Query psy4459
Match_columns 400
No_of_seqs 149 out of 527
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 17:36:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2924|consensus 100.0 4E-106 9E-111 775.4 16.2 292 2-379 71-362 (366)
2 PRK03971 putative deoxyhypusin 100.0 2.6E-96 6E-101 727.3 22.4 269 24-372 63-333 (334)
3 TIGR00321 dhys deoxyhypusine s 100.0 1.2E-95 3E-100 714.5 21.7 264 18-372 36-300 (301)
4 PRK01221 putative deoxyhypusin 100.0 6.1E-95 1.3E-99 712.4 21.9 262 20-372 48-311 (312)
5 PRK02301 putative deoxyhypusin 100.0 5.4E-95 1.2E-99 713.5 21.1 263 19-373 49-313 (316)
6 COG1899 DYS1 Deoxyhypusine syn 100.0 3.5E-94 7.7E-99 701.9 21.2 264 20-374 48-314 (318)
7 PRK00805 putative deoxyhypusin 100.0 1.5E-93 3.3E-98 706.4 19.4 270 18-376 37-314 (329)
8 PF01916 DS: Deoxyhypusine syn 100.0 1.9E-93 4.2E-98 698.9 15.8 267 20-372 26-298 (299)
9 PRK02492 deoxyhypusine synthas 100.0 2E-90 4.3E-95 688.2 20.2 284 19-392 50-344 (347)
10 PRK00770 deoxyhypusine synthas 100.0 1.4E-87 3.1E-92 675.3 19.5 276 25-386 49-340 (384)
11 KOG2924|consensus 99.8 1.7E-20 3.6E-25 182.7 4.4 101 188-313 243-346 (366)
12 PRK00770 deoxyhypusine synthas 99.7 3E-19 6.4E-24 181.1 2.5 121 161-306 176-311 (384)
13 COG1899 DYS1 Deoxyhypusine syn 99.6 1E-15 2.2E-20 151.2 2.2 101 175-299 186-290 (318)
14 PRK01221 putative deoxyhypusin 99.5 1.6E-15 3.5E-20 150.6 2.4 102 175-300 186-290 (312)
15 TIGR00321 dhys deoxyhypusine s 99.5 6.1E-15 1.3E-19 145.8 1.3 101 175-300 176-279 (301)
16 PRK02301 putative deoxyhypusin 99.5 1E-14 2.3E-19 145.0 1.3 100 175-299 187-290 (316)
17 PRK03971 putative deoxyhypusin 99.5 1E-14 2.3E-19 145.9 1.2 117 159-299 190-311 (334)
18 PRK02492 deoxyhypusine synthas 99.4 2.2E-14 4.7E-19 144.3 2.0 125 146-297 166-302 (347)
19 PRK00805 putative deoxyhypusin 99.4 2.8E-14 6.1E-19 142.6 2.5 113 164-300 167-289 (329)
20 PF01916 DS: Deoxyhypusine syn 99.2 1.7E-12 3.7E-17 128.5 -1.5 61 175-235 171-233 (299)
21 TIGR00300 conserved hypothetic 95.7 0.1 2.2E-06 54.4 11.0 138 24-215 198-337 (407)
22 COG1915 Uncharacterized conser 88.7 0.98 2.1E-05 46.4 6.2 52 24-75 197-248 (415)
23 COG0521 MoaB Molybdopterin bio 58.0 8.8 0.00019 36.1 2.8 22 43-65 56-77 (169)
24 COG0337 AroB 3-dehydroquinate 56.7 8.7 0.00019 40.0 2.8 63 202-264 77-144 (360)
25 PF04422 FrhB_FdhB_N: Coenzyme 49.8 19 0.00041 29.4 3.1 35 45-79 25-72 (82)
26 TIGR01747 diampropi_NH3ly diam 41.9 21 0.00046 36.8 2.9 47 27-73 316-372 (376)
27 PRK07313 phosphopantothenoylcy 41.8 24 0.00051 32.9 2.9 37 29-65 3-40 (182)
28 PF04210 MtrG: Tetrahydrometha 41.6 29 0.00062 28.5 3.0 49 113-170 6-54 (70)
29 PHA02575 1 deoxynucleoside mon 41.3 1.7E+02 0.0036 28.9 8.7 110 32-159 3-131 (227)
30 TIGR00421 ubiX_pad polyprenyl 40.4 26 0.00056 32.7 2.9 37 29-65 1-38 (181)
31 COG4064 MtrG Tetrahydromethano 40.1 41 0.00088 27.8 3.6 49 113-170 9-57 (75)
32 TIGR02113 coaC_strep phosphopa 38.5 26 0.00056 32.6 2.6 37 29-65 2-39 (177)
33 PRK09417 mogA molybdenum cofac 37.7 31 0.00066 32.8 3.0 24 42-65 53-76 (193)
34 TIGR00589 ogt O-6-methylguanin 37.6 88 0.0019 25.7 5.3 58 128-188 4-65 (80)
35 PRK05920 aromatic acid decarbo 37.1 35 0.00075 32.8 3.3 38 27-64 3-41 (204)
36 cd00758 MoCF_BD MoCF_BD: molyb 37.0 32 0.00069 29.9 2.8 24 40-65 45-68 (133)
37 COG0303 MoeA Molybdopterin bio 34.9 70 0.0015 33.8 5.4 95 23-137 212-321 (404)
38 PF00994 MoCF_biosynth: Probab 34.7 37 0.00081 29.6 2.9 24 40-65 43-66 (144)
39 PF01761 DHQ_synthase: 3-dehyd 34.5 12 0.00026 37.0 -0.3 43 219-261 29-76 (260)
40 TIGR01001 metA homoserine O-su 33.5 44 0.00095 34.2 3.5 34 35-68 77-112 (300)
41 COG0350 Ada Methylated DNA-pro 33.1 35 0.00077 31.6 2.6 51 126-179 88-138 (168)
42 smart00852 MoCF_biosynth Proba 32.6 41 0.00089 29.0 2.8 24 40-65 44-67 (135)
43 COG5000 NtrY Signal transducti 32.6 1.4E+02 0.003 33.9 7.3 57 130-214 488-546 (712)
44 TIGR02667 moaB_proteo molybden 31.7 47 0.001 30.3 3.1 25 41-65 49-73 (163)
45 PF00867 XPG_I: XPG I-region; 31.6 38 0.00082 28.0 2.3 17 46-62 17-33 (94)
46 PRK08305 spoVFB dipicolinate s 30.6 46 0.001 31.8 3.0 40 26-65 4-45 (196)
47 PRK13951 bifunctional shikimat 30.4 36 0.00078 36.5 2.5 41 220-260 238-283 (488)
48 TIGR00036 dapB dihydrodipicoli 29.5 39 0.00084 33.1 2.3 26 238-266 111-137 (266)
49 COG0703 AroK Shikimate kinase 29.3 64 0.0014 30.4 3.6 31 45-77 63-95 (172)
50 KOG3349|consensus 28.8 40 0.00086 31.8 2.1 35 57-98 5-40 (170)
51 cd01421 IMPCH Inosine monophos 28.8 1.8E+02 0.0039 27.9 6.5 32 29-65 2-33 (187)
52 PF14367 DUF4411: Domain of un 28.7 2.4E+02 0.0052 25.6 7.2 60 113-183 13-72 (162)
53 PRK06029 3-octaprenyl-4-hydrox 28.1 44 0.00095 31.5 2.3 37 29-65 3-41 (185)
54 KOG4062|consensus 27.4 44 0.00096 31.7 2.2 53 124-179 87-139 (178)
55 PRK01026 tetrahydromethanopter 26.9 59 0.0013 27.2 2.6 49 113-170 9-57 (77)
56 TIGR01149 mtrG N5-methyltetrah 25.2 68 0.0015 26.4 2.6 49 113-170 6-54 (70)
57 TIGR00521 coaBC_dfp phosphopan 23.9 71 0.0015 33.4 3.2 48 27-74 3-53 (390)
58 TIGR02700 flavo_MJ0208 archaeo 21.2 84 0.0018 30.2 2.9 37 29-65 1-41 (234)
59 PRK02261 methylaspartate mutas 21.1 1.7E+02 0.0037 26.0 4.6 65 25-98 52-117 (137)
60 PF14370 Topo_C_assoc: C-termi 21.0 1.3E+02 0.0027 24.9 3.4 29 142-176 19-47 (71)
61 cd08198 DHQS-like2 Dehydroquin 20.9 78 0.0017 32.9 2.8 43 219-261 99-146 (369)
62 TIGR00300 conserved hypothetic 20.8 1.9E+02 0.0041 31.0 5.4 119 184-326 251-373 (407)
63 PRK14498 putative molybdopteri 20.2 2E+02 0.0043 31.6 5.7 34 41-76 240-279 (633)
64 cd00886 MogA_MoaB MogA_MoaB fa 20.1 1E+02 0.0023 27.4 3.1 25 41-65 47-71 (152)
No 1
>KOG2924|consensus
Probab=100.00 E-value=4.4e-106 Score=775.37 Aligned_cols=292 Identities=65% Similarity=1.057 Sum_probs=266.1
Q ss_pred ccccCCCCCCccCcccchhhhhccCCceEEEecccccchhhhHHHHHHHHHcCCccEEEeCCCchhHHHHHhhcCccccc
Q psy4459 2 ECRRLDLPEDKIDTYEEDLFIVRKHNCTIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGGVEEDLIKCLAPSYVGD 81 (400)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifl~~tgnm~~aGlr~~i~~Li~~~~Vd~iVtTgg~lehDi~~~~~~~y~g~ 81 (400)
..|++|+..|+...+...+..|....||||||||+|++|||+|++|++|+||++|||||||+|+||||+||||+|+|.|+
T Consensus 71 ~~rd~~~~~d~d~~~~~~~~~r~~~~ctIFlGyTSNliSSGlRetirylvqh~mVdviVttaGGvEEDlIKclaPTy~g~ 150 (366)
T KOG2924|consen 71 NWRDEPLSADDDSHEDLTFSRRPLTSCTIFLGYTSNLISSGLRETIRYLVQHNMVDVIVTTAGGVEEDLIKCLAPTYLGD 150 (366)
T ss_pred hcccCccccccccccccCcccccccceEEEEecchhhhhhhHHHHHHHHHHhcceeEEEecCCccHHHHHHHhCccceee
Confidence 56888998777445555556666788999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhHHhcCccccccCCCCCCCCCCcccceeecCccHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHhcccCC
Q psy4459 82 FQLDGKTLRDEGINRIDYGSEHGKKGSHVSKVHAVPNDNYCAFENWLMPILDTMLREQKETGTVWTPSRIISRLGMEINH 161 (400)
Q Consensus 82 ~~~dd~~L~~~ginRi~~~~~~~~~~~~~~~d~~ip~e~~~~~E~~l~~il~~~~~~q~~~~~~~t~~e~~~~lGk~i~~ 161 (400)
|.+++++||++|+|||| |++|||||||+||+|++|||++|+++|+..+..||||+||++|||+|++
T Consensus 151 F~L~G~~LR~~GlNRiG--------------NllvPndNYckfEdWl~pIld~mleeq~~~~~iwTPSk~I~rlGk~Ind 216 (366)
T KOG2924|consen 151 FSLDGKELRENGLNRIG--------------NLLVPNDNYCKFEDWLMPILDEMLEEQKTEGVIWTPSKMIARLGKEIND 216 (366)
T ss_pred eecChHHHHhhhhhhhc--------------cEecCCcchhhHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhhCC
Confidence 99999999999999999 9999999999999999999999999999989999999999999999999
Q ss_pred CccHhHhhhhcCCCccCCCccCCCccccceeecccCCCchhHHHHHHHHHhHhhhhccccceeeecCcccCCCchHhhHh
Q psy4459 162 EDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGAEINHEDSICYWA 241 (400)
Q Consensus 162 e~Sil~wAyk~~vPif~Pa~~D~s~g~~l~~~~~~~~~l~iD~~~d~~~l~~~~~~s~~~~~i~~~G~~i~~e~Sil~~A 241 (400)
++||+||||||+|||||||+|||
T Consensus 217 esSvlYWA~Kn~IPvf~PaltDG--------------------------------------------------------- 239 (366)
T KOG2924|consen 217 ESSVLYWAAKNHIPVFSPALTDG--------------------------------------------------------- 239 (366)
T ss_pred ccceeehhhhCCCceecccccCC---------------------------------------------------------
Confidence 99999998885555555555555
Q ss_pred hhCCCceecCCCCchhHhHHHHHhhhcCCcceeeHHHHHHHHHHHHhhcccceeEEecCccchhhhhhhcccccCcceEE
Q psy4459 242 AHNHIPIFSPALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGGVIKHHICNANLMRNGADYAV 321 (400)
Q Consensus 242 ~k~~vPVf~Pa~~DgsiG~~l~~~~~~~~~l~~D~~~D~~~l~~~~~~s~~~G~iilGGGv~Kh~i~~a~l~r~g~dyav 321 (400)
|+|+|||||+++.++|.+|+++|++++|.+++.|.++|+||+||||+|||||||||||||+||+|
T Consensus 240 ---------------SlGDmlyFHs~k~~~L~~DIv~Dir~iNt~av~a~~tgmIIlGgGvvKHHI~NAnLmrNGad~~V 304 (366)
T KOG2924|consen 240 ---------------SLGDMLYFHSFKNSGLVLDIVEDIRRINTEAVFANKTGMIILGGGVVKHHICNANLMRNGADYAV 304 (366)
T ss_pred ---------------cccceEEEeeccCCCeEEeHHHHHHhhhhhhhhccccceEEEcCchhhhhcchhhhhhcCcceEE
Confidence 55555555555567899999999999999999999999999999999999999999999999999
Q ss_pred EeccCCcccCCcCCCChhhhhhhcccccCCCCeEEeccceeEeecccccccCCCCCCC
Q psy4459 322 FINTGVEYDGSDSGARPDEAKSWGKIKREARPVKRNGADYAVFINTGVEYDGSDSGAR 379 (400)
Q Consensus 322 ~itta~e~dGs~SGA~p~EaisWGKik~~~~~v~V~gDaTiv~Pll~~~~~gs~sGar 379 (400)
||||+||||||+|||+|+||||||||++++++||||+|||+|||+++++.+...-.+-
T Consensus 305 yINtaqEfDGSDsGArpDEAVSWGKir~~a~~VKvy~datlvfPLlVaeTFa~~~~~~ 362 (366)
T KOG2924|consen 305 YINTAQEFDGSDSGARPDEAVSWGKIRPDAKPVKVYADATLVFPLLVAETFAKKMDAF 362 (366)
T ss_pred EecccccccCcccCCCcccccccccccCCCceEEEEeeeeehhHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999999999999999999999887765553
No 2
>PRK03971 putative deoxyhypusine synthase; Provisional
Probab=100.00 E-value=2.6e-96 Score=727.28 Aligned_cols=269 Identities=48% Similarity=0.772 Sum_probs=255.4
Q ss_pred ccCCceEEEecccccchhhhHHHHHHHHHcCCccEEEeCCCchhHHHHHhhcCcccccccCCchhHHhcCccccccCCCC
Q psy4459 24 RKHNCTIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGGVEEDLIKCLAPSYVGDFQLDGKTLRDEGINRIDYGSEH 103 (400)
Q Consensus 24 ~~~~~~ifl~~tgnm~~aGlr~~i~~Li~~~~Vd~iVtTgg~lehDi~~~~~~~y~g~~~~dd~~L~~~ginRi~~~~~~ 103 (400)
++.+|||||||||||+|||||++|++|||+|+||+|||||||||||++||+++||+|+|.+||.+||++|+||||
T Consensus 63 ~~~~~~ifL~~tg~misaGlr~~i~~Li~~~~Vd~iVtTganlehDi~~~l~~~~~G~f~~dd~~Lr~~ginRIg----- 137 (334)
T PRK03971 63 KKEEATVFLGYTSNIVSSGLREIIAYLVKEKKVDVIVTTAGGVEEDFIKCLKPFILGEWDVDGAELREKGINRIG----- 137 (334)
T ss_pred ccCCCeEEEEccccccchhHHHHHHHHHHcCCeeEEEeCCCchHHHHHHHhcccccCCCCCCHHHHHHcCCCccc-----
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccceeecCccHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHhcccCCCccHhHhhhhcCCCccCCCccC
Q psy4459 104 GKKGSHVSKVHAVPNDNYCAFENWLMPILDTMLREQKETGTVWTPSRIISRLGMEINHEDSICYWAAHNHIPIFSPALTD 183 (400)
Q Consensus 104 ~~~~~~~~~d~~ip~e~~~~~E~~l~~il~~~~~~q~~~~~~~t~~e~~~~lGk~i~~e~Sil~wAyk~~vPif~Pa~~D 183 (400)
|++||||+||+||+|++++|+++.++|++.+.+|||+||+++|||+|+++.
