Your job contains 1 sequence.
>psy4458
MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT
KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN
VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF
KTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSS
MVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIHQR
VAA
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4458
(303 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
RGD|1359305 - symbol:Psmd12 "proteasome (prosome, macropa... 991 7.1e-100 1
UNIPROTKB|O00232 - symbol:PSMD12 "26S proteasome non-ATPa... 990 9.1e-100 1
UNIPROTKB|Q5RBI3 - symbol:PSMD12 "26S proteasome non-ATPa... 990 9.1e-100 1
UNIPROTKB|F1NPQ0 - symbol:LOC100859465 "Uncharacterized p... 989 1.2e-99 1
MGI|MGI:1914247 - symbol:Psmd12 "proteasome (prosome, mac... 988 1.5e-99 1
UNIPROTKB|Q2KJ25 - symbol:PSMD12 "26S proteasome non-ATPa... 985 3.1e-99 1
UNIPROTKB|F1RSM2 - symbol:PSMD12 "Uncharacterized protein... 985 3.1e-99 1
ZFIN|ZDB-GENE-030131-617 - symbol:psmd12 "proteasome (pro... 964 5.2e-97 1
FB|FBgn0028690 - symbol:Rpn5 "Regulatory particle non-ATP... 436 3.7e-72 2
ASPGD|ASPL0000076235 - symbol:AN4775 species:162425 "Emer... 564 6.8e-71 2
DICTYBASE|DDB_G0281051 - symbol:psmD12 "26S proteasome no... 665 2.5e-65 1
POMBASE|SPAC1420.03 - symbol:rpn501 "19S proteasome regul... 662 5.2e-65 1
POMBASE|SPAPB8E5.02c - symbol:rpn502 "19S proteasome regu... 662 5.2e-65 1
TAIR|locus:2176100 - symbol:RPN5B "AT5G64760" species:370... 477 1.1e-64 2
WB|WBGene00004461 - symbol:rpn-5 species:6239 "Caenorhabd... 647 2.0e-63 1
SGD|S000002306 - symbol:RPN5 "Subunit of the CSN and 26S ... 589 2.8e-57 1
GENEDB_PFALCIPARUM|PF10_0174 - symbol:PF10_0174 "26s prot... 578 4.2e-56 1
UNIPROTKB|Q8IJM0 - symbol:PF10_0174 "26s proteasome subun... 578 4.2e-56 1
TAIR|locus:2178138 - symbol:EMB2107 "AT5G09900" species:3... 234 1.3e-38 2
UNIPROTKB|G5EHP6 - symbol:MGCH7_ch7g327 "26S proteasome r... 294 1.7e-25 1
FB|FBgn0027054 - symbol:CSN4 "COP9 complex homolog subuni... 179 2.3e-11 1
UNIPROTKB|Q3SZA0 - symbol:COPS4 "COP9 signalosome complex... 152 3.3e-08 1
UNIPROTKB|E2RT55 - symbol:COPS4 "Uncharacterized protein"... 152 3.3e-08 1
UNIPROTKB|Q9BT78 - symbol:COPS4 "COP9 signalosome complex... 152 3.3e-08 1
UNIPROTKB|A7Y521 - symbol:COPS4 "COP9 signalosome complex... 152 3.3e-08 1
MGI|MGI:1349414 - symbol:Cops4 "COP9 (constitutive photom... 152 3.3e-08 1
RGD|1302952 - symbol:Cops4 "COP9 signalosome subunit 4" s... 152 3.3e-08 1
UNIPROTKB|Q5ZJV0 - symbol:COPS4 "Uncharacterized protein"... 152 3.4e-08 1
ZFIN|ZDB-GENE-030131-4317 - symbol:cops4 "COP9 constituti... 148 9.6e-08 1
UNIPROTKB|D6RD63 - symbol:COPS4 "COP9 signalosome complex... 136 9.1e-07 1
UNIPROTKB|D6RAX7 - symbol:COPS4 "COP9 signalosome complex... 138 1.4e-06 1
DICTYBASE|DDB_G0293844 - symbol:csn4 "proteasome componen... 130 1.0e-05 1
TAIR|locus:2159961 - symbol:COP8 "AT5G42970" species:3702... 126 2.9e-05 1
WB|WBGene00000816 - symbol:csn-4 species:6239 "Caenorhabd... 124 5.2e-05 1
UNIPROTKB|Q9N359 - symbol:csn-4 "COP9 signalosome complex... 124 5.2e-05 1
UNIPROTKB|G4NCX3 - symbol:MGG_00336 "COP9 signalosome com... 123 7.0e-05 1
ASPGD|ASPL0000047008 - symbol:csnD species:162425 "Emeric... 122 8.7e-05 1
>RGD|1359305 [details] [associations]
symbol:Psmd12 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 12" species:10116 "Rattus norvegicus" [GO:0000502
"proteasome complex" evidence=IEA] [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0022624 "proteasome
accessory complex" evidence=ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 RGD:1359305
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0000502
GeneTree:ENSGT00530000063471 eggNOG:COG5071 CTD:5718
HOGENOM:HOG000194265 HOVERGEN:HBG053739 KO:K03035 OMA:WDALNEN
OrthoDB:EOG46DM2P EMBL:BC083758 IPI:IPI00198978
RefSeq:NP_001005875.1 UniGene:Rn.15873 IntAct:Q5XIC6 STRING:Q5XIC6
Ensembl:ENSRNOT00000004283 GeneID:287772 KEGG:rno:287772
UCSC:RGD:1359305 InParanoid:Q5XIC6 NextBio:626983
Genevestigator:Q5XIC6 Uniprot:Q5XIC6
Length = 456
Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
Identities = 200/305 (65%), Positives = 241/305 (79%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+KE GDV EAA+I+QELQVETYGSMEKKE+V ILEQMRLCLA KDYIRTQIISKKINT
Sbjct: 152 IKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINT 211
Query: 61 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
KFF +E + ++LKLKYY LMI+LDQHEGSYL+ CKHYRAI TPCIQ++ + L++
Sbjct: 212 KFFQEE--NTEKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESDKWQQALKS 269
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
VVLY++LAP+DNEQSDL HR+ DK L EIP YK LL+ FT EL++WS L + Y EL
Sbjct: 270 VVLYVILAPFDNEQSDLVHRISSDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGVELR 329
Query: 181 K-------TSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEE 233
K T VF+ STEEG+K +K LK+RVVEHNIR+MAKYYTRIT++RM LL L ++E
Sbjct: 330 KGSSETPATDVFS-STEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDE 388
Query: 234 TEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINK 293
+E FLS++VV+KTI AK+DR AG+INF R KDP +LN+WS LN LM LVN TTHLI K
Sbjct: 389 SEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAK 448
Query: 294 EQMIH 298
E+MIH
Sbjct: 449 EEMIH 453
>UNIPROTKB|O00232 [details] [associations]
symbol:PSMD12 "26S proteasome non-ATPase regulatory subunit
12" species:9606 "Homo sapiens" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0005838 "proteasome regulatory particle"
evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
[GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
"M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
and presentation of peptide antigen via MHC class I" evidence=TAS]
[GO:0002479 "antigen processing and presentation of exogenous
peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006521 "regulation of cellular amino acid
metabolic process" evidence=TAS] [GO:0006915 "apoptotic process"
evidence=TAS] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031145 "anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] Reactome:REACT_13505 Reactome:REACT_578
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_6850
Reactome:REACT_111217 InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0005829 Reactome:REACT_111102 Reactome:REACT_116125
Reactome:REACT_6900 GO:GO:0006915 GO:GO:0010467 GO:GO:0016071
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981 GO:GO:0044281
GO:GO:0000082 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0051436
EMBL:CH471099 GO:GO:0000216 GO:GO:0000209 GO:GO:0000084
GO:GO:0031145 GO:GO:0051437 GO:GO:0006521 Reactome:REACT_383
eggNOG:COG5071 GO:GO:0005838 CTD:5718 HOGENOM:HOG000194265
HOVERGEN:HBG053739 KO:K03035 OMA:WDALNEN EMBL:AB003103
EMBL:AK091198 EMBL:AK222679 EMBL:AC110921 EMBL:BC019062
EMBL:BC065826 IPI:IPI00185374 IPI:IPI00335069 PIR:PC6501
RefSeq:NP_002807.1 RefSeq:NP_777360.1 UniGene:Hs.592689
ProteinModelPortal:O00232 SMR:O00232 DIP:DIP-27549N IntAct:O00232
MINT:MINT-5003729 STRING:O00232 PhosphoSite:O00232 PaxDb:O00232
PeptideAtlas:O00232 PRIDE:O00232 DNASU:5718 Ensembl:ENST00000356126
Ensembl:ENST00000357146 GeneID:5718 KEGG:hsa:5718 UCSC:uc002jfy.3
GeneCards:GC17M065334 HGNC:HGNC:9557 HPA:HPA023119 MIM:604450
neXtProt:NX_O00232 PharmGKB:PA33903 InParanoid:O00232
OrthoDB:EOG46DM2P PhylomeDB:O00232 GenomeRNAi:5718 NextBio:22216
ArrayExpress:O00232 Bgee:O00232 CleanEx:HS_PSMD12
Genevestigator:O00232 GermOnline:ENSG00000197170 Uniprot:O00232
Length = 456
Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
Identities = 201/305 (65%), Positives = 240/305 (78%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+KE GDV EAA+I+QELQVETYGSMEKKE+V ILEQMRLCLA KDYIRTQIISKKINT
Sbjct: 152 IKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINT 211
Query: 61 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
KFF +E + ++LKLKYY LMI+LDQHEGSYL+ CKHYRAI TPCIQ++ + L++
Sbjct: 212 KFFQEE--NTEKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQALKS 269
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
VVLY++LAP+DNEQSDL HR+ DK L EIP YK LL+ FT EL++WS L + Y EL
Sbjct: 270 VVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGMELR 329
Query: 181 K-------TSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEE 233
K T VF STEEG+K +K LK+RVVEHNIR+MAKYYTRIT++RM LL L ++E
Sbjct: 330 KGSLESPATDVFG-STEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDE 388
Query: 234 TEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINK 293
+E FLS++VV+KTI AK+DR AGIINF R KDP +LN+WS LN LM LVN TTHLI K
Sbjct: 389 SEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAK 448
Query: 294 EQMIH 298
E+MIH
Sbjct: 449 EEMIH 453
>UNIPROTKB|Q5RBI3 [details] [associations]
symbol:PSMD12 "26S proteasome non-ATPase regulatory subunit
12" species:9601 "Pongo abelii" [GO:0022624 "proteasome accessory
complex" evidence=ISS] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0022624
CTD:5718 HOVERGEN:HBG053739 KO:K03035 EMBL:CR858665
RefSeq:NP_001125501.1 UniGene:Pab.487 ProteinModelPortal:Q5RBI3
PRIDE:Q5RBI3 GeneID:100172410 KEGG:pon:100172410 InParanoid:Q5RBI3
Uniprot:Q5RBI3
Length = 456
Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
Identities = 201/305 (65%), Positives = 240/305 (78%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+KE GDV EAA+I+QELQVETYGSMEKKE+V ILEQMRLCLA KDYIRTQIISKKINT
Sbjct: 152 IKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINT 211
Query: 61 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
