 3k0l_A 58 KPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGR 100 (162)
T ss_dssp CTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCC
Confidence 4579999999999999999999999999999998887766654
No 170
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=74.11 E-value=20 Score=27.19 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=34.6
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
...++...||+.+|++..-+-..+..|...|-+.-.-|..++-
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R 90 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGR 90 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCC
Confidence 5689999999999999999999999999999998776654443
No 171
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=74.10 E-value=21 Score=27.46 Aligned_cols=42 Identities=7% Similarity=0.138 Sum_probs=36.8
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
..++...||+.+|++..-+-..+..|+..|-+.-.-|..++-
T Consensus 57 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R 98 (154)
T 2eth_A 57 GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRR 98 (154)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCcc
Confidence 479999999999999999999999999999998877554443
No 172
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=74.09 E-value=22 Score=25.81 Aligned_cols=37 Identities=5% Similarity=0.063 Sum_probs=33.8
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEec
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKID 252 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akID 252 (303)
..++...||+.+|+|..-+-..+..|...|.+...-+
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 4589999999999999999999999999999987655
No 173
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=73.92 E-value=19 Score=24.83 Aligned_cols=79 Identities=10% Similarity=-0.013 Sum_probs=49.4
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...---... -...+...+.+++..|+|..|....+++-....+. + +.......+...+.
T Consensus 16 ~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~--~~~~~~~~~~~~~~ 86 (111)
T 2l6j_A 16 KQGLYREAVHCYDQLITAQPQ------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA-E--HVAIRSKLQYRLEL 86 (111)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST-T--SHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-c--HHHHHHHHHHHHHH
Confidence 468999999888765211111 14567888999999999999999999987665322 2 23332333334455
Q ss_pred HHHHhhhH
Q psy4458 84 LDQHEGSY 91 (303)
Q Consensus 84 ~~~~~~~f 91 (303)
.+...+++
T Consensus 87 ~~~~~~~~ 94 (111)
T 2l6j_A 87 AQGAVGSV 94 (111)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHhH
Confidence 54444433
No 174
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=73.82 E-value=12 Score=28.51 Aligned_cols=42 Identities=10% Similarity=0.031 Sum_probs=36.8
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCc
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 256 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~g 256 (303)
...++...||+.+|+++.-+-..+..|...|-+.-.-|..++
T Consensus 43 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 84 (145)
T 3g3z_A 43 EGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDR 84 (145)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCG
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCC
Confidence 345999999999999999999999999999999876665554
No 175
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=73.80 E-value=31 Score=27.17 Aligned_cols=75 Identities=13% Similarity=0.133 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCC-------cchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy4458 30 EKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEK-------DDVQELKLKYYRLMIELDQHEGSYLATCKHYRAIL 102 (303)
Q Consensus 30 ~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~-------~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~ 102 (303)
...+.+...+..++..++|..|..+.+++-........ +....++...+...+..+...++|.+|-.+|..++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 35566888899999999999999999998765532210 00123334666778899999999999999999987
Q ss_pred cC
Q psy4458 103 TT 104 (303)
Q Consensus 103 ~t 104 (303)
..
T Consensus 116 ~~ 117 (198)
T 2fbn_A 116 KI 117 (198)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 176
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=73.37 E-value=21 Score=25.30 Aligned_cols=62 Identities=6% Similarity=-0.067 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy4458 33 TLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 33 ~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~ 103 (303)
..+...+.+++..|++..|....+++-.... . .. ..+...+..+...++|-+|-..|..+..
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~---~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDP--T---YS----VAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---CH----HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--C---cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5678889999999999999999999876542 1 21 2345578888999999999999988864
No 177
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=72.97 E-value=19 Score=30.20 Aligned_cols=86 Identities=12% Similarity=-0.079 Sum_probs=64.8
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+..+--... .-.+.+...+.++...|++..|..+..++-.... . + ...+...+.
T Consensus 33 ~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~---~----~~~~~~la~ 97 (327)
T 3cv0_A 33 KLANLAEAALAFEAVCQAAP------EREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--K---D----IAVHAALAV 97 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---C----HHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--C---C----HHHHHHHHH
Confidence 46899999999887643211 1245667789999999999999999999876542 1 2 223455788
Q ss_pred HHHHhhhHHHHHHHHHHHHcC
Q psy4458 84 LDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+...++|.+|-..|..+...
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~ 118 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLS 118 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 889999999999999998864
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=72.75 E-value=17 Score=24.79 Aligned_cols=62 Identities=13% Similarity=0.036 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 34 LILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 34 ~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+...+++++..+++..|..+.+++-.... . +. ..+..++..+...++|.+|...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~---~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 69 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP--E---ES----KYWLMKGKALYNLERYEEAVDCYNYVINV 69 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--C---CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--C---CH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 346678889999999999999999876542 1 22 23446788888999999999999988754
No 179
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=72.70 E-value=28 Score=30.37 Aligned_cols=94 Identities=13% Similarity=0.065 Sum_probs=62.5
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...---..+.... ....+...+++++..|++..|...+.++...... .+ ............+.
T Consensus 227 ~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~-~~--~~~~~~~~~~~la~ 301 (373)
T 1hz4_A 227 MTGDKAAAANWLRHTAKPEFANNHF--LQGQWRNIARAQILLGEFEPAEIVLEELNENARS-LR--LMSDLNRNLLLLNQ 301 (373)
T ss_dssp HTTCHHHHHHHHHHSCCCCCTTCGG--GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TT--CHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCCCCCCcchh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-Cc--chhhHHHHHHHHHH
Confidence 4688899988887664211111111 1123567789999999999999999888765522 22 22233445566788
Q ss_pred HHHHhhhHHHHHHHHHHHH
Q psy4458 84 LDQHEGSYLATCKHYRAIL 102 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~ 102 (303)
.+...+++-+|...|.++.
T Consensus 302 ~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 302 LYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 8888899988888888774
No 180
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=72.60 E-value=22 Score=26.89 Aligned_cols=42 Identities=12% Similarity=0.138 Sum_probs=32.4
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
.. ++...||+.+|+|..-+-..+..|...|-+.-.-|..++-
T Consensus 50 ~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R 91 (146)
T 3tgn_A 50 ES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDAR 91 (146)
T ss_dssp CC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--------
T ss_pred CC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCc
Confidence 45 9999999999999999999999999999998877655554
No 181
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=72.40 E-value=51 Score=29.57 Aligned_cols=101 Identities=9% Similarity=-0.032 Sum_probs=57.7
Q ss_pred ccCCHHHHHHHHhcc-cc--ccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHH-HHHHHH
Q psy4458 4 DEGDVTEAANIIQEL-QV--ETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQEL-KLKYYR 79 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i-~v--et~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~-k~~y~~ 79 (303)
..|++++|.+.++.- .+ +..+.-....-+..+-..+.++...|++..|..+.+|+........++...+. ..-...
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence 468899988877642 11 11111111122344567788999999999999999888654321111000011 111111
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 80 LMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 80 ~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
-.+......++|.+|-.+|..++..
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~ 167 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEK 167 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHh
Confidence 2334445567899999999888753
No 182
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=72.27 E-value=44 Score=29.34 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCC---C---cchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 31 KVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDE---K---DDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 31 k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~---~---~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
....+...+..++..++|..|....+++-....... . ......+...+..++..+...++|.+|-.+|..++..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778889999999999999999999876653321 0 0023344566777899999999999999999999764
No 183
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=72.14 E-value=23 Score=25.07 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=34.7
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCC
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPA 255 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~ 255 (303)
-..++...||+.+|+|..-+-..+..|...|-+...-+..+
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~ 74 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGK 74 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC---
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccC
Confidence 46799999999999999999999999999999977655433
No 184
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=71.94 E-value=37 Score=27.47 Aligned_cols=96 Identities=9% Similarity=0.007 Sum_probs=64.3
Q ss_pred ccCCHHHHHHHHhccccccccC-CchH--HHH--------HHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGS-MEKK--EKV--------TLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 72 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~-~~~~--~k~--------~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e 72 (303)
..|++++|...+..+--.-..+ .... .++ +..+.++++++..|+|..|....+++-....+. ...
T Consensus 108 ~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~ 183 (225)
T 2yhc_A 108 DPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDT----QAT 183 (225)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTS----HHH
T ss_pred CcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCC----Ccc
Confidence 3578999999888774322122 1111 111 223677889999999999999999988766321 122
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy4458 73 LKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 105 (303)
Q Consensus 73 ~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t~ 105 (303)
. .-...++..+...+++.+|-..|..+...+
T Consensus 184 ~--~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 184 R--DALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp H--HHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred H--HHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 2 233448888999999999998888776543
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=71.88 E-value=23 Score=33.21 Aligned_cols=88 Identities=10% Similarity=-0.027 Sum_probs=65.5
Q ss_pred CCccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHH
Q psy4458 2 KEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLM 81 (303)
Q Consensus 2 ~e~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~ 81 (303)
+...|++++|...+...---. . .-...+...+.+++..++|..|....+++-.... . +. ..+...
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~---~~----~~~~~l 80 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-P-----SNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--K---YI----KGYYRR 80 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--T---CH----HHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-C-----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--C---CH----HHHHHH
Confidence 346799999999887542111 1 1156788899999999999999999999876531 1 21 234457
Q ss_pred HHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 82 IELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 82 ~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
+..+...++|.+|-..|..++..
T Consensus 81 g~~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 81 AASNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88889999999999999998764
No 186
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=71.79 E-value=22 Score=32.63 Aligned_cols=85 Identities=8% Similarity=-0.083 Sum_probs=62.7
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...--- .+. .+.+...+.+++..|++..|..+..++-....+ +. ..+...+.
T Consensus 255 ~~~~~~~A~~~~~~~~~~-----~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~----~~~~~l~~ 318 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL-----HPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-----YP----PTYYHRGQ 318 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH-----CCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-----CH----HHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhc-----CCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-----CH----HHHHHHHH
Confidence 457888888888766421 111 567788889999999999999999988765421 11 23456788
Q ss_pred HHHHhhhHHHHHHHHHHHHcC
Q psy4458 84 LDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+...++|.+|-..|..+...
T Consensus 319 ~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 319 MYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHh
Confidence 888999999999999988754
No 187
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=71.78 E-value=25 Score=27.15 Aligned_cols=42 Identities=5% Similarity=0.049 Sum_probs=35.6
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCc
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 256 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~g 256 (303)
...++...||+.+|++..-+-..|..|...|-|.-.-|..++
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 105 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQ 105 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CC
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCC
Confidence 457999999999999999999999999999999877654443
No 188
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=71.71 E-value=24 Score=25.02 Aligned_cols=68 Identities=3% Similarity=0.005 Sum_probs=48.4
Q ss_pred hceeeHHHH----HHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEeccCCChhHHHHHHHHHHHHHHHHH
Q psy4458 215 YTRITLQRM----CDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLV 284 (303)
Q Consensus 215 Y~~Itl~~l----a~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~w~~~i~~l~~~v 284 (303)
...++...| |+.+|++..-+-..+..|...|-+.-..|.....+.... ...+.+..|...+......+
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~--~G~~~~~~~~~~~~~~~~~~ 91 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTE--KGKLFAISLKTAIETYKQIK 91 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECH--HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECH--HHHHHHHHHHHHHHHHHHHH
Confidence 356899999 899999999999999999999999888887444444432 22244555555554444444
No 189
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=71.65 E-value=31 Score=27.09 Aligned_cols=93 Identities=6% Similarity=-0.053 Sum_probs=66.2
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCC----------CcchHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDE----------KDDVQEL 73 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~----------~~~~~e~ 73 (303)
..|++++|...+...---. . .-...+...+.+++..|++..|....+++-....... .. ...
T Consensus 49 ~~g~~~~A~~~~~~al~~~-~-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~- 120 (213)
T 1hh8_A 49 ILKNMTEAEKAFTRSINRD-K-----HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK-LFA- 120 (213)
T ss_dssp HTTCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCE-EEH-
T ss_pred HcCCHHHHHHHHHHHHHhC-c-----cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccC-ccc-
Confidence 4689999998887642111 1 1246778899999999999999999999877553221 00 011
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy4458 74 KLKYYRLMIELDQHEGSYLATCKHYRAILTTP 105 (303)
Q Consensus 74 k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t~ 105 (303)
...+...+..+...++|.+|-..|..+....
T Consensus 121 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 121 -CEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred -hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 2334558888899999999999999998653
No 190
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=71.56 E-value=29 Score=26.90 Aligned_cols=65 Identities=9% Similarity=0.048 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 31 KVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 31 k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
-.+.+...+..++..|+|..|....+++-..-. .. -.++...+..+...++|-+|-.+|..++..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P--~~-------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF--YN-------VDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC-------HHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 466788899999999999999999999886542 22 235566889999999999999999999754
No 191
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=71.51 E-value=8.1 Score=30.01 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=36.0
Q ss_pred hhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceE---EEecCC
Q psy4458 214 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT---AKIDRP 254 (303)
Q Consensus 214 ~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~---akIDq~ 254 (303)
-..++++..||+.+|+|+.-+-..+.+|...|.|. +.+|+.
T Consensus 16 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 16 KDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChh
Confidence 35789999999999999999999999999999885 457765
No 192
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=71.48 E-value=19 Score=27.96 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=35.3
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCc
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 256 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~g 256 (303)
...++...||+.+|++..-+=..|.+|...|-|.-.-|..++
T Consensus 65 ~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~Dr 106 (161)
T 3e6m_A 65 YGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQ 106 (161)
T ss_dssp HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccC
Confidence 358999999999999999999999999999999877665544
No 193
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=71.24 E-value=29 Score=25.75 Aligned_cols=69 Identities=10% Similarity=-0.062 Sum_probs=55.1
Q ss_pred chHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 27 EKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 27 ~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
+.....+.+...+..++..|||..|.....++-.... . + ...+...+..+...++|.+|...|..+...
T Consensus 8 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~---~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 76 (166)
T 1a17_A 8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNP--S---N----AIYYGNRSLAYLRTECYGYALGDATRAIEL 76 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--T---C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--C---C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4456788899999999999999999999998876542 1 2 233445788888999999999999998764
No 194
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=71.23 E-value=9.8 Score=28.93 Aligned_cols=43 Identities=5% Similarity=-0.045 Sum_probs=29.9
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
...++...||+.+|+++.-+=..+..|...|-|.-.-|..++-
T Consensus 49 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR 91 (142)
T 3ech_A 49 QRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQR 91 (142)
T ss_dssp TTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC--------
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCC
Confidence 3479999999999999999999999999999998877766654
No 195
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=71.23 E-value=12 Score=27.44 Aligned_cols=64 Identities=8% Similarity=-0.106 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 32 VTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 32 ~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+..+..+..++..|++..|....+++-.... + +. ..+..++..+...+++-+|-..|..++..
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P--~---~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l 80 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEP--E---RE----EAWRSLGLTQAENEKDGLAIIALNHARML 80 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHST--T---CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--C---CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34568889999999999999999999876542 1 22 23445888889999999999999988753
No 196
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=71.19 E-value=15 Score=33.22 Aligned_cols=91 Identities=8% Similarity=-0.153 Sum_probs=64.6
Q ss_pred ccCCHHHHHHHHhcccc-----------ccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHH
Q psy4458 4 DEGDVTEAANIIQELQV-----------ETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 72 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~v-----------et~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e 72 (303)
..|++++|...+...-- +.... ........++..+.+++..++|..|..+.+++-.... + +
T Consensus 235 ~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~-~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--~---~-- 306 (370)
T 1ihg_A 235 KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAK-LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP--S---N-- 306 (370)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGG-GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--T---C--
T ss_pred HhcCHHHHHHHHHHHHHHhhcCccccChHHHHH-HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc--h---h--
Confidence 46788888877765421 00000 2335678889999999999999999999999876431 1 1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 73 LKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 73 ~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
...+..++..+...++|.+|-..|..++..
T Consensus 307 --~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 307 --TKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 223345788888999999999999988653
No 197
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=71.04 E-value=24 Score=28.83 Aligned_cols=86 Identities=6% Similarity=-0.273 Sum_probs=63.3
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...---. . .-.+.+...+.++...|++..|..+.+++-..... . ...+..++.
T Consensus 55 ~~~~~~~A~~~~~~al~~~-~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~-------~~~~~~la~ 119 (275)
T 1xnf_A 55 SLGLRALARNDFSQALAIR-P-----DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT--Y-------NYAHLNRGI 119 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHC-C-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C-------THHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHcC-C-----CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc--c-------cHHHHHHHH
Confidence 4688999988887643111 1 12456788899999999999999999998765421 1 123445788
Q ss_pred HHHHhhhHHHHHHHHHHHHcC
Q psy4458 84 LDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+...++|.+|...|..+...
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh
Confidence 888899999999999998764
No 198
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=70.88 E-value=27 Score=25.20 Aligned_cols=65 Identities=14% Similarity=-0.022 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 31 KVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 31 k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
..+.+...+..++..|+|..|....+++-.... . + ...+..++..+...++|.+|-..|..+...
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~---~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 72 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--L---V----AVYYTNRALCYLKMQQPEQALADCRRALEL 72 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc--C---c----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356788999999999999999999998876542 1 1 234556788888999999999999988753
No 199
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=70.59 E-value=21 Score=26.68 Aligned_cols=40 Identities=10% Similarity=0.168 Sum_probs=36.2
Q ss_pred eeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCc
Q psy4458 217 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 256 (303)
Q Consensus 217 ~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~g 256 (303)
.++...||+.+|++..-+-..+..|...|-+.-.-|..++
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~ 89 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDS 89 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCC
Confidence 6999999999999999999999999999999877765554
No 200
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=70.54 E-value=27 Score=30.05 Aligned_cols=84 Identities=6% Similarity=-0.134 Sum_probs=45.5
Q ss_pred cCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHH
Q psy4458 5 EGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIEL 84 (303)
Q Consensus 5 ~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~ 84 (303)
.|++++|...+...---. ... .....+...++++...|++..|..+.+++-.... + +. ..+..++..
T Consensus 194 ~~~~~~A~~~~~~a~~~~-p~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~---~~----~~~~~l~~~ 260 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLD-PTS---IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP--N---DY----LLWNKLGAT 260 (368)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---CH----HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC-cCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--C---CH----HHHHHHHHH
Confidence 366677776666542111 110 0234556667777777777777777776654431 1 11 123345555
Q ss_pred HHHhhhHHHHHHHHHHH
Q psy4458 85 DQHEGSYLATCKHYRAI 101 (303)
Q Consensus 85 ~~~~~~f~eaa~~y~e~ 101 (303)
+...++|.+|-..|..+
T Consensus 261 ~~~~g~~~~A~~~~~~a 277 (368)
T 1fch_A 261 LANGNQSEEAVAAYRRA 277 (368)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 66666666666666554
No 201
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=70.26 E-value=18 Score=26.94 Aligned_cols=77 Identities=13% Similarity=0.200 Sum_probs=47.6
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEeccCCChhHHHHHHHHHHHHHHH-HHHHHHhhhhHH
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMK-LVNNTTHLINKE 294 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~w~~~i~~l~~-~v~~~~~lI~ke 294 (303)
...+...||+.+|+|..-+-..+..|...|-+...-+. ..+.+.-....-..+..|......+.. .+..+..++..+
T Consensus 30 ~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~g--r~~~y~l~~~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~ 107 (118)
T 3f6o_A 30 GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQG--RVRTCAIEKEPFTAVEAWLAEQQELWESRTDRLEQFVTEH 107 (118)
T ss_dssp CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEET--TEEEEEECSHHHHHHHHHHHHHHHHHHTCC----------
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecC--CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56899999999999999999999999999999887663 333333333333456666666554442 233344444433
No 202
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=69.77 E-value=30 Score=26.07 Aligned_cols=40 Identities=5% Similarity=-0.002 Sum_probs=36.7
Q ss_pred eHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceE
Q psy4458 219 TLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGII 258 (303)
Q Consensus 219 tl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV 258 (303)
+.+.||+.+|+++.-+=..+..|...|-+.-.-|..++-.