T Consensus 138 ---------nv~ip~e~y~~~E~~i~~il~~~~~~q~~~~~~~s~~e~i~~lGk~i~~~~-------------------- 188 (334)
T PRK03971 138 ---------NIFVPNDRYIEFEEYMYEFFEELLAKQREEGKIITASEFCYELGRFMDEKL-------------------- 188 (334)
T ss_pred ---------eeeeChHHHHHHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHhhhc--------------------
Confidence 999999999999999999999999999888889999999999999987520
Q ss_pred CCccccceeecccCCCchhHHHHHHHHHhHhhhhccccceeeecCcccCCCchHhhHhhhCCCceecCCCCchhHhHHHH
Q psy4459 184 GSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGAEINHEDSICYWAAHNHIPIFSPALTDGSLGDMMY 263 (400)
Q Consensus 184 ~s~g~~l~~~~~~~~~l~iD~~~d~~~l~~~~~~s~~~~~i~~~G~~i~~e~Sil~~A~k~~vPVf~Pa~~DgsiG~~l~ 263 (400)
.++.|+|||||||||||||||||++|||+|+++|
T Consensus 189 ----------------------------------------------~~~~e~Sil~~Ayk~~VPIf~Pa~tDgsiG~~l~ 222 (334)
T PRK03971 189 ----------------------------------------------GKEKEKSILYWAYKNNIPIFCPAITDGSIGDMLY 222 (334)
T ss_pred ----------------------------------------------cCCccchHHHHHHHcCCCEEcCCcchhhHHHHHH
Confidence 1345678888888899999999999999999999
Q ss_pred HhhhcC--CcceeeHHHHHHHHHHHHhhcccceeEEecCccchhhhhhhcccccCcceEEEeccCCcccCCcCCCChhhh
Q psy4459 264 FHSFRN--PGLICDILQDLRRLNTMAVKAVNTGMIILGGGVIKHHICNANLMRNGADYAVFINTGVEYDGSDSGARPDEA 341 (400)
Q Consensus 264 ~~~~~~--~~l~~D~~~D~~~l~~~~~~s~~~G~iilGGGv~Kh~i~~a~l~r~g~dyav~itta~e~dGs~SGA~p~Ea 341 (400)
+|++++ +++.+|+++|+++|++++++|+++|+|||||||||||+||+||+|+|+||||||||++|+|||||||||+||
T Consensus 223 ~~~~~~~~~~l~~D~~~D~~~l~~i~~~s~k~G~iilGGGvpKh~~~~~~l~~~G~dYaVqItta~~~dGslSGA~p~EA 302 (334)
T PRK03971 223 FFKKEGKDSELGIDIANDIVKLNDLAITAKETACIVLGGSLPKHSIINANLFRGGTDYAIYITTAMPWDGSLSGAPPEEG 302 (334)
T ss_pred HHHhhcCCCceEEeHHHHHHHHHHHHhccCceEEEEECCchHHHHHHHHhcccCCCCEEEEEeCCCCCCCcccCCChhhh
Confidence 999843 469999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCCCeEEeccceeEeeccccccc
Q psy4459 342 KSWGKIKREARPVKRNGADYAVFINTGVEYD 372 (400)
Q Consensus 342 isWGKik~~~~~v~V~gDaTiv~Pll~~~~~ 372 (400)
||||||++++++|+|||||||+||+++++++
T Consensus 303 vSWGKi~~~a~~v~V~~DATIv~PLl~a~~~ 333 (334)
T PRK03971 303 VSWGKIKAKADYVEIWADATLVFPLLVYGVF 333 (334)
T ss_pred hccCCccCCCCeEEEEEehhhHHHHHHHHhc
Confidence 9999999999999999999999999998764
No 3
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=100.00 E-value=1.2e-95 Score=714.51 Aligned_cols=264 Identities=47% Similarity=0.723 Sum_probs=248.8
Q ss_pred chhhhhccCCceEEEecccccchhhhHHHHHHHHHcCCccEEEeCCCchhHHHHHhhcCcccccccCCchhHHhcCcccc
Q psy4459 18 EDLFIVRKHNCTIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGGVEEDLIKCLAPSYVGDFQLDGKTLRDEGINRI 97 (400)
Q Consensus 18 ~~~~~~~~~~~~ifl~~tgnm~~aGlr~~i~~Li~~~~Vd~iVtTgg~lehDi~~~~~~~y~g~~~~dd~~L~~~ginRi 97 (400)
....|.++.+|+|||||||||+|||||++|++|||+|+||+|||||||||||++||+|++|.|+|++||.+||++|+|||
T Consensus 36 i~~~m~~~~~~~ifLt~tg~mvsaGlr~ii~~Li~~g~Vd~ivtTganl~hD~~~~~g~~~~g~f~~dd~~Lr~~ginRI 115 (301)
T TIGR00321 36 IWKEMCFDEEITIFMGYAGNLVPSGMREIIAYLIQHGMIDALVTTGANLEHDLIEALGPTHLGDFAVDDKKLREEGINRI 115 (301)
T ss_pred HHHHHHhCCCCeEEEEeccccchhhHHHHHHHHHHcCCeeEEEeCCCchHHHHHHHcCcccccCCCCChHHHHHcCCCcc
Confidence 34567778899999999999999999999999999999999999999999999999998666999999999999999999
Q ss_pred ccCCCCCCCCCCcccceeecCccHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHhcccCC-CccHhHhhhhcCCCc
Q psy4459 98 DYGSEHGKKGSHVSKVHAVPNDNYCAFENWLMPILDTMLREQKETGTVWTPSRIISRLGMEINH-EDSICYWAAHNHIPI 176 (400)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~ip~e~~~~~E~~l~~il~~~~~~q~~~~~~~t~~e~~~~lGk~i~~-e~Sil~wAyk~~vPi 176 (400)
| |++||||+||+||+|++++|+++.++|+ +|||+||+++|||+|++ ++||+|||||
T Consensus 116 ~--------------dv~ip~e~y~~~E~~i~~i~~~~~~~~~----~~s~~e~i~~lGk~i~~~e~Sil~~Ayk----- 172 (301)
T TIGR00321 116 G--------------DVFVPNENFEVFEEWLVEIFSEMLGEQP----IITPSEFIDEIGKRINDKRSSIRYAAYK----- 172 (301)
T ss_pred c--------------eecCCHHHHHHHHHHHHHHHHHHHhcCC----CcCHHHHHHHHHhhcCCccchHHHHHHH-----
Confidence 9 9999999999999999999999977654 59999999999999986 6666666655
Q ss_pred cCCCccCCCccccceeecccCCCchhHHHHHHHHHhHhhhhccccceeeecCcccCCCchHhhHhhhCCCceecCCCCch
Q psy4459 177 FSPALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGAEINHEDSICYWAAHNHIPIFSPALTDG 256 (400)
Q Consensus 177 f~Pa~~D~s~g~~l~~~~~~~~~l~iD~~~d~~~l~~~~~~s~~~~~i~~~G~~i~~e~Sil~~A~k~~vPVf~Pa~~Dg 256 (400)
|+|||||||++||
T Consensus 173 -------------------------------------------------------------------~~VPIf~Pa~~Ds 185 (301)
T TIGR00321 173 -------------------------------------------------------------------RKIPIFCPALTDS 185 (301)
T ss_pred -------------------------------------------------------------------cCCCEECCCchHh
Confidence 8999999999999
Q ss_pred hHhHHHHHhhhcCCcceeeHHHHHHHHHHHHhhcccceeEEecCccchhhhhhhcccccCcceEEEeccCCcccCCcCCC
Q psy4459 257 SLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGGVIKHHICNANLMRNGADYAVFINTGVEYDGSDSGA 336 (400)
Q Consensus 257 siG~~l~~~~~~~~~l~~D~~~D~~~l~~~~~~s~~~G~iilGGGv~Kh~i~~a~l~r~g~dyav~itta~e~dGs~SGA 336 (400)
|+|+++|+|++++ +|.+|+++|+++|++++++|+++|+|+|||||||||+||++|+|+|+||||||||++|+|||||||
T Consensus 186 siG~~l~~~~~~~-~l~iD~v~D~~~l~~i~~~~~~~G~iilGGGvpKh~~~~~~l~~~G~dYaVqItta~~~dGslSGA 264 (301)
T TIGR00321 186 SIGLMLFFYTKKN-SLRIDIVRDIRKLNDIVFNSERTGVIILGGGLPKHFILNACLLREGADYAVQITTDQPQDGSLSGA 264 (301)
T ss_pred HHHHHHHHHHhcC-CeeeehHhhHHHHHHHHHccCceEEEEECCchhhhHHHHhhhccCCCCEEEEEeCCCCCCCcccCC
Confidence 9999999999975 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhcccccCCCCeEEeccceeEeeccccccc
Q psy4459 337 RPDEAKSWGKIKREARPVKRNGADYAVFINTGVEYD 372 (400)
Q Consensus 337 ~p~EaisWGKik~~~~~v~V~gDaTiv~Pll~~~~~ 372 (400)
||+||||||||++++++|+|||||||+||+++++++
T Consensus 265 ~~~EAvSWGKi~~~a~~v~V~~DATI~~PLl~a~~~ 300 (301)
T TIGR00321 265 PLEEAVSWGKIKAKAKSVTVFGDATIALPVLVAGLL 300 (301)
T ss_pred ChhhhhccCCccCCCceEEEEEehhhHHHHHHHHhh
Confidence 999999999999999999999999999999998764
No 4
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=100.00 E-value=6.1e-95 Score=712.37 Aligned_cols=262 Identities=33% Similarity=0.596 Sum_probs=247.3
Q ss_pred hhhhccCCceEEEecccccchhhhHHHHHHHHHcCCccEEEeCCCchhHHHHHhhcC-cccccccCCchhHHhcCccccc
Q psy4459 20 LFIVRKHNCTIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGGVEEDLIKCLAP-SYVGDFQLDGKTLRDEGINRID 98 (400)
Q Consensus 20 ~~~~~~~~~~ifl~~tgnm~~aGlr~~i~~Li~~~~Vd~iVtTgg~lehDi~~~~~~-~y~g~~~~dd~~L~~~ginRi~ 98 (400)
..|.++. +||||||||||+|||||++|++|||+|+||+|||||||||||++||+++ ||+|+|++||.+||++|+||||
T Consensus 48 ~~ml~d~-~~ifL~~tg~mvs~Glr~ii~~Li~~~~VD~iVtTgani~hD~~~~lg~~~y~G~~~~dd~~Lr~~GinRIg 126 (312)
T PRK01221 48 KEMISDA-DLRFLSFTANLVSTGLRGLIADLIKRGLFNVVITTCGTLDHDIARSFGGVYYKGSFDIDDAMLKDLGIHRLG 126 (312)
T ss_pred HHHHcCC-CeEEEEecchhHHHHHHHHHHHHHHcCCeeEEEeCCCchHHHHHHHcCCCeEecCCCCChHHHHHcCCCcce
Confidence 4455544 4999999999999999999999999999999999999999999999987 9999999999999999999999
Q ss_pred cCCCCCCCCCCcccceeecCccHHH-HHHHHHHHHHHHHHHhhhcCCccchHHHHHHHhcccCCCccHhHhhhhcCCCcc
Q psy4459 99 YGSEHGKKGSHVSKVHAVPNDNYCA-FENWLMPILDTMLREQKETGTVWTPSRIISRLGMEINHEDSICYWAAHNHIPIF 177 (400)
Q Consensus 99 ~~~~~~~~~~~~~~d~~ip~e~~~~-~E~~l~~il~~~~~~q~~~~~~~t~~e~~~~lGk~i~~e~Sil~wAyk~~vPif 177 (400)
|++|||||||. ||+|++++++++.++| .+|||+||+++|||+|++++||+|||||
T Consensus 127 --------------dv~ip~e~y~~~~E~~i~~il~~~~~~~----~~~s~~e~i~~lGk~i~~e~Sil~~Ay~------ 182 (312)
T PRK01221 127 --------------NVLIPVESYGPLIEKFVRKFLEELYKDK----KEWSTYELLWEFGKRINDENSILRAAYE------ 182 (312)
T ss_pred --------------eeccChHHHHHHHHHHHHHHHHHHHhcC----CCccHHHHHHHHHhhcCCcCcHHHHHHH------
Confidence 99999999955 9999999999997644 3599999999999999887777777766
Q ss_pred CCCccCCCccccceeecccCCCchhHHHHHHHHHhHhhhhccccceeeecCcccCCCchHhhHhhhCCCceecCCCCchh
Q psy4459 178 SPALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGAEINHEDSICYWAAHNHIPIFSPALTDGS 257 (400)
Q Consensus 178 ~Pa~~D~s~g~~l~~~~~~~~~l~iD~~~d~~~l~~~~~~s~~~~~i~~~G~~i~~e~Sil~~A~k~~vPVf~Pa~~Dgs 257 (400)
|+|||||||++|||
T Consensus 183 ------------------------------------------------------------------~~VPVf~Pa~~Dgs 196 (312)
T PRK01221 183 ------------------------------------------------------------------KGVPVFVPGIVDGA 196 (312)
T ss_pred ------------------------------------------------------------------cCCCEECCCccHHH
Confidence 89999999999999
Q ss_pred HhHHHHHhhhcCCcceeeHHHHHHHHHHHHhhcccceeEEecCccchhhhhhhcccccCcceEEEeccCCcccCCcCCCC
Q psy4459 258 LGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGGVIKHHICNANLMRNGADYAVFINTGVEYDGSDSGAR 337 (400)
Q Consensus 258 iG~~l~~~~~~~~~l~~D~~~D~~~l~~~~~~s~~~G~iilGGGv~Kh~i~~a~l~r~g~dyav~itta~e~dGs~SGA~ 337 (400)
+|+++|+|++++++|.+|+++|+++|++++++|+++|+|+|||||||||++||||+|+|+||||||||++|+||||||||
T Consensus 197 iG~~l~~~~~~~~~l~iD~~~D~~~l~~~~~~a~k~G~iilGGGvpKh~~~~~~~~~~G~DyaVqItta~~~dGslSGA~ 276 (312)
T PRK01221 197 FGTQLFTFSQRFGGFKINLLEDEELLSDLVFSSKKLGALIIGGGISKHHTIWWNQFKDGLDYAVYITTAVEYDGSLSGAR 276 (312)
T ss_pred HHHHHHHHhhcCCCcceeHHHHHHHHHHHHhccCceEEEEECCCcchhHHHHHHhhccCCCEEEEEeCCCCCCCcccCCC
Confidence 99999999998778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccccCCCCeEEeccceeEeeccccccc
Q psy4459 338 PDEAKSWGKIKREARPVKRNGADYAVFINTGVEYD 372 (400)
Q Consensus 338 p~EaisWGKik~~~~~v~V~gDaTiv~Pll~~~~~ 372 (400)
|+||||||||+++++.|+|||||||+||+++++++
T Consensus 277 ~~EAvSWGKv~~~a~~v~V~~DATI~~PLi~a~~l 311 (312)
T PRK01221 277 PREAISWGKIKPEAKHVTIYGDATIILPILAASLL 311 (312)
T ss_pred hhhhhccCCccCCCceEEEEEehhhHHHHHHHHHh
Confidence 99999999999999999999999999999998764
No 5
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=100.00 E-value=5.4e-95 Score=713.52 Aligned_cols=263 Identities=26% Similarity=0.439 Sum_probs=249.3
Q ss_pred hhhhhccCCceEEEecccccchhhhHHHHHHHHHcCCccEEEeCCCchhHHHHHhhc-CcccccccCCchhHHhcCcccc
Q psy4459 19 DLFIVRKHNCTIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGGVEEDLIKCLA-PSYVGDFQLDGKTLRDEGINRI 97 (400)
Q Consensus 19 ~~~~~~~~~~~ifl~~tgnm~~aGlr~~i~~Li~~~~Vd~iVtTgg~lehDi~~~~~-~~y~g~~~~dd~~L~~~ginRi 97 (400)
...|.++.+|+|||||||||+|||||++|++|||+|+||+|||||||||||++||++ +||+|+|++||.+||++|+|||
T Consensus 49 ~~~ml~~~~~~ifL~~tg~mvsaGlr~ii~~Li~~~~VD~iVtTganiehD~~~~lg~~~y~G~~~~dd~~Lr~~ginRI 128 (316)
T PRK02301 49 YEEMLADDDVTKFFGLAGAMVPAGMRGIVSDLIRDGHIDVLVTTGANLTHDVIEAIGGHHHHGTAHAHDEELRDEGIDRI 128 (316)
T ss_pred HHHHHhCCCCeEEEEcccchhHHHHHHHHHHHHHcCCeeEEEcCCCchHHHHHHHcCCCeeccCCCCCHHHHHHcCCCcc
Confidence 445667889999999999999999999999999999999999999999999999998 7999999999999999999999
Q ss_pred ccCCCCCCCCCCcccceeecCccHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHhcccCCCccHhHhhhhcCCCcc
Q psy4459 98 DYGSEHGKKGSHVSKVHAVPNDNYCAFENWLMPILDTMLREQKETGTVWTPSRIISRLGMEINHEDSICYWAAHNHIPIF 177 (400)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~ip~e~~~~~E~~l~~il~~~~~~q~~~~~~~t~~e~~~~lGk~i~~e~Sil~wAyk~~vPif 177 (400)
| |++||||+||+||+|++++|+++.++ .+|||+||+++|||+|++++||+|||||
T Consensus 129 g--------------d~~ip~e~y~~~E~~i~~il~~~~~~-----~~~s~~e~i~~lGk~i~~e~Sil~~Ay~------ 183 (316)
T PRK02301 129 Y--------------DVYLPQEHFADFEEFLQDVFPGLEEE-----GTVSIRDLLTEIGRDLDDDSGILAAAYE------ 183 (316)
T ss_pred c--------------eeCCChHHHHHHHHHHHHHHHhhhhc-----CCcCHHHHHHHHHhhccCCCcHHHHHHH------
Confidence 9 99999999999999999999999643 2599999999999999888777777766
Q ss_pred CCCccCCCccccceeecccCCCchhHHHHHHHHHhHhhhhccccceeeecCcccCCCchHhhHhhhCCCceecCCCCchh
Q psy4459 178 SPALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGAEINHEDSICYWAAHNHIPIFSPALTDGS 257 (400)
Q Consensus 178 ~Pa~~D~s~g~~l~~~~~~~~~l~iD~~~d~~~l~~~~~~s~~~~~i~~~G~~i~~e~Sil~~A~k~~vPVf~Pa~~Dgs 257 (400)
|+|||||||++|||
T Consensus 184 ------------------------------------------------------------------~~VPIf~Pa~~Dss 197 (316)
T PRK02301 184 ------------------------------------------------------------------CDVPVYCPAIQDSV 197 (316)
T ss_pred ------------------------------------------------------------------cCCCEECCCcchhH
Confidence 89999999999999
Q ss_pred HhHHHHHhhhcCCcceeeHHHHHHHHHHHHhhcccceeEEecCccchhhhhhhcccc-cCcceEEEeccCCcccCCcCCC
Q psy4459 258 LGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGGVIKHHICNANLMR-NGADYAVFINTGVEYDGSDSGA 336 (400)
Q Consensus 258 iG~~l~~~~~~~~~l~~D~~~D~~~l~~~~~~s~~~G~iilGGGv~Kh~i~~a~l~r-~g~dyav~itta~e~dGs~SGA 336 (400)
+|+++|+|++++ ++.+|+++|+++|++++++|+++|+|+|||||||||+||++|++ +|+||||||||++|+|||||||
T Consensus 198 iG~~l~~~~~~~-~l~iD~v~D~~~l~~~~~~a~~~G~iilGGGvpKh~~~~~~l~~~~G~dYaVqItta~~~dGslSGA 276 (316)
T PRK02301 198 LGLQAWLYSQTN-KFTVDAFADMTELMDICYEAERAGALLVGGGVPKNYILQSMLVTPKAFDYAVQLTMDRPETGGLSGA 276 (316)
T ss_pred HHHHHHHHHhCC-CccccHHHHHHHHHHHHhccCceeEEEECCchHHHHHHHHHhccCCCCcEEEEEeCCCCCCccccCC
Confidence 999999999975 69999999999999999999999999999999999999999999 5999999999999999999999
Q ss_pred ChhhhhhhcccccCCCCeEEeccceeEeecccccccC
Q psy4459 337 RPDEAKSWGKIKREARPVKRNGADYAVFINTGVEYDG 373 (400)
Q Consensus 337 ~p~EaisWGKik~~~~~v~V~gDaTiv~Pll~~~~~g 373 (400)
||+||+|||||++++++|+|||||||+||+++++++.