KFF +E + ++LKLKYY LMI+LDQHEGSYL+ CKHYRAI TPCIQ++ + L++
Sbjct: 212 KFFQEE--NTEKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQALKS 269
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
VVLY++LAP+DNEQSDL HR+ DK L EIP YK LL+ FT EL++WS L + Y EL
Sbjct: 270 VVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGMELR 329
Query: 181 K-------TSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEE 233
K T VF STEEG+K +K LK+RVVEHNIR+MAKYYTRIT++RM LL L ++E
Sbjct: 330 KGSLESPATDVFG-STEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDE 388
Query: 234 TEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINK 293
+E FLS++VV+KTI AK+DR AGIINF R KDP +LN+WS LN LM LVN TTHLI K
Sbjct: 389 SEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAK 448
Query: 294 EQMIH 298
E+MIH
Sbjct: 449 EEMIH 453
>UNIPROTKB|F1NPQ0 [details] [associations]
symbol:LOC100859465 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0022624 "proteasome accessory complex"
evidence=IEA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
Gene3D:1.10.10.10 InterPro:IPR011991 GeneTree:ENSGT00530000063471
KO:K03035 OMA:WDALNEN EMBL:AADN02030024 IPI:IPI00589463
RefSeq:XP_003642387.1 Ensembl:ENSGALT00000005864 GeneID:100859465
KEGG:gga:100859465 Uniprot:F1NPQ0
Length = 456
Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
Identities = 199/305 (65%), Positives = 241/305 (79%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+KE G+V EAA+I+QELQVETYGSMEKKE+V ILEQMRLCLA KDYIRTQIISKKINT
Sbjct: 152 IKEQNGEVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINT 211
Query: 61 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
KFF +E + ++LKLKYY LMI+LDQHEGSYL+ CKHYRAI TPCIQ++ + L++
Sbjct: 212 KFFQEE--NTEKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQALKS 269
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
VVLY++L+PYDNEQSDL HR+ DK L EIP YK LL+ FT EL++W+ L + Y +EL
Sbjct: 270 VVLYVILSPYDNEQSDLVHRISSDKKLEEIPKYKDLLKLFTTMELMRWTALVEEYGKELR 329
Query: 181 K-------TSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEE 233
+ T VF TEEG+K +K LK+RVVEHNIR+MAKYYTRIT++RM LL L ++E
Sbjct: 330 EGSLDSPATDVFG-CTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDE 388
Query: 234 TEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINK 293
+EEFLS++VV+KTI AK+DR AGIINF R KDP ILN+WS LN LM LVN TTHLI K
Sbjct: 389 SEEFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNILNDWSHKLNSLMALVNKTTHLIAK 448
Query: 294 EQMIH 298
E+MIH
Sbjct: 449 EEMIH 453
>MGI|MGI:1914247 [details] [associations]
symbol:Psmd12 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 12" species:10090 "Mus musculus" [GO:0000502
"proteasome complex" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0022624 "proteasome accessory complex"
evidence=IDA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
MGI:MGI:1914247 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CH466558
GeneTree:ENSGT00530000063471 eggNOG:COG5071 EMBL:AL645687
GO:GO:0022624 CTD:5718 HOGENOM:HOG000194265 HOVERGEN:HBG053739
KO:K03035 OMA:WDALNEN OrthoDB:EOG46DM2P EMBL:AK007619 EMBL:AK007680
EMBL:AK009969 EMBL:AK017843 EMBL:AK151242 EMBL:AL683815
EMBL:BC004694 IPI:IPI00318982 RefSeq:NP_080170.1 UniGene:Mm.21667
ProteinModelPortal:Q9D8W5 SMR:Q9D8W5 IntAct:Q9D8W5 STRING:Q9D8W5
PhosphoSite:Q9D8W5 PaxDb:Q9D8W5 PRIDE:Q9D8W5
Ensembl:ENSMUST00000021063 GeneID:66997 KEGG:mmu:66997
InParanoid:Q9CQT4 NextBio:323262 Bgee:Q9D8W5 Genevestigator:Q9D8W5
GermOnline:ENSMUSG00000020720 Uniprot:Q9D8W5
Length = 456
Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
Identities = 200/305 (65%), Positives = 239/305 (78%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+KE GDV EAA+I+QELQVETYGSMEKKE+V ILEQMRLCLA KDYIRTQIISKKINT
Sbjct: 152 IKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINT 211
Query: 61 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
KFF +E + + LKLKYY LMI+LDQHEGSYL+ CKHYRAI TPCIQ++ + L++
Sbjct: 212 KFFQEE--NTENLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESDKWQQALKS 269
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
VVLY++LAP+DNEQSDL HR+ DK L EIP YK LL+ FT EL++WS L + Y EL
Sbjct: 270 VVLYVILAPFDNEQSDLVHRISSDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGVELR 329
Query: 181 K-------TSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEE 233
K T VF+ STEEG+K +K LK RVVEHNIR+MAKYYTRIT++RM LL L ++E
Sbjct: 330 KGSSETPATDVFS-STEEGEKRWKDLKSRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDE 388
Query: 234 TEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINK 293
+E FLS++VV+KTI AK+DR AG+INF R KDP +LN+WS LN LM LVN TTHLI K
Sbjct: 389 SEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAK 448
Query: 294 EQMIH 298
E+MIH
Sbjct: 449 EEMIH 453
>UNIPROTKB|Q2KJ25 [details] [associations]
symbol:PSMD12 "26S proteasome non-ATPase regulatory subunit
12" species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 Gene3D:1.10.10.10 InterPro:IPR011991
GeneTree:ENSGT00530000063471 eggNOG:COG5071 GO:GO:0022624
EMBL:BC105555 IPI:IPI00702341 RefSeq:NP_001039893.1
UniGene:Bt.59590 ProteinModelPortal:Q2KJ25 STRING:Q2KJ25
PRIDE:Q2KJ25 Ensembl:ENSBTAT00000003145 GeneID:538204
KEGG:bta:538204 CTD:5718 HOGENOM:HOG000194265 HOVERGEN:HBG053739
KO:K03035 OMA:WDALNEN NextBio:20877306 Uniprot:Q2KJ25
Length = 456
Score = 985 (351.8 bits), Expect = 3.1e-99, P = 3.1e-99
Identities = 200/305 (65%), Positives = 239/305 (78%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+KE GDV EAA+I+QELQVETYGSMEKKE+V ILEQMRLCLA KDYIRTQIISKKINT
Sbjct: 152 IKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINT 211
Query: 61 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
KFF +E + ++LKLKYY LMI+LDQHEGSYL+ CKHYRAI TPCIQ++ + L++
Sbjct: 212 KFFQEE--NTEKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQALKS 269
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
VVLY++LAP+DNEQSDL HR+ DK L EIP YK LL+ FT EL++WS L + Y EL
Sbjct: 270 VVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGMELR 329
Query: 181 K-------TSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEE 233
K T VF TEEG+K +K LK+RVVEHNIR+MAKYYTRIT++RM LL L ++E
Sbjct: 330 KGSLESPATDVFGY-TEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDE 388
Query: 234 TEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINK 293
+E FLS++VV+KTI AK+DR AGIINF R KDP +LN+WS LN LM LVN TTHLI K
Sbjct: 389 SEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAK 448
Query: 294 EQMIH 298
E+MIH
Sbjct: 449 EEMIH 453
>UNIPROTKB|F1RSM2 [details] [associations]
symbol:PSMD12 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 Gene3D:1.10.10.10
InterPro:IPR011991 GeneTree:ENSGT00530000063471 KO:K03035
OMA:WDALNEN EMBL:CU466377 RefSeq:XP_003483009.1
Ensembl:ENSSSCT00000018803 GeneID:100524394 KEGG:ssc:100524394
Uniprot:F1RSM2
Length = 456
Score = 985 (351.8 bits), Expect = 3.1e-99, P = 3.1e-99
Identities = 200/305 (65%), Positives = 239/305 (78%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+KE GDV EAA+I+QELQVETYGSMEKKE+V ILEQMRLCLA KDYIRTQIISKKINT
Sbjct: 152 IKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINT 211
Query: 61 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
KFF +E + ++LKLKYY LMI+LDQHEGSYL+ CKHYRAI TPCIQ++ + L++
Sbjct: 212 KFFQEE--NTEKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQALKS 269
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
VVLY++LAP+DNEQSDL HR+ DK L EIP YK LL+ FT EL++WS L + Y EL
Sbjct: 270 VVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGMELR 329
Query: 181 K-------TSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEE 233
K T VF TEEG+K +K LK+RVVEHNIR+MAKYYTRIT++RM LL L ++E
Sbjct: 330 KGSLESPATDVFGY-TEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDE 388
Query: 234 TEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINK 293
+E FLS++VV+KTI AK+DR AGIINF R KDP +LN+WS LN LM LVN TTHLI K
Sbjct: 389 SEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAK 448
Query: 294 EQMIH 298
E+MIH
Sbjct: 449 EEMIH 453
>ZFIN|ZDB-GENE-030131-617 [details] [associations]
symbol:psmd12 "proteasome (prosome, macropain) 26S
subunit, non-ATPase, 12" species:7955 "Danio rerio" [GO:0000502
"proteasome complex" evidence=IEA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 ZFIN:ZDB-GENE-030131-617 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0000502 GeneTree:ENSGT00530000063471
CTD:5718 HOVERGEN:HBG053739 KO:K03035 OMA:WDALNEN EMBL:CR759902
EMBL:BC042325 IPI:IPI00511230 RefSeq:NP_963872.1 UniGene:Dr.51730
STRING:Q8AW07 Ensembl:ENSDART00000126186 GeneID:321898
KEGG:dre:321898 InParanoid:Q8AW07 NextBio:20807575 Uniprot:Q8AW07
Length = 456
Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
Identities = 196/305 (64%), Positives = 234/305 (76%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+KE GDV EAA I+QELQVETYGSMEKKEK ILEQMRLC+A KDYIRTQIISKKINT
Sbjct: 152 IKEQSGDVKEAAAILQELQVETYGSMEKKEKAEFILEQMRLCIAVKDYIRTQIISKKINT 211
Query: 61 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
KFF +E +ELKLKYY LMI++D HEGSYL+ CKHYRAI TPCI D + L++
Sbjct: 212 KFFQEE--GTEELKLKYYNLMIQVDLHEGSYLSICKHYRAIYDTPCILEDSSKWQQALKS 269
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
VVLY++LAPYDNEQSDL HR+ DK L EIP Y+ LL+ FT EL++WS + + Y +EL
Sbjct: 270 VVLYVILAPYDNEQSDLVHRISTDKKLEEIPKYRDLLKQFTTMELMRWSSVVEDYGKELR 329
Query: 181 K-------TSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEE 233
+ T VF TEEG+K +K LK+RVVEHNIR+MAKYYT IT+ RM LL L ++E
Sbjct: 330 EGSMGTPDTDVFT-CTEEGEKRWKDLKNRVVEHNIRIMAKYYTSITMGRMAALLDLSVDE 388
