RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4458
(303 letters)
>gnl|CDD|227403 COG5071, RPN5, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 439
Score = 250 bits (640), Expect = 1e-80
Identities = 132/297 (44%), Positives = 194/297 (65%), Gaps = 3/297 (1%)
Query: 2 KEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 61
KE++GD+ A +I+ VETYGS + EKV ILEQ+RL L + DY +KKIN K
Sbjct: 141 KEEQGDIKSAQDILCNEPVETYGSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKKINKK 200
Query: 62 FFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPVQRHAVLQNV 121
FF EK+DVQ LKLKYY L + + H+ +YL CK+YRA+ T +Q DP + VL NV
Sbjct: 201 FF--EKEDVQSLKLKYYELKVRIGLHDRAYLDVCKYYRAVYDTAVVQEDPAKWKEVLSNV 258
Query: 122 VLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFK 181
V + +L PYDNEQ+DL H++ D LN +PL + L++ F EL++W + ++Y L +
Sbjct: 259 VCFALLTPYDNEQADLLHKINADHKLNSLPLLQQLVKCFIVNELMRWPKVAEIYGSAL-R 317
Query: 182 TSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSM 241
++VF + E+G+K + L+ RV+EHNIRV+A YY+RI R+ LL + ETE+F+S +
Sbjct: 318 SNVFAFNDEKGEKRWSDLRKRVIEHNIRVIANYYSRIHCSRLGVLLDMSPSETEQFISDL 377
Query: 242 VVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIH 298
V AKI+RPA II+F ++++ E LNEW +++ EL+ + HLI KE+M++
Sbjct: 378 VNKGHFYAKINRPAQIISFEKSQNVQEQLNEWGSNVTELLGKLEKVRHLIIKEEMMN 434
>gnl|CDD|216479 pfam01399, PCI, PCI domain. This domain has also been called the
PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length = 100
Score = 69.2 bits (170), Expect = 5e-15
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 8/108 (7%)
Query: 153 YKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMA 212
Y+ LL+ F + +L + + E+EL + + + L+ ++ E N+R +A
Sbjct: 1 YRDLLRAFYSGDLSDFEEILADNEDELLDDGLA--------ELLEDLRRKIRELNLRRLA 52
Query: 213 KYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINF 260
K Y+ I+L + LLGL ++E E+ LS ++ I KID+ GI+ F
Sbjct: 53 KPYSSISLSDLAKLLGLSVDEVEKILSKLIRDGRIRGKIDQVNGIVVF 100
>gnl|CDD|214803 smart00753, PAM, PCI/PINT associated module.
Length = 88
Score = 65.7 bits (161), Expect = 6e-14
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 199 LKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGII 258
L+ ++ N+ +++ Y+ I+L + LLGL + E E+ +S + I+AKID+ GI+
Sbjct: 6 LQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIV 65
Query: 259 NFARNKDP-GEILNEWSASLNEL 280
F E L +++ +L +L
Sbjct: 66 EFEEVDPRRSEPLAQFAETLKKL 88
>gnl|CDD|214509 smart00088, PINT, motif in proteasome subunits, Int-6, Nip-1 and
TRIP-15. Also called the PCI (Proteasome, COP9,
Initiation factor 3) domain. Unknown function.
Length = 88
Score = 65.7 bits (161), Expect = 6e-14
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 199 LKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGII 258
L+ ++ N+ +++ Y+ I+L + LLGL + E E+ +S + I+AKID+ GI+
Sbjct: 6 LQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIV 65
Query: 259 NFARNKDP-GEILNEWSASLNEL 280
F E L +++ +L +L
Sbjct: 66 EFEEVDPRRSEPLAQFAETLKKL 88
>gnl|CDD|143402 cd07083, ALDH_P5CDH, ALDH subfamily NAD+-dependent
delta(1)-pyrroline-5-carboxylate dehydrogenase-like.