T Consensus 277 ~~~EAvSWGKv~~~a~~v~V~~DATi~~PLl~a~~~~ 313 (316)
T PRK02301 277 TLDEARSWGKLGEDAKNVTVYGDATITLPLLVAAVRE 313 (316)
T ss_pred ChhhhhhcCCccCCCceEEEEEehhhHHHHHHHHHHh
Confidence 9999999999999999999999999999999988764
No 6
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-94 Score=701.86 Aligned_cols=264 Identities=47% Similarity=0.752 Sum_probs=249.6
Q ss_pred hhhhccCCceEEEecccccchhhhHHHHHHHHHcCCccEEEeCCCchhHHHHHhhc-CcccccccCCchhHHhcCccccc
Q psy4459 20 LFIVRKHNCTIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGGVEEDLIKCLA-PSYVGDFQLDGKTLRDEGINRID 98 (400)
Q Consensus 20 ~~~~~~~~~~ifl~~tgnm~~aGlr~~i~~Li~~~~Vd~iVtTgg~lehDi~~~~~-~~y~g~~~~dd~~L~~~ginRi~ 98 (400)
.+|+++. +|+||||||||+|+|||++|++|||+|+|||||||||||+||++|||+ +||+|+|.+||.+||++|+||||
T Consensus 48 ~~m~~~~-~tvfl~~tg~~vssGlR~iia~LIr~~~idvvVTTgg~l~hDi~~~lg~~~~~G~~~~dD~~Lr~~gi~RIg 126 (318)
T COG1899 48 REMLESR-VTVFLGLTGNLVSSGLREIIADLIRNGLIDVVVTTGGNLDHDIIKALGGPHYCGSFEVDDVELREEGINRIG 126 (318)
T ss_pred HHHHhhc-CEEEEeccccccchhHHHHHHHHHHcCCeEEEEecCCchhHHHHHHcCCCeeccCcCCCHHHHHHhcccccc
Confidence 4455544 999999999999999999999999999999999999999999999998 89999999999999999999999
Q ss_pred cCCCCCCCCCCcccceeecCccHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHhcccC-CCccHhHhhhhcCCCcc
Q psy4459 99 YGSEHGKKGSHVSKVHAVPNDNYCAFENWLMPILDTMLREQKETGTVWTPSRIISRLGMEIN-HEDSICYWAAHNHIPIF 177 (400)
Q Consensus 99 ~~~~~~~~~~~~~~d~~ip~e~~~~~E~~l~~il~~~~~~q~~~~~~~t~~e~~~~lGk~i~-~e~Sil~wAyk~~vPif 177 (400)
|+++|+|+|+.||+|+++|++++...|++ ||++||+|+|||+|+ +++||+||||+
T Consensus 127 --------------nv~vp~e~y~~~E~~i~~i~~~l~~~~~~----~s~~efi~elGk~l~~~e~SiL~~A~~------ 182 (318)
T COG1899 127 --------------NVFVPNEEYEVFEEFIREILEKLLGIKKE----WSTREFIYELGKRLNDDESSILYTAAK------ 182 (318)
T ss_pred --------------ceecChHHHHHHHHHHHHHHHHhhhcccc----ccHHHHHHHHHhhhCcccchHHHHHHH------
Confidence 99999999999999999999999876543 999999999999998 57777777665
Q ss_pred CCCccCCCccccceeecccCCCchhHHHHHHHHHhHhhhhccccceeeecCcccCCCchHhhHhhhCCCceecCCCCchh
Q psy4459 178 SPALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGAEINHEDSICYWAAHNHIPIFSPALTDGS 257 (400)
Q Consensus 178 ~Pa~~D~s~g~~l~~~~~~~~~l~iD~~~d~~~l~~~~~~s~~~~~i~~~G~~i~~e~Sil~~A~k~~vPVf~Pa~~Dgs 257 (400)
|||||||||++|||
T Consensus 183 ------------------------------------------------------------------~~VPIf~Pai~Dss 196 (318)
T COG1899 183 ------------------------------------------------------------------NGVPIFCPAITDSS 196 (318)
T ss_pred ------------------------------------------------------------------cCCCEEcCCcccch
Confidence 89999999999999
Q ss_pred HhHHHHHhhhc-CCcceeeHHHHHHHHHHHHhhcccceeEEecCccchhhhhhhcccccCcceEEEeccCCcccCCcCCC
Q psy4459 258 LGDMMYFHSFR-NPGLICDILQDLRRLNTMAVKAVNTGMIILGGGVIKHHICNANLMRNGADYAVFINTGVEYDGSDSGA 336 (400)
Q Consensus 258 iG~~l~~~~~~-~~~l~~D~~~D~~~l~~~~~~s~~~G~iilGGGv~Kh~i~~a~l~r~g~dyav~itta~e~dGs~SGA 336 (400)
+|+++|+|+++ ++.|.+|+++|+++|+++++.|+++|+||+||||||||++||||+|+|+|||||||||+|+|||||||
T Consensus 197 iG~~L~~~~~~~~~~l~iD~~~D~~~l~di~~~a~ktgaiilGGGvpKh~~i~~~l~r~g~DYAV~ITta~~~dGsLSGA 276 (318)
T COG1899 197 IGDMLWFHREEQGSDLKIDIVEDVHELNDIVFNAEKTGAIILGGGVPKHHIIQANLFRGGLDYAVQITTARPYDGSLSGA 276 (318)
T ss_pred HHHHHHHHHhcCCCeEEEeHHHhHHHHHHHHhhccceeEEEECCCccHHHHHHHHHhcCccceEEEEecCCCCCCCcCCC
Confidence 99999999985 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhcccccCCCCeEEeccceeEeecccccccCC
Q psy4459 337 RPDEAKSWGKIKREARPVKRNGADYAVFINTGVEYDGS 374 (400)
Q Consensus 337 ~p~EaisWGKik~~~~~v~V~gDaTiv~Pll~~~~~gs 374 (400)
||+||+|||||+++++.|+||||||++||+++++++..
T Consensus 277 ~~~EAvSWgKI~~~a~~V~v~~DATi~lPll~a~~~~~ 314 (318)
T COG1899 277 TPEEAVSWGKIKPDAKYVTVYGDATIVLPLLVAALLSR 314 (318)
T ss_pred ChHHcccccccCCCCceEEEEeehhhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999987754
No 7
>PRK00805 putative deoxyhypusine synthase; Provisional
Probab=100.00 E-value=1.5e-93 Score=706.39 Aligned_cols=270 Identities=27% Similarity=0.408 Sum_probs=250.0
Q ss_pred chhhhhccCCceEEEecccccchhhhHHHHHHHHHcCCccEEEeCCCchhHHHHHhhc-CcccccccCCchhHHhcCccc
Q psy4459 18 EDLFIVRKHNCTIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGGVEEDLIKCLA-PSYVGDFQLDGKTLRDEGINR 96 (400)
Q Consensus 18 ~~~~~~~~~~~~ifl~~tgnm~~aGlr~~i~~Li~~~~Vd~iVtTgg~lehDi~~~~~-~~y~g~~~~dd~~L~~~ginR 96 (400)
....|.++.+|+|||||||||+|||||++|++|||+|+||+|||||||||||++||++ +||+|+|++||.+||++|+||
T Consensus 37 i~~~Ml~d~~~~ifL~~tg~mvsaGlr~~i~~Li~~g~VD~iVTTgani~hD~~~~lg~~~y~g~f~~dd~~Lr~~ginR 116 (329)
T PRK00805 37 VWTEMLKDPDNTIFMGLSGAMVPAGMRKIIKWLIRNRYVDVLVSTGANIFHDIHEALGFKHYKGSHHVDDEELFKEGIDR 116 (329)
T ss_pred HHHHHHhCCCCeEEEEeccchHHHHHHHHHHHHHHcCCeeEEEeCCCchHHHHHHHcCCCeeccCCCCCHHHHHHcCCCc
Confidence 3456667889999999999999999999999999999999999999999999999998 799999999999999999999
Q ss_pred cccCCCCCCCCCCcccceeecCccHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHhcccCCCccHhHhhhhcCCCc
Q psy4459 97 IDYGSEHGKKGSHVSKVHAVPNDNYCAFENWLMPILDTMLREQKETGTVWTPSRIISRLGMEINHEDSICYWAAHNHIPI 176 (400)
Q Consensus 97 i~~~~~~~~~~~~~~~d~~ip~e~~~~~E~~l~~il~~~~~~q~~~~~~~t~~e~~~~lGk~i~~e~Sil~wAyk~~vPi 176 (400)
|| |++||||+||+||+|++++++++.++ .+|||+||+++|||+|+++
T Consensus 117 Ig--------------dv~ip~e~y~~~E~~i~~il~~~~~~-----~~~s~~e~i~~lGk~i~~~-------------- 163 (329)
T PRK00805 117 IY--------------DVFAYEEEFRKADNLIAEFAETLPGF-----KSYSSREFLYLLGKWLNEK-------------- 163 (329)
T ss_pred cc--------------ccccCHHHHHHHHHHHHHHHHHhccC-----CCccHHHHHHHHHHhhccc--------------
Confidence 99 99999999999999999999988533 2699999999999998742
Q ss_pred cCCCccCCCccccceeecccCCCchhHHHHHHHHHhHhhhhccccceeeecCcccCCCchHhhHhhhCCCceecCCCCch
Q psy4459 177 FSPALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGAEINHEDSICYWAAHNHIPIFSPALTDG 256 (400)
Q Consensus 177 f~Pa~~D~s~g~~l~~~~~~~~~l~iD~~~d~~~l~~~~~~s~~~~~i~~~G~~i~~e~Sil~~A~k~~vPVf~Pa~~Dg 256 (400)
+++||+||||||+|||||||++||
T Consensus 164 --------------------------------------------------------~~~Sil~~Ayk~~VPVf~Pa~~Ds 187 (329)
T PRK00805 164 --------------------------------------------------------DIDSIVAAAYRANVPIFVPALCDS 187 (329)
T ss_pred --------------------------------------------------------CcchHHHHHHHcCCCEEcCCcchh
Confidence 245666666669999999999999
Q ss_pred hHhHHHHHhhhcCCcceeeHHHHHHHHHHHHhhcccceeEEecCccchhhhhhhccc-------ccCcceEEEeccCCcc
Q psy4459 257 SLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGGVIKHHICNANLM-------RNGADYAVFINTGVEY 329 (400)
Q Consensus 257 siG~~l~~~~~~~~~l~~D~~~D~~~l~~~~~~s~~~G~iilGGGv~Kh~i~~a~l~-------r~g~dyav~itta~e~ 329 (400)
|+|+++|+|.++++++.+|+++|++++++++++|+++|+|+|||||||||++|+|++ |+|+||||||||++|+
T Consensus 188 siG~~l~~~~~~~~~~~iD~~~D~~~l~~~~~~a~~~G~iilGGGvpKh~~~~~~l~~~~~~~~~~G~dYaVqItta~~~ 267 (329)
T PRK00805 188 SIGIGLVIARRRGHRVVIDQIKDVDEITEIVEKSKKTGVIYIGGGVPKNFIQQTEVIASILGEDVEGHEYAIQYTTDAPH 267 (329)
T ss_pred hhhHHHHHHhccCCceeeeHHHHHHHHHHHHhccCceeEEEECCchhHhHHHHHHHHHHhhccCCCCCcEEEEEeCCCCC
Confidence 999999998875557999999999999999999999999999999999999999998 5699999999999999
Q ss_pred cCCcCCCChhhhhhhcccccCCCCeEEeccceeEeecccccccCCCC
Q psy4459 330 DGSDSGARPDEAKSWGKIKREARPVKRNGADYAVFINTGVEYDGSDS 376 (400)
Q Consensus 330 dGs~SGA~p~EaisWGKik~~~~~v~V~gDaTiv~Pll~~~~~gs~s 376 (400)
|||||||||+||+|||||+++++.|+|||||||+||+++++++....
T Consensus 268 dGslSGA~~~EAvSWGKv~~~a~~v~V~~DATI~~PLl~a~~~~~~~ 314 (329)
T PRK00805 268 WGGLSGCTFEEAVSWGKVAPKAKKVQVFVDATIALPLVAHALIEKGI 314 (329)
T ss_pred cccccCCChHHhhhcCCcCCCCceEEEEEehhhHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999887544
No 8
>PF01916 DS: Deoxyhypusine synthase; InterPro: IPR002773 Eukaryotic initiation factor 5A (eIF-5A), now considered to be an elongation factor (see IPR001884 from INTERPRO), contains an unusual amino acid, hypusine [N epsilon-(4-aminobutyl-2-hydroxy)lysine]. The first step in the post-translational formation of hypusine is catalysed by the enzyme deoxyhypusine synthase (DS) 2.5.1.46 from EC. The enzyme catalyses the following reaction: Spermidine + [eIF-5A]-lysine = 1,3-diaminopropane + [eIF-5A]-deoxyhypusine The modified version of eIF-5A, and DS, are required for eukaryotic cell proliferation []. The structure is known for this enzyme [] in complex with its NAD+ cofactor.; GO: 0008612 peptidyl-lysine modification to hypusine; PDB: 1RQD_A 1RLZ_A 1DHS_A 1ROZ_B.