Query: 234 TEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINK 293
+EEFLS++VV+KTI AK+DR AGIINF R KDP ++LN+WS LN LM LVN TTHLI K
Sbjct: 389 SEEFLSNLVVNKTIYAKVDRLAGIINFQRPKDPNDLLNDWSQKLNSLMSLVNKTTHLIAK 448
Query: 294 EQMIH 298
E+MIH
Sbjct: 449 EEMIH 453
>FB|FBgn0028690 [details] [associations]
symbol:Rpn5 "Regulatory particle non-ATPase 5" species:7227
"Drosophila melanogaster" [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=ISS;NAS] [GO:0004175
"endopeptidase activity" evidence=IDA] [GO:0005838 "proteasome
regulatory particle" evidence=ISS;IDA] [GO:0006508 "proteolysis"
evidence=ISS;IDA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
EMBL:AE014297 GO:GO:0006508 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0004175 GO:GO:0008541 GeneTree:ENSGT00530000063471
eggNOG:COG5071 BRENDA:3.4.25.1 KO:K03035 OMA:WDALNEN EMBL:AF145315
EMBL:AY058339 RefSeq:NP_649588.1 UniGene:Dm.3426 SMR:Q9V3Z4
IntAct:Q9V3Z4 MINT:MINT-1656415 STRING:Q9V3Z4
EnsemblMetazoa:FBtr0078629 GeneID:40717 KEGG:dme:Dmel_CG1100
UCSC:CG1100-RA CTD:40717 FlyBase:FBgn0028690 InParanoid:Q9V3Z4
OrthoDB:EOG4HT77K GenomeRNAi:40717 NextBio:820233 Uniprot:Q9V3Z4
Length = 502
Score = 436 (158.5 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
Identities = 84/182 (46%), Positives = 119/182 (65%)
Query: 122 VLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFK 181
VLY +LAP+DNEQSD+ + ++K L E+P YK +L+ F + ELI + + L +
Sbjct: 318 VLYCVLAPFDNEQSDMMAHLSKNKKLEEVPAYKEILRLFMSKELINFDTFNADFGLVLAE 377
Query: 182 TSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSM 241
+F ST+ G+KC LK R++EHNIR++A YY+R+ L RM +LL LP EE+LS +
Sbjct: 378 NEMFKDSTKHGKKCITELKDRLIEHNIRIIAMYYSRLHLARMSELLNLPTSRCEEYLSKL 437
Query: 242 VVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIHQRV 301
+ TI KIDRPAGII F + K +ILN W+ +N+LM LVN T HLINKE+ ++ +
Sbjct: 438 ANTDTIRVKIDRPAGIIYFTQKKSASDILNNWATDVNQLMSLVNKTCHLINKEECVYSVM 497
Query: 302 AA 303
A
Sbjct: 498 CA 499
Score = 312 (114.9 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
Identities = 63/105 (60%), Positives = 83/105 (79%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+KE +GDV AA +++ELQVETYGSM+K+EKV LILEQMRLCL K+DY+ TQII+KKI+
Sbjct: 152 IKEADGDVAGAATVMEELQVETYGSMDKREKVELILEQMRLCLLKEDYVSTQIIAKKISI 211
Query: 61 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 105
KFFDD +LKLK+Y LMI+L++ + S+L T +HY+AI P
Sbjct: 212 KFFDDPAQ--HDLKLKFYYLMIQLNR-DTSFLNTSRHYQAIAEPP 253
>ASPGD|ASPL0000076235 [details] [associations]
symbol:AN4775 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0043248
"proteasome assembly" evidence=IEA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0031144 "proteasome localization" evidence=IEA] [GO:0010388
"cullin deneddylation" evidence=IEA] [GO:0008541 "proteasome
regulatory particle, lid subcomplex" evidence=IEA] [GO:0034399
"nuclear periphery" evidence=IEA] [GO:0008180 "signalosome"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0034515 "proteasome storage granule" evidence=IEA]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0000502 EMBL:BN001303 EMBL:AACD01000081
eggNOG:COG5071 HOGENOM:HOG000194265 KO:K03035 OrthoDB:EOG41G6CN
RefSeq:XP_662379.1 ProteinModelPortal:Q5B3V5 STRING:Q5B3V5
EnsemblFungi:CADANIAT00005647 GeneID:2872576 KEGG:ani:AN4775.2
OMA:ILANHDY Uniprot:Q5B3V5
Length = 487
Score = 564 (203.6 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
Identities = 110/235 (46%), Positives = 159/235 (67%)
Query: 68 DDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNVVLYLML 127
DDV +LKL+YY I L H+ YL CKHYR +L T +Q +P Q AVL +V Y++L
Sbjct: 240 DDVTDLKLRYYEQQIILANHDYKYLDVCKHYREVLDTDSVQENPEQLRAVLARIVYYIVL 299
Query: 128 APYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFN- 186
+PYDNEQSDL HR+ +D L+ +P+ L++ FT PEL++W + + + L T VF+
Sbjct: 300 SPYDNEQSDLLHRIQQDTRLSAVPVESRLVKLFTVPELMRWPIVAEQFGPHLCNTDVFSP 359
Query: 187 ---QSTEEGQ-KCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMV 242
QS E+ + ++ L+ RV+EHN+RV+AKYYTRI + R+ LL L EETE+++S +V
Sbjct: 360 KPSQSAEDRPYRRWQDLRKRVIEHNVRVVAKYYTRIEMGRLTQLLDLTEEETEKYISELV 419
Query: 243 VSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMI 297
SKTI AKIDRPA ++NFA+ +D ++LNEWS+ + L+ L+ HLI KE+M+
Sbjct: 420 TSKTIYAKIDRPARLVNFAKPRDADDVLNEWSSDMRSLLGLLERIDHLITKEEMM 474
Score = 172 (65.6 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
Identities = 34/78 (43%), Positives = 56/78 (71%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+K+ +GD+ AA+I+ ELQVET+GSM ++EK ILEQ+ LC+ + D+ + ++S+KIN
Sbjct: 142 IKKSQGDLNAAADILCELQVETFGSMTRREKTEFILEQVALCIERGDWTQATVLSRKINK 201
Query: 61 KFFDDE-KDDVQEL-KLK 76
++F + K +E+ KLK
Sbjct: 202 RYFARKPKKSAEEIEKLK 219
>DICTYBASE|DDB_G0281051 [details] [associations]
symbol:psmD12 "26S proteasome non-ATPase regulatory
subunit 12" species:44689 "Dictyostelium discoideum" [GO:0003674
"molecular_function" evidence=ND] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
dictyBase:DDB_G0281051 GenomeReviews:CM000152_GR EMBL:AAFI02000040
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006511 eggNOG:COG5071
GO:GO:0005838 KO:K03035 OMA:WDALNEN RefSeq:XP_640786.1
ProteinModelPortal:Q54UJ0 STRING:Q54UJ0 PRIDE:Q54UJ0
EnsemblProtists:DDB0232995 GeneID:8622839 KEGG:ddi:DDB_G0281051
ProtClustDB:CLSZ2729043 Uniprot:Q54UJ0
Length = 447
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 131/299 (43%), Positives = 196/299 (65%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+KEDEGD+ AA I+Q+LQVETYG+MEK+EK+T ++QMR+C+ KD+IR Q+I K+N
Sbjct: 153 IKEDEGDIASAAKILQDLQVETYGTMEKREKITFFIDQMRICMNNKDFIRAQLIGNKVNR 212
Query: 61 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
K + D+ Q+LK+ Y++ MI H +Y+ + Y +I TP ++ D Q L+
Sbjct: 213 KTLAE--DENQDLKIDYFKQMIRYFSHSANYIEIARCYLSIYDTPSVEKDTPQLLQTLKY 270
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
+ +Y++L+ NEQSDL +RV E K L +I YK LL F ELI+WS +L + EL
Sbjct: 271 ICIYVILSASSNEQSDLLNRVYEFKPLTDIQNYKDLLNQFKTLELIRWSTFFELNKPELD 330
Query: 181 KTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSS 240
+VF TE ++ L+ RV+EHNIRV++ YY +I+ R+ +LL L ++E+E+F+S
Sbjct: 331 SQTVFK--TEPN--AWEDLRKRVIEHNIRVISTYYQKISTARLAELLDLSLDESEKFVSD 386
Query: 241 MVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIHQ 299
+V +KTI AKIDRPAGI F DP ++LN W+ ++ L+ LV T HL+ +E M+H+
Sbjct: 387 LVSNKTIFAKIDRPAGIATFTTTNDPNKVLNAWANNITSLLDLVEKTNHLVQREFMLHK 445
>POMBASE|SPAC1420.03 [details] [associations]
symbol:rpn501 "19S proteasome regulatory subunit Rpn501"
species:4896 "Schizosaccharomyces pombe" [GO:0000502 "proteasome
complex" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005635 "nuclear envelope"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IC] [GO:0031144
"proteasome localization" evidence=IGI] [GO:0034399 "nuclear
periphery" evidence=IDA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IGI]
[GO:0043248 "proteasome assembly" evidence=IGI] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 PomBase:SPAPB8E5.02c PomBase:SPAC1420.03
GO:GO:0005829 GO:GO:0007346 GO:GO:0005635 EMBL:CU329670
GO:GO:0043161 GenomeReviews:CU329670_GR Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0000502 GO:GO:0043248 GO:GO:0034399
GO:GO:0031144 HOGENOM:HOG000194265 KO:K03035 EMBL:U97377 PIR:T37666
RefSeq:NP_593278.1 RefSeq:NP_594776.1 ProteinModelPortal:Q9UTM3
STRING:Q9UTM3 PRIDE:Q9UTM3 EnsemblFungi:SPAC1420.03.1
EnsemblFungi:SPAPB8E5.02c.1 GeneID:2542907 GeneID:2543347
KEGG:spo:SPAC1420.03 KEGG:spo:SPAPB8E5.02c OMA:CDEKIPL
OrthoDB:EOG41G6CN NextBio:20803946 Uniprot:Q9UTM3
Length = 443
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 134/305 (43%), Positives = 193/305 (63%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+KE++GD+ A I+ VETYGS + KEKV IL+Q+RL L + DY +KKIN
Sbjct: 140 IKEEQGDIKSAQEILCNEPVETYGSFDLKEKVAFILDQVRLFLLRSDYYMASTYTKKINV 199
Query: 61 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
KFF EK+DVQ LKLKYY I + H+ +YL CK+YRA+ T +Q DP + +L+N
Sbjct: 200 KFF--EKEDVQSLKLKYYEQKIRIGLHDDAYLDVCKYYRAVYDTAVVQEDPEKWKEILEN 257
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
VV + +L PYDNEQ+DL HR+ D LN +PL + L++ F EL++W + ++Y L
Sbjct: 258 VVCFALLTPYDNEQADLLHRINADHKLNSLPLLQQLVKCFIVNELMRWPKIAEIYGSALR 317
Query: 181 KTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSS 240
VF ++ E+G+K + L+ RV+EHNIRV+A YY+RI R+ LL + ETE+FL
Sbjct: 318 SNPVFAENDEKGEKRWSELRKRVIEHNIRVVANYYSRIHCSRLGVLLDMSPSETEQFLCD 377
Query: 241 MVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQM---I 297
++ AKIDRPA +I+F ++++ E LNEW +++ EL+ + LI KE+M I
Sbjct: 378 LIAKHHFYAKIDRPAQVISFKKSQNVQEQLNEWGSNITELLGKLEKVRQLIIKEEMMNSI 437
Query: 298 HQRVA 302
Q VA
Sbjct: 438 QQAVA 442
>POMBASE|SPAPB8E5.02c [details] [associations]
symbol:rpn502 "19S proteasome regulatory subunit
Rpn502" species:4896 "Schizosaccharomyces pombe" [GO:0000502
"proteasome complex" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IC] [GO:0031144 "proteasome localization" evidence=IGI]
[GO:0034399 "nuclear periphery" evidence=IDA] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=IGI] [GO:0043248 "proteasome assembly" evidence=IGI]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 PomBase:SPAPB8E5.02c
PomBase:SPAC1420.03 GO:GO:0005829 GO:GO:0007346 GO:GO:0005635
EMBL:CU329670 GO:GO:0043161 GenomeReviews:CU329670_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0000502 GO:GO:0043248
GO:GO:0034399 GO:GO:0031144 HOGENOM:HOG000194265 KO:K03035
EMBL:U97377 PIR:T37666 RefSeq:NP_593278.1 RefSeq:NP_594776.1
ProteinModelPortal:Q9UTM3 STRING:Q9UTM3 PRIDE:Q9UTM3