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~ 91 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRI 91 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCce
Confidence 9999999999999999999999999999998888777653
No 203
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=69.35 E-value=28 Score=32.28 Aligned_cols=92 Identities=10% Similarity=-0.024 Sum_probs=65.8
Q ss_pred ccCCHHHHHHHHhccc-ccc-ccCCc-------hHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHH
Q psy4458 4 DEGDVTEAANIIQELQ-VET-YGSME-------KKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELK 74 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~-vet-~~~~~-------~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k 74 (303)
..|++.+|...+...- ... ....+ ...+...++..+.+++..++|..|....+++-.... ..
T Consensus 280 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--~~------- 350 (457)
T 1kt0_A 280 KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS--AN------- 350 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TC-------
T ss_pred hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--cc-------
Confidence 4688889888776541 111 11111 223468889999999999999999999999976542 11
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 75 LKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 75 ~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
...+..++..+...++|-+|-..|..++..
T Consensus 351 ~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 351 EKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 223445788889999999999999999764
No 204
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=69.02 E-value=26 Score=24.26 Aligned_cols=68 Identities=10% Similarity=-0.016 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 28 KKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 28 ~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
.......+...++.+...+++..|.....++-.... . +. ..+..++..+...++|.+|...|..+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~---~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 72 (125)
T 1na0_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--N---NA----EAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (125)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--C---cH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 334467788899999999999999999998876541 1 22 23445778888899999999999888753
No 205
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=68.69 E-value=57 Score=32.53 Aligned_cols=134 Identities=10% Similarity=0.009 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCh
Q psy4458 32 VTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDP 111 (303)
Q Consensus 32 ~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t~~~~~~~ 111 (303)
.+.+...+.++...|++..|....+|+-.... + +. ..+..+|..+...++|-+|-.+|..++... +
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P--~---~~----~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-----P 74 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP--E---FA----AAHSNLASVLQQQGKLQEALMHYKEAIRIS-----P 74 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--C---CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C---CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C
Confidence 46677889999999999999999999876542 1 22 234457888899999999999999997532 1
Q ss_pred HHHHHHHHHHHHHHHhCCCCchhhHhHHHhhhhhhcCCchHHHHHHHHhcCCcccCchHHHHHHHHhhcccc
Q psy4458 112 VQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTS 183 (303)
Q Consensus 112 ~~~~~~L~~~v~~~iLs~~~~~r~~ll~~l~~~~~~~~~p~~~~L~~~f~~~~li~~~~~~~~~~~~L~~~~ 183 (303)
...........++.-+..+..-...+.+.+..+|. ....+..|...+.... ++.+....|++.|+-+|
T Consensus 75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~--~~~a~~~Lg~~~~~~g--~~~eAi~~~~~Al~l~P 142 (723)
T 4gyw_A 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA--FADAHSNLASIHKDSG--NIPEAIASYRTALKLKP 142 (723)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCC
Confidence 11111122233333333332223323333333443 2334666766664432 46666777777776554
No 206
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=68.51 E-value=14 Score=27.78 Aligned_cols=42 Identities=12% Similarity=0.022 Sum_probs=37.1
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCc
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 256 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~g 256 (303)
...++...||+.+|+|+.-+-..+..|...|-+.-.-|..++
T Consensus 43 ~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~ 84 (142)
T 3bdd_A 43 DAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQ 84 (142)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSST
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 457999999999999999999999999999999887765544
No 207
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=68.20 E-value=12 Score=28.42 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=34.5
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEE
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIIN 259 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~ 259 (303)
..++.+.||+.+|+|+..+.+.+..+...|-+...=....|+.-
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L 68 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVL 68 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEE
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEe
Confidence 56899999999999999999999999999998664333344443
No 208
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=68.14 E-value=24 Score=28.48 Aligned_cols=43 Identities=7% Similarity=0.087 Sum_probs=39.1
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
...++.+.||+.+|++..-+=..|..|+..|-|.-.-|..++-
T Consensus 55 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR 97 (189)
T 3nqo_A 55 EEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKR 97 (189)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSS
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCC
Confidence 5679999999999999999999999999999999888777664
No 209
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=68.13 E-value=9.4 Score=30.24 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=35.0
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceE---EEecCC
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT---AKIDRP 254 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~---akIDq~ 254 (303)
..++++..||+.+|+|+.-+-..+..|...|.|. +.+|..
T Consensus 22 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 22 NGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChH
Confidence 4568999999999999999999999999999885 466654
No 210
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=67.41 E-value=24 Score=27.71 Aligned_cols=47 Identities=9% Similarity=0.058 Sum_probs=35.8
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCc---eEEec
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG---IINFA 261 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~g---iV~f~ 261 (303)
-..++...||+.+|++..-+=..|..|...|-|.-.-|..++ .|...
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT 115 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLT 115 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEEC
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEEC
Confidence 456999999999999999999999999999999877755444 44444
No 211
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=67.33 E-value=30 Score=24.41 Aligned_cols=70 Identities=11% Similarity=0.047 Sum_probs=54.2
Q ss_pred CchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 26 MEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 26 ~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+......-+..++..++..++|..|..+..++-.... + + ...+...+..+...++|-+|...|..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---~--~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 79 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP---K--D----AKLYSNRAACYTKLLEFQLALKDCEECIQL 79 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT---T--C----HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---C--c----HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34446677788899999999999999999998876431 1 2 234455788888999999999999988754
No 212
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.22 E-value=33 Score=24.82 Aligned_cols=69 Identities=7% Similarity=-0.109 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 30 EKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 30 ~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
...+.+...++.++..++|..|..+.+++-... . +.......+..++..+...++|.+|...|..+...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD---A---TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---C---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---c---cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 457788999999999999999999999887543 1 22334566667888899999999999999988754
No 213
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=67.07 E-value=9.3 Score=29.87 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=35.8
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceE---EEecCC
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT---AKIDRP 254 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~---akIDq~ 254 (303)
-.++++..||+.+|+|+.-+-..+.+|...|.|. +.+|..
T Consensus 20 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 20 NARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPK 62 (152)
T ss_dssp CTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHH
Confidence 4689999999999999999999999999999885 467865
No 214
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=66.95 E-value=20 Score=26.97 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=37.5
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
...++...||+.+|+|..-+-..+..|...|-+.-.-|..++-
T Consensus 49 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R 91 (142)
T 2bv6_A 49 ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQR 91 (142)
T ss_dssp SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTT
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCcc
Confidence 4579999999999999999999999999999998877755443
No 215
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=66.61 E-value=56 Score=27.24 Aligned_cols=23 Identities=4% Similarity=-0.109 Sum_probs=12.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHc
Q psy4458 81 MIELDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 81 ~~~~~~~~~~f~eaa~~y~e~~~ 103 (303)
.+..+...++|.+|-..|..+..
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 45555555556555555555554
No 216
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=66.50 E-value=48 Score=26.47 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCC-------cchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 32 VTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEK-------DDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 32 ~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~-------~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+-.+..+..++..|||..|....+++-....+... .........+..-.+..+...++|-+|-..|..++..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 466788999999999999999999988654311000 0000111112223788999999999999999998754
No 217
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=66.35 E-value=18 Score=27.78 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=34.0
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCc
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 256 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~g 256 (303)
...++...||+.+|++..-+-..+..|...|-+.-.-|..++
T Consensus 55 ~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~ 96 (155)
T 3cdh_A 55 NDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDK 96 (155)
T ss_dssp CSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC-----
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcC
Confidence 457999999999999999999999999999999766554443
No 218
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=65.74 E-value=15 Score=28.01 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=32.9
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCc
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 256 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~g 256 (303)
...++...||+.+|+++.-+=..+..|...|-+.-.-|..++
T Consensus 52 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (148)
T 3nrv_A 52 ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
T ss_dssp SSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCc
Confidence 458999999999999999999999999999999776655544
No 219
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=65.58 E-value=10 Score=29.51 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=35.5
Q ss_pred hhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceE---EEecCC
Q psy4458 214 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT---AKIDRP 254 (303)
Q Consensus 214 ~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~---akIDq~ 254 (303)
--.+++.+.||+.+|+|+.-+-..+.+|...|.|. +.+|..
T Consensus 20 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 20 ENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChH
Confidence 34789999999999999999999999999999875 356654
No 220
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=65.40 E-value=25 Score=27.14 Aligned_cols=43 Identities=7% Similarity=0.053 Sum_probs=32.9
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
...++...||+.+|++..-+-..+..|+..|-|.-.-|..++-
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R 103 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRR 103 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCC
Confidence 4679999999999999999999999999999997766554443
No 221
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=65.02 E-value=61 Score=29.86 Aligned_cols=75 Identities=12% Similarity=0.096 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCC--c----chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy4458 30 EKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEK--D----DVQELKLKYYRLMIELDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 30 ~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~--~----~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~ 103 (303)
...+.+...+..++..++|..|....+++-........ + .....+...+..++..+...++|.+|-.+|..++.
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34556788899999999999999999998765532210 0 01334456677788999999999999999999976
Q ss_pred C
Q psy4458 104 T 104 (303)
Q Consensus 104 t 104 (303)
.
T Consensus 346 ~ 346 (457)
T 1kt0_A 346 L 346 (457)
T ss_dssp H
T ss_pred c
Confidence 4
No 222
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=64.78 E-value=59 Score=30.55 Aligned_cols=86 Identities=9% Similarity=0.002 Sum_probs=63.4
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...++..---. . .-.+.+...+.++...|++..|....+++-.... + +. ..+..++.
T Consensus 35 ~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~--~~----~~~~~la~ 99 (568)
T 2vsy_A 35 GMGDTTAGEMAVQRGLALH-----P-GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP---E--HP----GIALWLGH 99 (568)
T ss_dssp HHTCHHHHHHHHHHHHTTS-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T--CH----HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---C--CH----HHHHHHHH
Confidence 4588999998887653211 1 1256778889999999999999999999876542 1 22 23445788
Q ss_pred HHHHhhhHHHHHHHHHHHHcC
Q psy4458 84 LDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+...++|.+|-..|..++..
T Consensus 100 ~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 100 ALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888999999999999988754
No 223
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=64.61 E-value=33 Score=23.95 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=34.5
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCC
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRP 254 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~ 254 (303)
..++...||+.+|+|..-+-..+..|...|-+...-|..
T Consensus 37 ~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r 75 (99)
T 3cuo_A 37 PGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQ 75 (99)
T ss_dssp CSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 469999999999999999999999999999997765543
No 224
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=64.54 E-value=72 Score=27.76 Aligned_cols=51 Identities=12% Similarity=-0.130 Sum_probs=27.4
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhh
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~ 60 (303)
..|++++|...+...--.... -...+...+.++...|++..|....+++-.
T Consensus 147 ~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 197 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQPN------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467888888777654311100 123344455555666666666655555543
No 225
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=63.86 E-value=14 Score=28.81 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=35.3
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceE---EEecCC
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT---AKIDRP 254 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~---akIDq~ 254 (303)
...+++..||+.+|+|+.-+-..+.+|...|.|. +.+|+.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 19 DGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 4679999999999999999999999999999884 456765
No 226
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=63.84 E-value=15 Score=28.13 Aligned_cols=42 Identities=7% Similarity=0.029 Sum_probs=35.5
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEE--EecCCCc
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA--KIDRPAG 256 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~a--kIDq~~g 256 (303)
...+|...||+.+|+++.-+-..+..|+..|-+.- .-|..++
T Consensus 53 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~ 96 (154)
T 2qww_A 53 TPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDS 96 (154)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCC
Confidence 35699999999999999999999999999999987 6565554
No 227
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=63.13 E-value=14 Score=29.53 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=39.4
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEeccC
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARN 263 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~~ 263 (303)
..+|.+.||+.+|+|+..+++.+..+...|-+..+=-...|..--.+|
T Consensus 43 ~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 90 (159)
T 3lwf_A 43 GPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDP 90 (159)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecCCH
Confidence 359999999999999999999999999999998775555565544434
No 228
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=62.13 E-value=31 Score=25.11 Aligned_cols=43 Identities=7% Similarity=0.031 Sum_probs=38.6
Q ss_pred hceeeHHHHHHHh-CCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 215 YTRITLQRMCDLL-GLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 215 Y~~Itl~~la~ll-~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
...+++..|++.+ |+|+.-+=..|..|...|-|..+.|..++-
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r 68 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPP 68 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSC
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCC
Confidence 4678999999999 999999999999999999999888876554
No 229
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=61.94 E-value=27 Score=26.39 Aligned_cols=43 Identities=5% Similarity=0.080 Sum_probs=34.9
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
...++.+.||+.+|+++.-+=..+..|...|-+.-.-|..++-
T Consensus 48 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R 90 (140)
T 3hsr_A 48 DEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDER 90 (140)
T ss_dssp TCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC------
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcc
Confidence 5689999999999999999999999999999998877665553
No 230
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=61.52 E-value=62 Score=26.00 Aligned_cols=63 Identities=6% Similarity=-0.084 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 33 TLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 33 ~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
+.++..+..++..|++..|....+++-.... + +. ..+...+..+...++|-+|-..|..++..
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~---~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 68 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENP--Q---DP----EALYWLARTQLKLGLVNPALENGKTLVAR 68 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS--S---CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C---CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567788999999999999999998875432 1 22 23445788888999999999999998753
No 231
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=61.42 E-value=12 Score=29.18 Aligned_cols=49 Identities=8% Similarity=0.068 Sum_probs=38.5
Q ss_pred HHHHhhhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEE
Q psy4458 209 RVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIIN 259 (303)
Q Consensus 209 ~~isk~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~ 259 (303)
..+++.... |.+.||+.+++|+..+++++..+...|-+...=- ..|+.-
T Consensus 16 ~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy~L 64 (145)
T 1xd7_A 16 SLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGASL 64 (145)
T ss_dssp HHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSCEE
T ss_pred HHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCcee
Confidence 334444456 9999999999999999999999999999977655 445443
No 232
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=60.79 E-value=41 Score=23.72 Aligned_cols=37 Identities=14% Similarity=0.292 Sum_probs=34.0
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEec
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKID 252 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akID 252 (303)
...++..||+.+|+|..-+-..+..|...|-+...-+
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~ 71 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKE 71 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 6799999999999999999999999999999987644
No 233
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=60.74 E-value=11 Score=26.55 Aligned_cols=35 Identities=14% Similarity=0.338 Sum_probs=31.0
Q ss_pred hhhceeeHHHHHHHh-CCCHHHHHHHHHhhhhcCce
Q psy4458 213 KYYTRITLQRMCDLL-GLPIEETEEFLSSMVVSKTI 247 (303)
Q Consensus 213 k~Y~~Itl~~la~ll-~ls~~~vE~~l~~mI~~~~l 247 (303)
+.=+.-.|..++..| +..+-+|.+.+..||.+|+|
T Consensus 17 ~~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~l 52 (78)
T 1ucr_A 17 GSKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVL 52 (78)
T ss_dssp HHSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSE
T ss_pred cccccchHHHHHHHccccCHHHHHHHHHHHHhcCce
Confidence 344566699999999 99999999999999999988
No 234
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=60.30 E-value=35 Score=26.59 Aligned_cols=43 Identities=5% Similarity=0.007 Sum_probs=36.2
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceE
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGII 258 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV 258 (303)
..++...||+.+|++..-+=..|..|...|-|.-.-|..++-.
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~ 103 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRRV 103 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCCe
Confidence 4899999999999999999999999999999998888777753
No 235
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=60.05 E-value=20 Score=32.88 Aligned_cols=50 Identities=4% Similarity=-0.118 Sum_probs=30.5
Q ss_pred cchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 46 KDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 46 ~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
|++..|..+.+++-.... + +. ..+..++..+...+++.+|-..|..+...
T Consensus 442 ~~~~~A~~~~~~a~~~~p--~---~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 442 EKFNAAIKLLTKACELDP--R---SE----QAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHHHHCT--T---CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC--C---CH----HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 555555555555544321 1 11 23445677778888888888888887654
No 236
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=59.33 E-value=21 Score=27.29 Aligned_cols=42 Identities=10% Similarity=0.063 Sum_probs=34.5
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCc
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 256 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~g 256 (303)
...++...||+.+|++..-+-..|..|...|-|.-..|..++
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 100 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDE 100 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccC
Confidence 467999999999999999999999999999999877655444
No 237
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=59.11 E-value=31 Score=30.47 Aligned_cols=92 Identities=12% Similarity=-0.072 Sum_probs=63.5
Q ss_pred CccCCHHHHHHHHhc-cccccc----cCCc------hHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchH
Q psy4458 3 EDEGDVTEAANIIQE-LQVETY----GSME------KKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQ 71 (303)
Q Consensus 3 e~~~~~~~Aa~~L~~-i~vet~----~~~~------~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~ 71 (303)
-..|++.+|...+.. +..... ...+ ..-+...++..+.+++..++|..|....+++-.... ..
T Consensus 190 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--~~---- 263 (338)
T 2if4_A 190 FKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE--KN---- 263 (338)
T ss_dssp CSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT--TC----
T ss_pred HhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----
Confidence 356888888887765 222110 0010 111234788899999999999999999999876541 11
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy4458 72 ELKLKYYRLMIELDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 72 e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~ 103 (303)
...+..++..+...++|-+|-..|..++.
T Consensus 264 ---~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 264 ---PKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp ---HHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22344578888999999999999998864
No 238
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=59.11 E-value=35 Score=24.88 Aligned_cols=37 Identities=8% Similarity=0.196 Sum_probs=33.9
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEec
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKID 252 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akID 252 (303)
..+++..||+.+|+|+.-+-..+..|...|.+...-|
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 73 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSGGLVEARRE 73 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 5689999999999999999999999999999987654
No 239
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=59.02 E-value=12 Score=30.23 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=35.5
Q ss_pred hhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceE---EEecCC
Q psy4458 214 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT---AKIDRP 254 (303)
Q Consensus 214 ~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~---akIDq~ 254 (303)
-..++++..||+.+|+|+.-+-..+.+|...|.|. +.+|..