Probab=100.00 E-value=1.9e-93 Score=698.88 Aligned_cols=267 Identities=45% Similarity=0.708 Sum_probs=215.4
Q ss_pred hhhhccC----CceEEEecccccchhhhHHHHHHHHHcCCccEEEeCCCchhHHHHHhhcCcccccccCCchhHHhcCcc
Q psy4459 20 LFIVRKH----NCTIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGGVEEDLIKCLAPSYVGDFQLDGKTLRDEGIN 95 (400)
Q Consensus 20 ~~~~~~~----~~~ifl~~tgnm~~aGlr~~i~~Li~~~~Vd~iVtTgg~lehDi~~~~~~~y~g~~~~dd~~L~~~gin 95 (400)
.+|.++. +|||||||||||+|||||++|++|||+|+||+|||||||||||++||++++|.|+|++||++||++|+|
T Consensus 26 ~~M~~~~~~~~~~tifLt~aGamvsaGLr~ii~~LIr~g~Vd~IvtTganl~hDi~~~lg~~~~g~~~~dD~~L~~~gi~ 105 (299)
T PF01916_consen 26 KEMLSDDRSKQDCTIFLTFAGAMVSAGLRGIIADLIRNGYVDVIVTTGANLEHDIIEALGHHYYGDFNADDAELREKGIN 105 (299)
T ss_dssp HHHHHHHS---SSEEEEEE-THHHHSTHHHHHHHHHHTT--SEEEE-HHHHHHHHHTTTS--EE--TT--HHHHHHTTEE
T ss_pred HHHHhhcccccCCeEEEEcccccccccHHHHHHHHHhCCceEEEEeCCCchHHHHHHHhCcceecCccCChHHHHHcCCc
Confidence 3455544 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCcccceeecCccHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHhcccCCCccHhHhhhhcCCC
Q psy4459 96 RIDYGSEHGKKGSHVSKVHAVPNDNYCAFENWLMPILDTMLREQKETGTVWTPSRIISRLGMEINHEDSICYWAAHNHIP 175 (400)
Q Consensus 96 Ri~~~~~~~~~~~~~~~d~~ip~e~~~~~E~~l~~il~~~~~~q~~~~~~~t~~e~~~~lGk~i~~e~Sil~wAyk~~vP 175 (400)
||| |++||||+|+.||+|++++++++.++|++.+.+|||+||+++||++|++++||++||||
T Consensus 106 Ri~--------------dv~ipee~~~~~E~~i~~il~~~~~~~~~~~~~~~~~e~~~~lG~~i~~e~Sil~~A~~---- 167 (299)
T PF01916_consen 106 RIY--------------DVFIPEENYRKFEDFIREILEELEEEQKKEGRPWSPSELIYELGKRINDEDSILYAAYK---- 167 (299)
T ss_dssp EET--------------TEEEEHHHHHHHHHHHHHHHHHHHHHHHHS-----HHHHHHHHHHHH--TT-HHHHHHH----
T ss_pred chh--------------eecccHHHHHHHHHHHHHHHHHHHHHhhccCceEcHHHHHHHHHhhcCCCCcHHHHHHH----
Confidence 999 99999999999999999999999988887788999999999999998877776666665
Q ss_pred ccCCCccCCCccccceeecccCCCchhHHHHHHHHHhHhhhhccccceeeecCcccCCCchHhhHhhhCCCceecCCCCc
Q psy4459 176 IFSPALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGAEINHEDSICYWAAHNHIPIFSPALTD 255 (400)
Q Consensus 176 if~Pa~~D~s~g~~l~~~~~~~~~l~iD~~~d~~~l~~~~~~s~~~~~i~~~G~~i~~e~Sil~~A~k~~vPVf~Pa~~D 255 (400)
|+|||||||++|
T Consensus 168 --------------------------------------------------------------------~~vPVf~Pa~~D 179 (299)
T PF01916_consen 168 --------------------------------------------------------------------NNVPVFCPAITD 179 (299)
T ss_dssp --------------------------------------------------------------------TT--EE-TTTTS
T ss_pred --------------------------------------------------------------------cCCCEECCCCcc
Confidence 899999999999
Q ss_pred hhHhHHHHHhhhcC--CcceeeHHHHHHHHHHHHhhcccceeEEecCccchhhhhhhcccccCcceEEEeccCCcccCCc
Q psy4459 256 GSLGDMMYFHSFRN--PGLICDILQDLRRLNTMAVKAVNTGMIILGGGVIKHHICNANLMRNGADYAVFINTGVEYDGSD 333 (400)
Q Consensus 256 gsiG~~l~~~~~~~--~~l~~D~~~D~~~l~~~~~~s~~~G~iilGGGv~Kh~i~~a~l~r~g~dyav~itta~e~dGs~ 333 (400)
||+|+++++|++++ ..+.+|+++|+++|++++++|+++|+|+|||||||||++|++++|+|+||||||||++|+||||
T Consensus 180 ssiG~~~~~~~~~~~~~~~~iD~~~D~~~l~~~~~~~~~~G~~~iGGGvpK~~~~~~~l~~~G~dYavqItta~~~~Gsl 259 (299)
T PF01916_consen 180 SSIGLQLAMHRQKGKPSKLIIDIVADMRELADIVFKAKKTGAIIIGGGVPKHFIIQANLFRGGLDYAVQITTAQESDGSL 259 (299)
T ss_dssp SHHHHHHHHHHHHS-TT-----SHHHHHHHHHHHHT-SSEEEEEES-THHHHHHHHHHHTTTSBSEEEEEE---STT--S
T ss_pred hHHHHHHHHHHHhcCCCceeecHHHHHHHHHHHHhhCCceeEEEECCchhHhHHHhHHhhhCCccEEEEEecCCCccccc
Confidence 99999999999876 4689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhhhcccccCCCCeEEeccceeEeeccccccc
Q psy4459 334 SGARPDEAKSWGKIKREARPVKRNGADYAVFINTGVEYD 372 (400)
Q Consensus 334 SGA~p~EaisWGKik~~~~~v~V~gDaTiv~Pll~~~~~ 372 (400)
|||||+|||||||++++++.|+|||||||+||+++++++
T Consensus 260 SGA~~~EaiSWGKi~~~~~~v~V~~DATIv~PLi~~~~l 298 (299)
T PF01916_consen 260 SGATPEEAISWGKIKPDAKSVTVYGDATIVLPLIVAAVL 298 (299)
T ss_dssp TT--HHHHHHHTSB-TT---EEEES-HHHHHHHHHHHTG
T ss_pred cCCChhhhhhcccccCCCceEEEEEehHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998765
No 9
>PRK02492 deoxyhypusine synthase-like protein; Provisional
Probab=100.00 E-value=2e-90 Score=688.25 Aligned_cols=284 Identities=25% Similarity=0.384 Sum_probs=254.2
Q ss_pred hhhhhccCCceEEEecccccchhhhHHHHHHHHHcCCccEEEeCCCch-hHHHHHhhc-CcccccccCCchhHHhcCccc
Q psy4459 19 DLFIVRKHNCTIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGGV-EEDLIKCLA-PSYVGDFQLDGKTLRDEGINR 96 (400)
Q Consensus 19 ~~~~~~~~~~~ifl~~tgnm~~aGlr~~i~~Li~~~~Vd~iVtTgg~l-ehDi~~~~~-~~y~g~~~~dd~~L~~~ginR 96 (400)
...|.++.+|+|||||||||+|||||++|++|||+|+||+|||||||+ |||++||+| +||+|+|++||++||++|+||
T Consensus 50 ~~~Ml~~~~~~ifL~~tgamvsaGlr~~i~~Li~~~~VD~iVTTganl~eeD~~k~~g~~~y~G~f~~dd~~Lr~~ginR 129 (347)
T PRK02492 50 YDMMLQDKECAVILTLAGSLSSAGCMQVYIDLVRNNMVDAIVATGANIVDQDFFEALGFKHYQGSPFVDDAVLRDLYIDR 129 (347)
T ss_pred HHHHHhCCCCeEEEEeccchHHHHHHHHHHHHHHcCCeeEEEECCCCchHHHHHHHcCCCeecCCCCCCHHHHHHcCCCc
Confidence 345667789999999999999999999999999999999999999996 999999998 799999999999999999999
Q ss_pred cccCCCCCCCCCCcccceeecCccHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHhcccCCCccHhHhhhhcCCCc
Q psy4459 97 IDYGSEHGKKGSHVSKVHAVPNDNYCAFENWLMPILDTMLREQKETGTVWTPSRIISRLGMEINHEDSICYWAAHNHIPI 176 (400)
Q Consensus 97 i~~~~~~~~~~~~~~~d~~ip~e~~~~~E~~l~~il~~~~~~q~~~~~~~t~~e~~~~lGk~i~~e~Sil~wAyk~~vPi 176 (400)
|| |++||||+||+||+|++++|+++. +.+||++||+|++||.|++
T Consensus 130 Ig--------------dv~ip~e~y~~~E~~v~~il~~~~------~~~~s~~e~~~~lGk~i~~--------------- 174 (347)
T PRK02492 130 IY--------------DTYIDEEELQVCDHTIAEIANSLE------PRPYSSREFIWEMGKYLEE--------------- 174 (347)
T ss_pred cc--------------ccccChHHHHHHHHHHHHHHHHhh------ccCCCHHHHHHHHHHHHHh---------------
Confidence 99 999999999999999999999873 2359999999999998763
Q ss_pred cCCCccCCCccccceeecccCCCchhHHHHHHHHHhHhhhhccccceeeecCcccCCCchHhhHhhhCCCceecCCCCch
Q psy4459 177 FSPALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGAEINHEDSICYWAAHNHIPIFSPALTDG 256 (400)
Q Consensus 177 f~Pa~~D~s~g~~l~~~~~~~~~l~iD~~~d~~~l~~~~~~s~~~~~i~~~G~~i~~e~Sil~~A~k~~vPVf~Pa~~Dg 256 (400)
..++|+|||||||||+|||||||++||
T Consensus 175 -----------------------------------------------------~~~~e~Sil~~Ayk~~VPIf~Pa~tDg 201 (347)
T PRK02492 175 -----------------------------------------------------NAKKENSLVQKAYEKGVPIFCPAFSDS 201 (347)
T ss_pred -----------------------------------------------------cCCCcchHHHHHHHcCCCEECCCchhh
Confidence 124678888888889999999999999
Q ss_pred hHhHHHHHhhhcC--CcceeeHHHHHHHHHHHHhhcccceeEEecCccchhhhhhhccccc--C-----cceEEEeccCC
Q psy4459 257 SLGDMMYFHSFRN--PGLICDILQDLRRLNTMAVKAVNTGMIILGGGVIKHHICNANLMRN--G-----ADYAVFINTGV 327 (400)
Q Consensus 257 siG~~l~~~~~~~--~~l~~D~~~D~~~l~~~~~~s~~~G~iilGGGv~Kh~i~~a~l~r~--g-----~dyav~itta~ 327 (400)
|+|+++|+|++++ +++.+|+++|+++|++++++|+++|+|+|||||||||+||++++++ | +||||||||++
T Consensus 202 siG~~l~~~~~~~~~~~l~iD~~~D~~~l~~~~~~ak~~G~iilGGGvpKh~~~~~~~~~~~~g~~~~~~dYaVqItta~ 281 (347)
T PRK02492 202 SAGFGLVHHQVKNPDPHVTIDSVKDFRELTDIKIAAGTTGLFMIGGGVPKNFAQDTVVAAEVLGYEVSMHKYAVQITVAD 281 (347)
T ss_pred HHHHHHHHHHhhcCCCceEEeHHHHHHHHHHHHhccCceEEEEECCchhhhHHHHHHHHHHhhcCCCCcCCEEEEEeCCC
Confidence 9999999999874 3699999999999999999999999999999999999999887765 5 79999999999
Q ss_pred cccCCcCCCChhhhhhhcccccCCCCeEEeccceeEeecccccccCCCCCCChhhhhHHhhhhcc
Q psy4459 328 EYDGSDSGARPDEAKSWGKIKREARPVKRNGADYAVFINTGVEYDGSDSGARPDEAKSWGKIKRE 392 (400)
Q Consensus 328 e~dGs~SGA~p~EaisWGKik~~~~~v~V~gDaTiv~Pll~~~~~gs~sGar~~Ea~swgki~~~ 392 (400)
|+|||||||||+||||||||+ ++++|+|||||||+||+++++++.... .+++.++.+.+++++
T Consensus 282 ~~dGslSGA~p~EAvSWGKv~-~~~~v~V~~DATI~~PLl~a~~~~~~~-~~~~~~~~~~~~~~~ 344 (347)
T PRK02492 282 VRDGALSSSTLKEASSWGKVD-TAYEQMVFAEATSALPLIASYAYHKGN-WEGREARRFNKLFDK 344 (347)
T ss_pred CCCCcccCCChhhhccccccC-CCceEEEEEehhhHHHHHHHHHHHhhc-cccCCchhhHHHhcc
Confidence 999999999999999999999 568999999999999999999776432 223344444445544
No 10
>PRK00770 deoxyhypusine synthase-like protein; Provisional
Probab=100.00 E-value=1.4e-87 Score=675.34 Aligned_cols=276 Identities=23% Similarity=0.289 Sum_probs=250.5
Q ss_pred cCCceEEEecccccchhhhH-HHHHHHHHcCCccEEEeCCCchhHHHHHhhc-CcccccccCCchhHHhcCccccccCCC
Q psy4459 25 KHNCTIFLGYTSNMVSSGVR-ETIKFLVQHKLVDAIVTTAGGVEEDLIKCLA-PSYVGDFQLDGKTLRDEGINRIDYGSE 102 (400)
Q Consensus 25 ~~~~~ifl~~tgnm~~aGlr-~~i~~Li~~~~Vd~iVtTgg~lehDi~~~~~-~~y~g~~~~dd~~L~~~ginRi~~~~~ 102 (400)
+.+|+|||||||||++|||| ++|++|||+|+||+|||||||++||+++|++ +||+|+|.+||.+||++|+||||
T Consensus 49 ~~~~tvfLtltgamisaGLr~~ii~~LIr~g~VD~IVTTGAnl~hD~~~alg~~~y~G~~~~dd~~Lr~~GinRI~---- 124 (384)
T PRK00770 49 DDGVTVGLTLSGAMTPAGFGVSALAPLIEAGFIDWIISTGANLYHDLHYALGLPLFAGHPFVDDVKLREEGIIRIY---- 124 (384)
T ss_pred hcCCcEEEEeccchhhhhcChHHHHHHHHcCCccEEEcCCccHHHHHHHHhCCCcccCCCCCCHHHHHHcCCCccc----
Confidence 47899999999999999999 9999999999999999999999999999997 89999999999999999999999
Q ss_pred CCCCCCCcccceeecCccHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHhcccCCCccHhHhhhhcCCCccCCCcc
Q psy4459 103 HGKKGSHVSKVHAVPNDNYCAFENWLMPILDTMLREQKETGTVWTPSRIISRLGMEINHEDSICYWAAHNHIPIFSPALT 182 (400)
Q Consensus 103 ~~~~~~~~~~d~~ip~e~~~~~E~~l~~il~~~~~~q~~~~~~~t~~e~~~~lGk~i~~e~Sil~wAyk~~vPif~Pa~~ 182 (400)
|++||+++|+.||.+|++++++.. . ..+|||+||+++|||+|++.. .
T Consensus 125 ----------dv~ip~e~~~~~e~~l~~il~~~~-~----~~~~s~~E~i~~LGk~i~~~~--------~---------- 171 (384)
T PRK00770 125 ----------DIIFDYDVLLETDAFIREILKAEP-F----QKRMGTAEFHYLLGKYVREVE--------K---------- 171 (384)
T ss_pred ----------ccCcChHHHHHHHHHHHHHHHhcc-c----cCCccHHHHHHHHHHHhhhhc--------c----------
Confidence 999999999999999999887642 1 246999999999999987421 0
Q ss_pred CCCccccceeecccCCCchhHHHHHHHHHhHhhhhccccceeeecCcccCCCchHhhHhhhCCCceecCCCCchhHhHHH
Q psy4459 183 DGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGAEINHEDSICYWAAHNHIPIFSPALTDGSLGDMM 262 (400)
Q Consensus 183 D~s~g~~l~~~~~~~~~l~iD~~~d~~~l~~~~~~s~~~~~i~~~G~~i~~e~Sil~~A~k~~vPVf~Pa~~DgsiG~~l 262 (400)
....+|+||++|||||||||||||++|||+|+++
T Consensus 172 ----------------------------------------------~~~~~e~SiL~~Ayk~~IPVf~Pa~~DssiG~~l 205 (384)
T PRK00770 172 ----------------------------------------------QLGVPHKSLLATAYEYGVPIYTSSPGDSSIGMNV 205 (384)
T ss_pred ----------------------------------------------cCCCCcccHHHHHHHcCCCEECCCchHhHHHHHH
Confidence 0123578899999999999999999999999999
Q ss_pred HHhhhcCCcceeeHHHHHHHHHHHHhhcccc----eeEEecCccchhhhhhh--------cccccCcceEEEeccCCccc
Q psy4459 263 YFHSFRNPGLICDILQDLRRLNTMAVKAVNT----GMIILGGGVIKHHICNA--------NLMRNGADYAVFINTGVEYD 330 (400)
Q Consensus 263 ~~~~~~~~~l~~D~~~D~~~l~~~~~~s~~~----G~iilGGGv~Kh~i~~a--------~l~r~g~dyav~itta~e~d 330 (400)
|+|+++++.+.+|+++|++++++++++|+++ |+|||||||||||+||+ |++++|+|||||||||+|+|
T Consensus 206 ~~~~~~~~~~~iD~v~D~~~~~~i~~~a~~~~~~~G~iilGGGvpKh~~~~~~~~~~~il~l~~~G~dYaVqItta~~~d 285 (384)
T PRK00770 206 AALALEGSELVLDPAIDVNETAAIAYNAKESEGKSGAVILGGGSPKNFLLQTQPQIHEVLGLEERGHDYFIQITDARPDT 285 (384)
T ss_pred HHHHhcCCccccchhcCHHHHHHHHHhcCCCCCCceEEEECCchhhhhHhhhHHHHHHHhhccCCcccEEEEEeCCCCCC
Confidence 9999987789999999999999999999988 99999999999999998 44589999999999999999
Q ss_pred CCcCCCChhhhhhhcccccCC--CCeEEeccceeEeecccccccCCCCCCChhhhhHH
Q psy4459 331 GSDSGARPDEAKSWGKIKREA--RPVKRNGADYAVFINTGVEYDGSDSGARPDEAKSW 386 (400)
Q Consensus 331 Gs~SGA~p~EaisWGKik~~~--~~v~V~gDaTiv~Pll~~~~~gs~sGar~~Ea~sw 386 (400)
||||||||+||||||||++++ +.|+|||||||+||++++++++.. ++++.+..