EnsemblFungi:SPAC1420.03.1 EnsemblFungi:SPAPB8E5.02c.1
GeneID:2542907 GeneID:2543347 KEGG:spo:SPAC1420.03
KEGG:spo:SPAPB8E5.02c OMA:CDEKIPL OrthoDB:EOG41G6CN
NextBio:20803946 Uniprot:Q9UTM3
Length = 443
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 134/305 (43%), Positives = 193/305 (63%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+KE++GD+ A I+ VETYGS + KEKV IL+Q+RL L + DY +KKIN
Sbjct: 140 IKEEQGDIKSAQEILCNEPVETYGSFDLKEKVAFILDQVRLFLLRSDYYMASTYTKKINV 199
Query: 61 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
KFF EK+DVQ LKLKYY I + H+ +YL CK+YRA+ T +Q DP + +L+N
Sbjct: 200 KFF--EKEDVQSLKLKYYEQKIRIGLHDDAYLDVCKYYRAVYDTAVVQEDPEKWKEILEN 257
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
VV + +L PYDNEQ+DL HR+ D LN +PL + L++ F EL++W + ++Y L
Sbjct: 258 VVCFALLTPYDNEQADLLHRINADHKLNSLPLLQQLVKCFIVNELMRWPKIAEIYGSALR 317
Query: 181 KTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSS 240
VF ++ E+G+K + L+ RV+EHNIRV+A YY+RI R+ LL + ETE+FL
Sbjct: 318 SNPVFAENDEKGEKRWSELRKRVIEHNIRVVANYYSRIHCSRLGVLLDMSPSETEQFLCD 377
Query: 241 MVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQM---I 297
++ AKIDRPA +I+F ++++ E LNEW +++ EL+ + LI KE+M I
Sbjct: 378 LIAKHHFYAKIDRPAQVISFKKSQNVQEQLNEWGSNITELLGKLEKVRQLIIKEEMMNSI 437
Query: 298 HQRVA 302
Q VA
Sbjct: 438 QQAVA 442
>TAIR|locus:2176100 [details] [associations]
symbol:RPN5B "AT5G64760" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;IDA;TAS] [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0030163 "protein catabolic process" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0000502 "proteasome complex"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0009407 "toxin catabolic process" evidence=RCA] [GO:0042023
"DNA endoreduplication" evidence=RCA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=RCA]
[GO:0043248 "proteasome assembly" evidence=RCA] [GO:0051510
"regulation of unidimensional cell growth" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
[GO:0080129 "proteasome core complex assembly" evidence=RCA]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 EMBL:CP002688 Gene3D:1.10.10.10
InterPro:IPR011991 UniGene:At.27199 UniGene:At.71233 GO:GO:0030163
GO:GO:0000502 eggNOG:COG5071 KO:K03035 OMA:CDEKIPL EMBL:AY062093
EMBL:AY062113 EMBL:AY124872 EMBL:AY230833 IPI:IPI00543192
RefSeq:NP_568994.2 ProteinModelPortal:Q8VWK0 SMR:Q8VWK0
IntAct:Q8VWK0 STRING:Q8VWK0 PaxDb:Q8VWK0 PRIDE:Q8VWK0
EnsemblPlants:AT5G64760.1 GeneID:836597 KEGG:ath:AT5G64760
ProtClustDB:CLSN2687519 Genevestigator:Q8VWK0 Uniprot:Q8VWK0
Length = 442
Score = 477 (173.0 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
Identities = 101/227 (44%), Positives = 141/227 (62%)
Query: 73 LKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNVVLYLMLAPYDN 132
LK YY LMI H Y+ C+ Y+AI P ++ +P Q VL+ + +L LAP+D
Sbjct: 212 LKRIYYELMIRYYSHNNEYIEICRSYKAIYDIPSVKENPEQWIPVLRKICWFLALAPHDP 271
Query: 133 EQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEG 192
QS L + LEDK L+EIP +K LL+ E+I+W+ L Y++E F+ G
Sbjct: 272 MQSSLLNATLEDKKLSEIPDFKMLLKQIVTMEVIQWTSLWNKYKDE-FENEKNMIGGSLG 330
Query: 193 QKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKID 252
K + LK R++EHNI V++KYY+RIT +R+ +LL L EE E+ LS MVVSK + AKID
Sbjct: 331 DKAGEDLKLRIIEHNILVVSKYYSRITFKRLAELLCLTTEEAEKHLSEMVVSKALIAKID 390
Query: 253 RPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIHQ 299
RP+GII F KD EILN W+ +L +L+ LV + H I+KE M+H+
Sbjct: 391 RPSGIICFQIVKDSNEILNSWATNLEKLLDLVEKSCHQIHKETMVHK 437
Score = 200 (75.5 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
Identities = 38/74 (51%), Positives = 57/74 (77%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+KE++G + EAA+++QE+ VET+G+M K EK+ ILEQ+RLCL +KD++R QI+S+KIN
Sbjct: 119 IKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDQKDFVRAQILSRKINP 178
Query: 61 KFFDDEKDDVQELK 74
+ FD D +E K
Sbjct: 179 RVFD--ADTTKEKK 190
>WB|WBGene00004461 [details] [associations]
symbol:rpn-5 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 GO:GO:0009792
GO:GO:0000003 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:FO081114
GeneTree:ENSGT00530000063471 eggNOG:COG5071 HOGENOM:HOG000194265
KO:K03035 OMA:WDALNEN PIR:F88130 RefSeq:NP_494835.1
ProteinModelPortal:Q19324 SMR:Q19324 STRING:Q19324 PaxDb:Q19324
EnsemblMetazoa:F10G7.8.1 EnsemblMetazoa:F10G7.8.2
EnsemblMetazoa:F10G7.8.3 GeneID:173807 KEGG:cel:CELE_F10G7.8
UCSC:F10G7.8.1 CTD:173807 WormBase:F10G7.8 InParanoid:Q19324
NextBio:881195 Uniprot:Q19324
Length = 490
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 136/309 (44%), Positives = 206/309 (66%)
Query: 3 EDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 62
E EG + EAA ++ ELQVETYGSME +EKV +LEQMR L + D++R IISKKIN KF
Sbjct: 176 EREGKLDEAATMLLELQVETYGSMEMREKVQYLLEQMRYSLVRNDFVRATIISKKINIKF 235
Query: 63 FD-DEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNV 121
F+ ++D+VQ LKLKYY MI + H+G+YL C+H+R I T I++D + + L++
Sbjct: 236 FNKSDEDEVQNLKLKYYDSMIRIGLHDGNYLDVCRHHREIYETKKIKADSAKATSHLRSA 295
Query: 122 VLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSG-LRQLYEEELF 180
++Y +LAP+ NEQ DL +R+ + L +P YK +L F N ELI + G + YE+ L
Sbjct: 296 IVYCLLAPHTNEQWDLLNRIAIQRELETVPDYKIILDLFINQELISFKGTIVAKYEKLLR 355
Query: 181 K-------TSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEE 233
+ T +F++STE G+K + L RV EHN+R++AKYYT+IT +R+ +LL P++E
Sbjct: 356 RGTTSSPDTGIFDKSTE-GEKRWSDLHLRVGEHNMRMIAKYYTQITFERLAELLDFPVDE 414
Query: 234 TEEFLSSMVVSKTIT-AKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLIN 292
E F+ +++V+ IT AK+ RP+ I+N K E L+ W++++++L +N +HLI
Sbjct: 415 MESFVCNLIVTGQITGAKLHRPSRIVNLRLKKANVEQLDVWASNVHKLTDTLNKVSHLIL 474
Query: 293 KEQMIHQRV 301
KEQM+H+ +
Sbjct: 475 KEQMVHKNL 483
>SGD|S000002306 [details] [associations]
symbol:RPN5 "Subunit of the CSN and 26S proteasome lid
complexes" species:4932 "Saccharomyces cerevisiae" [GO:0008541
"proteasome regulatory particle, lid subcomplex" evidence=IDA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0010388 "cullin deneddylation" evidence=IMP] [GO:0008180
"signalosome" evidence=IDA] [GO:0034515 "proteasome storage
granule" evidence=IDA] [GO:0000502 "proteasome complex"
evidence=IEA;IDA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
SGD:S000002306 EMBL:BK006938 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008541 GO:GO:0006511 GO:GO:0008180 EMBL:X97751 GO:GO:0010388
GeneTree:ENSGT00530000063471 eggNOG:COG5071 GO:GO:0034515 PDB:4B4T
PDBsum:4B4T HOGENOM:HOG000194265 KO:K03035 OMA:WDALNEN
OrthoDB:EOG41G6CN EMBL:Z74195 PIR:S67695 RefSeq:NP_010134.1
ProteinModelPortal:Q12250 SMR:Q12250 DIP:DIP-1578N IntAct:Q12250
MINT:MINT-391026 STRING:Q12250 PaxDb:Q12250 PeptideAtlas:Q12250
EnsemblFungi:YDL147W GeneID:851408 KEGG:sce:YDL147W NextBio:968585
Genevestigator:Q12250 GermOnline:YDL147W Uniprot:Q12250
Length = 445
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 118/298 (39%), Positives = 195/298 (65%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+K++EG + EAA+I+ ELQVETYGSME EK+ ILEQM L + K DY + ++S+KI
Sbjct: 146 IKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILK 205
Query: 61 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
K F + K + LKL+YY L++++ H+ YL ++ + I T I+SD + VL +
Sbjct: 206 KTFKNPK--YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSH 263
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
+V +L+L+PY N Q+DL H++ D L ++ + L++ FT EL++W +++ YE L
Sbjct: 264 IVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323
Query: 181 KTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSS 240
+ + E + ++ L+ RV+EHN+RV+++YY+RITL R+ +LL L +TE ++S
Sbjct: 324 EDDLAFGG-EANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISD 382
Query: 241 MVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIH 298
+V I AK++RPA I+NF + K+ ++LNEWS +++EL++ + HLI KE+++H
Sbjct: 383 LVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIGHLITKEEIMH 440
>GENEDB_PFALCIPARUM|PF10_0174 [details] [associations]
symbol:PF10_0174 "26s proteasome subunit p55,
putative" species:5833 "Plasmodium falciparum" [GO:0004175
"endopeptidase activity" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0005838 "proteasome regulatory particle" evidence=ISS]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0004175 GO:GO:0006511 EMBL:AE014185
GO:GO:0005838 HOGENOM:HOG000194265 KO:K03035 OMA:CDEKIPL
RefSeq:XP_001347459.1 ProteinModelPortal:Q8IJM0 PRIDE:Q8IJM0
EnsemblProtists:PF10_0174:mRNA GeneID:810332 KEGG:pfa:PF10_0174
EuPathDB:PlasmoDB:PF3D7_1017900 ProtClustDB:CLSZ2433075
Uniprot:Q8IJM0
Length = 467
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 121/301 (40%), Positives = 192/301 (63%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+KE++G++ EAANI+Q++QVET+ SM K++K ILEQMRL L +KD+IR +IS+KIN
Sbjct: 157 IKEEDGNIEEAANILQDVQVETFISMNKRDKTEYILEQMRLVLLRKDFIRCHVISRKINP 216
Query: 61 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
+ E + +LKLKYY MI+ +E SYL K Y T + +D ++
Sbjct: 217 SLLNTE--EFADLKLKYYMYMIQYYINEESYLDVAKCYEERFHTDIVLNDRNLWIDEMKC 274
Query: 121 VVLYLMLAPYDNEQSDLTHRV-LEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEEL 179
+++L+L+PYD +Q+ L++ + ++ K L EIP+Y+ L+Q F +LI+W Y++EL
Sbjct: 275 YIIFLILSPYDEQQNKLSNLLKMQKKKLKEIPIYQNLVQDFIEQDLIQWP---LPYQQEL 331
Query: 180 FKTSVFNQSTE-EGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFL 238
F +F+ S GQ + K +V+ HNI V++ Y +I+L R+ LL IE++E L
Sbjct: 332 FNFFIFDDSIFLGGQNRKDLFKKKVMHHNIHVISNCYDQISLNRLAQLLNASIEDSENLL 391
Query: 239 SSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIH 298