ALDH subfamily of the NAD+-dependent,
delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH,
EC=1.5.1.12). The proline catabolic enzymes, proline
dehydrogenase and P5CDH catalyze the two-step oxidation
of proline to glutamate. P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). These enzymes play important roles
in cellular redox control, superoxide generation, and
apoptosis. In certain prokaryotes such as Escherichia
coli, PutA is also a transcriptional repressor of the
proline utilization genes. Monofunctional enzyme
sequences such as those seen in the Bacillus RocA P5CDH
are also present in this subfamily as well as the human
ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Length = 500
Score = 31.8 bits (72), Expect = 0.40
Identities = 22/106 (20%), Positives = 31/106 (29%), Gaps = 18/106 (16%)
Query: 183 SVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMV 242
+ + E FK K E R+ L + DLL E +
Sbjct: 55 AEAEAALEAAWAAFKTWKDWPQEDRARL---------LLKAADLLRRRRRE-LIATLTYE 104
Query: 243 VSKTITAKIDRPAGIINFARN--------KDPGEILNEWSASLNEL 280
V K ID A I+F R + P + + NE
Sbjct: 105 VGKNWVEAIDDVAEAIDFIRYYARAALRLRYPAVEVVPYPGEDNES 150
>gnl|CDD|227488 COG5159, RPN6, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 421
Score = 29.1 bits (65), Expect = 2.7
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Query: 150 IPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIR 209
I + + F N L +S Y +EL + S + L ++E N+
Sbjct: 283 IRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSFIRSH-------LQYLYDVLLEKNLV 335
Query: 210 VMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 256
+ + ++ + + + D++GL + E LS M++ K +D+ G
Sbjct: 336 KIIEPFSVVEISHIADVIGLDTNQVEGKLSQMILDKIFYGTLDQGDG 382
>gnl|CDD|182614 PRK10645, PRK10645, divalent-cation tolerance protein CutA;
Provisional.
Length = 112
Score = 27.8 bits (62), Expect = 3.3
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 120 NVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSG-LRQLYE-E 177
+ V+ L AP + DL +VL +KL + L G L W G L Q YE +
Sbjct: 10 DAVVVLCTAPDEATAQDLAAKVLAEKLAACVTLLPGATS------LYYWEGKLEQEYEVQ 63
Query: 178 ELFKTSVFNQS 188
L KT+V +Q
Sbjct: 64 MLLKTTVSHQQ 74
>gnl|CDD|235029 PRK02308, uvsE, putative UV damage endonuclease; Provisional.
Length = 303
Score = 28.8 bits (65), Expect = 3.6
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 21/76 (27%)
Query: 138 THRVLEDKLLNEIPLYK---GLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQK 194
R+L+ + + I L++ L+ T+PEL W + EE
Sbjct: 50 LLRILKYNIAHGIGLFRLSSSLIPLATHPELEGWDYIEPFKEE----------------- 92
Query: 195 CFKMLKHRVVEHNIRV 210
+ + + EHNIR+
Sbjct: 93 -LREIGEFIKEHNIRL 107
>gnl|CDD|188649 cd09817, linoleate_diol_synthase_like, Linoleate (8R)-dioxygenase
and related enzymes. These fungal enzymes, related to
animal heme peroxidases, catalyze the oxygenation of
linoleate and similar targets. Linoleate
(8R)-dioxygenase, also called linoleate:oxygen
7S,8S-oxidoreductase, generates
(9Z,12Z)-(7S,8S)-dihydroxyoctadeca-9,12-dienoate as a
product. Other members are 5,8-linoleate dioxygenase
(LDS, ppoA) and linoleate 10R-dioxygenase (ppoC),
involved in the biosynthesis of oxylipins.