T Consensus 286 GslSGA~p~EAvSWGKv~~~a~~~~v~Vy~DATI~~PLl~a~~l~~~---~~r~~~~~ 340 (384)
T PRK00770 286 GGLSGATPSEAVSWGKVDPDELPDTVVCYTDSTIALPLLTAYALNTC---KPRPLKRL 340 (384)
T ss_pred CcccCCChhhhhccCCCCcccCCccEEEEEehhhHHHHHHHHHHhhc---CCCchhhH
Confidence 999999999999999999999 899999999999999999988754 34444443
No 11
>KOG2924|consensus
Probab=99.80 E-value=1.7e-20 Score=182.69 Aligned_cols=101 Identities=41% Similarity=0.594 Sum_probs=93.1
Q ss_pred ccceeecccCCCchhHHHHHHHHHhHhhhhccccceeeecCcccCCCc-hHhhHhhhCCCceecC--CCCchhHhHHHHH
Q psy4459 188 DMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGAEINHED-SICYWAAHNHIPIFSP--ALTDGSLGDMMYF 264 (400)
Q Consensus 188 ~~l~~~~~~~~~l~iD~~~d~~~l~~~~~~s~~~~~i~~~G~~i~~e~-Sil~~A~k~~vPVf~P--a~~DgsiG~~l~~ 264 (400)
||||||+++.+.|.+|+|+|+|++|..++.+-++|+|++|||++||+. +..+.-...+-.||+. ...|||
T Consensus 243 DmlyFHs~k~~~L~~DIv~Dir~iNt~av~a~~tgmIIlGgGvvKHHI~NAnLmrNGad~~VyINtaqEfDGS------- 315 (366)
T KOG2924|consen 243 DMLYFHSFKNSGLVLDIVEDIRRINTEAVFANKTGMIILGGGVVKHHICNANLMRNGADYAVYINTAQEFDGS------- 315 (366)
T ss_pred ceEEEeeccCCCeEEeHHHHHHhhhhhhhhccccceEEEcCchhhhhcchhhhhhcCcceEEEecccccccCc-------
Confidence 699999999999999999999999999999999999999999999998 7888888889999998 788999
Q ss_pred hhhcCCcceeeHHHHHHHHHHHHhhcccceeEEecCccchhhhhhhccc
Q psy4459 265 HSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGGVIKHHICNANLM 313 (400)
Q Consensus 265 ~~~~~~~l~~D~~~D~~~l~~~~~~s~~~G~iilGGGv~Kh~i~~a~l~ 313 (400)
+.|...| +|++||.|-.+..-+|-| +++.++
T Consensus 316 ----DsGArpD-------------EAVSWGKir~~a~~VKvy-~datlv 346 (366)
T KOG2924|consen 316 ----DSGARPD-------------EAVSWGKIRPDAKPVKVY-ADATLV 346 (366)
T ss_pred ----ccCCCcc-------------cccccccccCCCceEEEE-eeeeeh
Confidence 7889999 899999999999999998 555543
No 12
>PRK00770 deoxyhypusine synthase-like protein; Provisional
Probab=99.75 E-value=3e-19 Score=181.12 Aligned_cols=121 Identities=19% Similarity=0.158 Sum_probs=97.9
Q ss_pred CCccHhHhhhhcCCCccCCCccCCCccccceeecccCCCchhHHHHHHHHHhHhhhhcccc----ceeeecCcccCCCch
Q psy4459 161 HEDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNT----GMIILGGAEINHEDS 236 (400)
Q Consensus 161 ~e~Sil~wAyk~~vPif~Pa~~D~s~g~~l~~~~~~~~~l~iD~~~d~~~l~~~~~~s~~~----~~i~~~G~~i~~e~S 236 (400)
+++||+||||||+|||||||++|||+|+++|+|++.++.+.+|+++|++++++++++|.++ |+|++|||.+||+.-
T Consensus 176 ~e~SiL~~Ayk~~IPVf~Pa~~DssiG~~l~~~~~~~~~~~iD~v~D~~~~~~i~~~a~~~~~~~G~iilGGGvpKh~~~ 255 (384)
T PRK00770 176 PHKSLLATAYEYGVPIYTSSPGDSSIGMNVAALALEGSELVLDPAIDVNETAAIAYNAKESEGKSGAVILGGGSPKNFLL 255 (384)
T ss_pred CcccHHHHHHHcCCCEECCCchHhHHHHHHHHHHhcCCccccchhcCHHHHHHHHHhcCCCCCCceEEEECCchhhhhHh
Confidence 5799999999999999999999999999999999998899999999999999999999988 999999999999874
Q ss_pred HhhH---------hhhCCCceecC--CCCchhHhHHHHHhhhcCCcceeeHHHHHHHHHHHHhhcccceeEEecCccchh
Q psy4459 237 ICYW---------AAHNHIPIFSP--ALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGGVIKH 305 (400)
Q Consensus 237 il~~---------A~k~~vPVf~P--a~~DgsiG~~l~~~~~~~~~l~~D~~~D~~~l~~~~~~s~~~G~iilGGGv~Kh 305 (400)
+... .-.++--|++- ...||| -.|.+++ +|++||.|-... .+++
T Consensus 256 ~~~~~~~~il~l~~~G~dYaVqItta~~~dGs-----------lSGA~p~-------------EAvSWGKv~~~a-~~~~ 310 (384)
T PRK00770 256 QTQPQIHEVLGLEERGHDYFIQITDARPDTGG-----------LSGATPS-------------EAVSWGKVDPDE-LPDT 310 (384)
T ss_pred hhHHHHHHHhhccCCcccEEEEEeCCCCCCCc-----------ccCCChh-------------hhhccCCCCccc-CCcc
Confidence 3211 12333344443 566676 3466666 789999887654 3455
Q ss_pred h
Q psy4459 306 H 306 (400)
Q Consensus 306 ~ 306 (400)
.
T Consensus 311 v 311 (384)
T PRK00770 311 V 311 (384)
T ss_pred E
Confidence 4
No 13
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1e-15 Score=151.25 Aligned_cols=101 Identities=36% Similarity=0.523 Sum_probs=89.5
Q ss_pred CccCCCccCCCccccceeeccc-CCCchhHHHHHHHHHhHhhhhccccceeeecCcccCCCc-hHhhHhhhCCCceecC-
Q psy4459 175 PIFSPALTDGSLGDMMYFHSFR-NPGLICDILQDLRRLNTMAVKAVNTGMIILGGAEINHED-SICYWAAHNHIPIFSP- 251 (400)
Q Consensus 175 Pif~Pa~~D~s~g~~l~~~~~~-~~~l~iD~~~d~~~l~~~~~~s~~~~~i~~~G~~i~~e~-Sil~~A~k~~vPVf~P- 251 (400)
||||||++|||+|++||+|++. .+.+.||+++|+++||+++++|.++|+|++||+.+||+. .+.+.+-..+--||+-
T Consensus 186 PIf~Pai~DssiG~~L~~~~~~~~~~l~iD~~~D~~~l~di~~~a~ktgaiilGGGvpKh~~i~~~l~r~g~DYAV~ITt 265 (318)
T COG1899 186 PIFCPAITDSSIGDMLWFHREEQGSDLKIDIVEDVHELNDIVFNAEKTGAIILGGGVPKHHIIQANLFRGGLDYAVQITT 265 (318)
T ss_pred CEEcCCcccchHHHHHHHHHhcCCCeEEEeHHHhHHHHHHHHhhccceeEEEECCCccHHHHHHHHHhcCccceEEEEec
Confidence 8999999999999999999996 779999999999999999999999999999999999988 6777777788888876
Q ss_pred -CCCchhHhHHHHHhhhcCCcceeeHHHHHHHHHHHHhhcccceeEEec
Q psy4459 252 -ALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILG 299 (400)
Q Consensus 252 -a~~DgsiG~~l~~~~~~~~~l~~D~~~D~~~l~~~~~~s~~~G~iilG 299 (400)
...||| -.|..++ +|++||.|-..
T Consensus 266 a~~~dGs-----------LSGA~~~-------------EAvSWgKI~~~ 290 (318)
T COG1899 266 ARPYDGS-----------LSGATPE-------------EAVSWGKIKPD 290 (318)
T ss_pred CCCCCCC-----------cCCCChH-------------HcccccccCCC
Confidence 678888 3466666 89999988654
No 14
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=99.54 E-value=1.6e-15 Score=150.55 Aligned_cols=102 Identities=24% Similarity=0.394 Sum_probs=86.1
Q ss_pred CccCCCccCCCccccceeecccCCCchhHHHHHHHHHhHhhhhccccceeeecCcccCCCch-HhhHhhhCCCceecC--
Q psy4459 175 PIFSPALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGAEINHEDS-ICYWAAHNHIPIFSP-- 251 (400)
Q Consensus 175 Pif~Pa~~D~s~g~~l~~~~~~~~~l~iD~~~d~~~l~~~~~~s~~~~~i~~~G~~i~~e~S-il~~A~k~~vPVf~P-- 251 (400)
||||||++|||+|+++|+|+++++.+.+|+++|+++||+++++|.++|+|++|||.+||+.- |.+.+-..+--|++-
T Consensus 186 PVf~Pa~~DgsiG~~l~~~~~~~~~l~iD~~~D~~~l~~~~~~a~k~G~iilGGGvpKh~~~~~~~~~~G~DyaVqItta 265 (312)
T PRK01221 186 PVFVPGIVDGAFGTQLFTFSQRFGGFKINLLEDEELLSDLVFSSKKLGALIIGGGISKHHTIWWNQFKDGLDYAVYITTA 265 (312)
T ss_pred CEECCCccHHHHHHHHHHHhhcCCCcceeHHHHHHHHHHHHhccCceEEEEECCCcchhHHHHHHhhccCCCEEEEEeCC
Confidence 89999999999999999999988889999999999999999999999999999999999883 445555555555554
Q ss_pred CCCchhHhHHHHHhhhcCCcceeeHHHHHHHHHHHHhhcccceeEEecC
Q psy4459 252 ALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGG 300 (400)
Q Consensus 252 a~~DgsiG~~l~~~~~~~~~l~~D~~~D~~~l~~~~~~s~~~G~iilGG 300 (400)
...||| -.|.+++ +|++||.+-...
T Consensus 266 ~~~dGs-----------lSGA~~~-------------EAvSWGKv~~~a 290 (312)
T PRK01221 266 VEYDGS-----------LSGARPR-------------EAISWGKIKPEA 290 (312)
T ss_pred CCCCCc-----------ccCCChh-------------hhhccCCccCCC
Confidence 667777 3466677 899999886544
No 15
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=99.48 E-value=6.1e-15 Score=145.81 Aligned_cols=101 Identities=36% Similarity=0.539 Sum_probs=81.4
Q ss_pred CccCCCccCCCccccceeecccCCCchhHHHHHHHHHhHhhhhccccceeeecCcccCCCc-hHhhHhhhCCCceecC--
Q psy4459 175 PIFSPALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGAEINHED-SICYWAAHNHIPIFSP-- 251 (400)
Q Consensus 175 Pif~Pa~~D~s~g~~l~~~~~~~~~l~iD~~~d~~~l~~~~~~s~~~~~i~~~G~~i~~e~-Sil~~A~k~~vPVf~P-- 251 (400)
||||||++|||+|+++|+|+++ +++.+|+++|+++++.++++|.++|+|++|||.+||+. .+....-..+--|++-
T Consensus 176 PIf~Pa~~DssiG~~l~~~~~~-~~l~iD~v~D~~~l~~i~~~~~~~G~iilGGGvpKh~~~~~~l~~~G~dYaVqItta 254 (301)
T TIGR00321 176 PIFCPALTDSSIGLMLFFYTKK-NSLRIDIVRDIRKLNDIVFNSERTGVIILGGGLPKHFILNACLLREGADYAVQITTD 254 (301)
T ss_pred CEECCCchHhHHHHHHHHHHhc-CCeeeehHhhHHHHHHHHHccCceEEEEECCchhhhHHHHhhhccCCCCEEEEEeCC
Confidence 8999999999999999999997 46999999999999999999999999999999999987 3343333333333333
Q ss_pred CCCchhHhHHHHHhhhcCCcceeeHHHHHHHHHHHHhhcccceeEEecC
Q psy4459 252 ALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGG 300 (400)
Q Consensus 252 a~~DgsiG~~l~~~~~~~~~l~~D~~~D~~~l~~~~~~s~~~G~iilGG 300 (400)
...||| -.|.+++ +|++||.|-...
T Consensus 255 ~~~dGs-----------lSGA~~~-------------EAvSWGKi~~~a 279 (301)
T TIGR00321 255 QPQDGS-----------LSGAPLE-------------EAVSWGKIKAKA 279 (301)
T ss_pred CCCCCc-----------ccCCChh-------------hhhccCCccCCC
Confidence 566676 3467777 899999886544
No 16
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=99.46 E-value=1e-14 Score=144.98 Aligned_cols=100 Identities=20% Similarity=0.266 Sum_probs=80.0
Q ss_pred CccCCCccCCCccccceeecccCCCchhHHHHHHHHHhHhhhhccccceeeecCcccCCCchH-hhHh-hhCCCceecC-
Q psy4459 175 PIFSPALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGAEINHEDSI-CYWA-AHNHIPIFSP- 251 (400)
Q Consensus 175 Pif~Pa~~D~s~g~~l~~~~~~~~~l~iD~~~d~~~l~~~~~~s~~~~~i~~~G~~i~~e~Si-l~~A-~k~~vPVf~P- 251 (400)
||||||++|||+|+++|+|+++. .+.+|+++|+++||+++++|.++|+|++|||.+||+.-+ .+.. -..+--|++-
T Consensus 187 PIf~Pa~~DssiG~~l~~~~~~~-~l~iD~v~D~~~l~~~~~~a~~~G~iilGGGvpKh~~~~~~l~~~~G~dYaVqItt 265 (316)
T PRK02301 187 PVYCPAIQDSVLGLQAWLYSQTN-KFTVDAFADMTELMDICYEAERAGALLVGGGVPKNYILQSMLVTPKAFDYAVQLTM 265 (316)
T ss_pred CEECCCcchhHHHHHHHHHHhCC-CccccHHHHHHHHHHHHhccCceeEEEECCchHHHHHHHHHhccCCCCcEEEEEeC
Confidence 89999999999999999999874 588999999999999999999999999999999998522 2222 1333444443
Q ss_pred -CCCchhHhHHHHHhhhcCCcceeeHHHHHHHHHHHHhhcccceeEEec
Q psy4459 252 -ALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILG 299 (400)
Q Consensus 252 -a~~DgsiG~~l~~~~~~~~~l~~D~~~D~~~l~~~~~~s~~~G~iilG 299 (400)
...||| -.|.+++ +|++||.|-..
T Consensus 266 a~~~dGs-----------lSGA~~~-------------EAvSWGKv~~~ 290 (316)
T PRK02301 266 DRPETGG-----------LSGATLD-------------EARSWGKLGED 290 (316)
T ss_pred CCCCCcc-----------ccCCChh-------------hhhhcCCccCC
Confidence 566777 3566777 78999988654
No 17
>PRK03971 putative deoxyhypusine synthase; Provisional
Probab=99.46 E-value=1e-14 Score=145.88 Aligned_cols=117 Identities=38% Similarity=0.566 Sum_probs=94.7
Q ss_pred cCCCccHhHhhhhcCCCccCCCccCCCccccceeeccc-C-CCchhHHHHHHHHHhHhhhhccccceeeecCcccCCCch
Q psy4459 159 INHEDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFR-N-PGLICDILQDLRRLNTMAVKAVNTGMIILGGAEINHEDS 236 (400)
Q Consensus 159 i~~e~Sil~wAyk~~vPif~Pa~~D~s~g~~l~~~~~~-~-~~l~iD~~~d~~~l~~~~~~s~~~~~i~~~G~~i~~e~S 236 (400)
.++++||+||||||+||||||||+|||+|+++|+|++. . +++.+|+++|++++|.++++|.++|+|++|||.+||+.-
T Consensus 190 ~~~e~Sil~~Ayk~~VPIf~Pa~tDgsiG~~l~~~~~~~~~~~l~~D~~~D~~~l~~i~~~s~k~G~iilGGGvpKh~~~ 269 (334)
T PRK03971 190 KEKEKSILYWAYKNNIPIFCPAITDGSIGDMLYFFKKEGKDSELGIDIANDIVKLNDLAITAKETACIVLGGSLPKHSII 269 (334)
T ss_pred CCccchHHHHHHHcCCCEEcCCcchhhHHHHHHHHHhhcCCCceEEeHHHHHHHHHHHHhccCceEEEEECCchHHHHHH
Confidence 56789999999999999999999999999999999984 3 469999999999999999999999999999999999831
Q ss_pred -HhhHhhhCCCceecC--CCCchhHhHHHHHhhhcCCcceeeHHHHHHHHHHHHhhcccceeEEec
Q psy4459 237 -ICYWAAHNHIPIFSP--ALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILG 299 (400)
Q Consensus 237 -il~~A~k~~vPVf~P--a~~DgsiG~~l~~~~~~~~~l~~D~~~D~~~l~~~~~~s~~~G~iilG 299 (400)
+.+..-..+--||+. ...||| -.|.++| +|++||.|-..
T Consensus 270 ~~~l~~~G~dYaVqItta~~~dGs-----------lSGA~p~-------------EAvSWGKi~~~ 311 (334)
T PRK03971 270 NANLFRGGTDYAIYITTAMPWDGS-----------LSGAPPE-------------EGVSWGKIKAK 311 (334)
T ss_pred HHhcccCCCCEEEEEeCCCCCCCc-----------ccCCChh-------------hhhccCCccCC
Confidence 122222333333333 566777 4567777 89999988653
No 18
>PRK02492 deoxyhypusine synthase-like protein; Provisional
Probab=99.45 E-value=2.2e-14 Score=144.27 Aligned_cols=125 Identities=23% Similarity=0.370 Sum_probs=102.9
Q ss_pred cchHHHHHHHhcccCCCccHhHhhhhcCCCccCCCccCCCccccceeecccCC--CchhHHHHHHHHHhHhhhhccccce
Q psy4459 146 WTPSRIISRLGMEINHEDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNP--GLICDILQDLRRLNTMAVKAVNTGM 223 (400)
Q Consensus 146 ~t~~e~~~~lGk~i~~e~Sil~wAyk~~vPif~Pa~~D~s~g~~l~~~~~~~~--~l~iD~~~d~~~l~~~~~~s~~~~~ 223 (400)
|.+.+.+.++|+ +++||+||||||+|||||||++|||+|+++|+|+++++ ++.||+++|++++|+++++|.++|+
T Consensus 166 ~~lGk~i~~~~~---~e~Sil~~Ayk~~VPIf~Pa~tDgsiG~~l~~~~~~~~~~~l~iD~~~D~~~l~~~~~~ak~~G~ 242 (347)
T PRK02492 166 WEMGKYLEENAK---KENSLVQKAYEKGVPIFCPAFSDSSAGFGLVHHQVKNPDPHVTIDSVKDFRELTDIKIAAGTTGL 242 (347)
T ss_pred HHHHHHHHhcCC---CcchHHHHHHHcCCCEECCCchhhHHHHHHHHHHhhcCCCceEEeHHHHHHHHHHHHhccCceEE
Confidence 555667777665 78999999999999999999999999999999999864 6999999999999999999999999
Q ss_pred eeecCcccCCCch-HhhHhh--hC-----CCceecC--CCCchhHhHHHHHhhhcCCcceeeHHHHHHHHHHHHhhcccc
Q psy4459 224 IILGGAEINHEDS-ICYWAA--HN-----HIPIFSP--ALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNT 293 (400)
Q Consensus 224 i~~~G~~i~~e~S-il~~A~--k~-----~vPVf~P--a~~DgsiG~~l~~~~~~~~~l~~D~~~D~~~l~~~~~~s~~~ 293 (400)
|++|||.+||+.- |...+. .+ +--||+- ...||| -.|.+++ +|++|
T Consensus 243 iilGGGvpKh~~~~~~~~~~~~g~~~~~~dYaVqItta~~~dGs-----------lSGA~p~-------------EAvSW 298 (347)
T PRK02492 243 FMIGGGVPKNFAQDTVVAAEVLGYEVSMHKYAVQITVADVRDGA-----------LSSSTLK-------------EASSW 298 (347)
T ss_pred EEECCchhhhHHHHHHHHHHhhcCCCCcCCEEEEEeCCCCCCCc-----------ccCCChh-------------hhccc
Confidence 9999999999983 333343 32 3334443 566777 3567777 89999
Q ss_pred eeEE
Q psy4459 294 GMII 297 (400)
Q Consensus 294 G~ii 297 (400)
|.|-
T Consensus 299 GKv~ 302 (347)
T PRK02492 299 GKVD 302 (347)
T ss_pred cccC
Confidence 9986
No 19
>PRK00805 putative deoxyhypusine synthase; Provisional
Probab=99.44 E-value=2.8e-14 Score=142.60 Aligned_cols=113 Identities=26% Similarity=0.302 Sum_probs=93.2
Q ss_pred cHhHhhhhcCCCccCCCccCCCccccceeecccCCCchhHHHHHHHHHhHhhhhccccceeeecCcccCCCchH-hhHhh
Q psy4459 164 SICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGAEINHEDSI-CYWAA 242 (400)
Q Consensus 164 Sil~wAyk~~vPif~Pa~~D~s~g~~l~~~~~~~~~l~iD~~~d~~~l~~~~~~s~~~~~i~~~G~~i~~e~Si-l~~A~ 242 (400)
||+||||||+|||||||++|||+|+++|||.+..+.+.+|+++|+++++.++++|.++|+|++|||.+||+.-+ ....-
T Consensus 167 Sil~~Ayk~~VPVf~Pa~~DssiG~~l~~~~~~~~~~~iD~~~D~~~l~~~~~~a~~~G~iilGGGvpKh~~~~~~l~~~ 246 (329)
T PRK00805 167 SIVAAAYRANVPIFVPALCDSSIGIGLVIARRRGHRVVIDQIKDVDEITEIVEKSKKTGVIYIGGGVPKNFIQQTEVIAS 246 (329)
T ss_pred hHHHHHHHcCCCEEcCCcchhhhhHHHHHHhccCCceeeeHHHHHHHHHHHHhccCceeEEEECCchhHhHHHHHHHHHH
Confidence 89999999999999999999999999999987666799999999999999999999999999999999998833 33321
Q ss_pred -------hCCCceecC--CCCchhHhHHHHHhhhcCCcceeeHHHHHHHHHHHHhhcccceeEEecC
Q psy4459 243 -------HNHIPIFSP--ALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGG 300 (400)
Q Consensus 243 -------k~~vPVf~P--a~~DgsiG~~l~~~~~~~~~l~~D~~~D~~~l~~~~~~s~~~G~iilGG 300 (400)
..+--|++- ...||| -.|.+++ +|++||.+-.+.