T Consensus 38 ~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~ 81 (171)
T 2e1c_A 38 NDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 81 (171)
T ss_dssp HCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECHH
Confidence 35689999999999999999999999999999874 456653
No 240
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=58.68 E-value=36 Score=23.71 Aligned_cols=41 Identities=12% Similarity=0.294 Sum_probs=29.2
Q ss_pred HHHHhhhceeeHHHHHHHhC-----------CCHHHHHHHHHhhhhcCceEE
Q psy4458 209 RVMAKYYTRITLQRMCDLLG-----------LPIEETEEFLSSMVVSKTITA 249 (303)
Q Consensus 209 ~~isk~Y~~Itl~~la~ll~-----------ls~~~vE~~l~~mI~~~~l~a 249 (303)
...-.-+.++.++||...|. +|.++++..+..+|.+|+|.+
T Consensus 14 ~GMLtN~~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~~ 65 (74)
T 1ldd_A 14 EGMLTNLGAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLKY 65 (74)
T ss_dssp HHHHHHHCSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHhcCCCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEEE
Confidence 33333467777777766551 356889999999999999864
No 241
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=58.56 E-value=15 Score=28.14 Aligned_cols=43 Identities=14% Similarity=0.071 Sum_probs=33.2
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
...++...||+.+|+++.-+=..+..|+..|-|.-.-|..++-
T Consensus 53 ~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R 95 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKR 95 (149)
T ss_dssp SSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC--------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcc
Confidence 4789999999999999999999999999999998776655543
No 242
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=58.07 E-value=15 Score=28.77 Aligned_cols=44 Identities=14% Similarity=0.078 Sum_probs=36.4
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEE
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIIN 259 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~ 259 (303)
..+|.+.||+.+|+|+..+++.+..+...|-+..+=-...|+.-
T Consensus 27 ~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~L 70 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQL 70 (143)
T ss_dssp CCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeee
Confidence 36999999999999999999999999999998775444444443
No 243
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=57.75 E-value=28 Score=26.52 Aligned_cols=44 Identities=5% Similarity=0.065 Sum_probs=33.7
Q ss_pred hhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEE--EecCCCce
Q psy4458 214 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA--KIDRPAGI 257 (303)
Q Consensus 214 ~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~a--kIDq~~gi 257 (303)
....+|...||+.+|++..-+=..+..|...|-+.- ..|..++-
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R 93 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQR 93 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC----------
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCC
Confidence 467899999999999999999999999999999986 33555554
No 244
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=57.49 E-value=29 Score=25.44 Aligned_cols=65 Identities=5% Similarity=-0.011 Sum_probs=45.7
Q ss_pred HHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce--EEeccCCChhHHHHHHHHHHHHHHHHHHHH
Q psy4458 223 MCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI--INFARNKDPGEILNEWSASLNELMKLVNNT 287 (303)
Q Consensus 223 la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi--V~f~~~~~~~~~l~~w~~~i~~l~~~v~~~ 287 (303)
|++.+++++.-+=..|.+|..+|-|...-+..+|- ..+.=...-.+.+..|......+...++++
T Consensus 32 l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~~~~~~~~~i~~~ 98 (108)
T 3l7w_A 32 IKLIASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKEWSVYKMTIDGI 98 (108)
T ss_dssp HTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457999999999999999999998876643442 233322223467888887777777777654
No 245
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=56.85 E-value=13 Score=29.56 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=36.7
Q ss_pred HhhhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceE---EEecCC
Q psy4458 212 AKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT---AKIDRP 254 (303)
Q Consensus 212 sk~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~---akIDq~ 254 (303)
-+--.++++..||+.+|+|+..+-.-+.+|...|.|. |.+|..
T Consensus 12 L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 12 LQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTT
T ss_pred HHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHH
Confidence 3445678999999999999999999999999999774 677764
No 246
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=56.83 E-value=23 Score=27.24 Aligned_cols=44 Identities=2% Similarity=0.111 Sum_probs=34.0
Q ss_pred hhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 214 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 214 ~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
....++...||+.+|++..-+-..+..|+..|-|.-.-|..++-
T Consensus 59 ~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R 102 (160)
T 3boq_A 59 NPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRR 102 (160)
T ss_dssp CTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC-------
T ss_pred cCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCC
Confidence 34679999999999999999999999999999997765554443
No 247
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=56.24 E-value=14 Score=28.89 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=34.3
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceE---EEecC
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT---AKIDR 253 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~---akIDq 253 (303)
..++++..||+.+|+|+.-+-..+..|...|.|. +.+|.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~ 60 (151)
T 2cyy_A 19 DGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDP 60 (151)
T ss_dssp CTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCG
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECH
Confidence 4689999999999999999999999999999874 45664
No 248
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=56.21 E-value=93 Score=30.22 Aligned_cols=61 Identities=7% Similarity=-0.054 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHhhhh------ccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy4458 34 LILEQMRLCLAKKDYIRTQIISKKINTK------FFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAI 101 (303)
Q Consensus 34 ~~L~~~rL~L~~~D~~~a~~~~~ki~~~------~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~ 101 (303)
.+-+.+++++..+|+..|+....++... ....++ .+. ...++......++|..|..+|+..
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~---~~~----~~~~~~~a~~~~~~~~A~~~~~~~ 749 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNN---KEG----LVTLAKDAETTGKFNLAFNAYWIA 749 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC---HHH----HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCC---HHH----HHHHHHHHHHcCchHHHHHHHHHc
Confidence 5567778888888888888777766421 101111 111 123456666677777777777776
No 249
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=56.08 E-value=32 Score=25.46 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=37.5
Q ss_pred hhhcee-eHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEE
Q psy4458 213 KYYTRI-TLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIIN 259 (303)
Q Consensus 213 k~Y~~I-tl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~ 259 (303)
+|=..+ |...||+.||+|..-|-+.+..+..+|-|..+ +..|+..
T Consensus 28 ~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~--~~~G~~V 73 (113)
T 3tqn_A 28 VEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR--RGLGMLV 73 (113)
T ss_dssp CTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEE
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--cCCeEEE
Confidence 456788 89999999999999999999999999987654 4556544
No 250
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=55.87 E-value=50 Score=23.22 Aligned_cols=45 Identities=11% Similarity=0.195 Sum_probs=37.7
Q ss_pred eeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEec
Q psy4458 217 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 261 (303)
Q Consensus 217 ~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~ 261 (303)
.++...||+.+|++..-+=..+..|...|-+...-|+....|...
T Consensus 30 ~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT 74 (95)
T 2qvo_A 30 DVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLT 74 (95)
T ss_dssp CEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEC
Confidence 399999999999999999999999999999955556555555554
No 251
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=55.81 E-value=26 Score=26.70 Aligned_cols=42 Identities=7% Similarity=0.140 Sum_probs=32.1
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
..++...||+.+|+++.-+=..+..|...|-|.-.-|..++-
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R 94 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRR 94 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC--------
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccc
Confidence 358999999999999999999999999999998777666654
No 252
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=55.52 E-value=64 Score=30.53 Aligned_cols=97 Identities=6% Similarity=-0.053 Sum_probs=66.9
Q ss_pred ccCCHHHHHHHHhcc---ccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQEL---QVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRL 80 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i---~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~ 80 (303)
..|+|++|....+.. ....+|.-.. .-...+..++.++...|+|..|..+..++-......-|++..... .-...
T Consensus 363 ~~g~~~eA~~~~~~aL~i~~~~lG~~Hp-~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~-~~~~~ 440 (490)
T 3n71_A 363 YLQAYEEASHYARRMVDGYMKLYHHNNA-QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITK-DLEAM 440 (490)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSCTTCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH-HHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH-HHHHH
Confidence 579999999887653 2233343222 356667889999999999999999999987654333333233332 23366
Q ss_pred HHHHHHHhhhHHHHHHHHHHHH
Q psy4458 81 MIELDQHEGSYLATCKHYRAIL 102 (303)
Q Consensus 81 ~~~~~~~~~~f~eaa~~y~e~~ 102 (303)
++..+...+.|.+|-..|+.+-
T Consensus 441 l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 441 RMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788889999988888773
No 253
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=55.20 E-value=24 Score=26.10 Aligned_cols=36 Identities=8% Similarity=0.170 Sum_probs=33.6
Q ss_pred eeeHHHHHHHh-CCCHHHHHHHHHhhhhcCceEEEec
Q psy4458 217 RITLQRMCDLL-GLPIEETEEFLSSMVVSKTITAKID 252 (303)
Q Consensus 217 ~Itl~~la~ll-~ls~~~vE~~l~~mI~~~~l~akID 252 (303)
++++..|++.+ |+|+.-+=..|..|...|-+..+.+
T Consensus 42 ~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 42 RQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp CBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred CCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 36699999999 9999999999999999999998888
No 254
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=54.99 E-value=13 Score=26.56 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=30.7
Q ss_pred eeHHHHHHHhCCCHHHHHHHHHhhhhcCceEE
Q psy4458 218 ITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 249 (303)
Q Consensus 218 Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~a 249 (303)
+|...||+.||+|...|-+.|-+|..+|.|..
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 99999999999999999999999999998865
No 255
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=54.94 E-value=22 Score=26.93 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=36.3
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCc
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 256 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~g 256 (303)
...++...||+.+|++..-+-..+..|...|-+.-..|..++
T Consensus 52 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~ 93 (147)
T 1z91_A 52 HETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDE 93 (147)
T ss_dssp HSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCT
T ss_pred CCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCC
Confidence 357999999999999999999999999999999776654433
No 256
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=54.30 E-value=11 Score=26.31 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=23.8
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHh
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSS 240 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~ 240 (303)
|=+.+++.+|..+|++++++|..+..
T Consensus 46 YL~~~l~eia~~l~~~~~eve~vL~~ 71 (76)
T 2k9l_A 46 FLSKSVEEISDVLRCSVEELEKVRQK 71 (76)
T ss_dssp TTCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 88999999999999999999998753
No 257
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=53.83 E-value=52 Score=22.75 Aligned_cols=62 Identities=11% Similarity=0.002 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 34 LILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 34 ~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
.+...+..+...|++..|..+..++-.... + +. ..+...+..+...+++.+|-..|..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~--~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 64 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP---R--SA----EAWYNLGNAYYKQGDYDEAIEYYQKALEL 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---T--CH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC---c--ch----hHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 456778889999999999999998865431 1 21 23344678888899999999999988754
No 258
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=53.60 E-value=15 Score=27.97 Aligned_cols=35 Identities=11% Similarity=0.192 Sum_probs=31.8
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEE
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 249 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~a 249 (303)
-.+++++.||+.+|+|+.-+-..+..|...|-+..
T Consensus 16 ~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 16 DARTPFTEIAKKLGISETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEec
Confidence 46789999999999999999999999999998854
No 259
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=53.17 E-value=53 Score=22.70 Aligned_cols=68 Identities=6% Similarity=-0.018 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 28 KKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 28 ~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
.......+...+..++..+++..|....+++-.... + + ...+...+..+...++|.+|-..|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 75 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNP---A--N----AVYFCNRAAAYSKLGNYAGAVQDCERAICI 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC---C--C----HHHHHHHHHHHHHhhchHHHHHHHHHHHhc
Confidence 345677889999999999999999999999876542 1 2 224456788888999999999999988754
No 260
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=52.45 E-value=86 Score=28.03 Aligned_cols=75 Identities=5% Similarity=-0.072 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCC---C----cchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy4458 30 EKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDE---K----DDVQELKLKYYRLMIELDQHEGSYLATCKHYRAIL 102 (303)
Q Consensus 30 ~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~---~----~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~ 102 (303)
.....+...+..++..++|..|....+++-....... . ..........+..++..+...++|-+|-.+|..++
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4455678889999999999999999988876431100 0 00123345666678888899999999999999998
Q ss_pred cC
Q psy4458 103 TT 104 (303)
Q Consensus 103 ~t 104 (303)
..
T Consensus 301 ~~ 302 (370)
T 1ihg_A 301 EI 302 (370)
T ss_dssp TT
T ss_pred Hh
Confidence 64
No 261
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=52.18 E-value=3 Score=36.66 Aligned_cols=38 Identities=11% Similarity=0.223 Sum_probs=0.0
Q ss_pred ceeeHHHHHHHh-CCCHHHHHHHHHhhhhcCceEEEecC
Q psy4458 216 TRITLQRMCDLL-GLPIEETEEFLSSMVVSKTITAKIDR 253 (303)
Q Consensus 216 ~~Itl~~la~ll-~ls~~~vE~~l~~mI~~~~l~akIDq 253 (303)
.=|+++.|++.| +++++++.+.+-.|+.+|.|+..||-
T Consensus 223 ~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiDd 261 (270)
T 2pi2_A 223 EGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDD 261 (270)
T ss_dssp ---------------------------------------
T ss_pred cCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEeccccc
Confidence 456778899878 79999999999999999999999995
No 262
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=52.14 E-value=1.4e+02 Score=27.34 Aligned_cols=85 Identities=9% Similarity=-0.062 Sum_probs=62.3
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhh---------cchhHHHHHHHHhhhhccCCCCcchHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAK---------KDYIRTQIISKKINTKFFDDEKDDVQELK 74 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~---------~D~~~a~~~~~ki~~~~~~~~~~~~~e~k 74 (303)
..|++++|...+...--- ... ...+...+.++... +++..|....+++-....+ +.+
T Consensus 149 ~~g~~~~A~~~~~~al~~-----~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~-- 214 (474)
T 4abn_A 149 KKGDVTSAHTCFSGALTH-----CKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-----DGR-- 214 (474)
T ss_dssp HHTCHHHHHHHHHHHHTT-----CCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-----CHH--
T ss_pred HcCCHHHHHHHHHHHHhh-----CCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-----CHH--
Confidence 468999999888765311 222 37788899999999 9999999999998876522 121
Q ss_pred HHHHHHHHHHHHHh--------hhHHHHHHHHHHHHcC
Q psy4458 75 LKYYRLMIELDQHE--------GSYLATCKHYRAILTT 104 (303)
Q Consensus 75 ~~y~~~~~~~~~~~--------~~f~eaa~~y~e~~~t 104 (303)
.+...+..+... ++|.+|-..|..+...
T Consensus 215 --~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 250 (474)
T 4abn_A 215 --SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250 (474)
T ss_dssp --HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 233466666666 8999999999998763
No 263
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=51.48 E-value=19 Score=27.47 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=27.2
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceE
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGII 258 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV 258 (303)
..++...||+.+|+++.-+=..+.+|...|-|.-.-|..++-.
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~ 98 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQ 98 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchh
Confidence 6799999999999999999999999999999987776655543
No 264
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=51.15 E-value=81 Score=24.22 Aligned_cols=42 Identities=10% Similarity=0.064 Sum_probs=37.5
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
..++.+.||+.+|+++.-+=..|..|...|-+.-.-|..++-
T Consensus 45 ~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR 86 (151)
T 4aik_A 45 PEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRR 86 (151)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTT
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCc
Confidence 456778999999999999999999999999998888877774
No 265
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=51.06 E-value=21 Score=26.03 Aligned_cols=35 Identities=11% Similarity=0.240 Sum_probs=32.0
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEE
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 250 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~ak 250 (303)
..++...||+.+|+|..-|-+.+..|...|-+...
T Consensus 32 ~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 32 TEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp SCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 35899999999999999999999999999998664
No 266
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=49.50 E-value=17 Score=28.41 Aligned_cols=43 Identities=12% Similarity=0.044 Sum_probs=34.5
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEE
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIIN 259 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~ 259 (303)
..++.+.||+.+|+|+..+++.+..+...|-+...=- ..|+.-
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG-~GGy~L 71 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG-PGGAGL 71 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC-CCceEe
Confidence 4689999999999999999999999999999876544 344443
No 267
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=49.43 E-value=58 Score=23.02 Aligned_cols=54 Identities=7% Similarity=-0.156 Sum_probs=36.5
Q ss_pred hcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 45 KKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 45 ~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
.|++..|....+++-.... ++ .-....+..++..+...++|-+|-..|..++..
T Consensus 3 ~g~~~~A~~~~~~al~~~~--~~----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 56 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGL--QG----KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ 56 (117)
T ss_dssp ----CCCHHHHHHHHSSCC--CH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCC--CC----ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4778888888888765321 11 122355566889999999999999999999864
No 268
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=49.01 E-value=22 Score=27.47 Aligned_cols=40 Identities=10% Similarity=0.174 Sum_probs=35.0
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEE---EecCC
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA---KIDRP 254 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~a---kIDq~ 254 (303)
-.+++...||+.+|+|+.-+-..+..|...|-|.. .+|..
T Consensus 15 ~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 15 NAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp CTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 45799999999999999999999999999998854 56753
No 269
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=48.93 E-value=1.2e+02 Score=25.51 Aligned_cols=63 Identities=13% Similarity=-0.050 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 33 TLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 33 ~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
+.+...+..++..|+|..|....+++-.... .. ..++...+..+...++|-+|-..|..++..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 67 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNP--LV-------AVYYTNRALCYLKMQQPEQALADCRRALEL 67 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--cc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4567788999999999999999998876542 11 245556888889999999999999999764
No 270
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=48.92 E-value=1.1e+02 Score=24.93 Aligned_cols=80 Identities=11% Similarity=0.049 Sum_probs=55.9
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhc------cCCCCcchHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF------FDDEKDDVQELKLKY 77 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~------~~~~~~~~~e~k~~y 77 (303)
+.|+++.|.++...+.- -..+=+..+.+|..+++.-|+....+++..- ...++ ...
T Consensus 17 ~lg~l~~A~e~a~~l~~-----------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~--~e~----- 78 (177)
T 3mkq_B 17 EYGNLDAALDEAKKLND-----------SITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGD--VNK----- 78 (177)
T ss_dssp HTTCHHHHHHHHHHHCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTC--HHH-----
T ss_pred hcCCHHHHHHHHHHhCC-----------HHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCC--HHH-----
Confidence 35899999988876643 2356678888999999999988888775321 01111 111
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Q psy4458 78 YRLMIELDQHEGSYLATCKHYRAI 101 (303)
Q Consensus 78 ~~~~~~~~~~~~~f~eaa~~y~e~ 101 (303)
..-++.....+++|.-|+.+|...
T Consensus 79 L~kla~iA~~~g~~n~af~~~l~l 102 (177)
T 3mkq_B 79 LSKMQNIAQTREDFGSMLLNTFYN 102 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCccHHHHHHHHHHc
Confidence 124677778899999999998887
No 271
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=48.32 E-value=89 Score=23.85 Aligned_cols=134 Identities=10% Similarity=-0.046 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCChH
Q psy4458 33 TLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPV 112 (303)
Q Consensus 33 ~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t~~~~~~~~ 112 (303)
+..+..+..++..|++..|....+++-....+ + ...+...+..+...++|-+|-..|..+..... + .