S +V +K I +KIDR GII F + K+P +LN WS +N+++ L+ ++HLI KE+M+H
Sbjct: 392 SELVSAKFINSKIDRLNGIIKFGQKKNPENLLNSWSLQINDILDLLEESSHLIQKERMLH 451
Query: 299 Q 299
+
Sbjct: 452 E 452
>UNIPROTKB|Q8IJM0 [details] [associations]
symbol:PF10_0174 "26s proteasome subunit p55, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004175
"endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=ISS] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0004175 GO:GO:0006511 EMBL:AE014185 GO:GO:0005838
HOGENOM:HOG000194265 KO:K03035 OMA:CDEKIPL RefSeq:XP_001347459.1
ProteinModelPortal:Q8IJM0 PRIDE:Q8IJM0
EnsemblProtists:PF10_0174:mRNA GeneID:810332 KEGG:pfa:PF10_0174
EuPathDB:PlasmoDB:PF3D7_1017900 ProtClustDB:CLSZ2433075
Uniprot:Q8IJM0
Length = 467
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 121/301 (40%), Positives = 192/301 (63%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+KE++G++ EAANI+Q++QVET+ SM K++K ILEQMRL L +KD+IR +IS+KIN
Sbjct: 157 IKEEDGNIEEAANILQDVQVETFISMNKRDKTEYILEQMRLVLLRKDFIRCHVISRKINP 216
Query: 61 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
+ E + +LKLKYY MI+ +E SYL K Y T + +D ++
Sbjct: 217 SLLNTE--EFADLKLKYYMYMIQYYINEESYLDVAKCYEERFHTDIVLNDRNLWIDEMKC 274
Query: 121 VVLYLMLAPYDNEQSDLTHRV-LEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEEL 179
+++L+L+PYD +Q+ L++ + ++ K L EIP+Y+ L+Q F +LI+W Y++EL
Sbjct: 275 YIIFLILSPYDEQQNKLSNLLKMQKKKLKEIPIYQNLVQDFIEQDLIQWP---LPYQQEL 331
Query: 180 FKTSVFNQSTE-EGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFL 238
F +F+ S GQ + K +V+ HNI V++ Y +I+L R+ LL IE++E L
Sbjct: 332 FNFFIFDDSIFLGGQNRKDLFKKKVMHHNIHVISNCYDQISLNRLAQLLNASIEDSENLL 391
Query: 239 SSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIH 298
S +V +K I +KIDR GII F + K+P +LN WS +N+++ L+ ++HLI KE+M+H
Sbjct: 392 SELVSAKFINSKIDRLNGIIKFGQKKNPENLLNSWSLQINDILDLLEESSHLIQKERMLH 451
Query: 299 Q 299
+
Sbjct: 452 E 452
>TAIR|locus:2178138 [details] [associations]
symbol:EMB2107 "AT5G09900" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=ISS] [GO:0009793 "embryo
development ending in seed dormancy" evidence=NAS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=RCA;TAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007275 "multicellular
organismal development" evidence=IMP] [GO:0000502 "proteasome
complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0009407 "toxin catabolic process" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009651 "response to salt
stress" evidence=RCA] [GO:0009853 "photorespiration" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0042023 "DNA
endoreduplication" evidence=RCA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=RCA]
[GO:0043248 "proteasome assembly" evidence=RCA] [GO:0046686
"response to cadmium ion" evidence=RCA] [GO:0051510 "regulation of
unidimensional cell growth" evidence=RCA] [GO:0051788 "response to
misfolded protein" evidence=RCA] [GO:0080129 "proteasome core
complex assembly" evidence=RCA] GO:GO:0007275 GO:GO:0005829
GO:GO:0009506 GO:GO:0005634 EMBL:CP002688 EMBL:AB016893
GO:GO:0000502 eggNOG:COG5071 HOGENOM:HOG000194265 KO:K03035
IPI:IPI00891946 RefSeq:NP_001119202.1 UniGene:At.20339
ProteinModelPortal:B3H6B0 STRING:B3H6B0 PaxDb:B3H6B0 PRIDE:B3H6B0
EnsemblPlants:AT5G09900.3 GeneID:830850 KEGG:ath:AT5G09900
TAIR:At5g09900 OMA:ANNDTIR PhylomeDB:B3H6B0 Genevestigator:B3H6B0
Uniprot:B3H6B0
Length = 462
Score = 234 (87.4 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 54/136 (39%), Positives = 77/136 (56%)
Query: 72 ELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNVVLYLMLAPYD 131
ELK YY LMI H Y+ C+ Y+AI P ++ P Q VL+ + +L+LAP+D
Sbjct: 211 ELKRIYYELMIRYYSHNNEYIEICRSYKAIYDIPSVKETPEQWIPVLRKICWFLVLAPHD 270
Query: 132 NEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKT-SVFNQSTE 190
QS L + LEDK L+EIP +K LL+ E+I+W+ L Y++E K S+ S
Sbjct: 271 PMQSSLLNATLEDKNLSEIPDFKMLLKQVVTMEVIQWTSLWNKYKDEFEKEKSMIGGSL- 329
Query: 191 EGQKCFKMLKHRVVEH 206
G K + LK R++EH
Sbjct: 330 -GDKAGEDLKLRIIEH 344
Score = 207 (77.9 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 38/75 (50%), Positives = 59/75 (78%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+KE++G + EAA+++QE+ VET+G+M K EK+ ILEQ+RLCL ++D++R QI+S+KIN
Sbjct: 119 IKEEQGQIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDFVRAQILSRKINP 178
Query: 61 KFFD-DEKDDVQELK 74
+ FD D K D ++ K
Sbjct: 179 RVFDADTKKDKKKPK 193
>UNIPROTKB|G5EHP6 [details] [associations]
symbol:MGCH7_ch7g327 "26S proteasome regulatory subunit
RPN5" species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0000502 EMBL:CM000230
EMBL:CM001237 KO:K03035 RefSeq:XP_003721188.1
ProteinModelPortal:G5EHP6 EnsemblFungi:MGG_02608T0 GeneID:2682348
KEGG:mgr:MGG_02608 Uniprot:G5EHP6
Length = 507
Score = 294 (108.6 bits), Expect = 1.7e-25, P = 1.7e-25
Identities = 89/306 (29%), Positives = 159/306 (51%)
Query: 4 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILE-QMRLCLAKKDYIRTQII---SKKIN 59
+ GD T+A + +++ + KK L E Q R AKK + ++ + +
Sbjct: 186 ESGDWTQAGILSRKISTKYLARKPKKTPEQLEKEKQEREKKAKKGDVVPEVEVDDTTDLK 245
Query: 60 TKFFDDE----KDDVQELKL-KYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQR 114
++++ + + + + L + K+YR +++ + E K RA+L I +
Sbjct: 246 LRYYEQQVILSQHEDKYLDVCKHYRQVLDTEAVEED---PAK-LRAVLQR-VIYFIILSP 300
Query: 115 HAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQL 174
H Q+ +L+ + N Q L +L+ ++E+ + + + F P L
Sbjct: 301 HDNEQHDLLHRIHRDTRNSQIQLDAELLKLFTVHELMRWPEVAKTF-GPHLCSTDVFSNQ 359
Query: 175 YEEELFKTSVFNQSTEEGQKCFKM---LKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPI 231
+ + +T++ K K L+ RV+EHN+RV+A+YYTRI + R+ +LL L
Sbjct: 360 PPPSASSNTTPSAATDKVVKPHKRWEDLRKRVIEHNVRVIARYYTRIRMDRLTELLDLAE 419
Query: 232 EETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLI 291
EETE+++S +V SKT+ AKIDRPA I+NFA+ +D ++LNEWS+++ L+ L+ HLI
Sbjct: 420 EETEKYISDLVTSKTVYAKIDRPARIVNFAKPRDADDVLNEWSSNMKSLLGLLERIDHLI 479
Query: 292 NKEQMI 297
KE+M+
Sbjct: 480 TKEEMM 485
Score = 160 (61.4 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 28/62 (45%), Positives = 48/62 (77%)
Query: 1 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 60
+K+++GD+ A +I+ ELQVET+GSME++EK +L+Q+ LC+ D+ + I+S+KI+T
Sbjct: 143 IKKEQGDLKAATDILCELQVETFGSMERREKTQFLLDQVALCIESGDWTQAGILSRKIST 202
Query: 61 KF 62
K+
Sbjct: 203 KY 204
>FB|FBgn0027054 [details] [associations]
symbol:CSN4 "COP9 complex homolog subunit 4" species:7227
"Drosophila melanogaster" [GO:0008180 "signalosome"
evidence=ISS;NAS;IMP;TAS;IPI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0001751 "compound eye photoreceptor cell
differentiation" evidence=IMP] [GO:0000338 "protein deneddylation"
evidence=IMP] [GO:0019781 "NEDD8 activating enzyme activity"
evidence=IMP] [GO:0050821 "protein stabilization" evidence=IMP]
[GO:0032435 "negative regulation of proteasomal ubiquitin-dependent
protein catabolic process" evidence=IMP] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0007095 "mitotic
G2 DNA damage checkpoint" evidence=IGI] [GO:0046331 "lateral
inhibition" evidence=IMP] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 EMBL:AE013599 GO:GO:0005737 GO:GO:0007095
GO:GO:0050821 GO:GO:0048477 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0044212 GO:GO:0046331 GO:GO:0008180 GO:GO:0001751
GO:GO:0032435 GO:GO:0000338 GO:GO:0019781 eggNOG:NOG298640
KO:K12178 OMA:YNELSYR GeneTree:ENSGT00530000063471 EMBL:AF129082
EMBL:BT004883 RefSeq:NP_001163080.1 RefSeq:NP_477444.1
UniGene:Dm.3377 ProteinModelPortal:Q9V345 SMR:Q9V345 IntAct:Q9V345
MINT:MINT-279079 STRING:Q9V345 PaxDb:Q9V345 PRIDE:Q9V345
EnsemblMetazoa:FBtr0088859 EnsemblMetazoa:FBtr0301230 GeneID:35759
KEGG:dme:Dmel_CG8725 CTD:35759 FlyBase:FBgn0027054
InParanoid:Q9V345 OrthoDB:EOG441NSS PhylomeDB:Q9V345
GenomeRNAi:35759 NextBio:795082 Bgee:Q9V345 GermOnline:CG8725
Uniprot:Q9V345
Length = 407
Score = 179 (68.1 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 64/285 (22%), Positives = 130/285 (45%)
Query: 10 EAANIIQELQVETYGSMEKKE-KVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKD 68
+AA ++ + +ET E K+ L+ RL L D ++ ++ + + + +
Sbjct: 129 DAATVLVGIPLETGQKQYSVECKLGTYLKIARLYLEDNDSVQAELFINRASLLQAETNSE 188
Query: 69 DVQEL-KLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNVVLYLML 127
++Q L K+ Y R+ LD + ++ + Y + + D +R L+ ++ +L
Sbjct: 189 ELQVLYKVCYARV---LD-YRRKFIEAAQRYNELSYRKIV--DQGERMTALKKALICTVL 242
Query: 128 APYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQ 187
A ++S + + +D+ +P Y G+L+ +I+ S L++ E L +
Sbjct: 243 ASAGQQRSRMLATLFKDERCQHLPAY-GILEKMYLERIIRRSELQEF--EALLQDHQ-KA 298
Query: 188 STEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTI 247
+T +G +L V EHN+ +K Y IT + + LL +P + E+ S M+ +
Sbjct: 299 ATSDGSS---ILDRAVFEHNLLSASKLYNNITFEELGALLDIPAVKAEKIASQMITEGRM 355
Query: 248 TAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLIN 292
ID+ + I++F N+ E+L +W + L VN+ I+
Sbjct: 356 NGHIDQISAIVHF-ENR---ELLPQWDRQIQSLCYQVNSIIEKIS 396
>UNIPROTKB|Q3SZA0 [details] [associations]
symbol:COPS4 "COP9 signalosome complex subunit 4"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0010388 "cullin deneddylation" evidence=IEA] [GO:0008180
"signalosome" evidence=IEA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008180 GO:GO:0010388 eggNOG:NOG298640 HOGENOM:HOG000158382
KO:K12178 OMA:YNELSYR EMBL:BC103017 IPI:IPI00700909
RefSeq:NP_001029866.1 UniGene:Bt.48928 ProteinModelPortal:Q3SZA0
SMR:Q3SZA0 STRING:Q3SZA0 PRIDE:Q3SZA0 Ensembl:ENSBTAT00000009128
GeneID:540223 KEGG:bta:540223 CTD:51138