T Consensus 247 ~~~~~~~G~dYaVqItta~~~dGs-----------lSGA~~~-------------EAvSWGKv~~~a 289 (329)
T PRK00805 247 ILGEDVEGHEYAIQYTTDAPHWGG-----------LSGCTFE-------------EAVSWGKVAPKA 289 (329)
T ss_pred hhccCCCCCcEEEEEeCCCCCccc-----------ccCCChH-------------HhhhcCCcCCCC
Confidence 233334443 667777 3466676 789999886644
No 20
>PF01916 DS: Deoxyhypusine synthase; InterPro: IPR002773 Eukaryotic initiation factor 5A (eIF-5A), now considered to be an elongation factor (see IPR001884 from INTERPRO), contains an unusual amino acid, hypusine [N epsilon-(4-aminobutyl-2-hydroxy)lysine]. The first step in the post-translational formation of hypusine is catalysed by the enzyme deoxyhypusine synthase (DS) 2.5.1.46 from EC. The enzyme catalyses the following reaction: Spermidine + [eIF-5A]-lysine = 1,3-diaminopropane + [eIF-5A]-deoxyhypusine The modified version of eIF-5A, and DS, are required for eukaryotic cell proliferation []. The structure is known for this enzyme [] in complex with its NAD+ cofactor.; GO: 0008612 peptidyl-lysine modification to hypusine; PDB: 1RQD_A 1RLZ_A 1DHS_A 1ROZ_B.
Probab=99.19 E-value=1.7e-12 Score=128.46 Aligned_cols=61 Identities=41% Similarity=0.662 Sum_probs=50.1
Q ss_pred CccCCCccCCCccccceeecccC--CCchhHHHHHHHHHhHhhhhccccceeeecCcccCCCc
Q psy4459 175 PIFSPALTDGSLGDMMYFHSFRN--PGLICDILQDLRRLNTMAVKAVNTGMIILGGAEINHED 235 (400)
Q Consensus 175 Pif~Pa~~D~s~g~~l~~~~~~~--~~l~iD~~~d~~~l~~~~~~s~~~~~i~~~G~~i~~e~ 235 (400)
||||||++|||+|+++++|++++ ..+.+|.++|++++++++++|.++|++++|||.+||..
T Consensus 171 PVf~Pa~~DssiG~~~~~~~~~~~~~~~~iD~~~D~~~l~~~~~~~~~~G~~~iGGGvpK~~~ 233 (299)
T PF01916_consen 171 PVFCPAITDSSIGLQLAMHRQKGKPSKLIIDIVADMRELADIVFKAKKTGAIIIGGGVPKHFI 233 (299)
T ss_dssp -EE-TTTTSSHHHHHHHHHHHHS-TT-----SHHHHHHHHHHHHT-SSEEEEEES-THHHHHH
T ss_pred CEECCCCcchHHHHHHHHHHHhcCCCceeecHHHHHHHHHHHHhhCCceeEEEECCchhHhHH
Confidence 89999999999999999999888 47999999999999999999999999999999999984
No 21
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=95.66 E-value=0.1 Score=54.43 Aligned_cols=138 Identities=17% Similarity=0.303 Sum_probs=91.9
Q ss_pred ccCCceEEEecccccchhhhHHHHHHHHHcCCccEEEeCCCchhHHHHHhhcCcccccccCCchhHHhcCccccccCCCC
Q psy4459 24 RKHNCTIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGGVEEDLIKCLAPSYVGDFQLDGKTLRDEGINRIDYGSEH 103 (400)
Q Consensus 24 ~~~~~~ifl~~tgnm~~aGlr~~i~~Li~~~~Vd~iVtTgg~lehDi~~~~~~~y~g~~~~dd~~L~~~ginRi~~~~~~ 103 (400)
|+.+.+|.+..-=+.+-+|-|..++.|||+||||++..==|--.|||=.++=.+=.| .+=-.
T Consensus 198 r~~gG~Iv~V~GPAvvhtga~~ala~Lir~GYV~~LlaGNAlAtHDiE~al~GTsLG-------------~di~~----- 259 (407)
T TIGR00300 198 RDKGGKIGVVAGPAVIHTGAAQALAHLIREGYVDALLAGNALAVHDIEQALYGTSLG-------------VDIQR----- 259 (407)
T ss_pred HHCCCCEEEEecCeEEecCcHHHHHHHHHcCcccEEecchHHHHhhhhHhhhCcccc-------------ccccc-----
Confidence 445777777777778899999999999999999999977777899999887443332 11001
Q ss_pred CCCCCCcccceeecCccHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHhcccCCCccHhHhhhhcCCCccCC-Ccc
Q psy4459 104 GKKGSHVSKVHAVPNDNYCAFENWLMPILDTMLREQKETGTVWTPSRIISRLGMEINHEDSICYWAAHNHIPIFSP-ALT 182 (400)
Q Consensus 104 ~~~~~~~~~d~~ip~e~~~~~E~~l~~il~~~~~~q~~~~~~~t~~e~~~~lGk~i~~e~Sil~wAyk~~vPif~P-a~~ 182 (400)
-..+|..+|.+++ .++++.+. | |..+++. +-.=.+.|.|.|.||+||..-- ++-
T Consensus 260 ---------~~~v~~GH~~Hl~-----~IN~irra----G---SI~~aVe----~G~l~~Gimy~cvk~~VPfVLAGSIR 314 (407)
T TIGR00300 260 ---------GIPVPGGHRHHLK-----AINSVRRA----G---GIRDAVE----QGIIKKGVMYECVKNNIPYVLAGSIR 314 (407)
T ss_pred ---------cccCCCchHHHHH-----HHHHHHHc----C---CHHHHHH----hCCCccchHHHHHhCCCCEEEeeecc
Confidence 2345667776654 34444221 1 3334443 2233579999999999995522 222
Q ss_pred -CCCccccceeecccCCCchhHHHHHHHHHhHhh
Q psy4459 183 -DGSLGDMMYFHSFRNPGLICDILQDLRRLNTMA 215 (400)
Q Consensus 183 -D~s~g~~l~~~~~~~~~l~iD~~~d~~~l~~~~ 215 (400)
|| ..|+++-|..+.-+++.+..
T Consensus 315 DDG-----------PLPdvitDv~~AQ~amR~~~ 337 (407)
T TIGR00300 315 DDG-----------PLPDVITDVVRAQSKMRELL 337 (407)
T ss_pred CCC-----------CCCcchhhHHHHHHHHHHHh
Confidence 44 34799999888776666553
No 22
>COG1915 Uncharacterized conserved protein [Function unknown]
Probab=88.72 E-value=0.98 Score=46.39 Aligned_cols=52 Identities=17% Similarity=0.300 Sum_probs=45.5
Q ss_pred ccCCceEEEecccccchhhhHHHHHHHHHcCCccEEEeCCCchhHHHHHhhc
Q psy4459 24 RKHNCTIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGGVEEDLIKCLA 75 (400)
Q Consensus 24 ~~~~~~ifl~~tgnm~~aGlr~~i~~Li~~~~Vd~iVtTgg~lehDi~~~~~ 75 (400)
++++.+|.+.--=+.+-+|-+..++.|||.||||++..--|--.|||--++-
T Consensus 197 ~~kgGkIvvv~GPaviHtg~~~~la~lIR~GyV~~L~~GNAlA~HDIE~~l~ 248 (415)
T COG1915 197 RDKGGKIVVVAGPAVIHTGAAQHLAHLIREGYVDALLAGNALAVHDIEQALM 248 (415)
T ss_pred HhcCCcEEEEecCeEEecCcHHHHHHHHHhhhHHHhhcCCceeechhHHHhh
Confidence 5678898888888899999999999999999999998777778899987763
No 23
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=57.96 E-value=8.8 Score=36.06 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=18.0
Q ss_pred hHHHHHHHHHcCCccEEEeCCCc
Q psy4459 43 VRETIKFLVQHKLVDAIVTTAGG 65 (400)
Q Consensus 43 lr~~i~~Li~~~~Vd~iVtTgg~ 65 (400)
++..+..++.++ +|+|+||||+
T Consensus 56 I~~~l~~~~~~~-~DvvlttGGT 77 (169)
T COG0521 56 IRATLIALIDED-VDVVLTTGGT 77 (169)
T ss_pred HHHHHHHHhcCC-CCEEEEcCCc
Confidence 455677777788 9999999997
No 24
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=56.73 E-value=8.7 Score=39.99 Aligned_cols=63 Identities=21% Similarity=0.174 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhHhhhhccccceeeecCcccCCCchHhhHhhhCCCc-eecC----CCCchhHhHHHHH
Q psy4459 202 CDILQDLRRLNTMAVKAVNTGMIILGGAEINHEDSICYWAAHNHIP-IFSP----ALTDGSLGDMMYF 264 (400)
Q Consensus 202 iD~~~d~~~l~~~~~~s~~~~~i~~~G~~i~~e~Sil~~A~k~~vP-Vf~P----a~~DgsiG~~l~~ 264 (400)
++.+..+...--..=-...+-+|.+|||+|..=.+.+.+.|..+|+ |.+| |-.|+|+|---..
T Consensus 77 l~~~~~i~~~ll~~~~~R~s~iialGGGvigDlaGF~Aaty~RGv~fiqiPTTLLAqVDSSVGGKtgI 144 (360)
T COG0337 77 LETLEKIYDALLEAGLDRKSTLIALGGGVIGDLAGFAAATYMRGVRFIQIPTTLLAQVDSSVGGKTGI 144 (360)
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHHHcCCCeEeccchHHHHhhccccccccc
Confidence 3555555544333344567788999999999999999999999999 4688 8889999965433
No 25
>PF04422 FrhB_FdhB_N: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; InterPro: IPR007516 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This entry contains the N termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The N terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the C terminus IPR007525 from INTERPRO.
Probab=49.76 E-value=19 Score=29.36 Aligned_cols=35 Identities=26% Similarity=0.488 Sum_probs=26.6
Q ss_pred HHHHHHHHcCCccEEEeCCCch-------------hHHHHHhhcCccc
Q psy4459 45 ETIKFLVQHKLVDAIVTTAGGV-------------EEDLIKCLAPSYV 79 (400)
Q Consensus 45 ~~i~~Li~~~~Vd~iVtTgg~l-------------ehDi~~~~~~~y~ 79 (400)
.++.+|+++|+||++|+++..= .+||+++-|..|.
T Consensus 25 aLl~~lLe~g~Vd~vv~~~~~~~~~~~~~~~i~~~~eel~~~aGSkY~ 72 (82)
T PF04422_consen 25 ALLAYLLESGLVDGVVVVGRDDDDPWRPEPVIATSPEELLKAAGSKYS 72 (82)
T ss_pred HHHHHHHHcCCceEEEEEeecCCCCcceEEEEECCHHHHHHHcCCcee
Confidence 4899999999999999998321 3677777665554
No 26
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=41.85 E-value=21 Score=36.83 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=37.6
Q ss_pred CceEEEecccccchhhhHHHH-----HHHHHcCCcc-----EEEeCCCchhHHHHHh
Q psy4459 27 NCTIFLGYTSNMVSSGVRETI-----KFLVQHKLVD-----AIVTTAGGVEEDLIKC 73 (400)
Q Consensus 27 ~~~ifl~~tgnm~~aGlr~~i-----~~Li~~~~Vd-----~iVtTgg~lehDi~~~ 73 (400)
+.+++..=+|++--++|..++ +.+++++.+| +|+.||||++.+...-
T Consensus 316 ~~~i~~epaga~~la~l~~~~~~~~~~~~~~~~~~~~~~~vvvi~t~gn~d~~~~~~ 372 (376)
T TIGR01747 316 DPRIISGESGAVGLGLLAAVMYHPQYQSLMEKLQLDKDAVVLVISTEGDTDPDHYRE 372 (376)
T ss_pred CCeEeeeCchHHHHHHHHHHHhCchHHHHHHHcCCCCCCEEEEEeCCCCCCHHHHHH
Confidence 678999999999988888655 3566676665 7999999999887654
No 27
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=41.79 E-value=24 Score=32.94 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=32.8
Q ss_pred eEEEecccccchhhhHHHHHHHHHcCC-ccEEEeCCCc
Q psy4459 29 TIFLGYTSNMVSSGVRETIKFLVQHKL-VDAIVTTAGG 65 (400)
Q Consensus 29 ~ifl~~tgnm~~aGlr~~i~~Li~~~~-Vd~iVtTgg~ 65 (400)
+|.|++||+.-.--.-++++.|.++|. |++|+|-.|.
T Consensus 3 ~Ill~vtGsiaa~~~~~li~~L~~~g~~V~vv~T~~A~ 40 (182)
T PRK07313 3 NILLAVSGSIAAYKAADLTSQLTKRGYQVTVLMTKAAT 40 (182)
T ss_pred EEEEEEeChHHHHHHHHHHHHHHHCCCEEEEEEChhHH
Confidence 689999999999888999999999885 8888888873
No 28
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=41.62 E-value=29 Score=28.48 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=37.7
Q ss_pred ceeecCccHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHhcccCCCccHhHhhh
Q psy4459 113 VHAVPNDNYCAFENWLMPILDTMLREQKETGTVWTPSRIISRLGMEINHEDSICYWAA 170 (400)
Q Consensus 113 d~~ip~e~~~~~E~~l~~il~~~~~~q~~~~~~~t~~e~~~~lGk~i~~e~Sil~wAy 170 (400)
-+++|.+.|.++++.+..+=+++ ..+.+|+..+.||++..+=.|+|-+.