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-----~----~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~-~ 73 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQS-----R----GDVKLAKADCLLETKQFELAQELLATIPLEYQ---D-N 73 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-----S----HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---C-H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----c----HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---C-h
Confidence 45688999999999999999999988754421 1 23344578888999999999998888754321 1 1
Q ss_pred HHHHHHHHHHHHHHhCCCCchhhHhHHHhhhhhhcCCchHHHHHHHHhcCCcccCchHHHHHHHHhhccccc
Q psy4458 113 QRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSV 184 (303)
Q Consensus 113 ~~~~~L~~~v~~~iLs~~~~~r~~ll~~l~~~~~~~~~p~~~~L~~~f~~~~li~~~~~~~~~~~~L~~~~~ 184 (303)
.... +...+.+.-..........+...+..+|. ....+..+...+.... ++.+....|.+.+..+|-
T Consensus 74 ~~~~-~~~~~~~~~~~~~~~a~~~~~~al~~~P~--~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 74 SYKS-LIAKLELHQQAAESPELKRLEQELAANPD--NFELACELAVQYNQVG--RDEEALELLWNILKVNLG 140 (176)
T ss_dssp HHHH-HHHHHHHHHHHTSCHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTCTT
T ss_pred HHHH-HHHHHHHHhhcccchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHhCcc
Confidence 1111 11111111001111112222222333443 2233455666654332 466667778887777764
No 272
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=47.31 E-value=63 Score=23.30 Aligned_cols=43 Identities=12% Similarity=-0.025 Sum_probs=37.8
Q ss_pred hceeeHHHHHHHh-CCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 215 YTRITLQRMCDLL-GLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 215 Y~~Itl~~la~ll-~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
...+++..|++.+ |+++.-+=..|..|...|-|..+.|..++-
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r 79 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPP 79 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSC
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCC
Confidence 4679999999999 599999999999999999999888765544
No 273
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=46.87 E-value=1.6e+02 Score=26.42 Aligned_cols=136 Identities=10% Similarity=-0.049 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHcCCCCCC
Q psy4458 31 KVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGS-YLATCKHYRAILTTPCIQS 109 (303)
Q Consensus 31 k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~-f~eaa~~y~e~~~t~~~~~ 109 (303)
-.+.+.....++...+++.+|....+++-.... +. ...+...+..+...++ |-+|-..|..++...
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P--~~-------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~---- 162 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNA--AN-------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---- 162 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT--TC-------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc--cC-------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC----
Confidence 355666777888889999999999998876542 11 2334557777777885 999999999997532
Q ss_pred ChHHHHHHHHHHHHHHHhCCCCchhhHhHHHhhhhhhcCCchHHHHHHHHhcCCcccCchHHHHHHHHhhccccc
Q psy4458 110 DPVQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSV 184 (303)
Q Consensus 110 ~~~~~~~~L~~~v~~~iLs~~~~~r~~ll~~l~~~~~~~~~p~~~~L~~~f~~~~li~~~~~~~~~~~~L~~~~~ 184 (303)
+...........++.-+..+......+-..+..+|+. ...+..+..++... -+|.+....|.+.|.-++-
T Consensus 163 -P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~--~~a~~~lg~~~~~~--g~~~eAl~~~~~al~l~P~ 232 (382)
T 2h6f_A 163 -PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN--YHAWQHRQWVIQEF--KLWDNELQYVDQLLKEDVR 232 (382)
T ss_dssp -TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC--HHHHHHHHHHHHHH--TCCTTHHHHHHHHHHHCTT
T ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC--HHHHHHHHHHHHHc--CChHHHHHHHHHHHHhCCC
Confidence 1111222233455555566655555555555556643 22344444444222 1355666777777766653
No 274
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=46.83 E-value=19 Score=28.88 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=36.0
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceE
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGII 258 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV 258 (303)
..+|.+.||+.+|+|+..+++.+..+...|-+.+.=-...|+.
T Consensus 27 ~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy~ 69 (162)
T 3k69_A 27 SKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQ 69 (162)
T ss_dssp SCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeE
Confidence 4699999999999999999999999999998876544444443
No 275
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=46.23 E-value=38 Score=27.89 Aligned_cols=42 Identities=2% Similarity=-0.030 Sum_probs=35.1
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
..+|...||+.+|++..-+=..|..|...|-|.-.-|..++-
T Consensus 61 ~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR 102 (207)
T 2fxa_A 61 NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKR 102 (207)
T ss_dssp TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC-----
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCc
Confidence 579999999999999999999999999999998888766654
No 276
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=46.08 E-value=44 Score=25.26 Aligned_cols=46 Identities=7% Similarity=0.001 Sum_probs=38.2
Q ss_pred hhhcee-eHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEe
Q psy4458 213 KYYTRI-TLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINF 260 (303)
Q Consensus 213 k~Y~~I-tl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f 260 (303)
+|=..+ +...||+.||+|..-|-+.+..+..+|.|.. -+..|+...
T Consensus 30 ~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~--~~g~G~~V~ 76 (126)
T 3by6_A 30 SANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT--IPGKGTFIT 76 (126)
T ss_dssp CTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEEC
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--ecCCeEEEc
Confidence 456788 9999999999999999999999999998854 345566543
No 277
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=45.91 E-value=67 Score=21.75 Aligned_cols=65 Identities=12% Similarity=-0.087 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy4458 32 VTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 105 (303)
Q Consensus 32 ~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t~ 105 (303)
.+.+...+..++..|+|..|....+++-.... . + ...+...+..+...++|.+|-..|..++...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~---~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP--Q---N----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--T---C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C---C----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 45677889999999999999999999876542 1 2 1234567888899999999999999998654
No 278
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=45.86 E-value=84 Score=24.06 Aligned_cols=63 Identities=6% Similarity=0.068 Sum_probs=46.8
Q ss_pred hceeeHHHHHHHh-CCCHHHHHHHHHhhhhcCceEEEecCCCce-EEeccCCC------hhHHHHHHHHHH
Q psy4458 215 YTRITLQRMCDLL-GLPIEETEEFLSSMVVSKTITAKIDRPAGI-INFARNKD------PGEILNEWSASL 277 (303)
Q Consensus 215 Y~~Itl~~la~ll-~ls~~~vE~~l~~mI~~~~l~akIDq~~gi-V~f~~~~~------~~~~l~~w~~~i 277 (303)
....+++.|++.+ |+|..-+=..|..|...|-|.-+.+..++- +.+.=... .-..+.+|...=
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~~l~~l~~W~~~~ 107 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWGESN 107 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHHHHHHHHHHHHHH
Confidence 5678999999999 999999999999999999998877765543 33322211 235677887543
No 279
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=45.23 E-value=33 Score=31.61 Aligned_cols=46 Identities=9% Similarity=0.012 Sum_probs=37.1
Q ss_pred HHHHHHHH---HhhhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEE
Q psy4458 204 VEHNIRVM---AKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 249 (303)
Q Consensus 204 ~ehNi~~i---sk~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~a 249 (303)
.++|-+.+ .+-...+|-..||+.+|+|..-+-+.+.+|+..|.+.-
T Consensus 37 r~~n~~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~ 85 (429)
T 1z05_A 37 KQINAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHE 85 (429)
T ss_dssp HHHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 34454433 33467899999999999999999999999999998744
No 280
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=45.18 E-value=28 Score=31.82 Aligned_cols=46 Identities=9% Similarity=0.125 Sum_probs=37.0
Q ss_pred HHHHHHHH---HhhhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEE
Q psy4458 204 VEHNIRVM---AKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 249 (303)
Q Consensus 204 ~ehNi~~i---sk~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~a 249 (303)
.++|.+.+ .+-...+|-..||+.+|+|..-+-..+.+|+..|.+.-
T Consensus 14 r~~n~~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHhHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 44554333 34467899999999999999999999999999998743
No 281
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=45.15 E-value=42 Score=25.26 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=38.0
Q ss_pred hhhcee-eHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEec
Q psy4458 213 KYYTRI-TLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 261 (303)
Q Consensus 213 k~Y~~I-tl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~ 261 (303)
+|=..+ |...||+.||+|..-|-+.+..+..+|-|..+ +..|...-.
T Consensus 32 ~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~ 79 (125)
T 3neu_A 32 KGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK--RGMGSFVTS 79 (125)
T ss_dssp CTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECC
T ss_pred CCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe--cCCEEEEec
Confidence 456788 69999999999999999999999999988653 445655433
No 282
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=44.76 E-value=1.7e+02 Score=25.94 Aligned_cols=128 Identities=12% Similarity=0.186 Sum_probs=76.6
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhc--chhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKK--DYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLM 81 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~--D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~ 81 (303)
..|+.+.|.+.|+.++--.-.++...+-+-+.|-.+.+.+..| ++..|--+..++...+ + +|..-..++.
T Consensus 148 ~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~----p--~~~~~~lLln-- 219 (310)
T 3mv2_B 148 LNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF----P--TWKTQLGLLN-- 219 (310)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS----C--SHHHHHHHHH--
T ss_pred HCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC----C--CcccHHHHHH--
Confidence 4689999999998774210000112456667777787777766 8999998888876544 2 3323233333
Q ss_pred HHHHHHhhhHHHHHHHHHHHHcC-CCCCCC---hHHHHHHHHHHHHHHHhCCCCchhhHhHHHhhh
Q psy4458 82 IELDQHEGSYLATCKHYRAILTT-PCIQSD---PVQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLE 143 (303)
Q Consensus 82 ~~~~~~~~~f~eaa~~y~e~~~t-~~~~~~---~~~~~~~L~~~v~~~iLs~~~~~r~~ll~~l~~ 143 (303)
.+...++|-+|-..+..+... |...+- .++--.+|-++|.+....+- +-.+++.++.+
T Consensus 220 --~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 220 --LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp --HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred --HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 578899999988888755432 110000 01124467666666666543 44567777765
No 283
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=44.30 E-value=29 Score=24.45 Aligned_cols=45 Identities=4% Similarity=0.126 Sum_probs=35.6
Q ss_pred eeeHHHHHHHhCCCHHH-HHHHHHhhhhcCceE-EEecCCCceEEec
Q psy4458 217 RITLQRMCDLLGLPIEE-TEEFLSSMVVSKTIT-AKIDRPAGIINFA 261 (303)
Q Consensus 217 ~Itl~~la~ll~ls~~~-vE~~l~~mI~~~~l~-akIDq~~giV~f~ 261 (303)
.++...||+.+|++..- +=..+..|...|-+. ..-|+....|...
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT 76 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLT 76 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEEC
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEEC
Confidence 69999999999999999 999999999999997 2233443334443
No 284
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=44.06 E-value=16 Score=27.83 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=31.8
Q ss_pred eeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCC
Q psy4458 218 ITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRP 254 (303)
Q Consensus 218 Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~ 254 (303)
+|.+.||+.+|+|+..|-+.|..++..|-|.=+-|..
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~ 88 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHTD 88 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC---
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEEC
Confidence 8999999999999999999999999999886655533
No 285
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=43.85 E-value=60 Score=24.62 Aligned_cols=64 Identities=8% Similarity=0.200 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcee-eHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEec
Q psy4458 196 FKMLKHRVVEHNIRVMAKYYTRI-TLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 261 (303)
Q Consensus 196 ~~~l~~~i~ehNi~~isk~Y~~I-tl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~ 261 (303)
|..+...+.+.=+.---+|=.++ |...||+.||+|..-|-+-+..+..+|-+..+ +..|+..-.
T Consensus 16 Y~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~--~g~G~~V~~ 80 (134)
T 4ham_A 16 YEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV--KGKGTFIAN 80 (134)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE--cCcEEEEeC
Confidence 44444444442222223567788 88899999999999999999999999998764 556765433
No 286
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=43.54 E-value=91 Score=22.59 Aligned_cols=62 Identities=8% Similarity=0.049 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy4458 33 TLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 33 ~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~ 103 (303)
...-.....++..|||..|....+++-.... . + ..++.-++..+...++|.+|-..|..++.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p--~---~----~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP--S---N----ITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C---C----HHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344677889999999999999999876542 1 2 23455688889999999999998888853
No 287
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=43.04 E-value=42 Score=22.00 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=25.5
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhh
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVV 243 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~ 243 (303)
+...|.+.||+.+|+|+.-|...+.+...
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 48999999999999999999988877653
No 288
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=42.53 E-value=50 Score=24.61 Aligned_cols=35 Identities=11% Similarity=0.350 Sum_probs=32.5
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEE
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 250 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~ak 250 (303)
..+++..||+.+|+|..-+-..|..|...|.+...
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 56899999999999999999999999999998764
No 289
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=42.40 E-value=32 Score=24.36 Aligned_cols=35 Identities=11% Similarity=0.090 Sum_probs=32.0
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEE
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 250 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~ak 250 (303)
..+++..||+.+|+|..-+-..|..|...|.+...
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~ 76 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERV 76 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45899999999999999999999999999998754
No 290
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.91 E-value=82 Score=29.02 Aligned_cols=67 Identities=10% Similarity=-0.062 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCC
Q psy4458 34 LILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPC 106 (303)
Q Consensus 34 ~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t~~ 106 (303)
..+..+.+++..||+..|-....++...+.. .+ .|+.++...++.+...+||..+-..+..+-....
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-~~-----~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~ 199 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIS-TG-----AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE 199 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC-CC-----SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-hH-----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 4567888999999999999999999988843 23 4678888899999999999998888877755443
No 291
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=41.80 E-value=89 Score=26.28 Aligned_cols=95 Identities=11% Similarity=0.006 Sum_probs=62.0
Q ss_pred cCCHHHHHHHHhccccc-----ccc-CCchHH--HHHHHHHH-HHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHH
Q psy4458 5 EGDVTEAANIIQELQVE-----TYG-SMEKKE--KVTLILEQ-MRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKL 75 (303)
Q Consensus 5 ~~~~~~Aa~~L~~i~ve-----t~~-~~~~~~--k~~~~L~~-~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~ 75 (303)
.+|++.|.++|..+.++ ++. +-+..+ -...++++ +|++++.+|....+.+..++.+.+.+... ....+.
T Consensus 20 ~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~--~s~~~~ 97 (229)
T 4b0z_A 20 RKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLV--PSSRMG 97 (229)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCC--CCTTHH
T ss_pred hccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCC--CCccHH
Confidence 47999999999987543 121 122221 22344554 77799999999999999999998854311 112445
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy4458 76 KYYRLMIELDQHEGSYLATCKHYRAIL 102 (303)
Q Consensus 76 ~y~~~~~~~~~~~~~f~eaa~~y~e~~ 102 (303)
.+..|...|+...++.-+-. .+++.+
T Consensus 98 e~~~~~LL~lL~~~~~~ef~-~~le~l 123 (229)
T 4b0z_A 98 LVTGLNLLYLLSENRIAEFH-TALESV 123 (229)
T ss_dssp HHHHHHHHHHHHTTCHHHHH-HHHHHC
T ss_pred HHHHHHHHHHHHcCCchHHH-HHHHhc
Confidence 66777788888888877643 334443
No 292
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=41.19 E-value=62 Score=22.36 Aligned_cols=53 Identities=9% Similarity=-0.103 Sum_probs=40.2
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhc
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 62 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~ 62 (303)
..|++++|...+...---... -.+.+...+.++...|++..|....+++-...
T Consensus 19 ~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 19 KHDNASRALALFEELVETDPD------YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 468999999988875321111 12477888999999999999999999987665
No 293
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=40.38 E-value=63 Score=26.22 Aligned_cols=43 Identities=12% Similarity=0.217 Sum_probs=35.2
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEecc
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 262 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~ 262 (303)
-.+|-+.||..+|+|++-+-+.+.+|..+|-|.- ..|.|...+
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d 221 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSERMLAL----DGKRIKIID 221 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE----ETTEEEESC
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEee----CCCEEEEeC
Confidence 4678999999999999999999999999998743 245566554
No 294
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=40.32 E-value=46 Score=29.30 Aligned_cols=74 Identities=9% Similarity=-0.110 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCC-----CCc---chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy4458 31 KVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDD-----EKD---DVQELKLKYYRLMIELDQHEGSYLATCKHYRAIL 102 (303)
Q Consensus 31 k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~-----~~~---~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~ 102 (303)
..+.+...+..++..++|..|....+++-....+. .+. ....++...+..++..+...++|-+|-.+|..++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34456778888889999999999988876543110 000 0112233466678889999999999999999987
Q ss_pred cC
Q psy4458 103 TT 104 (303)
Q Consensus 103 ~t 104 (303)
..
T Consensus 258 ~~ 259 (338)
T 2if4_A 258 TE 259 (338)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 295
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=39.75 E-value=52 Score=19.19 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=23.6
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhh
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVV 243 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~ 243 (303)
....+...+|+.+|+|..-|...+...-.
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIRVYLKDPVS 47 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHCSTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHhhHHh
Confidence 45679999999999999988887765433
No 296
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=39.40 E-value=43 Score=25.99 Aligned_cols=42 Identities=14% Similarity=0.069 Sum_probs=38.2
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCc
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 256 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~g 256 (303)
....+++.|++.+|+|..-+=..|..|...|-|....+..++
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGS 76 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSS
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 467899999999999999999999999999999988876665
No 297
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=39.35 E-value=91 Score=22.32 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=33.3
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEec
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKID 252 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akID 252 (303)
..+++..||+.+|+|..-+-..+..|...|.+...-+
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ 74 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4589999999999999999999999999999977544
No 298
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=39.06 E-value=25 Score=21.47 Aligned_cols=25 Identities=8% Similarity=0.154 Sum_probs=21.5
Q ss_pred eeeHHHHHHHhCCCHHHHHHHHHhh
Q psy4458 217 RITLQRMCDLLGLPIEETEEFLSSM 241 (303)
Q Consensus 217 ~Itl~~la~ll~ls~~~vE~~l~~m 241 (303)
.+++..+|..+|+++.++-..+.++
T Consensus 2 k~rv~~lAkel~~~~k~l~~~l~~~ 26 (49)
T 1nd9_A 2 DVTIKTLAAERQTSVERLVQQFADA 26 (49)
T ss_dssp EECTTHHHHHHSSSHHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHHc
Confidence 4788999999999999988877765
No 299
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=39.05 E-value=40 Score=28.70 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=38.7
Q ss_pred hhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEec
Q psy4458 214 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 261 (303)
Q Consensus 214 ~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~ 261 (303)
.....|.+.||+.+|+|+..|+..+.+|...|-+. -..+|.|...
T Consensus 175 ~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~---~~~~~~~~~~ 219 (232)
T 2qlz_A 175 LNGRATVEELSDRLNLKEREVREKISEMARFVPVK---IINDNTVVLD 219 (232)
T ss_dssp HSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE---EETTTEEEEC
T ss_pred hcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE---EecCCeEEec
Confidence 36889999999999999999999999999999886 2346677665
No 300
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=38.88 E-value=1.2e+02 Score=22.76 Aligned_cols=124 Identities=10% Similarity=0.004 Sum_probs=65.6
Q ss_pred HhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHH
Q psy4458 43 LAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNVV 122 (303)
Q Consensus 43 L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t~~~~~~~~~~~~~L~~~v 122 (303)
+..+++..|....+++-.... .. ...+...+..+...++|.+|..+|..++..... ++ ...+..+.