GeneTree:ENSGT00530000063471 HOVERGEN:HBG051136 InParanoid:Q3SZA0
OrthoDB:EOG4MGS7F NextBio:20878499 Uniprot:Q3SZA0
Length = 406
Score = 152 (58.6 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 62/293 (21%), Positives = 126/293 (43%)
Query: 3 EDEGDVTEAANIIQELQVETYGSMEKKE-KVTLILEQMRLCLAKKDYIRTQIISKKINTK 61
E E D AA ++ + +ET + K+ L+ RL L D ++ + + +
Sbjct: 115 EKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLL 174
Query: 62 FFDDEKDDVQ-ELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
+ + +Q K+ Y R+ LD + ++ + Y + + +R L++
Sbjct: 175 QNESTNEQLQIHYKVCYARV---LD-YRRKFIEAAQRYNELSYKTIVHES--ERLEALKH 228
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
+ +LA ++S + + +D+ ++ Y G+L+ +I+ + L++ + L
Sbjct: 229 ALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQLQE-FAAMLM 286
Query: 181 KTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSS 240
+T +G +L V+EHN+ +K Y IT + + LL +P + E+ S
Sbjct: 287 PHQ--KATTADGSS---ILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQ 341
Query: 241 MVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINK 293
M+ + ID+ GI++F + E L W + L VNN I++
Sbjct: 342 MITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSLCFQVNNLLEKISQ 390
>UNIPROTKB|E2RT55 [details] [associations]
symbol:COPS4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008180 "signalosome" evidence=IEA]
[GO:0010388 "cullin deneddylation" evidence=IEA] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008180 GO:GO:0010388 KO:K12178 OMA:YNELSYR
GeneTree:ENSGT00530000063471 EMBL:AAEX03016729
RefSeq:XP_003640149.1 ProteinModelPortal:E2RT55 SMR:E2RT55
PRIDE:E2RT55 Ensembl:ENSCAFT00000014418 GeneID:100856586
KEGG:cfa:100856586 NextBio:20853792 Uniprot:E2RT55
Length = 406
Score = 152 (58.6 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 62/293 (21%), Positives = 126/293 (43%)
Query: 3 EDEGDVTEAANIIQELQVETYGSMEKKE-KVTLILEQMRLCLAKKDYIRTQIISKKINTK 61
E E D AA ++ + +ET + K+ L+ RL L D ++ + + +
Sbjct: 115 EKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLL 174
Query: 62 FFDDEKDDVQ-ELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
+ + +Q K+ Y R+ LD + ++ + Y + + +R L++
Sbjct: 175 QNESTNEQLQIHYKVCYARV---LD-YRRKFIEAAQRYNELSYKTIVHES--ERLEALKH 228
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
+ +LA ++S + + +D+ ++ Y G+L+ +I+ + L++ + L
Sbjct: 229 ALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQLQE-FAAMLM 286
Query: 181 KTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSS 240
+T +G +L V+EHN+ +K Y IT + + LL +P + E+ S
Sbjct: 287 PHQ--KATTADGSS---ILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQ 341
Query: 241 MVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINK 293
M+ + ID+ GI++F + E L W + L VNN I++
Sbjct: 342 MITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSLCFQVNNLLEKISQ 390
>UNIPROTKB|Q9BT78 [details] [associations]
symbol:COPS4 "COP9 signalosome complex subunit 4"
species:9606 "Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008180 "signalosome" evidence=IDA] [GO:0010388 "cullin
deneddylation" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:CH471057 GO:GO:0008180 GO:GO:0010388 eggNOG:NOG298640
HOGENOM:HOG000158382 KO:K12178 CTD:51138 HOVERGEN:HBG051136
OrthoDB:EOG4MGS7F EMBL:AF100757 EMBL:AK001210 EMBL:AK024005
EMBL:BC004302 EMBL:BC009292 EMBL:BC093007 IPI:IPI00171844
RefSeq:NP_001244935.1 RefSeq:NP_057213.2 UniGene:Hs.190384
ProteinModelPortal:Q9BT78 SMR:Q9BT78 DIP:DIP-34516N IntAct:Q9BT78
MINT:MINT-1464138 STRING:Q9BT78 PhosphoSite:Q9BT78 DMDM:55976582
OGP:Q9BT78 REPRODUCTION-2DPAGE:IPI00171844 PaxDb:Q9BT78
PeptideAtlas:Q9BT78 PRIDE:Q9BT78 Ensembl:ENST00000264389
GeneID:51138 KEGG:hsa:51138 UCSC:uc003hoa.3 GeneCards:GC04P083955
HGNC:HGNC:16702 HPA:HPA036894 neXtProt:NX_Q9BT78 PharmGKB:PA26756
InParanoid:Q9BT78 PhylomeDB:Q9BT78 ChiTaRS:COPS4 GenomeRNAi:51138
NextBio:53990 ArrayExpress:Q9BT78 Bgee:Q9BT78 CleanEx:HS_COPS4
Genevestigator:Q9BT78 GermOnline:ENSG00000138663 Uniprot:Q9BT78
Length = 406
Score = 152 (58.6 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 62/293 (21%), Positives = 126/293 (43%)
Query: 3 EDEGDVTEAANIIQELQVETYGSMEKKE-KVTLILEQMRLCLAKKDYIRTQIISKKINTK 61
E E D AA ++ + +ET + K+ L+ RL L D ++ + + +
Sbjct: 115 EKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLL 174
Query: 62 FFDDEKDDVQ-ELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
+ + +Q K+ Y R+ LD + ++ + Y + + +R L++
Sbjct: 175 QNESTNEQLQIHYKVCYARV---LD-YRRKFIEAAQRYNELSYKTIVHES--ERLEALKH 228
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
+ +LA ++S + + +D+ ++ Y G+L+ +I+ + L++ + L
Sbjct: 229 ALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQLQE-FAAMLM 286
Query: 181 KTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSS 240
+T +G +L V+EHN+ +K Y IT + + LL +P + E+ S
Sbjct: 287 PHQ--KATTADGSS---ILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQ 341
Query: 241 MVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINK 293
M+ + ID+ GI++F + E L W + L VNN I++
Sbjct: 342 MITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSLCFQVNNLLEKISQ 390
>UNIPROTKB|A7Y521 [details] [associations]
symbol:COPS4 "COP9 signalosome complex subunit 4"
species:9823 "Sus scrofa" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0010388 "cullin deneddylation" evidence=IEA] [GO:0008180
"signalosome" evidence=IEA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008180 eggNOG:NOG298640 HOGENOM:HOG000158382 KO:K12178
OMA:YNELSYR CTD:51138 GeneTree:ENSGT00530000063471
HOVERGEN:HBG051136 OrthoDB:EOG4MGS7F EMBL:EF635914
RefSeq:NP_001098774.1 UniGene:Ssc.5658 ProteinModelPortal:A7Y521
SMR:A7Y521 STRING:A7Y521 PRIDE:A7Y521 Ensembl:ENSSSCT00000010121
GeneID:100125960 KEGG:ssc:100125960 Uniprot:A7Y521
Length = 406
Score = 152 (58.6 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 62/293 (21%), Positives = 126/293 (43%)
Query: 3 EDEGDVTEAANIIQELQVETYGSMEKKE-KVTLILEQMRLCLAKKDYIRTQIISKKINTK 61
E E D AA ++ + +ET + K+ L+ RL L D ++ + + +
Sbjct: 115 EKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLL 174
Query: 62 FFDDEKDDVQ-ELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
+ + +Q K+ Y R+ LD + ++ + Y + + +R L++
Sbjct: 175 QNESTNEQLQIHYKVCYARV---LD-YRRKFIEAAQRYNELSYKTIVHES--ERLEALKH 228
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
+ +LA ++S + + +D+ ++ Y G+L+ +I+ + L++ + L
Sbjct: 229 ALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQLQE-FAAMLM 286
Query: 181 KTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSS 240
+T +G +L V+EHN+ +K Y IT + + LL +P + E+ S
Sbjct: 287 PHQ--KATTADGSS---ILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQ 341
Query: 241 MVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINK 293
M+ + ID+ GI++F + E L W + L VNN I++
Sbjct: 342 MITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSLCFQVNNLLEKISQ 390
>MGI|MGI:1349414 [details] [associations]
symbol:Cops4 "COP9 (constitutive photomorphogenic) homolog,
subunit 4 (Arabidopsis thaliana)" species:10090 "Mus musculus"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008180
"signalosome" evidence=ISO;IDA] [GO:0010388 "cullin deneddylation"
evidence=ISO] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
MGI:MGI:1349414 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008180 GO:GO:0010388 eggNOG:NOG298640 HOGENOM:HOG000158382
KO:K12178 OMA:YNELSYR CTD:51138 HOVERGEN:HBG051136
OrthoDB:EOG4MGS7F EMBL:AF071314 EMBL:AK009955 IPI:IPI00131871
RefSeq:NP_036131.1 UniGene:Mm.957 PDB:1UFM PDBsum:1UFM
ProteinModelPortal:O88544 SMR:O88544 IntAct:O88544 STRING:O88544
PhosphoSite:O88544 REPRODUCTION-2DPAGE:O88544 PaxDb:O88544
PRIDE:O88544 Ensembl:ENSMUST00000045993 GeneID:26891 KEGG:mmu:26891
InParanoid:O88544 EvolutionaryTrace:O88544 NextBio:304719
Bgee:O88544 Genevestigator:O88544 GermOnline:ENSMUSG00000035297
Uniprot:O88544
Length = 406
Score = 152 (58.6 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 62/293 (21%), Positives = 126/293 (43%)
Query: 3 EDEGDVTEAANIIQELQVETYGSMEKKE-KVTLILEQMRLCLAKKDYIRTQIISKKINTK 61
E E D AA ++ + +ET + K+ L+ RL L D ++ + + +
Sbjct: 115 EKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLL 174
Query: 62 FFDDEKDDVQ-ELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
+ + +Q K+ Y R+ LD + ++ + Y + + +R L++
Sbjct: 175 QNESTNEQLQIHYKVCYARV---LD-YRRKFIEAAQRYNELSYKTIVHES--ERLEALKH 228
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
+ +LA ++S + + +D+ ++ Y G+L+ +I+ + L++ + L
Sbjct: 229 ALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQLQE-FAAMLM 286
Query: 181 KTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSS 240
+T +G +L V+EHN+ +K Y IT + + LL +P + E+ S
Sbjct: 287 PHQ--KATTADGSS---ILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQ 341
Query: 241 MVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINK 293
M+ + ID+ GI++F + E L W + L VNN I++
Sbjct: 342 MITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSLCFQVNNLLEKISQ 390
>RGD|1302952 [details] [associations]
symbol:Cops4 "COP9 signalosome subunit 4" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008180 "signalosome"
evidence=IEA;ISO] [GO:0010388 "cullin deneddylation"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 RGD:1302952
GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0008180
GO:GO:0010388 eggNOG:NOG298640 HOGENOM:HOG000158382 KO:K12178
OMA:YNELSYR CTD:51138 GeneTree:ENSGT00530000063471
HOVERGEN:HBG051136 OrthoDB:EOG4MGS7F EMBL:BC079384 IPI:IPI00193349
RefSeq:NP_001004275.1 UniGene:Rn.7506 ProteinModelPortal:Q68FS2
SMR:Q68FS2 STRING:Q68FS2 PhosphoSite:Q68FS2 PRIDE:Q68FS2