T Consensus 6 ~viv~~~~~~~i~~rLd~iEeKv---------Ef~~~Ei~Qr~GkkiGRDiGIlYG~v 54 (70)
T PF04210_consen 6 QVIVDPDDFNEIMKRLDEIEEKV---------EFTNAEIAQRAGKKIGRDIGILYGLV 54 (70)
T ss_pred eeeeCHHHHHHHHHHHHHHHHHH---------HhHHHHHHHHHhHHhhhHHHHHHHHH
Confidence 46788889988776665554333 36779999999999999988888765
No 29
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=41.29 E-value=1.7e+02 Score=28.91 Aligned_cols=110 Identities=19% Similarity=0.282 Sum_probs=62.7
Q ss_pred EecccccchhhhHHHHHHHHHcCCccEEEeCCCchhHHHHHhhcC------cccccccCCchhHHhcCccccccCCCCCC
Q psy4459 32 LGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGGVEEDLIKCLAP------SYVGDFQLDGKTLRDEGINRIDYGSEHGK 105 (400)
Q Consensus 32 l~~tgnm~~aGlr~~i~~Li~~~~Vd~iVtTgg~lehDi~~~~~~------~y~g~~~~dd~~L~~~ginRi~~~~~~~~ 105 (400)
+++|| |..||=-.+-+.+.++| .-+.++=|..|-+=+..|++. .|.-.+..+|-+= .|.+|=-
T Consensus 3 I~i~G-~~gsGKstva~~~~~~g-~~~~~~~~d~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~g--~~~dre~------- 71 (227)
T PHA02575 3 IAISG-KKRSGKDTVADFIIENY-NAVKYQLADPIKEILAIAMGRYGADDLMFVPGLTYDDFDG--IGYDREA------- 71 (227)
T ss_pred EEEeC-CCCCCHHHHHHHHHhcC-CcEEEehhHHHHHHHHHHHHHhcccCccccCCcccccccC--cCccccC-------
Confidence 44444 55666555555554444 445477788888878777762 2222333333221 2555555
Q ss_pred CCCCcccceeecCcc-HHHHHHHHHHHHH------------HHHHHhhhcCCccchHHHHHHHhccc
Q psy4459 106 KGSHVSKVHAVPNDN-YCAFENWLMPILD------------TMLREQKETGTVWTPSRIISRLGMEI 159 (400)
Q Consensus 106 ~~~~~~~d~~ip~e~-~~~~E~~l~~il~------------~~~~~q~~~~~~~t~~e~~~~lGk~i 159 (400)
++.+.++. ...|+.++.-+-+ .+.+--...+.+||+++++..+|-++
T Consensus 72 -------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SiR~llQ~~GTd~ 131 (227)
T PHA02575 72 -------PLPLSNEDVIRIFEQALMLLNDKGTCYLLYAHYDKVYEIILNNNNPWSIRRLMQTLGTDI 131 (227)
T ss_pred -------CCcCCHHHHHHHHHHHHHHHhccccceeeecchHHHHHHHcCCCCCCCHHHHHHHhcCce
Confidence 87775544 5667766654422 22222223467899999999999664
No 30
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=40.40 E-value=26 Score=32.72 Aligned_cols=37 Identities=11% Similarity=0.044 Sum_probs=31.9
Q ss_pred eEEEecccccchhhhHHHHHHHHHcCC-ccEEEeCCCc
Q psy4459 29 TIFLGYTSNMVSSGVRETIKFLVQHKL-VDAIVTTAGG 65 (400)
Q Consensus 29 ~ifl~~tgnm~~aGlr~~i~~Li~~~~-Vd~iVtTgg~ 65 (400)
+|.|++||+.-.----++++.|.++|. |.+|+|-+|-
T Consensus 1 ~illgvtGsiaa~ka~~lir~L~~~g~~V~vv~T~~A~ 38 (181)
T TIGR00421 1 RIVVAMTGASGVIYGIRLLEVLKEAGVEVHLVISDWAK 38 (181)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECccHH
Confidence 488999998888777899999999985 8888888775
No 31
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=40.11 E-value=41 Score=27.78 Aligned_cols=49 Identities=18% Similarity=0.292 Sum_probs=35.9
Q ss_pred ceeecCccHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHhcccCCCccHhHhhh
Q psy4459 113 VHAVPNDNYCAFENWLMPILDTMLREQKETGTVWTPSRIISRLGMEINHEDSICYWAA 170 (400)
Q Consensus 113 d~~ip~e~~~~~E~~l~~il~~~~~~q~~~~~~~t~~e~~~~lGk~i~~e~Sil~wAy 170 (400)
-+++|.+.|.++-+.+.++=++. ..+..|+..++||++..+=.|+|-+.
T Consensus 9 ~v~v~~~dfne~~kRLdeieekv---------ef~~~Ev~Qr~GkkiGRDIGILYGlV 57 (75)
T COG4064 9 KVVVDPDDFNEIHKRLDEIEEKV---------EFVNGEVYQRIGKKIGRDIGILYGLV 57 (75)
T ss_pred ccccCHHHHHHHHHHHHHHHHHH---------HhhHHHHHHHHHHHhcchHHHHHHHH
Confidence 56788888876654444443222 36778999999999999989998875
No 32
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=38.54 E-value=26 Score=32.59 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=31.6
Q ss_pred eEEEecccccchhhhHHHHHHHHHcCC-ccEEEeCCCc
Q psy4459 29 TIFLGYTSNMVSSGVRETIKFLVQHKL-VDAIVTTAGG 65 (400)
Q Consensus 29 ~ifl~~tgnm~~aGlr~~i~~Li~~~~-Vd~iVtTgg~ 65 (400)
+|.|++||+.-.--.-++++.|.+.|. |++|+|..|.
T Consensus 2 ~I~lgvtGs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~ 39 (177)
T TIGR02113 2 KILLAVTGSIAAYKAADLTSQLTKLGYDVTVLMTQAAT 39 (177)
T ss_pred EEEEEEcCHHHHHHHHHHHHHHHHCCCEEEEEEChHHH
Confidence 589999998877777789999999886 8999988874
No 33
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=37.69 E-value=31 Score=32.77 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHcCCccEEEeCCCc
Q psy4459 42 GVRETIKFLVQHKLVDAIVTTAGG 65 (400)
Q Consensus 42 Glr~~i~~Li~~~~Vd~iVtTgg~ 65 (400)
-+++.|+.++++.-+|+||||||.
T Consensus 53 ~I~~aL~~a~~~~~~DlIITTGGt 76 (193)
T PRK09417 53 LIEQTLIELVDEMGCDLVLTTGGT 76 (193)
T ss_pred HHHHHHHHHhhcCCCCEEEECCCC
Confidence 356777777766668999999986
No 34
>TIGR00589 ogt O-6-methylguanine DNA methyltransferase. All proteins in this family for which functions are known are involved alkyl-DNA transferases which remove alkyl groups from DNA as part of alkylation DNA repair. Some of the proteins in this family are also transcription regulators and have a distinct transcription regulatory domain. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.59 E-value=88 Score=25.70 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhhcCCccchHHHHHHHhcccCCCccHhHhhhhcCCCccCCC----ccCCCccc
Q psy4459 128 LMPILDTMLREQKETGTVWTPSRIISRLGMEINHEDSICYWAAHNHIPIFSPA----LTDGSLGD 188 (400)
Q Consensus 128 l~~il~~~~~~q~~~~~~~t~~e~~~~lGk~i~~e~Sil~wAyk~~vPif~Pa----~~D~s~g~ 188 (400)
-+.+++.+.+ =.-|+..|-.++...+|.. ...+.|-.+..+|.+|+++|- =+||++|.
T Consensus 4 ~~~V~~~l~~--IP~G~v~TYg~iA~~~g~p-~~~RaVg~al~~np~~~~iPcHRVv~s~G~l~~ 65 (80)
T TIGR00589 4 QQRVWQALRT--IPYGETKSYGQLAARIGNP-KAVRAVGGANGRNPLAILVPCHRVIGKNGSLTG 65 (80)
T ss_pred HHHHHHHHhC--CCCCCcCCHHHHHHHhCCC-ChHHHHHHHHHhCCCCCCCCCceeECCCCCCCC
Confidence 3455555522 1236777888898888864 245788999999999999996 34888765
No 35
>PRK05920 aromatic acid decarboxylase; Validated
Probab=37.05 E-value=35 Score=32.76 Aligned_cols=38 Identities=16% Similarity=0.103 Sum_probs=32.5
Q ss_pred CceEEEecccccchhhhHHHHHHHHHcCC-ccEEEeCCC
Q psy4459 27 NCTIFLGYTSNMVSSGVRETIKFLVQHKL-VDAIVTTAG 64 (400)
Q Consensus 27 ~~~ifl~~tgnm~~aGlr~~i~~Li~~~~-Vd~iVtTgg 64 (400)
+-+|.|++||+.-.----++++.|++.|. |.+|+|-+|
T Consensus 3 ~krIllgITGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A 41 (204)
T PRK05920 3 MKRIVLAITGASGAIYGVRLLECLLAADYEVHLVISKAA 41 (204)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEEEChhH
Confidence 46799999998888766789999999985 888888876
No 36
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=37.01 E-value=32 Score=29.89 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=19.4
Q ss_pred hhhhHHHHHHHHHcCCccEEEeCCCc
Q psy4459 40 SSGVRETIKFLVQHKLVDAIVTTAGG 65 (400)
Q Consensus 40 ~aGlr~~i~~Li~~~~Vd~iVtTgg~ 65 (400)
..-+++.|..++++ .|+|+||||.
T Consensus 45 ~~~i~~~i~~~~~~--~DlvittGG~ 68 (133)
T cd00758 45 ADSIRAALIEASRE--ADLVLTTGGT 68 (133)
T ss_pred HHHHHHHHHHHHhc--CCEEEECCCC
Confidence 34577888888776 8999999986
No 37
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=34.90 E-value=70 Score=33.78 Aligned_cols=95 Identities=23% Similarity=0.403 Sum_probs=53.3
Q ss_pred hccCCc-eEEEecccccchhhhHHHHHHHHHcCCccEEEeCCCc--hhHHH----HH-hhcC-cccccccCCchhHHhcC
Q psy4459 23 VRKHNC-TIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGG--VEEDL----IK-CLAP-SYVGDFQLDGKTLRDEG 93 (400)
Q Consensus 23 ~~~~~~-~ifl~~tgnm~~aGlr~~i~~Li~~~~Vd~iVtTgg~--lehDi----~~-~~~~-~y~g~~~~dd~~L~~~g 93 (400)
.++.+| .++++...- =..-++++|+...+. .|+||||||. =+.|+ ++ .+|. .+.|-.--+++- .+
T Consensus 212 l~~~G~e~~~~giv~D-d~~~l~~~i~~a~~~--~DviItsGG~SvG~~D~v~~~l~~~lG~v~~~gia~kPGkP---~~ 285 (404)
T COG0303 212 LERAGGEVVDLGIVPD-DPEALREAIEKALSE--ADVIITSGGVSVGDADYVKAALERELGEVLFHGVAMKPGKP---TG 285 (404)
T ss_pred HHHcCCceeeccccCC-CHHHHHHHHHHhhhc--CCEEEEeCCccCcchHhHHHHHHhcCCcEEEEeeeecCCCc---eE
Confidence 344454 445544332 234567777777766 9999999997 23444 44 3443 333222223322 12
Q ss_pred ccccccCCCCCCCCCCcccce-ee-----cCccHHHHHHHHHHHHHHHHH
Q psy4459 94 INRIDYGSEHGKKGSHVSKVH-AV-----PNDNYCAFENWLMPILDTMLR 137 (400)
Q Consensus 94 inRi~~~~~~~~~~~~~~~d~-~i-----p~e~~~~~E~~l~~il~~~~~ 137 (400)
+-+++ +. ++ |-..+.-|+.|+.|++.++..
T Consensus 286 ~g~~~--------------~~~v~gLPGnPvSalv~f~~~v~p~l~~~~g 321 (404)
T COG0303 286 LGRLG--------------GKPVFGLPGNPVSALVNFELFVRPLLRKLLG 321 (404)
T ss_pred EEEEC--------------CcEEEECCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 33333 43 22 445578899999999988743
No 38
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=34.73 E-value=37 Score=29.61 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=18.3
Q ss_pred hhhhHHHHHHHHHcCCccEEEeCCCc
Q psy4459 40 SSGVRETIKFLVQHKLVDAIVTTAGG 65 (400)
Q Consensus 40 ~aGlr~~i~~Li~~~~Vd~iVtTgg~ 65 (400)
..-+.+.|...+++. |+||||||.
T Consensus 43 ~~~i~~~l~~~~~~~--D~VittGG~ 66 (144)
T PF00994_consen 43 PDAIKEALRRALDRA--DLVITTGGT 66 (144)
T ss_dssp HHHHHHHHHHHHHTT--SEEEEESSS
T ss_pred HHHHHHHHHhhhccC--CEEEEcCCc
Confidence 345667777777776 999999986
No 39
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=34.46 E-value=12 Score=36.98 Aligned_cols=43 Identities=26% Similarity=0.351 Sum_probs=34.4
Q ss_pred cccceeeecCcccCCCchHhhHhhhCCCc-eecC----CCCchhHhHH
Q psy4459 219 VNTGMIILGGAEINHEDSICYWAAHNHIP-IFSP----ALTDGSLGDM 261 (400)
Q Consensus 219 ~~~~~i~~~G~~i~~e~Sil~~A~k~~vP-Vf~P----a~~DgsiG~~ 261 (400)
..+-+|.+|||.+.+=-+.+.+.|..+|| |++| |..|+|+|--
T Consensus 29 R~~~iiaiGGGvv~Dl~GFaAs~y~RGi~~i~vPTTLLa~vDssiGgK 76 (260)
T PF01761_consen 29 RDDLIIAIGGGVVGDLAGFAASTYMRGIPFIQVPTTLLAQVDSSIGGK 76 (260)
T ss_dssp TTEEEEEEESHHHHHHHHHHHHHBTT--EEEEEE-SHHHHHTTTSSSE
T ss_pred CCCeEEEECChHHHHHHHHHHHHHccCCceEeccccHHHHHhcccCCC
Confidence 35678889999999988999999999999 4678 7889999754
No 40
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=33.51 E-value=44 Score=34.21 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=28.9
Q ss_pred ccccchhhhHHHHHHH--HHcCCccEEEeCCCchhH
Q psy4459 35 TSNMVSSGVRETIKFL--VQHKLVDAIVTTAGGVEE 68 (400)
Q Consensus 35 tgnm~~aGlr~~i~~L--i~~~~Vd~iVtTgg~leh 68 (400)
+.|....=|...-+.+ |++...|++|.|||.||+
T Consensus 77 ~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGAPvE~ 112 (300)
T TIGR01001 77 SKNTPIEHLNKFYTTFEAVKDRKFDGLIITGAPVEL 112 (300)
T ss_pred CCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCCCcCC
Confidence 4566777788877877 999999999999999985
No 41
>COG0350 Ada Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]
Probab=33.08 E-value=35 Score=31.58 Aligned_cols=51 Identities=20% Similarity=0.237 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhhhcCCccchHHHHHHHhcccCCCccHhHhhhhcCCCccCC
Q psy4459 126 NWLMPILDTMLREQKETGTVWTPSRIISRLGMEINHEDSICYWAAHNHIPIFSP 179 (400)
Q Consensus 126 ~~l~~il~~~~~~q~~~~~~~t~~e~~~~lGk~i~~e~Sil~wAyk~~vPif~P 179 (400)
.|-+.+|+.+.+= .-|...|=.|+.+++|++ ..-+.|-.++.+|-+||++|
T Consensus 88 ~Fq~~Vw~aL~~I--P~Get~TY~eiA~~ig~p-~a~rAVG~A~~~NPl~IiIP 138 (168)
T COG0350 88 GFQGRVWQALREI--PYGETVTYGEIARRLGRP-TAVRAVGNANGANPLPIIIP 138 (168)
T ss_pred hHHHHHHHHHhcC--CCCCcEeHHHHHHHhCCC-cHHHHHHHHhccCCceEEec
Confidence 4556778777321 236667889999999982 22356899999999999999
No 42
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=32.62 E-value=41 Score=29.02 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=17.9
Q ss_pred hhhhHHHHHHHHHcCCccEEEeCCCc
Q psy4459 40 SSGVRETIKFLVQHKLVDAIVTTAGG 65 (400)
Q Consensus 40 ~aGlr~~i~~Li~~~~Vd~iVtTgg~ 65 (400)
..-+++.|+.++++ .|+||||||.
T Consensus 44 ~~~I~~~l~~~~~~--~dliittGG~ 67 (135)
T smart00852 44 KEAIKEALREALER--ADLVITTGGT 67 (135)
T ss_pred HHHHHHHHHHHHhC--CCEEEEcCCC
Confidence 34466777777764 8999999985
No 43
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=32.60 E-value=1.4e+02 Score=33.86 Aligned_cols=57 Identities=19% Similarity=0.347 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhh--cCCccchHHHHHHHhcccCCCccHhHhhhhcCCCccCCCccCCCccccceeecccCCCchhHHHHH
Q psy4459 130 PILDTMLREQKE--TGTVWTPSRIISRLGMEINHEDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNPGLICDILQD 207 (400)
Q Consensus 130 ~il~~~~~~q~~--~~~~~t~~e~~~~lGk~i~~e~Sil~wAyk~~vPif~Pa~~D~s~g~~l~~~~~~~~~l~iD~~~d 207 (400)
++..++.+|-++ ....+|...+.+++||+|.++.-+..-|.+ -++-+|+|
T Consensus 488 dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~td----------------------------TIirQV~d 539 (712)
T COG5000 488 DVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTD----------------------------TIIRQVED 539 (712)
T ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHH----------------------------HHHHHHHH
Confidence 566677776554 122345578899999999987777777764 58888888
Q ss_pred HHHHhHh
Q psy4459 208 LRRLNTM 214 (400)
Q Consensus 208 ~~~l~~~ 214 (400)
|.|+-+.
T Consensus 540 I~rMVde 546 (712)
T COG5000 540 IKRMVDE 546 (712)
T ss_pred HHHHHHH
Confidence 8887654
No 44
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=31.67 E-value=47 Score=30.30 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHcCCccEEEeCCCc
Q psy4459 41 SGVRETIKFLVQHKLVDAIVTTAGG 65 (400)
Q Consensus 41 aGlr~~i~~Li~~~~Vd~iVtTgg~ 65 (400)
.-+++.|+.+++..-.|+|+||||.
T Consensus 49 ~~i~~~l~~~~~~~~~DlVIttGGt 73 (163)
T TIGR02667 49 YQIRAQVSAWIADPDVQVILITGGT 73 (163)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCc
Confidence 3456777777654569999999986
No 45
>PF00867 XPG_I: XPG I-region; InterPro: IPR006086 This entry represents endonucleases that cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Has 5'-endo-/exonuclease and 5'-pseudo-Y-endonuclease activities. Cleaves the junction between single and double-stranded regions of flap DNA. The endonuclease binds 2 magnesium ions per subunit. which probably participate in the reaction catalyzed by the enzyme. May bind an additional third magnesium ion after substrate binding.; GO: 0004518 nuclease activity, 0006281 DNA repair; PDB: 1UL1_Z 3Q8K_A 3Q8M_A 3Q8L_A 2IZO_A 1A77_A 1A76_A 3QEA_Z 3QE9_Y 3QEB_Z ....
Probab=31.64 E-value=38 Score=27.96 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=14.9
Q ss_pred HHHHHHHcCCccEEEeC
Q psy4459 46 TIKFLVQHKLVDAIVTT 62 (400)
Q Consensus 46 ~i~~Li~~~~Vd~iVtT 62 (400)
-+++|.++|+||+|+|.