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p--~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~---~~~~~la~ 86 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP--QN-------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--NA---ELYAALAT 86 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC--SC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--CH---HHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCC--Cc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CH---HHHHHHHH
Confidence 456888888888888765442 11 134556888889999999999999998754321 21 11122222
Q ss_pred H-HHHhCCC-CchhhHhHHHh-hhhhhcCCchHHHHHHHHhcCCcccCchHHHHHHHHhhccccc
Q psy4458 123 L-YLMLAPY-DNEQSDLTHRV-LEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSV 184 (303)
Q Consensus 123 ~-~~iLs~~-~~~r~~ll~~l-~~~~~~~~~p~~~~L~~~f~~~~li~~~~~~~~~~~~L~~~~~ 184 (303)
+ +.-...+ ..+-...+.+. ..+|.. ...+..+...+.... ++......|...+..+|-
T Consensus 87 ~l~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 87 VLYYQASQHMTAQTRAMIDKALALDSNE--ITALMLLASDAFMQA--NYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCCT
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcc--cHHHHHHHHHHHHhhCCC
Confidence 2 3333343 12222233333 334432 234555666654332 466666777777765553
No 301
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=38.84 E-value=1e+02 Score=21.75 Aligned_cols=39 Identities=8% Similarity=0.123 Sum_probs=34.5
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCC
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRP 254 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~ 254 (303)
...++..||+.+|+|..-+-..|..|...|-+...-+..
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~ 73 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIK 73 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 458999999999999999999999999999998765443
No 302
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=38.37 E-value=29 Score=24.61 Aligned_cols=48 Identities=19% Similarity=0.378 Sum_probs=34.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEeccCCChhHHHHHHHH----HHHHHHHHHHHHHh
Q psy4458 220 LQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSA----SLNELMKLVNNTTH 289 (303)
Q Consensus 220 l~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~w~~----~i~~l~~~v~~~~~ 289 (303)
-..||+.+|++..+++.+-.. +++....|+.|.. .+..|+..+.++++
T Consensus 24 W~~LA~~Lg~~~~~I~~~~~~----------------------~~pt~~lL~~W~~r~~atv~~L~~aL~~igR 75 (85)
T 1ngr_A 24 WRHLAGELGYQPEHIDSFTHE----------------------ACPVRALLASWGAQDSATLDALLAALRRIQR 75 (85)
T ss_dssp HHHHHHHTTCCHHHHHHHHHS----------------------SCHHHHHHHHGGGSTTCBHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCHHHHHHHHcC----------------------CCHHHHHHHHHHhCCCCCHHHHHHHHHHcCc
Confidence 357899999999888876531 2345678999976 37777777766544
No 303
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=38.35 E-value=71 Score=24.47 Aligned_cols=83 Identities=8% Similarity=-0.062 Sum_probs=46.0
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHH-hhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCL-AKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMI 82 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L-~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~ 82 (303)
..|++++|...+..+.-.. . +. .. ..-...+.+ ..++...+....+++-.... + +. ..+...+
T Consensus 52 ~~g~~~~A~~~~~~a~~~~-p--~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~al~~~P--~---~~----~~~~~la 115 (176)
T 2r5s_A 52 ETKQFELAQELLATIPLEY-Q--DN--SY--KSLIAKLELHQQAAESPELKRLEQELAANP--D---NF----ELACELA 115 (176)
T ss_dssp HTTCHHHHHHHHTTCCGGG-C--CH--HH--HHHHHHHHHHHHHTSCHHHHHHHHHHHHST--T---CH----HHHHHHH
T ss_pred HCCCHHHHHHHHHHhhhcc-C--Ch--HH--HHHHHHHHHHhhcccchHHHHHHHHHHhCC--C---CH----HHHHHHH
Confidence 5689999999998863211 1 11 11 111222322 22233345556666654331 1 11 2233467
Q ss_pred HHHHHhhhHHHHHHHHHHHH
Q psy4458 83 ELDQHEGSYLATCKHYRAIL 102 (303)
Q Consensus 83 ~~~~~~~~f~eaa~~y~e~~ 102 (303)
..+...++|-+|-..|..+.
T Consensus 116 ~~~~~~g~~~~A~~~~~~~l 135 (176)
T 2r5s_A 116 VQYNQVGRDEEALELLWNIL 135 (176)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHH
Confidence 77788888888888888776
No 304
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=37.97 E-value=65 Score=24.44 Aligned_cols=45 Identities=11% Similarity=0.165 Sum_probs=37.4
Q ss_pred hhhcee-eHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEE
Q psy4458 213 KYYTRI-TLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIIN 259 (303)
Q Consensus 213 k~Y~~I-tl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~ 259 (303)
+|=..+ +...||+.||+|..-|-+.+..+..+|-|.. -+..|...
T Consensus 23 ~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~--~~g~G~~V 68 (129)
T 2ek5_A 23 SIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYK--KRGIGMFV 68 (129)
T ss_dssp CTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEE--ETTTEEEE
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE--ecCCEEEE
Confidence 456788 8999999999999999999999999998854 34556544
No 305
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=37.39 E-value=56 Score=26.73 Aligned_cols=35 Identities=11% Similarity=0.290 Sum_probs=33.1
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEE
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 250 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~ak 250 (303)
..+|...||+.+|+|+.-+-..+..|...|-|...
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 67999999999999999999999999999999765
No 306
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=37.05 E-value=51 Score=24.71 Aligned_cols=36 Identities=11% Similarity=0.029 Sum_probs=32.5
Q ss_pred hhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEE
Q psy4458 214 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 249 (303)
Q Consensus 214 ~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~a 249 (303)
.-..+++..||+.+|+|..-+-..+..|...|-+.-
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r 63 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKK 63 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEe
Confidence 346799999999999999999999999999998764
No 307
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=37.02 E-value=49 Score=20.89 Aligned_cols=29 Identities=17% Similarity=0.175 Sum_probs=24.6
Q ss_pred hhceeeHHHHHHHhCCCHHHHHHHHHhhh
Q psy4458 214 YYTRITLQRMCDLLGLPIEETEEFLSSMV 242 (303)
Q Consensus 214 ~Y~~Itl~~la~ll~ls~~~vE~~l~~mI 242 (303)
++.-.|.+.+|+.+|+|+.-|...+....
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 46778999999999999999988877654
No 308
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=36.89 E-value=31 Score=27.48 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=29.8
Q ss_pred eeeHHHHHHHhCCCHHHHHHHHHhhhhcCceE
Q psy4458 217 RITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 248 (303)
Q Consensus 217 ~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~ 248 (303)
.+|-+.||..+|+|++-+-+.+.+|..+|-|.
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 195 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVH 195 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 57889999999999999999999999999874
No 309
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=36.70 E-value=28 Score=31.54 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=35.5
Q ss_pred HHHHHHHHH---HHHHHhhhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEE
Q psy4458 199 LKHRVVEHN---IRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 249 (303)
Q Consensus 199 l~~~i~ehN---i~~isk~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~a 249 (303)
+-+++..+| |....+ ...+|-..||+.+|+|..-+-+.+.+|+.+|.+.-
T Consensus 13 ~~~~~~~~~~~~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~ 65 (380)
T 2hoe_A 13 MPKSVRAENISRILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVE 65 (380)
T ss_dssp ---------CCCSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred CchhHHHHHHHHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 334555555 334445 78999999999999999999999999999998844
No 310
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=36.59 E-value=49 Score=24.10 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=37.1
Q ss_pred hhhcee-eHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEE
Q psy4458 213 KYYTRI-TLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIIN 259 (303)
Q Consensus 213 k~Y~~I-tl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~ 259 (303)
++=..+ +...||+.||+|..-|-+.+..+..+|.|...=.-..|+..
T Consensus 38 ~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V 85 (102)
T 2b0l_A 38 DGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYI 85 (102)
T ss_dssp BTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEE
T ss_pred cCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEE
Confidence 445666 99999999999999999999999999998664321345544
No 311
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=36.07 E-value=76 Score=28.39 Aligned_cols=76 Identities=12% Similarity=-0.056 Sum_probs=50.0
Q ss_pred chHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcc-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy4458 27 EKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDD-VQELKLKYYRLMIELDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 27 ~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~-~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~ 103 (303)
+...+..++--++.++...|++..|-...+|+-.......+++ +... ..-+.-.+..|...++|.+|-.+|..+..
T Consensus 46 ~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~-~~~~~nla~~y~~~g~~~~A~~~~~ka~~ 122 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRS-LVTWGNYAWVYYHMGRLSDVQIYVDKVKH 122 (472)
T ss_dssp C---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTT-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4556677777889999999999999999998865432211100 1111 22334467788889999999888876653
No 312
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=35.92 E-value=72 Score=22.22 Aligned_cols=36 Identities=11% Similarity=0.082 Sum_probs=32.5
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEE
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 250 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~ak 250 (303)
=...|...||..||+|-..|-+.|-.|-..|.+...
T Consensus 27 ~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 27 NDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp TCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecC
Confidence 445999999999999999999999999999988764
No 313
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=35.90 E-value=73 Score=20.63 Aligned_cols=53 Identities=15% Similarity=0.001 Sum_probs=39.2
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhc
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 62 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~ 62 (303)
..|++++|...+...---... -...+...+.++...+++..|....+++-...
T Consensus 21 ~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 21 KQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 468899998887765311101 13567788999999999999999999987654
No 314
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=35.90 E-value=45 Score=22.21 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=23.6
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhh
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMV 242 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI 242 (303)
...|.+.||+.+|+|+.-|...+....
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~ 55 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKAL 55 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 789999999999999999988776554
No 315
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=35.79 E-value=96 Score=21.63 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=32.0
Q ss_pred hceeeHHHHHHHhCCCHH-HHHHHHHhhhhcCceEE
Q psy4458 215 YTRITLQRMCDLLGLPIE-ETEEFLSSMVVSKTITA 249 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~-~vE~~l~~mI~~~~l~a 249 (303)
-...|-..||+.||+|+. .|-..|..|-.+|.+..
T Consensus 23 ~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~ 58 (79)
T 1xmk_A 23 VSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYR 58 (79)
T ss_dssp TCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEE
T ss_pred cCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEe
Confidence 456899999999999999 99999999999999973
No 316
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=35.59 E-value=29 Score=27.60 Aligned_cols=33 Identities=21% Similarity=0.475 Sum_probs=28.5
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEE-Eec
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA-KID 252 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~a-kID 252 (303)
.-+|+..+|+.||+|... +-+||.+|+|.| |++
T Consensus 30 ~~LTv~EVAe~LgVs~sr----V~~LIr~G~L~AVr~G 63 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSK----VAQQLREGHLVAVRRA 63 (148)
T ss_dssp CEEEHHHHHHHHTCCHHH----HHHHHHTTSCCCEEET
T ss_pred ceEcHHHHHHHhCCCHHH----HHHHHHCCCceEEEEC
Confidence 568999999999999876 556899999988 886
No 317
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=35.11 E-value=39 Score=26.96 Aligned_cols=39 Identities=5% Similarity=0.127 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhh-hceeeHHHHHHHhCCCHH
Q psy4458 194 KCFKMLKHRVVEHNIRVMAKY-YTRITLQRMCDLLGLPIE 232 (303)
Q Consensus 194 ~~~~~l~~~i~ehNi~~isk~-Y~~Itl~~la~ll~ls~~ 232 (303)
.+-..-+.+|++-=+..+.+. |..+|++.||+..|+|..
T Consensus 8 ~r~~~~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvsk~ 47 (211)
T 3bhq_A 8 TRSARKDREIIQAATAAFISKGYDGTSMEEIATKAGASKQ 47 (211)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHH
T ss_pred CccHhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHH
Confidence 334455666777666666654 999999999999999954
No 318
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=35.06 E-value=34 Score=27.42 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=35.9
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEecc
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 262 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~ 262 (303)
--.+|-+.||+.+|+|++-+-+.+.+|-.+|-|.- ..|.|...+
T Consensus 161 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d 204 (216)
T 4ev0_A 161 LFQIRHHELAALAGTSRETVSRVLHALAEEGVVRL----GPGTVEVRE 204 (216)
T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE----ETTEEEESC
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----cCCEEEEeC
Confidence 35678999999999999999999999999998852 245565554
No 319
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=34.67 E-value=28 Score=24.65 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhhhcCceEEEec
Q psy4458 231 IEETEEFLSSMVVSKTITAKID 252 (303)
Q Consensus 231 ~~~vE~~l~~mI~~~~l~akID 252 (303)
...||..|..|...|+|.++||
T Consensus 36 A~~VE~~Li~lAq~Gqi~~ki~ 57 (80)
T 1eij_A 36 VEQIELQLIQLAQMGRVRSKIT 57 (80)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCC
T ss_pred HHHHHHHHHHHHHcCCCCCCcC
Confidence 3578999999999999999886
No 320
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=34.60 E-value=36 Score=27.14 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=30.0
Q ss_pred eeeHHHHHHHhCCCHHHHHHHHHhhhhcCceE
Q psy4458 217 RITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 248 (303)
Q Consensus 217 ~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~ 248 (303)
.+|-+.||+.+|+|++-+-+.+.+|-.+|-|.
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 198 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 67889999999999999999999999999875
No 321
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=34.48 E-value=35 Score=27.48 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=35.1
Q ss_pred eeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEecc
Q psy4458 217 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 262 (303)
Q Consensus 217 ~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~ 262 (303)
.+|-+.||+.+|+|++-+-+.+.+|-.+|-|.- ..|.|...+
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d 210 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKL----SRGKITILD 210 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEESC
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----CCCEEEEeC
Confidence 678899999999999999999999999998843 355565554
No 322
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=33.98 E-value=29 Score=26.77 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=23.9
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHh
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSS 240 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~ 240 (303)
|=+.+++.+|..+|++++++|..+..
T Consensus 37 YL~~~l~eia~~l~~~~~eve~vL~~ 62 (130)
T 2k9m_A 37 FLSKSVEEISDVLRCSVEELEKVRQK 62 (130)
T ss_dssp SBSSCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 88999999999999999999998763
No 323
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=33.87 E-value=38 Score=27.02 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=35.0
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEecc
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 262 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~ 262 (303)
-.+|-+.||+.+|+|++-+-+.+.+|..+|-|.- ..|.|...+
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d 187 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELAREGYIRS----GYGKIQLLD 187 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEESC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----CCCEEEEeC
Confidence 3478899999999999999999999999998852 245565543
No 324
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=33.70 E-value=98 Score=20.48 Aligned_cols=30 Identities=7% Similarity=0.052 Sum_probs=25.8
Q ss_pred hhceeeHHHHHHHhCCCHHHHHHHHHhhhh
Q psy4458 214 YYTRITLQRMCDLLGLPIEETEEFLSSMVV 243 (303)
Q Consensus 214 ~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~ 243 (303)
++.-.|.+.+|+.+|+|+.-|...+.+...
T Consensus 28 ~~~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 28 VVAGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp HTTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 578899999999999999999888776653
No 325
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=33.65 E-value=47 Score=25.10 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=31.7
Q ss_pred hhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCc-eE
Q psy4458 214 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKT-IT 248 (303)
Q Consensus 214 ~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~-l~ 248 (303)
+=.-.+++.||..-|+++..++..+..++.+|. ++
T Consensus 29 ~~~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~~l~ 64 (122)
T 3iuo_A 29 IDRKVALDDIAVSHGLDFPELLSEVETIVYSGTRIN 64 (122)
T ss_dssp HHTTCCHHHHHHHTTCCHHHHHHHHHHHHHTTCCCC
T ss_pred HHcCCCHHHHHHHcCCCHHHHHHHHHHHHHcCCccC
Confidence 457889999999999999999999999999995 43
No 326
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=33.27 E-value=14 Score=26.24 Aligned_cols=22 Identities=23% Similarity=0.524 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhhhcCceEEEec
Q psy4458 231 IEETEEFLSSMVVSKTITAKID 252 (303)
Q Consensus 231 ~~~vE~~l~~mI~~~~l~akID 252 (303)
...||..|..|...|+|.++||
T Consensus 34 A~~VE~~Li~lAq~Gqi~~ki~ 55 (81)
T 2fh0_A 34 AQAVETYLKKLIATNNVTHKIT 55 (81)
T ss_dssp HHHHHHHHHHHHHHTCCSCCBC
T ss_pred HHHHHHHHHHHHHcCCCCCCcC
Confidence 4688999999999999998876
No 327
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=33.26 E-value=37 Score=27.66 Aligned_cols=43 Identities=7% Similarity=0.070 Sum_probs=34.8
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEecc
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 262 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~ 262 (303)
-.+|-+.||..+|+|++-+-+.+.+|-.+|-|.- + .|.|...+
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~--~--~~~i~i~d 216 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRLEAHNILEV--S--PRSVTLLD 216 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--C--SSCEEESC
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe--c--CCEEEEeC
Confidence 4578999999999999999999999999998853 2 34455443
No 328
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=33.14 E-value=26 Score=25.27 Aligned_cols=44 Identities=7% Similarity=0.164 Sum_probs=35.9
Q ss_pred hhcee-eHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEE
Q psy4458 214 YYTRI-TLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIIN 259 (303)
Q Consensus 214 ~Y~~I-tl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~ 259 (303)
+=..+ +...||+.||+|..-|-+.+..+...|-|..+ +..|...
T Consensus 31 ~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~--~g~G~~v 75 (102)
T 1v4r_A 31 PGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSR--GALGTVV 75 (102)
T ss_dssp TTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEE--TTTEEES
T ss_pred CcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCCeEEE
Confidence 44677 99999999999999999999999999988653 3346543
No 329
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=32.75 E-value=40 Score=27.34 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=29.7
Q ss_pred eeeHHHHHHHhCCCHHHHHHHHHhhhhcCceE
Q psy4458 217 RITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 248 (303)
Q Consensus 217 ~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~ 248 (303)
.+|-+.||+.+|+|++-+-+.+.+|-.+|-|.
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 218 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLH 218 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 47889999999999999999999999999885
No 330
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=32.59 E-value=38 Score=27.50 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=34.4
Q ss_pred eeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEecc
Q psy4458 217 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 262 (303)
Q Consensus 217 ~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~ 262 (303)
.+|-+.||+.+|+|++-+-+.+.+|..+|-|.- ..|.|...+
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d 218 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIRL----EGKSVLISD 218 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE----ETTEEEESC
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe----cCCEEEEcC
Confidence 478899999999999999999999999998743 345555543
No 331
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=32.48 E-value=1.2e+02 Score=21.33 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=34.7
Q ss_pred HHHHHhhhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceE
Q psy4458 208 IRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 248 (303)
Q Consensus 208 i~~isk~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~ 248 (303)
+.++...=+=++-..||+.+|++-.+|.+.+-+|=.+|+|.
T Consensus 25 Le~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 25 LQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVS 65 (80)
T ss_dssp HHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCcc
Confidence 34555556678999999999999999999999999999874
No 332
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=31.98 E-value=33 Score=27.24 Aligned_cols=42 Identities=10% Similarity=0.104 Sum_probs=34.2
Q ss_pred eeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEecc
Q psy4458 217 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 262 (303)
Q Consensus 217 ~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~ 262 (303)
.+|-+.||+.+|+|++-+-+.+.+|..+|-|.- ..|.|...+
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d 180 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIAT----AYRRVYLLD 180 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEE----ETTEEEECC
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----cCCEEEEeC
Confidence 478899999999999999999999999998743 245555543
No 333
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=31.93 E-value=1.6e+02 Score=21.89 Aligned_cols=63 Identities=17% Similarity=0.251 Sum_probs=42.5
Q ss_pred hhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEeccCCChhHHHHHHHHHHHHHHHH
Q psy4458 214 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKL 283 (303)
Q Consensus 214 ~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~w~~~i~~l~~~ 283 (303)
.+. +..+.++..+|+++++++..+..++..|++..- +..++...+.. +....|..++...+..
