BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4459
         (400 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1RLZ|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its High Ionic
           Strength, Low Ph Crystal Form
 pdb|1ROZ|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
           Strength, High Ph Crystal Form
 pdb|1ROZ|B Chain B, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
           Strength, High Ph Crystal Form
 pdb|1RQD|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
           Strength, High Ph Crystal Form With The Inhibitor Gc7
           Bound In The Active Site
 pdb|1RQD|B Chain B, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
           Strength, High Ph Crystal Form With The Inhibitor Gc7
           Bound In The Active Site
          Length = 369

 Score =  282 bits (722), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 130/207 (62%), Positives = 164/207 (79%), Gaps = 14/207 (6%)

Query: 27  NCTIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGGVEEDLIKCLAPSYVGDFQLDG 86
           +CTIFLGYTSN++SSG+RETI++LVQH +VD +VTTAGGVEEDLIKCLAP+Y+G+F L G
Sbjct: 96  SCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRG 155

Query: 87  KTLRDEGINRIDYGSEHGKKGSHVSKVHAVPNDNYCAFENWLMPILDTMLREQKETGTVW 146
           K LR+ GINRI         G+ +     VPN+NYC FE+WLMPILD M+ EQ   G  W
Sbjct: 156 KELRENGINRI---------GNLL-----VPNENYCKFEDWLMPILDQMVMEQNTEGVKW 201

Query: 147 TPSRIISRLGMEINHEDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNPGLICDILQ 206
           TPS++I+RLG EIN+ +S+ YWA  NHIP+FSPALTDGSLGDM++FHS++NPGL+ DI++
Sbjct: 202 TPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLVLDIVE 261

Query: 207 DLRRLNTMAVKAVNTGMIILGGAEINH 233
           DLR +NT A+ A  TGMIILGG  + H
Sbjct: 262 DLRLINTQAIFAKCTGMIILGGGVVKH 288



 Score =  214 bits (544), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 100/150 (66%), Positives = 121/150 (80%)

Query: 206 QDLRRLNTMAVKAVNTGMIILGGAEINHEDSICYWAAHNHIPIFSPALTDGSLGDMMYFH 265
           Q +   NT  VK   + MI   G EIN+ +S+ YWA  NHIP+FSPALTDGSLGDM++FH
Sbjct: 189 QMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDMIFFH 248

Query: 266 SFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGGVIKHHICNANLMRNGADYAVFINT 325
           S++NPGL+ DI++DLR +NT A+ A  TGMIILGGGV+KHHI NANLMRNGADYAV+INT
Sbjct: 249 SYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGADYAVYINT 308

Query: 326 GVEYDGSDSGARPDEAKSWGKIKREARPVK 355
             E+DGSDSGARPDEA SWGKI+ +A+PVK
Sbjct: 309 AQEFDGSDSGARPDEAVSWGKIRVDAQPVK 338


>pdb|1DHS|A Chain A, Crystal Structure Of The Nad Complex Of Human
           Deoxyhypusine Synthase
          Length = 361

 Score =  282 bits (721), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 130/207 (62%), Positives = 164/207 (79%), Gaps = 14/207 (6%)

Query: 27  NCTIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGGVEEDLIKCLAPSYVGDFQLDG 86
           +CTIFLGYTSN++SSG+RETI++LVQH +VD +VTTAGGVEEDLIKCLAP+Y+G+F L G
Sbjct: 88  SCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRG 147

Query: 87  KTLRDEGINRIDYGSEHGKKGSHVSKVHAVPNDNYCAFENWLMPILDTMLREQKETGTVW 146
           K LR+ GINRI         G+ +     VPN+NYC FE+WLMPILD M+ EQ   G  W
Sbjct: 148 KELRENGINRI---------GNLL-----VPNENYCKFEDWLMPILDQMVMEQNTEGVKW 193

Query: 147 TPSRIISRLGMEINHEDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNPGLICDILQ 206
           TPS++I+RLG EIN+ +S+ YWA  NHIP+FSPALTDGSLGDM++FHS++NPGL+ DI++
Sbjct: 194 TPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLVLDIVE 253

Query: 207 DLRRLNTMAVKAVNTGMIILGGAEINH 233
           DLR +NT A+ A  TGMIILGG  + H
Sbjct: 254 DLRLINTQAIFAKCTGMIILGGGVVKH 280



 Score =  213 bits (543), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 100/150 (66%), Positives = 121/150 (80%)

Query: 206 QDLRRLNTMAVKAVNTGMIILGGAEINHEDSICYWAAHNHIPIFSPALTDGSLGDMMYFH 265
           Q +   NT  VK   + MI   G EIN+ +S+ YWA  NHIP+FSPALTDGSLGDM++FH
Sbjct: 181 QMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDMIFFH 240

Query: 266 SFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGGVIKHHICNANLMRNGADYAVFINT 325
           S++NPGL+ DI++DLR +NT A+ A  TGMIILGGGV+KHHI NANLMRNGADYAV+INT
Sbjct: 241 SYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGADYAVYINT 300

Query: 326 GVEYDGSDSGARPDEAKSWGKIKREARPVK 355
             E+DGSDSGARPDEA SWGKI+ +A+PVK
Sbjct: 301 AQEFDGSDSGARPDEAVSWGKIRVDAQPVK 330


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.138    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,259,813
Number of Sequences: 62578
Number of extensions: 588025
Number of successful extensions: 1182
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1174
Number of HSP's gapped (non-prelim): 7
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)