Length = 550
Score = 28.8 bits (65), Expect = 3.8
Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 33/145 (22%)
Query: 177 EELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRIT---LQRMCDLLGLPIEE 233
E+LF+ S+F K ++ ++ + ++ I QR GL
Sbjct: 292 EDLFE-SLFGG---------KSPDEVTLKEFMQALGRFEALIPKDPSQR--TFGGLKRGP 339
Query: 234 TEEFLSSMVVSKTITAKIDRPAGIINFARNKDPG-----EILN-----EWS-ASLNELMK 282
F +V + + I+ PAG F P EIL EW+ A+LNE K
Sbjct: 340 DGRFRDEDLV-RILKDSIEDPAG--AFGARNVPASLKVIEILGILQAREWNVATLNEFRK 396
Query: 283 LVNNTTHL----INKEQMIHQRVAA 303
+ IN + + + +
Sbjct: 397 FFGLKPYETFEDINSDPEVAEALEL 421
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid
aminotransferase/4-amino-4-deoxychorismate lyase [Amino
acid transport and metabolism / Coenzyme metabolism].
Length = 284
Score = 27.7 bits (62), Expect = 6.9
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 173 QLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIE 232
+L EE K SV ++ G F+ L R + + ++ R L+R LGLP
Sbjct: 9 ELVPEEDAKLSVLDRGLHYGDGVFETL--RAYNGKLFRLDEHLAR--LKRSAKRLGLPRP 64
Query: 233 ETEEFL 238
E+EE +
Sbjct: 65 ESEEEI 70
>gnl|CDD|107265 cd06270, PBP1_GalS_like, Ligand binding domain of DNA transcription
iso-repressor GalS, which is one of two regulatory
proteins involved in galactose transport and metabolism.
Ligand binding domain of DNA transcription
iso-repressor GalS, which is one of two regulatory
proteins involved in galactose transport and metabolism.
Transcription of the galactose regulon genes is
regulated by Gal iso-repressor (GalS) and Gal repressor
(GalR) in different ways, but both repressors recognize
the same DNA binding site in the absence of D-galactose.
GalS is a dimeric protein like GalR,and its major role
is in regulating expression of the high-affinity
galactose transporter encoded by the mgl operon, whereas
GalR is the exclusive regulator of galactose permease,
the low-affinity galactose transporter. GalS and GalR
are members of the LacI-GalR family of transcription
regulators and both contain the type I periplasmic
binding protein-like fold. Hence, they are homologous to
the periplasmic sugar binding of ABC-type transport
systems.
Length = 268
Score = 27.5 bits (62), Expect = 8.4
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 82 IELDQHEGSYLATCKH-----YR--AILTTPCIQSDPVQRHA 116
I LD +G YLAT +H +R A +T P + D R
Sbjct: 96 IWLDNEQGGYLAT-EHLIELGHRKIACITGPLTKEDARLRLQ 136
>gnl|CDD|213673 TIGR02009, PGMB-YQAB-SF, beta-phosphoglucomutase family
hydrolase. This subfamily model groups together three
clades: the characterized beta-phosphoglucomutases
(including those from E.coli, B.subtilus and L.lactis,
TIGR01990), a clade of putative bPGM's from
mycobacteria and a clade including the uncharacterized
E.coli and H.influenzae yqaB genes which may prove to
be beta-mutases of a related 1-phosphosugar. All of
these are members of the larger Haloacid dehalogenase
(HAD) subfamily IA and include the "variant 3" glu-asp
version of the third conserved HAD domain (TIGR01509).
Length = 185
Score = 26.9 bits (60), Expect = 9.9
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 52 QIISKKINTKFFDDEKDDVQELKLKYYRLMIELD 85
+ I K +E + E K + YR ++ L
Sbjct: 52 RAILKLRGDGLSLEEIHQLAERKNELYRELLRLT 85
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.381
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,329,884
Number of extensions: 1477362
Number of successful extensions: 1364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1361
Number of HSP's successfully gapped: 29
Length of query: 303
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 207
Effective length of database: 6,679,618
Effective search space: 1382680926
Effective search space used: 1382680926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)