T Consensus 15 ~~~-~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~-~~~~~~~~~~~-----~~~~~l~~~l~~~L~~ 77 (135)
T 2v9v_A 15 REG-LDWQEAATRASLSLEETRKLLQSMAAAGQVTLL-RVENDLYAIST-----ERYQAWWQAVTRALEE 77 (135)
T ss_dssp SSC-EEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEE-EETTEEEEEEH-----HHHHHHHHHHHHHHHH
T ss_pred CcC-CCHHHHHHHhCCCHHHHHHHHHHHHhCCcEEEE-ecCCCeEEecH-----HHHHHHHHHHHHHHHH
Confidence 344 444999999999999999999999999996543 32122212332 4566666666555554
No 334
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=31.90 E-value=76 Score=20.91 Aligned_cols=32 Identities=13% Similarity=0.289 Sum_probs=28.1
Q ss_pred eeeHHHHHHHhCCCHHHHHHHHHhhhhcCceE
Q psy4458 217 RITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 248 (303)
Q Consensus 217 ~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~ 248 (303)
-+.++..+.-+|++.++|-..|-++=..|-|.
T Consensus 25 ildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 25 FLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp EEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred EEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 46788999999999999999999998888664
No 335
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=31.84 E-value=44 Score=21.63 Aligned_cols=29 Identities=7% Similarity=0.132 Sum_probs=24.4
Q ss_pred hhceeeHHHHHHHhCCCHHHHHHHHHhhh
Q psy4458 214 YYTRITLQRMCDLLGLPIEETEEFLSSMV 242 (303)
Q Consensus 214 ~Y~~Itl~~la~ll~ls~~~vE~~l~~mI 242 (303)
++...|.+.+|+.+|+|+.-|...+.+..
T Consensus 28 ~~~g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 28 QLLGLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 57789999999999999998887766543
No 336
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=31.74 E-value=40 Score=27.94 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=34.7
Q ss_pred eeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEeccC
Q psy4458 217 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARN 263 (303)
Q Consensus 217 ~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~~ 263 (303)
.+|-+.||+.+|+|++-+-+.+.+|..+|-|.- ..|.|...++
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~----~~~~i~I~d~ 235 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREKKMISI----HKKKITVHKP 235 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEECC-
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEE----cCCEEEECCH
Confidence 578899999999999999999999999998863 2455555444
No 337
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=31.56 E-value=74 Score=25.88 Aligned_cols=40 Identities=10% Similarity=0.138 Sum_probs=32.2
Q ss_pred eeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEecc
Q psy4458 218 ITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 262 (303)
Q Consensus 218 Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~ 262 (303)
+|-+.||..+|++++-+-+.+.+|-.+| | ..+ .|.|...+
T Consensus 179 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g-i--~~~--~~~i~I~d 218 (237)
T 3fx3_A 179 YDKMLIAGRLGMKPESLSRAFSRLKAAG-V--TVK--RNHAEIED 218 (237)
T ss_dssp SCTHHHHHHTTCCHHHHHHHHHHHGGGT-E--ECC--TTEEEESC
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCC-e--Eee--CCEEEEcC
Confidence 4568999999999999999999999999 6 333 45565543
No 338
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=31.35 E-value=64 Score=23.43 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=24.0
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhh
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVV 243 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~ 243 (303)
...|++.||+.+|+|+.-|...+.+.+.
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlk 65 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALR 65 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6799999999999999999888766543
No 339
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=31.02 E-value=54 Score=22.77 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=24.5
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhh
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMV 242 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI 242 (303)
...|...||+.+|+|+.-|...+.+..
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~ 63 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKAL 63 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 789999999999999999998887765
No 340
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=30.85 E-value=2e+02 Score=23.33 Aligned_cols=82 Identities=12% Similarity=-0.012 Sum_probs=58.3
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHh----hcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLA----KKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYR 79 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~----~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~ 79 (303)
..|++++|...+...-- .+ -.+.+...+.++.. .+|+..|..+.+++...- . ..-+.
T Consensus 18 ~~~~~~~A~~~~~~a~~--~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~-------~~a~~ 78 (273)
T 1ouv_A 18 KEKDFTQAKKYFEKACD--LK------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----Y-------SNGCH 78 (273)
T ss_dssp HTTCHHHHHHHHHHHHH--TT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C-------HHHHH
T ss_pred hCCCHHHHHHHHHHHHH--CC------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----C-------HHHHH
Confidence 45788888888876532 11 12456778888888 999999999998886431 1 11233
Q ss_pred HHHHHHHH----hhhHHHHHHHHHHHHcC
Q psy4458 80 LMIELDQH----EGSYLATCKHYRAILTT 104 (303)
Q Consensus 80 ~~~~~~~~----~~~f~eaa~~y~e~~~t 104 (303)
..+..+.. .+++.+|...|..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 107 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDL 107 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHc
Confidence 46777777 89999999999988753
No 341
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=30.65 E-value=1.3e+02 Score=22.52 Aligned_cols=32 Identities=3% Similarity=0.185 Sum_probs=26.9
Q ss_pred HHhhhceeeHHHHHHHhCCCHHHHHHHHHhhh
Q psy4458 211 MAKYYTRITLQRMCDLLGLPIEETEEFLSSMV 242 (303)
Q Consensus 211 isk~Y~~Itl~~la~ll~ls~~~vE~~l~~mI 242 (303)
+..++.-.|...||+.+|+|+.-|...+.+..
T Consensus 118 ~~~~~~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 118 LTYLIRGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp HHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33578999999999999999999988776653
No 342
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=29.86 E-value=1.8e+02 Score=21.99 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=31.6
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEE
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 250 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~ak 250 (303)
..++...||+.+|+|..-+-..+..|...|-+...
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~ 87 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMI 87 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEe
Confidence 56899999999999999999999999999977654
No 343
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=29.78 E-value=41 Score=27.30 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=29.5
Q ss_pred eeeHHHHHHHhCCCHHHHHHHHHhhhhcCceE
Q psy4458 217 RITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 248 (303)
Q Consensus 217 ~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~ 248 (303)
.+|-+.||+.+|+|++-+-+.+.+|..+|-|.
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 47889999999999999999999999999774
No 344
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=29.64 E-value=1.7e+02 Score=21.62 Aligned_cols=37 Identities=8% Similarity=0.205 Sum_probs=33.1
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEec
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKID 252 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akID 252 (303)
...++..||+.+|+|..-+-..|..+...|-+...-+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 3689999999999999999999999999999877544
No 345
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=29.50 E-value=44 Score=26.98 Aligned_cols=43 Identities=9% Similarity=0.141 Sum_probs=34.1
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCC-CceEEecc
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRP-AGIINFAR 262 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~-~giV~f~~ 262 (303)
-.+|-+.||+.+|+|++-+-+.+.+|..+|-|. .. .|.|...+
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~~i~i~d 209 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKMGILE----RVNQRTLLLKD 209 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----ESSSSEEEESC
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE----EcCCCEEEEcC
Confidence 357889999999999999999999999999763 22 34555543
No 346
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=29.42 E-value=48 Score=26.22 Aligned_cols=40 Identities=10% Similarity=0.107 Sum_probs=32.5
Q ss_pred eeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCc
Q psy4458 217 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 256 (303)
Q Consensus 217 ~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~g 256 (303)
.++...||+.+|++..-+=..|..|...|-|.-.-|..++
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 125 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDR 125 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-----
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCC
Confidence 3999999999999999999999999999999776554444
No 347
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=29.37 E-value=1.6e+02 Score=21.22 Aligned_cols=35 Identities=6% Similarity=0.156 Sum_probs=31.7
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEE
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 250 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~ak 250 (303)
...++..+|+.+|+|..-+-..|..|...|.+.-.
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 37899999999999999999999999999988653
No 348
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=29.32 E-value=44 Score=27.42 Aligned_cols=33 Identities=9% Similarity=0.093 Sum_probs=30.3
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceE
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 248 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~ 248 (303)
-.+|-+.||+.+|+|++-+-+.+.+|..+|-|.
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~ 217 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDNGLIE 217 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCE
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEE
Confidence 357899999999999999999999999999875
No 349
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=29.15 E-value=1.8e+02 Score=21.63 Aligned_cols=44 Identities=2% Similarity=0.018 Sum_probs=36.3
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEec
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 261 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~ 261 (303)
...++...||+.+|+|+.-+-..+..|...|-|.-. +++.+...
T Consensus 20 ~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~LT 63 (142)
T 1on2_A 20 KGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLT 63 (142)
T ss_dssp HSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE---TTTEEEEC
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe---eCceEEEc
Confidence 456999999999999999999999999999988664 23455544
No 350
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=29.11 E-value=38 Score=27.39 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=30.1
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceE
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 248 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~ 248 (303)
-.+|-+.||+.+|+|++-+-+.+.+|-.+|-|.
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 209 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIH 209 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEE
Confidence 356889999999999999999999999999884
No 351
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=28.97 E-value=68 Score=24.78 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHH-hhhceeeHHHHHHHhCCCHH
Q psy4458 198 MLKHRVVEHNIRVMA-KYYTRITLQRMCDLLGLPIE 232 (303)
Q Consensus 198 ~l~~~i~ehNi~~is-k~Y~~Itl~~la~ll~ls~~ 232 (303)
.-+.+|++-=+..+. +-|..+|++.||+..|+|..
T Consensus 7 ~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~ 42 (199)
T 3qbm_A 7 ETRERVVAQAAALFNVSGYAGTAISDIMAATGLEKG 42 (199)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHH
T ss_pred hHHHHHHHHHHHHHHHhCcCcCCHHHHHHHhCCCcc
Confidence 344556665555555 45999999999999999944
No 352
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=28.80 E-value=84 Score=20.43 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=24.1
Q ss_pred hhceeeHHHHHHHhCCCHHHHHHHHHhhh
Q psy4458 214 YYTRITLQRMCDLLGLPIEETEEFLSSMV 242 (303)
Q Consensus 214 ~Y~~Itl~~la~ll~ls~~~vE~~l~~mI 242 (303)
++...|...+|+.+|+|+.-|...+....
T Consensus 23 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 23 LVQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35667999999999999999888877654
No 353
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=28.59 E-value=50 Score=23.10 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=25.5
Q ss_pred hhhceeeHHHHHHHhCCCHHHHHHHHHhhh
Q psy4458 213 KYYTRITLQRMCDLLGLPIEETEEFLSSMV 242 (303)
Q Consensus 213 k~Y~~Itl~~la~ll~ls~~~vE~~l~~mI 242 (303)
.++.-.|...||+.+|+|+.-|...+.+..
T Consensus 49 ~~~~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 49 SYYRGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp HHTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 368899999999999999998887776643
No 354
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=28.33 E-value=87 Score=21.16 Aligned_cols=44 Identities=11% Similarity=0.155 Sum_probs=35.7
Q ss_pred ceeeHHHHHHHh-----CCCHHHHHHHHHhhhhcCceEEEecCCCceEEe
Q psy4458 216 TRITLQRMCDLL-----GLPIEETEEFLSSMVVSKTITAKIDRPAGIINF 260 (303)
Q Consensus 216 ~~Itl~~la~ll-----~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f 260 (303)
.-+|.+.|++.+ ++|..-|-..|..|...|.+.- +.-.+|...|
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~-~~~~~~~~~y 80 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR-HNFEGGKSVF 80 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE-EECGGGCEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE-EeeCCCceEe
Confidence 468999999999 9999999999999999998864 4444444444
No 355
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=28.32 E-value=1.8e+02 Score=24.59 Aligned_cols=63 Identities=11% Similarity=0.043 Sum_probs=39.1
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEeccCC----ChhHHHHHHHHHHHH
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNK----DPGEILNEWSASLNE 279 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~~~----~~~~~l~~w~~~i~~ 279 (303)
...+|++.||+.+|+|..-+-+.+..|...|-+... +..+.+.....- .....+.-|.+....
T Consensus 164 ~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~--~r~~~~~LT~~G~~l~~~~~~~~~w~~aq~~ 230 (244)
T 2wte_A 164 TKGTGITELAKMLDKSEKTLINKIAELKKFGILTQK--GKDRKVELNELGLNVIKLNKSVIESSKSSEE 230 (244)
T ss_dssp HTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTTEEEECHHHHHHHHHTC-----------
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCccEEEECHHHHHHHHHHhcccccHHHHHH
Confidence 357999999999999999999999999999999775 444555544220 012345556654444
No 356
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=28.02 E-value=44 Score=26.40 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhh-hceeeHHHHHHHhCCCHH
Q psy4458 199 LKHRVVEHNIRVMAKY-YTRITLQRMCDLLGLPIE 232 (303)
Q Consensus 199 l~~~i~ehNi~~isk~-Y~~Itl~~la~ll~ls~~ 232 (303)
-+.+|++-=+..+.+. |..+|++.||+..|+|..
T Consensus 8 ~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvs~g 42 (197)
T 2gen_A 8 RKDEILQAALACFSEHGVDATTIEMIRDRSGASIG 42 (197)
T ss_dssp CHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChH
Confidence 3455666555666544 999999999999999944
No 357
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=28.01 E-value=66 Score=30.91 Aligned_cols=47 Identities=9% Similarity=0.083 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Q psy4458 76 KYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNVVL 123 (303)
Q Consensus 76 ~y~~~~~~~~~~~~~f~eaa~~y~e~~~t~~~~~~~~~~~~~L~~~v~ 123 (303)
.+..+.-+||...++|.+||+-.+.+-.+ ...-+-.++++.|..++-
T Consensus 218 ~~~dLLWryy~k~~~~~~AA~VL~~LA~s-~~~i~L~~RIeyLsrA~~ 264 (525)
T 3i5p_A 218 KISNILWVYYSRRSKFFESAEILYRLATS-NFDITLFERIEFLSRANG 264 (525)
T ss_dssp CHHHHHHTHHHHCCSHHHHHHHHHHHHSS-SSCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcccHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH
Confidence 45677889999999999999999999866 222245678999999885
No 358
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=27.52 E-value=52 Score=27.24 Aligned_cols=65 Identities=11% Similarity=0.119 Sum_probs=35.9
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEeccCCC-------hhHHHHHHHHHHHHHHHHH
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKD-------PGEILNEWSASLNELMKLV 284 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~~~~-------~~~~l~~w~~~i~~l~~~v 284 (303)
-.+|-+.||..+|+|++-+-+.+.+|..+|-|.- ..|-|...++.. ...-+..|+..++.|=+.+
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~~~L~~~a~~~~~~~~~~~~~~~~l~~~~ 247 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRENILDK----KKNKIIVYNLGELKHLSEQTSYYSDPNSSSVDKLAAAL 247 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----CSSEEEESCHHHHHHHHTSSCCCC--------------
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEe----CCCEEEEecHHHHHHHHccCcccccCCchhHHHHHHhh
Confidence 3578999999999999999999999999998743 234444433211 0112455666665554443
No 359
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=27.34 E-value=83 Score=31.67 Aligned_cols=57 Identities=14% Similarity=0.038 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4458 32 VTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKH 97 (303)
Q Consensus 32 ~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~ 97 (303)
-++...|++.++..+||.-|-.+.+++-.....+-. .|.. .+..|...+||..|=..
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~--tW~~-------La~vYi~l~d~e~ALLt 393 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFE--SWYN-------LARCHIKKEEYEKALFA 393 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH--HHHH-------HHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhH--HHHH-------HHHHHHHhccHHHHHHH
Confidence 457888999999999999999999999877766655 6644 77778888888876543
No 360
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=27.27 E-value=54 Score=27.50 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=29.8
Q ss_pred eeeHHHHHHHhCCCHHHHHHHHHhhhhcCceE
Q psy4458 217 RITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 248 (303)
Q Consensus 217 ~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~ 248 (303)
.+|-+.||..+|+|++-+-+.+.+|-.+|-|.
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 248 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 248 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 57889999999999999999999999999875
No 361
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=27.26 E-value=61 Score=24.19 Aligned_cols=34 Identities=15% Similarity=0.023 Sum_probs=30.7
Q ss_pred eeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEE
Q psy4458 217 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 250 (303)
Q Consensus 217 ~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~ak 250 (303)
-.+...++..+|+++..+...+..++..|.+...
T Consensus 20 p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i 53 (121)
T 2pjp_A 20 PWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAI 53 (121)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence 4588899999999999999999999999998763
No 362
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=26.73 E-value=60 Score=27.48 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=24.8
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhh
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMV 242 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI 242 (303)
=.-++.++||..+|+|++++...|.+|=
T Consensus 34 Grpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 34 GRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 4557888999999999999999999884
No 363
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=26.62 E-value=1.1e+02 Score=21.46 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=21.0
Q ss_pred eeeHHHHHHHhCCCHHHHHHHHHhh
Q psy4458 217 RITLQRMCDLLGLPIEETEEFLSSM 241 (303)
Q Consensus 217 ~Itl~~la~ll~ls~~~vE~~l~~m 241 (303)
.++++.||+.+|+|+..+.....+.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 7999999999999998877766543
No 364
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=26.37 E-value=1.7e+02 Score=20.56 Aligned_cols=36 Identities=14% Similarity=0.285 Sum_probs=31.7
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEec
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKID 252 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akID 252 (303)
...++..||+.+|+|..-+-..+..+-.. -+..+-+
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~ 75 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQ 75 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEe
Confidence 56899999999999999999999999998 7776544
No 365
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=26.25 E-value=1.4e+02 Score=24.58 Aligned_cols=40 Identities=10% Similarity=0.028 Sum_probs=35.2
Q ss_pred CCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccC
Q psy4458 25 SMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFD 64 (303)
Q Consensus 25 ~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~ 64 (303)
..+..+.+.|.--..|+++..+||..|...+..+-..+..
T Consensus 7 ~~~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 7 DYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 4678899999999999999999999999999999888854
No 366
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=26.20 E-value=2.3e+02 Score=27.38 Aligned_cols=49 Identities=8% Similarity=0.041 Sum_probs=35.9
Q ss_pred HHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy4458 39 MRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAI 101 (303)
Q Consensus 39 ~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~ 101 (303)
..+.+..+++..|..+.+.+. ... .| ..++.++...++|..|.++|..+
T Consensus 659 f~~~l~~~~~~~A~~~~~~~~-----~~~--~W-------~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTDES-----AEM--KW-------RALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTTCC-----CHH--HH-------HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eehhhhcCCHHHHHHHHHhhC-----cHh--HH-------HHHHHHHHHcCCHHHHHHHHHHc
Confidence 445677888888877654332 111 34 44889999999999999999998
No 367
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=26.20 E-value=2.1e+02 Score=23.85 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=36.1
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEe
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINF 260 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f 260 (303)
..+|...+++.+|+|+.-+...|-.|+.+|.+.-= |++.| +.|
T Consensus 167 g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D-~~~eg-~~y 209 (218)
T 3cuq_B 167 GSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRD-DSVEG-LRF 209 (218)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-ESSSC-EEE
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEE-CCCCc-eEE
Confidence 56999999999999999999999999999987542 47777 444
No 368
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=26.13 E-value=1e+02 Score=22.68 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=32.5
Q ss_pred eeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEec
Q psy4458 217 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKID 252 (303)
Q Consensus 217 ~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akID 252 (303)
..++..||+.+|+|..-+-..+..+...|-+...-+
T Consensus 34 ~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 69 (118)
T 2jsc_A 34 VCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYE 69 (118)
T ss_dssp CCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEEC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEE
Confidence 478899999999999999999999999999977644
No 369
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=26.08 E-value=1.6e+02 Score=20.22 Aligned_cols=53 Identities=4% Similarity=-0.217 Sum_probs=39.5
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhc
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 62 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~ 62 (303)
..|++++|...+...---. . .-.+.+...+.++...|++..|.....++-...