Ensembl:ENSRNOT00000003046 GeneID:360915 KEGG:rno:360915
InParanoid:Q68FS2 NextBio:674575 Genevestigator:Q68FS2
GermOnline:ENSRNOG00000023650 Uniprot:Q68FS2
Length = 406
Score = 152 (58.6 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 62/293 (21%), Positives = 126/293 (43%)
Query: 3 EDEGDVTEAANIIQELQVETYGSMEKKE-KVTLILEQMRLCLAKKDYIRTQIISKKINTK 61
E E D AA ++ + +ET + K+ L+ RL L D ++ + + +
Sbjct: 115 EKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLL 174
Query: 62 FFDDEKDDVQ-ELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
+ + +Q K+ Y R+ LD + ++ + Y + + +R L++
Sbjct: 175 QNESTNEQLQIHYKVCYARV---LD-YRRKFIEAAQRYNELSYKTIVHES--ERLEALKH 228
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
+ +LA ++S + + +D+ ++ Y G+L+ +I+ + L++ + L
Sbjct: 229 ALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQLQE-FAAMLM 286
Query: 181 KTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSS 240
+T +G +L V+EHN+ +K Y IT + + LL +P + E+ S
Sbjct: 287 PHQ--KATTADGSS---ILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQ 341
Query: 241 MVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINK 293
M+ + ID+ GI++F + E L W + L VNN I++
Sbjct: 342 MITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSLCFQVNNLLEKISQ 390
>UNIPROTKB|Q5ZJV0 [details] [associations]
symbol:COPS4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008180 "signalosome" evidence=IEA] [GO:0010388 "cullin
deneddylation" evidence=IEA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0008180
GO:GO:0010388 eggNOG:NOG298640 HOGENOM:HOG000158382 KO:K12178
OMA:YNELSYR CTD:51138 GeneTree:ENSGT00530000063471
HOVERGEN:HBG051136 OrthoDB:EOG4MGS7F EMBL:AADN02009032
EMBL:AJ720334 IPI:IPI00578250 RefSeq:NP_001006447.1
UniGene:Gga.6980 SMR:Q5ZJV0 IntAct:Q5ZJV0 STRING:Q5ZJV0
Ensembl:ENSGALT00000018144 GeneID:422594 KEGG:gga:422594
InParanoid:Q5ZJV0 NextBio:20825204 Uniprot:Q5ZJV0
Length = 411
Score = 152 (58.6 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 62/293 (21%), Positives = 126/293 (43%)
Query: 3 EDEGDVTEAANIIQELQVETYGSMEKKE-KVTLILEQMRLCLAKKDYIRTQIISKKINTK 61
E E D AA ++ + +ET + K+ L+ RL L D ++ + + +
Sbjct: 120 EKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLL 179
Query: 62 FFDDEKDDVQ-ELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
+ + +Q K+ Y R+ LD + ++ + Y + + +R L++
Sbjct: 180 QNESTNEQLQIHYKVCYARV---LD-YRRKFIEAAQRYNELSYKSIVHES--ERLEALKH 233
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
+ +LA ++S + + +D+ ++ Y G+L+ +I+ + L++ + L
Sbjct: 234 ALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQLQE-FAAMLM 291
Query: 181 KTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSS 240
+T +G +L V+EHN+ +K Y IT + + LL +P + E+ S
Sbjct: 292 PHQ--KATTADGSS---ILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQ 346
Query: 241 MVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINK 293
M+ + ID+ GI++F + E L W + L VNN I++
Sbjct: 347 MITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSLCFQVNNLLEKISQ 395
>ZFIN|ZDB-GENE-030131-4317 [details] [associations]
symbol:cops4 "COP9 constitutive photomorphogenic
homolog subunit 4 (Arabidopsis)" species:7955 "Danio rerio"
[GO:0008150 "biological_process" evidence=ND] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008180 "signalosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000717
InterPro:IPR011990 Pfam:PF01399 SMART:SM00088
ZFIN:ZDB-GENE-030131-4317 GO:GO:0005737 Gene3D:1.10.10.10
InterPro:IPR011991 Gene3D:1.25.40.10 GO:GO:0008180
HOGENOM:HOG000158382 KO:K12178 OMA:YNELSYR CTD:51138
GeneTree:ENSGT00530000063471 HOVERGEN:HBG051136 OrthoDB:EOG4MGS7F
EMBL:BC056527 EMBL:BC065617 IPI:IPI00488179 RefSeq:NP_991119.1
UniGene:Dr.77245 ProteinModelPortal:Q6P0H6 SMR:Q6P0H6 STRING:Q6P0H6
PRIDE:Q6P0H6 Ensembl:ENSDART00000064215 GeneID:325592
KEGG:dre:325592 eggNOG:COG5071 InParanoid:Q6P0H6 NextBio:20809371
Bgee:Q6P0H6 Uniprot:Q6P0H6
Length = 406
Score = 148 (57.2 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 61/293 (20%), Positives = 127/293 (43%)
Query: 3 EDEGDVTEAANIIQELQVETYGSMEKKE-KVTLILEQMRLCLAKKDYIRTQIISKKINTK 61
E + D AA ++ + +ET + K+ L+ RL L D ++ + + +
Sbjct: 115 EKQEDWRNAAQVLVGIPLETGQKQYNVDYKLDTYLKIARLYLEDDDPVQAEAYINRASLL 174
Query: 62 FFDDEKDDVQ-ELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
+ + +Q K+ Y R+ LD + ++ + Y + + +R L++
Sbjct: 175 QNESTNEQLQIHYKVCYARV---LD-YRRKFIEAAQRYNELSYKSIVHE--TERLEALKH 228
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
+ +LA ++S + + +D+ ++ Y G+L+ +I+ + L++ + L
Sbjct: 229 ALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQLQE-FAAMLM 286
Query: 181 KTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSS 240
+T +G +L V+EHN+ +K Y IT + + LL +P + E+ S
Sbjct: 287 PHQ--KATTADGSS---ILDRAVIEHNLLSASKLYNNITFEELGALLEIPPAKAEKIASQ 341
Query: 241 MVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINK 293
M+ + ID+ GI++F ++P L W + L VNN I++
Sbjct: 342 MITEGRMNGFIDQIDGIVHF-ETREP---LPTWDKQIQSLCFQVNNLLEKISQ 390
>UNIPROTKB|D6RD63 [details] [associations]
symbol:COPS4 "COP9 signalosome complex subunit 4"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 HOGENOM:HOG000158382 HGNC:HGNC:16702
ChiTaRS:COPS4 EMBL:AC021105 EMBL:AC073840 EMBL:AC108473
IPI:IPI00966084 ProteinModelPortal:D6RD63 SMR:D6RD63
Ensembl:ENST00000509317 ArrayExpress:D6RD63 Bgee:D6RD63
Uniprot:D6RD63
Length = 275
Score = 136 (52.9 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 54/257 (21%), Positives = 111/257 (43%)
Query: 31 KVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQ-ELKLKYYRLMIELDQHEG 89
K+ L+ RL L D ++ + + + + + +Q K+ Y R+ LD +
Sbjct: 32 KLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARV---LD-YRR 87
Query: 90 SYLATCKHYRAILTTPCIQSDPVQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNE 149
++ + Y + + +R L++ + +LA ++S + + +D+ +
Sbjct: 88 KFIEAAQRYNELSYKTIVHES--ERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQ 145
Query: 150 IPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIR 209
+ Y G+L+ +I+ + L++ + L +T +G +L V+EHN+
Sbjct: 146 LAAY-GILEKMYLDRIIRGNQLQE-FAAMLMPHQ--KATTADGSS---ILDRAVIEHNLL 198
Query: 210 VMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEI 269
+K Y IT + + LL +P + E+ S M+ + ID+ GI++F + E
Sbjct: 199 SASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREA 254
Query: 270 LNEWSASLNELMKLVNN 286
L W + L VNN
Sbjct: 255 LPTWDKQIQSLCFQVNN 271
>UNIPROTKB|D6RAX7 [details] [associations]
symbol:COPS4 "COP9 signalosome complex subunit 4"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 HOGENOM:HOG000158382 OMA:YNELSYR HGNC:HGNC:16702
ChiTaRS:COPS4 EMBL:AC021105 EMBL:AC073840 EMBL:AC108473
IPI:IPI00966770 ProteinModelPortal:D6RAX7 SMR:D6RAX7
Ensembl:ENST00000511653 ArrayExpress:D6RAX7 Bgee:D6RAX7
Uniprot:D6RAX7
Length = 420
Score = 138 (53.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 56/273 (20%), Positives = 118/273 (43%)
Query: 3 EDEGDVTEAANIIQELQVETYGSMEKKE-KVTLILEQMRLCLAKKDYIRTQIISKKINTK 61
E E D AA ++ + +ET + K+ L+ RL L D ++ + + +
Sbjct: 115 EKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLL 174
Query: 62 FFDDEKDDVQ-ELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQN 120
+ + +Q K+ Y R+ LD + ++ + Y + + +R L++
Sbjct: 175 QNESTNEQLQIHYKVCYARV---LD-YRRKFIEAAQRYNELSYKTIVHES--ERLEALKH 228
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
+ +LA ++S + + +D+ ++ Y G+L+ +I+ + L++ + L
Sbjct: 229 ALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQLQE-FAAMLM 286
Query: 181 KTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSS 240
+T +G +L V+EHN+ +K Y IT + + LL +P + E+ S
Sbjct: 287 PHQ--KATTADGSS---ILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQ 341
Query: 241 MVVSKTITAKIDRPAGIINFARNKDPGEILNEW 273
M+ + ID+ GI++F + + I W
Sbjct: 342 MITEGRMNGFIDQIDGIVHFETSGNHQSIFCLW 374
>DICTYBASE|DDB_G0293844 [details] [associations]
symbol:csn4 "proteasome component region PCI (PINT)
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0008180 "signalosome" evidence=IEA;ISS;IPI] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 dictyBase:DDB_G0293844 GO:GO:0005737
GenomeReviews:CM000155_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008180 eggNOG:NOG298640 KO:K12178 OMA:YNELSYR EMBL:DQ309432
EMBL:AAFI02000222 RefSeq:XP_628938.1 HSSP:O88544
ProteinModelPortal:Q54B82 SMR:Q54B82 STRING:Q54B82 PRIDE:Q54B82
EnsemblProtists:DDB0233102 GeneID:8629446 KEGG:ddi:DDB_G0293844
ProtClustDB:CLSZ2429214 Uniprot:Q54B82
Length = 393
Score = 130 (50.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 49/223 (21%), Positives = 100/223 (44%)
Query: 71 QELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNVVLYLMLAPY 130
Q+L L + + ++ +L Y + + C+ D + HA L ++ +L
Sbjct: 178 QKLILAHKTCFARIMDYKRMFLKASLRYYDL--SQCLPKDTERMHA-LSCAIVCAILDKA 234
Query: 131 DNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTE 190
++S + +D+ ++ +Y L + F ++K + +++ + E+L + S
Sbjct: 235 GPQRSRTLATLYKDERSQQLGVYTFLEKMFLE-RILKKTEVKK-FAEQLKPHQMALLS-- 290
Query: 191 EGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 250
+G +L V+EHN+ +K Y IT + LL + E+ E+ S MV + +
Sbjct: 291 DGNT---VLDRAVIEHNLLSASKLYNNITFDELGSLLEIQAEKAEKVASKMVCEERLIGS 347
Query: 251 IDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINK 293
ID+ +I F ++ G+ L +W + L +NN I+K
Sbjct: 348 IDQIERLIQF---ENVGDSLTQWDKKIEGLCIHMNNIIESISK 387
>TAIR|locus:2159961 [details] [associations]
symbol:COP8 "AT5G42970" species:3702 "Arabidopsis
thaliana" [GO:0008180 "signalosome" evidence=IDA;TAS;IPI]
[GO:0009640 "photomorphogenesis" evidence=RCA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0010388 "cullin deneddylation"
