RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4458
         (303 letters)



>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 84

 Score = 88.7 bits (220), Expect = 4e-23
 Identities = 20/68 (29%), Positives = 35/68 (51%)

Query: 198 MLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257
           +L   V+EHN+   +K Y  IT + +  LL +P  + E+  S M+    +   ID+  GI
Sbjct: 11  ILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGI 70

Query: 258 INFARNKD 265
           ++F   + 
Sbjct: 71  VHFETREA 78


>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 190

 Score = 29.7 bits (66), Expect = 0.31
 Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 3/118 (2%)

Query: 7   DVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDE 66
           D+T    +I+ L +  Y      +  T+ + + +LC    +  + Q ++ +         
Sbjct: 35  DITR--YLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYT 92

Query: 67  KDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCI-QSDPVQRHAVLQNVVL 123
             D + +K+   R        +   +       A L    I  +D   R    +++VL
Sbjct: 93  LPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVL 150


>d3c7ba2 d.58.36.2 (A:1-166) Dissimilatory sulfite reductase subunit
           alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 166

 Score = 25.9 bits (57), Expect = 5.3
 Identities = 6/24 (25%), Positives = 13/24 (54%), Gaps = 3/24 (12%)

Query: 206 HNIRV---MAKYYTRITLQRMCDL 226
           H +R+      +Y+   L+ +CD+
Sbjct: 95  HTMRINQPSGWFYSTKALRGLCDV 118


>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus
           subtilis [TaxId: 1423]}
          Length = 140

 Score = 25.5 bits (55), Expect = 6.5
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 10/87 (11%)

Query: 198 MLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 257
           +L      +         ++   + +     +P+   +E L++M   K +       A +
Sbjct: 59  VLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLTTMAAEKML-----IAADV 113

Query: 258 INFARNKD-----PGEILNEWSASLNE 279
               R K         IL  +  SLNE
Sbjct: 114 SRQKRKKVIDKMAAVMILQGYLDSLNE 140


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,101,964
Number of extensions: 51392
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 13
Length of query: 303
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,240,546
Effective search space: 270439028
Effective search space used: 270439028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)