T Consensus 31 ~~g~~~~A~~~~~~al~~~-p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 31 EHEQFDAALPHLRAALDFD-P-----TYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HTTCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHC-C-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4689999998887653111 1 114467788999999999999999999887655
No 370
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=25.85 E-value=1.1e+02 Score=21.75 Aligned_cols=25 Identities=4% Similarity=0.159 Sum_probs=21.1
Q ss_pred ceeeHHHHHHHhCCCHHHHHHHHHh
Q psy4458 216 TRITLQRMCDLLGLPIEETEEFLSS 240 (303)
Q Consensus 216 ~~Itl~~la~ll~ls~~~vE~~l~~ 240 (303)
..++++.||+.+|+|+..+.....+
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 5899999999999999887766554
No 371
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=25.77 E-value=99 Score=21.80 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=25.8
Q ss_pred hhceeeHHHHHHHhCCCHHHHHHHHHhhhh
Q psy4458 214 YYTRITLQRMCDLLGLPIEETEEFLSSMVV 243 (303)
Q Consensus 214 ~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~ 243 (303)
++.-.|...||+.+|+|+.-|...+.+...
T Consensus 39 ~~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 39 LSEGLTNKQIADRMFLAEKTVKNYVSRLLA 68 (95)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 378889999999999999999988877654
No 372
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=25.13 E-value=2.7e+02 Score=22.45 Aligned_cols=62 Identities=11% Similarity=-0.028 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHcC
Q psy4458 32 VTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQH----EGSYLATCKHYRAILTT 104 (303)
Q Consensus 32 ~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~----~~~f~eaa~~y~e~~~t 104 (303)
.+.+...+.+++..+|+..|..+.+++.. . + +.+ -+..++..+.. .++|.+|...|..+...
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~-~--~~~----a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 71 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD----L-K--ENS----GCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 71 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----T-T--CHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH----C-C--CHH----HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC
Confidence 34567888999999999999999998875 1 2 221 23347788888 99999999999998754
No 373
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=25.10 E-value=1.5e+02 Score=19.57 Aligned_cols=53 Identities=9% Similarity=-0.028 Sum_probs=39.8
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHH-HHHHHHHHHHhhcchhHHHHHHHHhhhhc
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVT-LILEQMRLCLAKKDYIRTQIISKKINTKF 62 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~-~~L~~~rL~L~~~D~~~a~~~~~ki~~~~ 62 (303)
..|++++|...+...--.... -.. .++..+.++...|++..|.....++-...
T Consensus 12 ~~~~~~~A~~~~~~al~~~p~------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 12 NQGDIENALQALEEFLQTEPV------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHTCHHHHHHHHHHHHHHCSS------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 468999999988775321111 123 67888999999999999999999988665
No 374
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=25.08 E-value=4.2e+02 Score=24.64 Aligned_cols=140 Identities=11% Similarity=0.112 Sum_probs=84.6
Q ss_pred cCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHH
Q psy4458 5 EGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIEL 84 (303)
Q Consensus 5 ~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~ 84 (303)
.|++++|.+++.++...... +. .-.+-..++.|...|++..|..+.++....-.. .+ ..-|..++..
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~--Pd---~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~-Pd-------~~tyn~lI~~ 149 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVV--PN---EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ-PR-------LRSYGPALFG 149 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCC--CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-CC-------HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCC--CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Cc-------cceehHHHHH
Confidence 46688899998887644221 11 123556788899999999999999887654221 11 3346667778
Q ss_pred HHHhhhHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHhCCCCchhhHhHHHhhhhhhcCCchHHHHHHHHhcC
Q psy4458 85 DQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTN 162 (303)
Q Consensus 85 ~~~~~~f~eaa~~y~e~~~t~~~~~~~~~~~~~L~~~v~~~iLs~~~~~r~~ll~~l~~~~~~~~~p~~~~L~~~f~~ 162 (303)
+...++..+|.+.|.+....--. .|. .++..++-+..=+....+--+++.++...-..+....+..|...|.+
T Consensus 150 ~~~~g~~~~A~~l~~~M~~~G~~-Pd~----~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 150 FCRKGDADKAYEVDAHMVESEVV-PEE----PELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCC-CCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHCCCHHHHHHHHHHHHhcCCC-CCH----HHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 88899999999999998754221 121 12222222222122222344456665544344555567777777743
No 375
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=25.07 E-value=1.8e+02 Score=22.95 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=41.3
Q ss_pred CCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhc
Q psy4458 6 GDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 62 (303)
Q Consensus 6 ~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~ 62 (303)
+++.+|..+|.++--.+ ++..+-|++...+--+...+||.+|..+++++-..-
T Consensus 49 ~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 49 DDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 46778888888875332 244677888888888899999999999999887654
No 376
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=24.80 E-value=87 Score=21.78 Aligned_cols=30 Identities=10% Similarity=0.148 Sum_probs=25.7
Q ss_pred hhceeeHHHHHHHhCCCHHHHHHHHHhhhh
Q psy4458 214 YYTRITLQRMCDLLGLPIEETEEFLSSMVV 243 (303)
Q Consensus 214 ~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~ 243 (303)
++.-.|...||+.+|+|+.-|...+.+...
T Consensus 41 ~~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 41 IAKGYSNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp HHTTCCTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467889999999999999999988877653
No 377
>2kvv_A Putative excisionase; DNA binding, WHTH motif, structural genomics, N structural genomics consortium (NESG), PSI-2; NMR {Klebsiella pneumoniae}
Probab=24.66 E-value=1.7e+02 Score=20.50 Aligned_cols=55 Identities=9% Similarity=0.142 Sum_probs=43.8
Q ss_pred eeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCC-----ceEEeccCCChhHHHHHHHHH
Q psy4458 217 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPA-----GIINFARNKDPGEILNEWSAS 276 (303)
Q Consensus 217 ~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~-----giV~f~~~~~~~~~l~~w~~~ 276 (303)
=|+-+.|+..+|+++..+.+.-...=.+|+=+-+++... +.+.++. +.++.|.++
T Consensus 10 WV~e~~l~a~tGLs~~tIkryR~~~WlEGrhyrrvspdG~p~~~S~~~YN~-----~~I~~Wie~ 69 (78)
T 2kvv_A 10 WMVEKALMVRTGLGARQIESYRQGAWIEGVHFKRVSPSGEKTLRGTTWYNY-----PEINKFIRD 69 (78)
T ss_dssp EECHHHHHHHHCCCHHHHHHHHTTTCCBTTTEEEECSSSSCCTTCEEEEEH-----HHHHHHHHH
T ss_pred hhCHHHHHHHHCCCHHHHHHHHhchhhheeeeEeeCCCCCCCcCceEEEcH-----HHHHHHHHH
Confidence 367788999999999999999999999999999988655 3444442 578888864
No 378
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=24.26 E-value=52 Score=25.97 Aligned_cols=27 Identities=11% Similarity=0.321 Sum_probs=22.2
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhh
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSM 241 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~m 241 (303)
++-=|++.||+.+|++++.+...|.+.
T Consensus 93 ~kadTleeLA~~~gid~~~L~~TV~~y 119 (160)
T 2lfc_A 93 FVKGSLESAAEQAGIVVDELVQTVKNY 119 (160)
T ss_dssp EECSSHHHHHHHHTCCHHHHHHHHHHH
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 344589999999999999988888654
No 379
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=23.89 E-value=62 Score=21.49 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=16.7
Q ss_pred eeHHHHHHHhCCCHHHHHHHH
Q psy4458 218 ITLQRMCDLLGLPIEETEEFL 238 (303)
Q Consensus 218 Itl~~la~ll~ls~~~vE~~l 238 (303)
+|+..||+..|+|+.-|-..+
T Consensus 1 ~T~~diA~~aGVS~sTVSrvL 21 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVI 21 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHH
Confidence 578999999999987655544
No 380
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=23.82 E-value=1.2e+02 Score=28.05 Aligned_cols=60 Identities=12% Similarity=-0.074 Sum_probs=46.2
Q ss_pred HHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy4458 36 LEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 104 (303)
Q Consensus 36 L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~t 104 (303)
..++..++..++|..|....+++-.... . + ...+...+..+...++|.+|-..|..++..
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p--~---~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 69 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNP--S---N----AIYYGNRSLAYLRTECYGYALGDATRAIEL 69 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCT--T---C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCC--c---c----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3445667788999999999998876542 1 1 334556788889999999999999999865
No 381
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=23.76 E-value=1.4e+02 Score=22.15 Aligned_cols=36 Identities=6% Similarity=-0.057 Sum_probs=33.3
Q ss_pred hceeeHHHHHHHh--CCCHHHHHHHHHhhhhcCceEEE
Q psy4458 215 YTRITLQRMCDLL--GLPIEETEEFLSSMVVSKTITAK 250 (303)
Q Consensus 215 Y~~Itl~~la~ll--~ls~~~vE~~l~~mI~~~~l~ak 250 (303)
.-.+|...||..+ |+|...|-+.+..+...|-|...
T Consensus 25 ~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~ 62 (111)
T 3b73_A 25 EGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL 62 (111)
T ss_dssp HSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC
T ss_pred cCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec
Confidence 4589999999999 99999999999999999999874
No 382
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=23.62 E-value=77 Score=24.30 Aligned_cols=33 Identities=3% Similarity=0.168 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHH-hhhceeeHHHHHHHhCCCHH
Q psy4458 200 KHRVVEHNIRVMA-KYYTRITLQRMCDLLGLPIE 232 (303)
Q Consensus 200 ~~~i~ehNi~~is-k~Y~~Itl~~la~ll~ls~~ 232 (303)
+.+|++-=+..+. +-|..+|++.||+..|+|..
T Consensus 12 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~ 45 (196)
T 3col_A 12 QVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQS 45 (196)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHH
Confidence 3445554445554 56999999999999999954
No 383
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=23.55 E-value=1.2e+02 Score=20.66 Aligned_cols=29 Identities=7% Similarity=0.091 Sum_probs=25.1
Q ss_pred hhceeeHHHHHHHhCCCHHHHHHHHHhhh
Q psy4458 214 YYTRITLQRMCDLLGLPIEETEEFLSSMV 242 (303)
Q Consensus 214 ~Y~~Itl~~la~ll~ls~~~vE~~l~~mI 242 (303)
++.-.|.+.||+.+|+|+.-|...+.+..
T Consensus 33 ~~~g~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 33 IAQGLPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46788999999999999999998887654
No 384
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=23.46 E-value=61 Score=26.63 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=34.3
Q ss_pred eeeHHHHHHHhCCCH-HHHHHHHHhhhhcCceEEEecCCCceEEecc
Q psy4458 217 RITLQRMCDLLGLPI-EETEEFLSSMVVSKTITAKIDRPAGIINFAR 262 (303)
Q Consensus 217 ~Itl~~la~ll~ls~-~~vE~~l~~mI~~~~l~akIDq~~giV~f~~ 262 (303)
.+|-+.||+.+|+|+ +-+-+.+.+|-.+|-|.-. .|.|...+
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~----~~~i~I~d 211 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYK----NSCFYVQN 211 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEE----TTEEEESC
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEec----CCEEEEeC
Confidence 578899999999999 8999999999999987432 45565554
No 385
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=23.44 E-value=81 Score=24.13 Aligned_cols=33 Identities=6% Similarity=0.238 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHH-hhhceeeHHHHHHHhCCCHH
Q psy4458 200 KHRVVEHNIRVMA-KYYTRITLQRMCDLLGLPIE 232 (303)
Q Consensus 200 ~~~i~ehNi~~is-k~Y~~Itl~~la~ll~ls~~ 232 (303)
+.+|++-=+..+. +-|..+|++.||+..|+|..
T Consensus 10 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~ 43 (194)
T 2g7s_A 10 ADDILQCARTLIIRGGYNSFSYADISQVVGIRNA 43 (194)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCch
Confidence 3445554445554 45999999999999999954
No 386
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=23.23 E-value=47 Score=30.42 Aligned_cols=31 Identities=23% Similarity=0.190 Sum_probs=28.1
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcC
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSK 245 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~ 245 (303)
...+|++.|++.+|++.+++...|..++..+
T Consensus 213 ~~~lt~~ei~~~t~i~~~~L~r~L~sL~~~~ 243 (382)
T 3dpl_C 213 REKISFENLKLATELPDAELRRTLWSLVAFP 243 (382)
T ss_dssp TCCEEHHHHHHHHCCCHHHHHHHHHHHHCCT
T ss_pred CCcCcHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence 4689999999999999999999999998754
No 387
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=23.15 E-value=1.7e+02 Score=23.45 Aligned_cols=34 Identities=9% Similarity=0.043 Sum_probs=30.8
Q ss_pred eeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEE
Q psy4458 217 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 250 (303)
Q Consensus 217 ~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~ak 250 (303)
..|+..||+.+|++..-+-..|..|-..|.|...
T Consensus 24 ~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 24 PPSVREIARRFRITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred CCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEec
Confidence 4899999999999999999999999999988654
No 388
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=23.10 E-value=82 Score=24.07 Aligned_cols=32 Identities=6% Similarity=0.262 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHH-hhhceeeHHHHHHHhCCCHH
Q psy4458 201 HRVVEHNIRVMA-KYYTRITLQRMCDLLGLPIE 232 (303)
Q Consensus 201 ~~i~ehNi~~is-k~Y~~Itl~~la~ll~ls~~ 232 (303)
.+|++-=+..+. +-|..+|++.||+..|+|..
T Consensus 13 ~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~ 45 (191)
T 3on4_A 13 ERILAVAEALIQKDGYNAFSFKDIATAINIKTA 45 (191)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcc
Confidence 345554445554 45999999999999999954
No 389
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=23.06 E-value=77 Score=28.76 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHH-HhhhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEE
Q psy4458 197 KMLKHRVVEHNIRVM-AKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 250 (303)
Q Consensus 197 ~~l~~~i~ehNi~~i-sk~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~ak 250 (303)
..++..+.++...-. -++|...+...+|+++|+|+..++..+.+|-..|...++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~ 76 (403)
T 3ez9_A 22 KAMSQDIEDQRKEFNQTEYYQTFTRNAVAKLPKLSRRIVDQAIKEMEEDGYQFNK 76 (403)
T ss_dssp GGGHHHHHHHHHHHTTTCCCCCBCHHHHHHSTTCCHHHHHHHHHHHHHTSCCCCE
T ss_pred HHHHHHHhccccCcCccccCCCcCHHHHHHHhCCCHHHHHHHHHHHhhcCCCCCc
Confidence 445566666665554 378999999999999999999999999988777776655
No 390
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=23.02 E-value=1.5e+02 Score=19.55 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=32.5
Q ss_pred hhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEE
Q psy4458 214 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 250 (303)
Q Consensus 214 ~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~ak 250 (303)
.=.-+|-..+|..||+|.+.+-..+-++.++|.+.-+
T Consensus 15 ~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRKR 51 (68)
T 3i71_A 15 VRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKR 51 (68)
T ss_dssp CTTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhhh
Confidence 4566788999999999999999999999999998643
No 391
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=22.97 E-value=1.3e+02 Score=26.85 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhh----ceeeHHHHHHHhCCC-HHHHHHHH
Q psy4458 201 HRVVEHNIRVMAKYY----TRITLQRMCDLLGLP-IEETEEFL 238 (303)
Q Consensus 201 ~~i~ehNi~~isk~Y----~~Itl~~la~ll~ls-~~~vE~~l 238 (303)
.+++..-++.+++.| ..++++.|++.|+.+ ++++...+
T Consensus 204 ~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~ 246 (316)
T 3t5v_A 204 TDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFC 246 (316)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHH
Confidence 456666677788888 489999999999994 77766665
No 392
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=22.93 E-value=1.8e+02 Score=22.06 Aligned_cols=42 Identities=10% Similarity=0.087 Sum_probs=28.6
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
...+|...||+.+|+++.-+=..|..|...|-+. +.|..++-
T Consensus 50 ~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr-~~~~~DrR 91 (148)
T 4fx0_A 50 GIDLTMSELAARIGVERTTLTRNLEVMRRDGLVR-VMAGADAR 91 (148)
T ss_dssp ----CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC---------
T ss_pred CCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE-eeCCCCCC
Confidence 3469999999999999999999999999999883 45555554
No 393
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=22.80 E-value=82 Score=24.26 Aligned_cols=32 Identities=16% Similarity=0.391 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHH-hhhceeeHHHHHHHhCCCHH
Q psy4458 201 HRVVEHNIRVMA-KYYTRITLQRMCDLLGLPIE 232 (303)
Q Consensus 201 ~~i~ehNi~~is-k~Y~~Itl~~la~ll~ls~~ 232 (303)
.+|++-=...+. +-|..+|++.||+..|+|..
T Consensus 6 ~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~ 38 (189)
T 3geu_A 6 DKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKA 38 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHH
Confidence 344444444444 56999999999999999954
No 394
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=22.64 E-value=1.9e+02 Score=23.09 Aligned_cols=33 Identities=9% Similarity=0.059 Sum_probs=29.6
Q ss_pred eeeHHHHHHHhCCCHHHHHHHHHhhhhcCc-eEE
Q psy4458 217 RITLQRMCDLLGLPIEETEEFLSSMVVSKT-ITA 249 (303)
Q Consensus 217 ~Itl~~la~ll~ls~~~vE~~l~~mI~~~~-l~a 249 (303)
.+|.+.||+.||+|..-+-+-|..|-..|. |.+
T Consensus 36 ~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 36 PVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 499999999999999999999999988887 653
No 395
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=22.36 E-value=91 Score=24.96 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhhceeeHHHHHHHhC--CCHHHHHHHHHhhhhc----CceEEEecCCCceEEeccC
Q psy4458 202 RVVEHNIRVMAKYYTRITLQRMCDLLG--LPIEETEEFLSSMVVS----KTITAKIDRPAGIINFARN 263 (303)
Q Consensus 202 ~i~ehNi~~isk~Y~~Itl~~la~ll~--ls~~~vE~~l~~mI~~----~~l~akIDq~~giV~f~~~ 263 (303)
+++|--+-+..+| +|++.||+.++ +++++++..+.++..+ ++ .=.|=+++|--.|...