evidence=RCA;IMP] [GO:0010971 "positive regulation of G2/M
transition of mitotic cell cycle" evidence=IMP] [GO:0043234
"protein complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 GO:GO:0007275
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000085
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009585 EMBL:AB008264
GO:GO:0008180 GO:GO:0010388 EMBL:AF176089 EMBL:AF395060
EMBL:AY087068 EMBL:AK176360 IPI:IPI00545035 PIR:T52302
RefSeq:NP_199111.1 UniGene:At.23570 ProteinModelPortal:Q8L5U0
SMR:Q8L5U0 IntAct:Q8L5U0 STRING:Q8L5U0 PaxDb:Q8L5U0 PRIDE:Q8L5U0
EnsemblPlants:AT5G42970.1 GeneID:834312 KEGG:ath:AT5G42970
GeneFarm:4497 TAIR:At5g42970 eggNOG:NOG298640 HOGENOM:HOG000158382
InParanoid:Q8L5U0 KO:K12178 OMA:YNELSYR PhylomeDB:Q8L5U0
ProtClustDB:CLSN2686637 Genevestigator:Q8L5U0 GermOnline:AT5G42970
Uniprot:Q8L5U0
Length = 397
Score = 126 (49.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 60/302 (19%), Positives = 137/302 (45%)
Query: 3 EDEGDVTEAANIIQELQVET-YGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 61
E E + ++AA ++ + +++ +++ K++ ++ RL L D + + K +
Sbjct: 107 ESEQEWSKAAQMLSGIDLDSGMRAVDDNFKLSKCIQIARLYLEDDDAVNAEAFINKASF- 165
Query: 62 FFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYR-AILTTPCIQSDPVQRHAV--- 117
+ +++V L+ K I LD A ++Y + + I + + +A+
Sbjct: 166 LVSNSQNEVLNLQYKVCYARI-LDMKRKFLEAALRYYGISQIEQRQIGDEEIDENALEQA 224
Query: 118 LQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEE 177
L V +LA ++S + + +D+ +++ +Y +LQ +++ + + E
Sbjct: 225 LSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYP-ILQKVYLERILRRPEI-DAFSE 282
Query: 178 ELF---KTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEET 234
EL K S+ ++ST +L ++EHN+ +K YT I + LL + +
Sbjct: 283 ELRPHQKASLPDKST--------VLDRAMIEHNLLSASKLYTNIRFDELGTLLAIDPRKA 334
Query: 235 EEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKE 294
E+ ++M+ + ID+ +I+F +D E L +W ++ L + +N+ + K+
Sbjct: 335 EKIAANMIGQDRMRGSIDQEEAVIHF---EDDVEELQQWDQQISGLCQALNDILDGMAKK 391
Query: 295 QM 296
M
Sbjct: 392 GM 393
>WB|WBGene00000816 [details] [associations]
symbol:csn-4 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 GO:GO:0009792 GO:GO:0005737
GO:GO:0040007 GO:GO:0030154 GO:GO:0002119 GO:GO:0040011
GO:GO:0048477 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0000910
GO:GO:0040035 GO:GO:0008180 eggNOG:NOG298640 HOGENOM:HOG000158382
KO:K12178 GeneTree:ENSGT00530000063471 EMBL:FO081813
RefSeq:NP_500034.1 ProteinModelPortal:Q9N359 SMR:Q9N359
DIP:DIP-27076N IntAct:Q9N359 MINT:MINT-1078091 STRING:Q9N359
PaxDb:Q9N359 PRIDE:Q9N359 EnsemblMetazoa:Y55F3AM.15.1
EnsemblMetazoa:Y55F3AM.15.2 GeneID:176927 KEGG:cel:CELE_Y55F3AM.15
UCSC:Y55F3AM.15 CTD:176927 WormBase:Y55F3AM.15 InParanoid:Q9N359
OMA:LCNKYLP NextBio:894618 Uniprot:Q9N359
Length = 412
Score = 124 (48.7 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 55/296 (18%), Positives = 127/296 (42%)
Query: 3 EDEGDVTEAANIIQELQVETY----GSMEKKE--KVTLILEQMRLCLAKKDYIRTQIISK 56
E EG + +AA + + +T G KE K L + +L L + +
Sbjct: 122 EKEGRIKDAAQALIAINSDTSPKFNGPQAAKEGAKAQLCIRITKLLLDCSEIDEAEQYVN 181
Query: 57 KINTKFFD-DEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRH 115
+ + D D+Q +++ L + + ++ + Y + T + + +
Sbjct: 182 RTSILMVDLGANPDIQ---IEHKALQARVSDAKRRFVEAAQRYYELSATEQLPNS--DKL 236
Query: 116 AVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLY 175
L ++ ++LA ++S L + +D+ + ++ + + + ++I L + +
Sbjct: 237 TALGKAIVCVLLAKPGPQRSRLLTLIFKDERAPKCASFELIAKMYLT-KVIHKDELEE-F 294
Query: 176 EEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETE 235
E +L ++ E G+ +LK + EHNI +++ Y I+ + + LLG+ E E
Sbjct: 295 EHQL---QDHQKADEHGES---ILKGVIQEHNITAISQLYINISFKTLGQLLGVDTEAAE 348
Query: 236 EFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLI 291
M+ S+ + ID+ GI++F + +P + W + + ++ +N + +I
Sbjct: 349 SMAGEMISSERLHGYIDQTNGILHF-EDSNPMRV---WDSQILSTLEQINKVSDMI 400
>UNIPROTKB|Q9N359 [details] [associations]
symbol:csn-4 "COP9 signalosome complex subunit 4"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0009792 GO:GO:0005737 GO:GO:0040007 GO:GO:0030154
GO:GO:0002119 GO:GO:0040011 GO:GO:0048477 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0000910 GO:GO:0040035 GO:GO:0008180
eggNOG:NOG298640 HOGENOM:HOG000158382 KO:K12178
GeneTree:ENSGT00530000063471 EMBL:FO081813 RefSeq:NP_500034.1
ProteinModelPortal:Q9N359 SMR:Q9N359 DIP:DIP-27076N IntAct:Q9N359
MINT:MINT-1078091 STRING:Q9N359 PaxDb:Q9N359 PRIDE:Q9N359
EnsemblMetazoa:Y55F3AM.15.1 EnsemblMetazoa:Y55F3AM.15.2
GeneID:176927 KEGG:cel:CELE_Y55F3AM.15 UCSC:Y55F3AM.15 CTD:176927
WormBase:Y55F3AM.15 InParanoid:Q9N359 OMA:LCNKYLP NextBio:894618
Uniprot:Q9N359
Length = 412
Score = 124 (48.7 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 55/296 (18%), Positives = 127/296 (42%)
Query: 3 EDEGDVTEAANIIQELQVETY----GSMEKKE--KVTLILEQMRLCLAKKDYIRTQIISK 56
E EG + +AA + + +T G KE K L + +L L + +
Sbjct: 122 EKEGRIKDAAQALIAINSDTSPKFNGPQAAKEGAKAQLCIRITKLLLDCSEIDEAEQYVN 181
Query: 57 KINTKFFD-DEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRH 115
+ + D D+Q +++ L + + ++ + Y + T + + +
Sbjct: 182 RTSILMVDLGANPDIQ---IEHKALQARVSDAKRRFVEAAQRYYELSATEQLPNS--DKL 236
Query: 116 AVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLY 175
L ++ ++LA ++S L + +D+ + ++ + + + ++I L + +
Sbjct: 237 TALGKAIVCVLLAKPGPQRSRLLTLIFKDERAPKCASFELIAKMYLT-KVIHKDELEE-F 294
Query: 176 EEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETE 235
E +L ++ E G+ +LK + EHNI +++ Y I+ + + LLG+ E E
Sbjct: 295 EHQL---QDHQKADEHGES---ILKGVIQEHNITAISQLYINISFKTLGQLLGVDTEAAE 348
Query: 236 EFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLI 291
M+ S+ + ID+ GI++F + +P + W + + ++ +N + +I
Sbjct: 349 SMAGEMISSERLHGYIDQTNGILHF-EDSNPMRV---WDSQILSTLEQINKVSDMI 400
>UNIPROTKB|G4NCX3 [details] [associations]
symbol:MGG_00336 "COP9 signalosome complex subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
EMBL:CM001235 Gene3D:1.10.10.10 InterPro:IPR011991 KO:K12178
RefSeq:XP_003718747.1 ProteinModelPortal:G4NCX3 SMR:G4NCX3
EnsemblFungi:MGG_00336T0 GeneID:2675149 KEGG:mgr:MGG_00336
Uniprot:G4NCX3
Length = 420
Score = 123 (48.4 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 66/305 (21%), Positives = 124/305 (40%)
Query: 3 EDEGDVTEAANIIQELQVETYGSMEKKEKVTLI-LEQMRLCLAKKDYIRTQIISKKINTK 61
E D T+AA + E+ +++ +E++ + + +R L D K+
Sbjct: 117 EHNEDWTDAAKTLAEIPLDSSQRRATEEEMVRVWIRIVRNYLEADDSTTAGSYLNKVKNV 176
Query: 62 FFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNV 121
F K ++L L + ++ + +LA Y I +P I + +R L
Sbjct: 177 IF---KVQDRDLNLHFRLSQARINDSQREFLAASHAYHEISLSPQIAEE--ERLHTLSMA 231
Query: 122 VLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFK 181
+ +LAP +S R+ D+ Y G+L+ L+ G + + L
Sbjct: 232 IKCAVLAPAGPLRSRALGRLYRDERSAGQEEY-GILEKMFLDRLLS-PGEVDKFAQGLSP 289
Query: 182 TSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSM 241
+ +T +G +L VVEHN+ ++ Y I + +LLGL + EE + M
Sbjct: 290 HQL--ATTADGST---VLAKAVVEHNLLGASRLYDNIGFDELGELLGLDGAKAEETTARM 344
Query: 242 VVSKTITAKIDR-----------PAGIINFARNKDP-GEILNEWSASLNELMKLVNNTTH 289
+ + +ID+ +G+ R K G+ + W A++ +L + V + T
Sbjct: 345 IEQGRLVGRIDQVDRVIWFESGEASGVKGSGRAKVVVGKEIRRWDANVQDLAEEVEHVTS 404
Query: 290 LINKE 294
L+ KE
Sbjct: 405 LLQKE 409
>ASPGD|ASPL0000047008 [details] [associations]
symbol:csnD species:162425 "Emericella nidulans"
[GO:0070791 "cleistothecium development" evidence=IMP] [GO:0008180
"signalosome" evidence=ISS;IDA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0030448 "hyphal growth" evidence=IMP] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005737 EMBL:BN001307 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AACD01000025 GO:GO:0008180 eggNOG:NOG298640
HOGENOM:HOG000158382 KO:K12178 HSSP:O88544 EMBL:AF236662
RefSeq:XP_659143.1 ProteinModelPortal:Q9C467 STRING:Q9C467
EnsemblFungi:CADANIAT00008166 GeneID:2875265 KEGG:ani:AN1539.2
OMA:QARISDY OrthoDB:EOG4SR158 Uniprot:Q9C467
Length = 408
Score = 122 (48.0 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 67/305 (21%), Positives = 122/305 (40%)
Query: 3 EDEGDVTEAANIIQELQVETYGSM-EKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 61
E E + AA +Q + +++ + KV L + +RL L + D + +I K
Sbjct: 116 EAEEEYIAAARALQGIHIDSSQRLVSDSAKVKLWIRIVRLYLEEDDTTSAEAFLNRI--K 173
Query: 62 FFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAI-LTTPCIQSDPVQRHAVLQN 120
+ +D ELKL + + +L + Y A+ L +SD +Q L
Sbjct: 174 NLPSKIED-HELKLHFRLSQARIQDARRRFLDASQEYFAVSLAAGVDESDRLQ---ALAA 229
Query: 121 VVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 180
+ +LAP ++S + +D + + G+L+ L+ + + + L
Sbjct: 230 AIRCAVLAPAGPQRSRTLATLYKDDRATSVEEF-GILEKMFLDRLLTPEEV-SAFAQRLA 287
Query: 181 KTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPI-------EE 233
+ T +G +L VVEHN+ +K Y I + +LGL E+
Sbjct: 288 PHQL--AQTADGTT---VLDKAVVEHNLVAASKLYENIKTDALGAILGLQASGDLTAGEK 342
Query: 234 TEEFLSSMVVSKTITAKIDRPAGIINFARNKDP-GEILNEWSASLNELMKLVNNTTHLIN 292
E + + MV ++ ID+ GII F N G + +W A + L + V I
Sbjct: 343 AEAYAARMVEQGRLSGSIDQIDGIIYFESNTTATGRHIRQWDAGVQGLSEGVERVATNIA 402
Query: 293 KEQMI 297
+ ++
Sbjct: 403 EGHLV 407
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 303 303 0.00097 115 3 11 22 0.39 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 37
No. of states in DFA: 605 (64 KB)
Total size of DFA: 218 KB (2121 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.15u 0.13s 27.28t Elapsed: 00:00:01
Total cpu time: 27.16u 0.13s 27.29t Elapsed: 00:00:01
Start: Thu Aug 15 12:12:41 2013 End: Thu Aug 15 12:12:42 2013