T Consensus 10 ~~iEAlLf~~~~p---vs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~r-g~~l~~v~~gy~l~t~ 73 (162)
T 1t6s_A 10 RSLEALIFSSEEP---VNLQTLSQITAHKFTPSELQEAVDELNRDYEATGR-TFRIHAIAGGYRFLTE 73 (162)
T ss_dssp HHHHHHHHHCSSC---BCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTC-SEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHcCCC---CCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCC-CEEEEEECCEEEEEEc
Confidence 4566444333333 99999999999 9999999999888753 21 1145555666555543
No 396
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=22.00 E-value=99 Score=23.38 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHH-hhhceeeHHHHHHHhCCCHH
Q psy4458 197 KMLKHRVVEHNIRVMA-KYYTRITLQRMCDLLGLPIE 232 (303)
Q Consensus 197 ~~l~~~i~ehNi~~is-k~Y~~Itl~~la~ll~ls~~ 232 (303)
..-+.+|++-=+..+. +.|..+|++.||+..|+|..
T Consensus 11 ~~tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~ 47 (177)
T 3kkc_A 11 QKTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRS 47 (177)
T ss_dssp HHHHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHh
Confidence 3344555555455554 56999999999999999944
No 397
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=21.94 E-value=88 Score=29.06 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy4458 70 VQELKLKYYRLMIELDQHEGSYLATCKHYR 99 (303)
Q Consensus 70 ~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~ 99 (303)
..+++++|-.-++..+...++|.||+.++.
T Consensus 6 ~pdl~~~wl~~La~~h~~~~n~~EAa~cl~ 35 (428)
T 2wm9_A 6 TPELRKTWLDSMARIHVKNGDLSEAAMCYV 35 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 578999999999999999999999999987
No 398
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=21.85 E-value=1.5e+02 Score=23.05 Aligned_cols=38 Identities=11% Similarity=0.126 Sum_probs=34.4
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEec
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKID 252 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akID 252 (303)
-...+...||+.+|+|..-+-..|..|...|-|...-|
T Consensus 69 ~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~ 106 (151)
T 3f6v_A 69 SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKD 106 (151)
T ss_dssp GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 35689999999999999999999999999999988654
No 399
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=21.67 E-value=85 Score=26.51 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhhhceeeHHHHHHHhCCCHHHHHHHHHhhhhc----CceEEEecCCCceEEeccC
Q psy4458 201 HRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVS----KTITAKIDRPAGIINFARN 263 (303)
Q Consensus 201 ~~i~ehNi~~isk~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~----~~l~akIDq~~giV~f~~~ 263 (303)
++++|--+-+..+| ++++.||+.++++.++++..|..+..+ ++ .-.|=+++|--.|...
T Consensus 17 ~~~iEAlLf~a~ep---vs~~~La~~l~~~~~~v~~~l~~L~~~y~~~~r-Giel~~v~~gy~l~T~ 79 (219)
T 2z99_A 17 KRVLEALLLVIDTP---VTADALAAATEQPVYRVAAKLQLMADELTGRDS-GIDLRHTSEGWRMYTR 79 (219)
T ss_dssp HHHHHHHHHHCSSC---BCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTC-SEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHcCCC---CCHHHHHHHHCcCHHHHHHHHHHHHHHHhhCCC-CEEEEEECCEEEEEEc
Confidence 35666555444455 999999999999999999999888752 22 1245555666555543
No 400
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=21.64 E-value=4.1e+02 Score=24.34 Aligned_cols=66 Identities=14% Similarity=-0.003 Sum_probs=44.5
Q ss_pred HHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy4458 37 EQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 37 ~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~~~~~~~~f~eaa~~y~e~~~ 103 (303)
+.++-.-..|+|..|..+..++-......-|++.... ..-+.-.+..|...++|.+|..+|..++.
T Consensus 303 e~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~-a~~~~nLa~~y~~~g~~~eA~~~~~~aL~ 368 (433)
T 3qww_A 303 EEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYM-LHMMYQAMGVCLYMQDWEGALKYGQKIIK 368 (433)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHH-HHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 3344444567899999988888655433333323433 45555677778899999999999988853
No 401
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function; NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Probab=21.59 E-value=28 Score=26.45 Aligned_cols=22 Identities=23% Similarity=0.524 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhhhcCceEEEec
Q psy4458 231 IEETEEFLSSMVVSKTITAKID 252 (303)
Q Consensus 231 ~~~vE~~l~~mI~~~~l~akID 252 (303)
...||..|..|...|+|.++||
T Consensus 69 A~~VE~~li~laq~Gql~~ki~ 90 (116)
T 2hvu_A 69 AQAVETYLKKLIATNNVTHKIT 90 (116)
T ss_dssp HHHHHHHHHHHHHHSCCSSCBC
T ss_pred HHHHHHHHHHHHHcCCCCCCcC
Confidence 4689999999999999998875
No 402
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=21.50 E-value=1e+02 Score=23.84 Aligned_cols=35 Identities=9% Similarity=0.223 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHH-hhhceeeHHHHHHHhCCCHH
Q psy4458 198 MLKHRVVEHNIRVMA-KYYTRITLQRMCDLLGLPIE 232 (303)
Q Consensus 198 ~l~~~i~ehNi~~is-k~Y~~Itl~~la~ll~ls~~ 232 (303)
.-+.+|++-=+..+. +-|..+|++.||+..|+|..
T Consensus 12 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~ 47 (202)
T 3lwj_A 12 ERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTG 47 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCch
Confidence 344556665555555 45999999999999999944
No 403
>1wmg_A Netrin receptor UNC5H2; six helix bundle, death domain, apoptosis, structural genomi NPPSFA; 2.10A {Mus musculus} SCOP: a.77.1.2
Probab=21.46 E-value=1.3e+02 Score=21.98 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=30.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEeccCCChhHHHHHHHHH------HHHHHHHHHHHH
Q psy4458 220 LQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSAS------LNELMKLVNNTT 288 (303)
Q Consensus 220 l~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~w~~~------i~~l~~~v~~~~ 288 (303)
-..||+.+|++. ++..+-. .+.+....|+.|..+ |..|++.+..++
T Consensus 34 Wr~LA~~Lg~~~-~i~~~~~----------------------~~SPt~~LL~~W~~~~~~~~tv~~L~~~L~~mg 85 (103)
T 1wmg_A 34 WRLLAQKLSMDR-YLNYFAT----------------------KASPTGVILDLWEARQQDDGDLNSLASALEEMG 85 (103)
T ss_dssp HHHHHHHTTCGG-GHHHHHT----------------------SSCHHHHHHHHHHHHCCSTTTHHHHHHHHHHTT
T ss_pred HHHHHHHcCChH-HHHHHHc----------------------CCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHcC
Confidence 346777888877 6665421 134556789999876 778877776544
No 404
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=21.43 E-value=1e+02 Score=23.36 Aligned_cols=34 Identities=12% Similarity=0.258 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHH-hhhceeeHHHHHHHhCCCHH
Q psy4458 199 LKHRVVEHNIRVMA-KYYTRITLQRMCDLLGLPIE 232 (303)
Q Consensus 199 l~~~i~ehNi~~is-k~Y~~Itl~~la~ll~ls~~ 232 (303)
-+.+|++-=+..+. +-|..+|++.||+..|+|..
T Consensus 9 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~ 43 (188)
T 3qkx_A 9 LAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAG 43 (188)
T ss_dssp HHHHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcc
Confidence 34445554445554 55999999999999999955
No 405
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=21.33 E-value=1.9e+02 Score=28.04 Aligned_cols=84 Identities=17% Similarity=0.146 Sum_probs=59.2
Q ss_pred ccCCHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHhhcchhHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q psy4458 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 83 (303)
Q Consensus 4 ~~~~~~~Aa~~L~~i~vet~~~~~~~~k~~~~L~~~rL~L~~~D~~~a~~~~~ki~~~~~~~~~~~~~e~k~~y~~~~~~ 83 (303)
..|++++|...+...--... .-.+.+...+.+++..|++..|....+++-....+. . ..+...+.
T Consensus 445 ~~g~~~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-----~----~~~~~lg~ 509 (681)
T 2pzi_A 445 DLGDVAKATRKLDDLAERVG------WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE-----L----APKLALAA 509 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-----S----HHHHHHHH
T ss_pred hcCCHHHHHHHHHHHhccCc------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----h----HHHHHHHH
Confidence 45889999888876532111 114567888999999999999999999987655322 1 12335677
Q ss_pred HHHHhhhHHHHHHHHHHHHc
Q psy4458 84 LDQHEGSYLATCKHYRAILT 103 (303)
Q Consensus 84 ~~~~~~~f~eaa~~y~e~~~ 103 (303)
.+...++|-+ -..|..++.
T Consensus 510 ~~~~~g~~~~-~~~~~~al~ 528 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWS 528 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHH
T ss_pred HHHHcCChHH-HHHHHHHHH
Confidence 7778888888 777777764
No 406
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=21.29 E-value=1.6e+02 Score=20.79 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=21.4
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHh
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSS 240 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~ 240 (303)
-..++++.||+.+|+|+..+.....+
T Consensus 16 ~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 46799999999999998887766554
No 407
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=21.26 E-value=2.2e+02 Score=22.28 Aligned_cols=47 Identities=9% Similarity=0.094 Sum_probs=39.6
Q ss_pred h-ceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEecCCCceEEecc
Q psy4458 215 Y-TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 262 (303)
Q Consensus 215 Y-~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akIDq~~giV~f~~ 262 (303)
| +-||.+.|++.|+|+..-+-..|-++...|.|.-..-.. +..+|.+
T Consensus 60 ~gKlITpsvlseRlkI~gSLARkaLreL~~kGlIk~V~kh~-~q~IYTr 107 (143)
T 2xzm_8 60 VGKVLTVSTVVEKLKVNGSLARQLMRTMADRKLVEKVAKNG-NQWVYSV 107 (143)
T ss_dssp SCSEECHHHHHHHHCBCHHHHHHHHHHHHHTTSEEEEEEET-TEEEEEE
T ss_pred cceeecHHHHHHHhcchHHHHHHHHHHHHHCCCEEEEecCC-CeEEEec
Confidence 8 999999999999999999999999999999998775444 4444443
No 408
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=20.92 E-value=1.2e+02 Score=23.51 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHH-hhhceeeHHHHHHHhCCCHH
Q psy4458 199 LKHRVVEHNIRVMA-KYYTRITLQRMCDLLGLPIE 232 (303)
Q Consensus 199 l~~~i~ehNi~~is-k~Y~~Itl~~la~ll~ls~~ 232 (303)
-+.+|++-=+..+. +-|..+|++.||+..|+|..
T Consensus 18 ~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~ 52 (208)
T 3cwr_A 18 VRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKK 52 (208)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHH
Confidence 34455655555555 45999999999999999954
No 409
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=20.82 E-value=1.9e+02 Score=23.64 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=35.0
Q ss_pred hceeeHHHHHHHhCCCHHHHHHHHHhhhhcCceEEEec
Q psy4458 215 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKID 252 (303)
Q Consensus 215 Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l~akID 252 (303)
....+...||+.+|+|..-+=..|..|...|-+...-+
T Consensus 26 ~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~ 63 (202)
T 2p4w_A 26 KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVE 63 (202)
T ss_dssp HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEee
Confidence 35689999999999999999999999999999988776
No 410
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=20.78 E-value=85 Score=23.71 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHH-hhhceeeHHHHHHHhCCCHH
Q psy4458 201 HRVVEHNIRVMA-KYYTRITLQRMCDLLGLPIE 232 (303)
Q Consensus 201 ~~i~ehNi~~is-k~Y~~Itl~~la~ll~ls~~ 232 (303)
.+|++-=+..+. +-|..+|++.||+..|+|..
T Consensus 7 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~ 39 (170)
T 3egq_A 7 VRIIEAALRLYMKKPPHEVSIEEIAREAKVSKS 39 (170)
T ss_dssp HHHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHhcCCccCcHHHHHHHhCCCch
Confidence 344554444554 45999999999999999954
No 411
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=20.76 E-value=1.1e+02 Score=23.95 Aligned_cols=35 Identities=3% Similarity=0.140 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHH-hhhceeeHHHHHHHhCCCHH
Q psy4458 198 MLKHRVVEHNIRVMA-KYYTRITLQRMCDLLGLPIE 232 (303)
Q Consensus 198 ~l~~~i~ehNi~~is-k~Y~~Itl~~la~ll~ls~~ 232 (303)
..+.+|++-=...+. +-|..+|+..||+..|+|..
T Consensus 12 ~tr~~Il~aA~~l~~e~G~~~~s~~~IA~~agvs~~ 47 (198)
T 3cjd_A 12 ALREKLIDLAEAQIEAEGLASLRARELARQADCAVG 47 (198)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHhCChhhcCHHHHHHHhCCCcc
Confidence 455566665555555 45999999999999999954
No 412
>2jxn_A Uncharacterized protein YMR074C; YMR074CP, PDCD5-like protein, phosphoprotein, unknown functi; HET: MTN; NMR {Saccharomyces cerevisiae}
Probab=20.69 E-value=32 Score=26.61 Aligned_cols=22 Identities=23% Similarity=0.524 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhhcCceEEEec
Q psy4458 231 IEETEEFLSSMVVSKTITAKID 252 (303)
Q Consensus 231 ~~~vE~~l~~mI~~~~l~akID 252 (303)
...||..|..|...|+|.++|+
T Consensus 69 A~~VE~~Li~lAq~Gql~~kVs 90 (127)
T 2jxn_A 69 AQAVETYLKKLIATNNVTHKIT 90 (127)
T ss_dssp HHHHHHHHHHHHHHSCCCSCBC
T ss_pred HHHHHHHHHHHHHcCCCCCCcC
Confidence 4578999999999999998775
No 413
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=20.52 E-value=83 Score=24.05 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=20.9
Q ss_pred HHHHHHHHHH-hhhceeeHHHHHHHhCCC
Q psy4458 203 VVEHNIRVMA-KYYTRITLQRMCDLLGLP 230 (303)
Q Consensus 203 i~ehNi~~is-k~Y~~Itl~~la~ll~ls 230 (303)
|++-=+..+. +-|..+|++.||+..|+|
T Consensus 11 Il~aa~~l~~~~G~~~~t~~~Ia~~agvs 39 (191)
T 1sgm_A 11 ILHTASRLSQLQGYHATGLNQIVKESGAP 39 (191)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHCCC
T ss_pred HHHHHHHHHHHcCccccCHHHHHHHHCCC
Confidence 4443334443 569999999999999998
No 414
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=20.49 E-value=92 Score=23.83 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHh-hhceeeHHHHHHHhCCCHH
Q psy4458 202 RVVEHNIRVMAK-YYTRITLQRMCDLLGLPIE 232 (303)
Q Consensus 202 ~i~ehNi~~isk-~Y~~Itl~~la~ll~ls~~ 232 (303)
+|++-=+..+.+ =|..+|++.||+..|+|..
T Consensus 6 ~Il~aA~~lf~~~Gy~~~s~~~Ia~~agvskg 37 (179)
T 2eh3_A 6 RILEVSKELFFEKGYQGTSVEEIVKRANLSKG 37 (179)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCCcH
Confidence 444444444543 4999999999999999944
No 415
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=20.42 E-value=2.7e+02 Score=20.77 Aligned_cols=43 Identities=5% Similarity=-0.061 Sum_probs=38.4
Q ss_pred hceeeHHHHHHHh-CCCHHHHHHHHHhhhhcCceEEEecCCCce
Q psy4458 215 YTRITLQRMCDLL-GLPIEETEEFLSSMVVSKTITAKIDRPAGI 257 (303)
Q Consensus 215 Y~~Itl~~la~ll-~ls~~~vE~~l~~mI~~~~l~akIDq~~gi 257 (303)
....++..|++.+ |++..-+=..|..|...|-|.-+.|..++-
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r 89 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPP 89 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSC
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCC
Confidence 4679999999999 799999999999999999999888876554
No 416
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=20.41 E-value=91 Score=24.34 Aligned_cols=32 Identities=13% Similarity=0.310 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHH-hhhceeeHHHHHHHhCCCHH
Q psy4458 201 HRVVEHNIRVMA-KYYTRITLQRMCDLLGLPIE 232 (303)
Q Consensus 201 ~~i~ehNi~~is-k~Y~~Itl~~la~ll~ls~~ 232 (303)
.+|++-=+..+. +.|..+|++.||+..|+|..
T Consensus 15 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~ 47 (189)
T 3vp5_A 15 NRVYDACLNEFQTHSFHEAKIMHIVKALDIPRG 47 (189)
T ss_dssp HHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHCCcccccHHHHHHHhCCChH
Confidence 344444444444 56999999999999999944
No 417
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=20.37 E-value=21 Score=34.79 Aligned_cols=40 Identities=5% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHhhhceeeHHHHHHHhCCCHHHHHHHHHhhhhcCce
Q psy4458 208 IRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTI 247 (303)
Q Consensus 208 i~~isk~Y~~Itl~~la~ll~ls~~~vE~~l~~mI~~~~l 247 (303)
|..+.+-+..||-+.+++++|+|+.++-..|.+|+..|.|
T Consensus 521 I~~~l~~~g~it~~di~~l~~ls~~qa~~~L~~Lv~~G~l 560 (583)
T 3lmm_A 521 AMLWLSEVGDLATSDLMAMCGVSRGTAKACVDGLVDEERV 560 (583)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcE
No 418
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=20.34 E-value=1.4e+02 Score=23.35 Aligned_cols=35 Identities=6% Similarity=0.155 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHH-hhhceeeHHHHHHHhCCCHH
Q psy4458 198 MLKHRVVEHNIRVMA-KYYTRITLQRMCDLLGLPIE 232 (303)
Q Consensus 198 ~l~~~i~ehNi~~is-k~Y~~Itl~~la~ll~ls~~ 232 (303)
.-+.+|++-=+..+. +-|..+|++.||+..|+|..
T Consensus 9 ~~r~~Il~aA~~lf~~~G~~~~t~~~Ia~~Agvs~g 44 (204)
T 3anp_C 9 RRRERIFRAAMELFRNRGFQETTATEIAKAAHVSRG 44 (204)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCchH
Confidence 344556665556665 45999999999999999943
No 419
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=20.27 E-value=1e+02 Score=23.77 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHH-hhhceeeHHHHHHHhCCCHH
Q psy4458 201 HRVVEHNIRVMA-KYYTRITLQRMCDLLGLPIE 232 (303)
Q Consensus 201 ~~i~ehNi~~is-k~Y~~Itl~~la~ll~ls~~ 232 (303)
.+|++-=+..+. +-|..+|++.||+..|+|..
T Consensus 11 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~ 43 (206)
T 3dew_A 11 SRLMEVATELFAQKGFYGVSIRELAQAAGASIS 43 (206)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHH
Confidence 345554445554 45999999999999999954
No 420
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=20.12 E-value=34 Score=26.11 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhhcCceEEEec
Q psy4458 231 IEETEEFLSSMVVSKTITAKID 252 (303)
Q Consensus 231 ~~~vE~~l~~mI~~~~l~akID 252 (303)
...||..|..|...|+|.++||
T Consensus 66 A~~VE~~LI~lAq~Gqi~~kIt 87 (118)
T 2cru_A 66 TKAVENYLIQMARYGQLSEKVS 87 (118)
T ss_dssp HHHHHHHHHHHHHHTCCCSCBC
T ss_pred HHHHHHHHHHHHHcCCCCCCcC
Confidence 3578999999999999998886
Done!