T Consensus 17 q~A~L~~~g~vd~V~t~ 33 (94)
T PF00867_consen 17 QCAYLERNGLVDAVITE 33 (94)
T ss_dssp HHHHHHHTTSSSEEE-S
T ss_pred HHHHHHHhcceeEEEec
Confidence 57899999999999997
No 46
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=30.59 E-value=46 Score=31.82 Aligned_cols=40 Identities=25% Similarity=0.189 Sum_probs=32.4
Q ss_pred CCceEEEecccccchhh-hHHHHHHHHHcC-CccEEEeCCCc
Q psy4459 26 HNCTIFLGYTSNMVSSG-VRETIKFLVQHK-LVDAIVTTAGG 65 (400)
Q Consensus 26 ~~~~ifl~~tgnm~~aG-lr~~i~~Li~~~-~Vd~iVtTgg~ 65 (400)
.+.+|.|++||+.-.-- --++++.|.+.| -|.+|+|.+|-
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 35689999999887776 578899999998 57788887764
No 47
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=30.43 E-value=36 Score=36.47 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=36.8
Q ss_pred ccceeeecCcccCCCchHhhHhhhCCCc-eecC----CCCchhHhH
Q psy4459 220 NTGMIILGGAEINHEDSICYWAAHNHIP-IFSP----ALTDGSLGD 260 (400)
Q Consensus 220 ~~~~i~~~G~~i~~e~Sil~~A~k~~vP-Vf~P----a~~DgsiG~ 260 (400)
.+-+|.+|||.+-+=.+.+.+.|..||| |.+| |..|+|+|-
T Consensus 238 ~d~viaiGGG~v~D~agf~A~~y~RGi~~i~vPTTlla~vDssigg 283 (488)
T PRK13951 238 GKTIAGVGGGALTDFTGFVASTFKRGVGLSFYPTTLLAQVDASVGG 283 (488)
T ss_pred CCeEEEECChHHHHHHHHHHHHHhcCCCeEecCccHHHHHhcCCCC
Confidence 4678889999999999999999999999 5788 889999997
No 48
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=29.48 E-value=39 Score=33.06 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=19.0
Q ss_pred hhHhhhCCCceec-CCCCchhHhHHHHHhh
Q psy4459 238 CYWAAHNHIPIFS-PALTDGSLGDMMYFHS 266 (400)
Q Consensus 238 l~~A~k~~vPVf~-Pa~~DgsiG~~l~~~~ 266 (400)
..+|.++++||++ |-+ |+|.++++.-
T Consensus 111 ~~aA~~~g~~v~~a~Nf---SlGv~ll~~~ 137 (266)
T TIGR00036 111 ADLAEKAGIAAVIAPNF---SIGVNLMFKL 137 (266)
T ss_pred HHHHhcCCccEEEECcc---cHHHHHHHHH
Confidence 3446778899998 665 8888877644
No 49
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=29.32 E-value=64 Score=30.39 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=24.2
Q ss_pred HHHHHHHHcCCccEEEeCCCc--hhHHHHHhhcCc
Q psy4459 45 ETIKFLVQHKLVDAIVTTAGG--VEEDLIKCLAPS 77 (400)
Q Consensus 45 ~~i~~Li~~~~Vd~iVtTgg~--lehDi~~~~~~~ 77 (400)
++|..|.+.+ +.||+|||+ +.+--+++|..+
T Consensus 63 ~vl~~l~~~~--~~ViaTGGG~v~~~enr~~l~~~ 95 (172)
T COG0703 63 EVLKELLEED--NAVIATGGGAVLSEENRNLLKKR 95 (172)
T ss_pred HHHHHHhhcC--CeEEECCCccccCHHHHHHHHhC
Confidence 5889999988 799999999 446667777643
No 50
>KOG3349|consensus
Probab=28.84 E-value=40 Score=31.82 Aligned_cols=35 Identities=23% Similarity=0.498 Sum_probs=29.1
Q ss_pred cEEEeCCCchhHHHHHhhc-CcccccccCCchhHHhcCccccc
Q psy4459 57 DAIVTTAGGVEEDLIKCLA-PSYVGDFQLDGKTLRDEGINRID 98 (400)
Q Consensus 57 d~iVtTgg~lehDi~~~~~-~~y~g~~~~dd~~L~~~ginRi~ 98 (400)
.+.||-|.+...|+++|.- +-++ .+|.++|++|+-
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~-------~~L~k~G~~kLi 40 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFL-------QELQKRGFTKLI 40 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHH-------HHHHHcCccEEE
Confidence 5789999999999999984 4444 589999999986
No 51
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=28.77 E-value=1.8e+02 Score=27.91 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=24.9
Q ss_pred eEEEecccccchhhhHHHHHHHHHcCCccEEEeCCCc
Q psy4459 29 TIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGG 65 (400)
Q Consensus 29 ~ifl~~tgnm~~aGlr~~i~~Li~~~~Vd~iVtTgg~ 65 (400)
++|+++.= -+++-++.+.|.+.|+ -|++|+|+
T Consensus 2 ~vLISVsD---K~~l~~lAk~L~~lGf--~I~AT~GT 33 (187)
T cd01421 2 RALISVSD---KTGLVEFAKELVELGV--EILSTGGT 33 (187)
T ss_pred EEEEEEeC---cccHHHHHHHHHHCCC--EEEEccHH
Confidence 46777764 7888899999999987 46788775
No 52
>PF14367 DUF4411: Domain of unknown function (DUF4411)
Probab=28.73 E-value=2.4e+02 Score=25.63 Aligned_cols=60 Identities=25% Similarity=0.506 Sum_probs=36.9
Q ss_pred ceeecCccHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHhcccCCCccHhHhhhhcCCCccCCCccC
Q psy4459 113 VHAVPNDNYCAFENWLMPILDTMLREQKETGTVWTPSRIISRLGMEINHEDSICYWAAHNHIPIFSPALTD 183 (400)
Q Consensus 113 d~~ip~e~~~~~E~~l~~il~~~~~~q~~~~~~~t~~e~~~~lGk~i~~e~Sil~wAyk~~vPif~Pa~~D 183 (400)
+.+.|.+-+..|-+||.... +.+...++.+...+|-+. ++.+..|+..+..+.+.+...|
T Consensus 13 ~~yY~~d~~p~fW~~L~~~~--------~~g~i~~~~~V~~El~~~---~d~l~~W~k~~~~~~~~~~~~d 72 (162)
T PF14367_consen 13 NRYYPFDIFPSFWDWLEQLI--------ESGRIISPDEVYDELERG---DDELAKWAKNNEPKFFFFSTDD 72 (162)
T ss_pred HhcCCchHHHHHHHHHHHHH--------hCCeEeehHHHHHHHhhC---ChhHHHHHHhCCccccccCCCh
Confidence 33445444444444444333 247788999999998875 5677899987766544443333
No 53
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=28.07 E-value=44 Score=31.52 Aligned_cols=37 Identities=8% Similarity=0.091 Sum_probs=32.3
Q ss_pred eEEEecccccchhhhHHHHHHHHHc-C-CccEEEeCCCc
Q psy4459 29 TIFLGYTSNMVSSGVRETIKFLVQH-K-LVDAIVTTAGG 65 (400)
Q Consensus 29 ~ifl~~tgnm~~aGlr~~i~~Li~~-~-~Vd~iVtTgg~ 65 (400)
+|.|++||+.-.-.--++++.|.++ | -|.+|.|.+|-
T Consensus 3 ~IllgVTGsiaa~ka~~l~~~L~k~~g~~V~vv~T~~A~ 41 (185)
T PRK06029 3 RLIVGISGASGAIYGVRLLQVLRDVGEIETHLVISQAAR 41 (185)
T ss_pred EEEEEEECHHHHHHHHHHHHHHHhhcCCeEEEEECHHHH
Confidence 6899999998888888999999994 6 59999999885
No 54
>KOG4062|consensus
Probab=27.39 E-value=44 Score=31.66 Aligned_cols=53 Identities=23% Similarity=0.289 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCCccchHHHHHHHhcccCCCccHhHhhhhcCCCccCC
Q psy4459 124 FENWLMPILDTMLREQKETGTVWTPSRIISRLGMEINHEDSICYWAAHNHIPIFSP 179 (400)
Q Consensus 124 ~E~~l~~il~~~~~~q~~~~~~~t~~e~~~~lGk~i~~e~Sil~wAyk~~vPif~P 179 (400)
-++|-+.+|+.+.+-. .|...|-+++.+++|++- .-+.|-.++.+|+.||.+|
T Consensus 87 ~t~F~~kVw~al~~i~--~Gev~tY~~iA~~iG~Ps-aaRaVg~A~~~n~la~lvP 139 (178)
T KOG4062|consen 87 GTDFQRKVWDALCEIP--YGEVSTYGQIARRIGNPS-AARAVGSAMAHNNLAILVP 139 (178)
T ss_pred cchHHHHHHHHHhccC--CCceeeHHHHHHHhCCcH-HHHHHHHHHccCCCcEEec
Confidence 3556677888876532 467788899999999863 3478899999999999998
No 55
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=26.86 E-value=59 Score=27.18 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=35.1
Q ss_pred ceeecCccHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHhcccCCCccHhHhhh
Q psy4459 113 VHAVPNDNYCAFENWLMPILDTMLREQKETGTVWTPSRIISRLGMEINHEDSICYWAA 170 (400)
Q Consensus 113 d~~ip~e~~~~~E~~l~~il~~~~~~q~~~~~~~t~~e~~~~lGk~i~~e~Sil~wAy 170 (400)
-+++|.+.|.++-+.+.++=++. ..+.+|+..+.||++..+=.|+|-+.
T Consensus 9 ~viv~~~d~~~i~~rLD~iEeKV---------Eftn~Ei~Qr~GkkvGRDiGIlYG~v 57 (77)
T PRK01026 9 QVVVDPKDFKEIQKRLDEIEEKV---------EFTNAEIFQRIGKKVGRDIGILYGLV 57 (77)
T ss_pred eeecCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHHhhhHHHHHHHHH
Confidence 46678787766554444332222 36789999999999999988888765
No 56
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=25.15 E-value=68 Score=26.37 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=34.9
Q ss_pred ceeecCccHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHhcccCCCccHhHhhh
Q psy4459 113 VHAVPNDNYCAFENWLMPILDTMLREQKETGTVWTPSRIISRLGMEINHEDSICYWAA 170 (400)
Q Consensus 113 d~~ip~e~~~~~E~~l~~il~~~~~~q~~~~~~~t~~e~~~~lGk~i~~e~Sil~wAy 170 (400)
-+++|...|.++-+.+..+=++. ..+.+|+..+.||++..+=.|+|-+.
T Consensus 6 ~v~v~~~d~~~i~~rLd~iEeKV---------Ef~~~E~~Qr~Gkk~GRDiGIlYG~v 54 (70)
T TIGR01149 6 AVFVEPDEFNEVMKRLDEIEEKV---------EFVNGEVAQRIGKKVGRDIGILYGLV 54 (70)
T ss_pred eeecCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHHhhhHHHHHHHHH
Confidence 56778888766554443332222 36789999999999999888888765
No 57
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=23.86 E-value=71 Score=33.42 Aligned_cols=48 Identities=27% Similarity=0.349 Sum_probs=38.0
Q ss_pred CceEEEecccccchhhhHHHHHHHHHcCC-ccEEEeCCCc--hhHHHHHhh
Q psy4459 27 NCTIFLGYTSNMVSSGVRETIKFLVQHKL-VDAIVTTAGG--VEEDLIKCL 74 (400)
Q Consensus 27 ~~~ifl~~tgnm~~aGlr~~i~~Li~~~~-Vd~iVtTgg~--lehDi~~~~ 74 (400)
+-+|.|++||+.-.--.-++++.|.++|. |.+|+|-+|- +....++.+
T Consensus 3 ~k~IllgiTGSiaa~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~~~l~~~ 53 (390)
T TIGR00521 3 NKKILLGVTGGIAAYKTVELVRELVRQGAEVKVIMTEAAKKFITPLTLEAL 53 (390)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHHHHHHHHh
Confidence 56799999999888888899999999886 8888888874 444444444
No 58
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=21.16 E-value=84 Score=30.18 Aligned_cols=37 Identities=27% Similarity=0.209 Sum_probs=30.5
Q ss_pred eEEEecccccchh-hhHHHHHHHHHc--CC-ccEEEeCCCc
Q psy4459 29 TIFLGYTSNMVSS-GVRETIKFLVQH--KL-VDAIVTTAGG 65 (400)
Q Consensus 29 ~ifl~~tgnm~~a-Glr~~i~~Li~~--~~-Vd~iVtTgg~ 65 (400)
+|.+++||+-.+. ..=++++.|+++ |. |++|+|-+|-
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~ 41 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGE 41 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHH
Confidence 5789999976664 666899999998 76 9999998875
No 59
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=21.06 E-value=1.7e+02 Score=26.04 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=36.5
Q ss_pred cCCce-EEEecccccchhhhHHHHHHHHHcCCccEEEeCCCchhHHHHHhhcCcccccccCCchhHHhcCccccc
Q psy4459 25 KHNCT-IFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGGVEEDLIKCLAPSYVGDFQLDGKTLRDEGINRID 98 (400)
Q Consensus 25 ~~~~~-ifl~~tgnm~~aGlr~~i~~Li~~~~Vd~iVtTgg~lehDi~~~~~~~y~g~~~~dd~~L~~~ginRi~ 98 (400)
..++. |.+|+...-....+++++..|-+.++=|..|--||++.-+ .+++..+-.+|++.|+.+++
T Consensus 52 ~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~---------~~~~~~~~~~l~~~G~~~vf 117 (137)
T PRK02261 52 ETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVG---------KHDFEEVEKKFKEMGFDRVF 117 (137)
T ss_pred HcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCC---------ccChHHHHHHHHHcCCCEEE
Confidence 34443 3444444444456778888887777767777777776310 11122233467777774444
No 60
>PF14370 Topo_C_assoc: C-terminal topoisomerase domain; PDB: 1TL8_A 1K4T_A 1A36_A 1RR8_C 1T8I_A 1SC7_A 1EJ9_A 1LPQ_A 1RRJ_A 1A31_A ....
Probab=21.03 E-value=1.3e+02 Score=24.89 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=18.9
Q ss_pred cCCccchHHHHHHHhcccCCCccHhHhhhhcCCCc
Q psy4459 142 TGTVWTPSRIISRLGMEINHEDSICYWAAHNHIPI 176 (400)
Q Consensus 142 ~~~~~t~~e~~~~lGk~i~~e~Sil~wAyk~~vPi 176 (400)
....+.+|.+-| | +++=-++||.+++|||
T Consensus 19 K~vaLgTSKiNY-----l-DPRItvAWck~~~VPi 47 (71)
T PF14370_consen 19 KTVALGTSKINY-----L-DPRITVAWCKRHEVPI 47 (71)
T ss_dssp SCE-SHHHHHHT-----S--HHHHHHHHHHTT--G
T ss_pred ceeecchhhhhh-----c-CcHHHHHHHHHhCCcH
Confidence 455677888775 3 4566789999999996
No 61
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=20.86 E-value=78 Score=32.93 Aligned_cols=43 Identities=23% Similarity=0.293 Sum_probs=34.1
Q ss_pred cccceeeecCcccCCCchHhhHhhhCCCc-eecC----CCCchhHhHH
Q psy4459 219 VNTGMIILGGAEINHEDSICYWAAHNHIP-IFSP----ALTDGSLGDM 261 (400)
Q Consensus 219 ~~~~~i~~~G~~i~~e~Sil~~A~k~~vP-Vf~P----a~~DgsiG~~ 261 (400)
..+-+|.+|||.+-.=...+.+-|..++| |.+| +..|+++|.-
T Consensus 99 r~~~IIalGGG~v~D~ag~vA~~~~rGip~I~IPTTlla~vDs~~g~k 146 (369)
T cd08198 99 RHSYVIAIGGGAVLDAVGYAAATAHRGVRLIRIPTTVLAQNDSGVGVK 146 (369)
T ss_pred cCcEEEEECChHHHHHHHHHHHHhcCCCCEEEECCCchhhhCCCeeee
Confidence 34578899999988877777766888999 7788 5678888765
No 62
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=20.76 E-value=1.9e+02 Score=30.95 Aligned_cols=119 Identities=24% Similarity=0.302 Sum_probs=69.7
Q ss_pred CCccccceeecc--cCCCchhHHHHHHHHHhHhhhhccccceeeecCcccCCCchHhhHhhhCCCceecCCCCchhHhHH
Q psy4459 184 GSLGDMMYFHSF--RNPGLICDILQDLRRLNTMAVKAVNTGMIILGGAEINHEDSICYWAAHNHIPIFSPALTDGSLGDM 261 (400)
Q Consensus 184 ~s~g~~l~~~~~--~~~~l~iD~~~d~~~l~~~~~~s~~~~~i~~~G~~i~~e~Sil~~A~k~~vPVf~Pa~~DgsiG~~ 261 (400)
-|||-.++--.. .+..=.+|++-.+++--+++. +..+|.+ .++++|+|-|||||..--|
T Consensus 251 TsLG~di~~~~~v~~GH~~Hl~~IN~irraGSI~~-aVe~G~l---------~~Gimy~cvk~~VPfVLAG--------- 311 (407)
T TIGR00300 251 TSLGVDIQRGIPVPGGHRHHLKAINSVRRAGGIRD-AVEQGII---------KKGVMYECVKNNIPYVLAG--------- 311 (407)
T ss_pred ccccccccccccCCCchHHHHHHHHHHHHcCCHHH-HHHhCCC---------ccchHHHHHhCCCCEEEee---------
Confidence 467777665533 556778999999998777753 3344433 5689999999999986554
Q ss_pred HHHhhhcCCcceeeHHHHHHHHHH-HHhhcccceeEEecCccchhhhhhhcccc-cCcceEEEeccC
Q psy4459 262 MYFHSFRNPGLICDILQDLRRLNT-MAVKAVNTGMIILGGGVIKHHICNANLMR-NGADYAVFINTG 326 (400)
Q Consensus 262 l~~~~~~~~~l~~D~~~D~~~l~~-~~~~s~~~G~iilGGGv~Kh~i~~a~l~r-~g~dyav~itta 326 (400)
+.|+.|--.|.+.|+.+=-+ |....++.++++-=+ -.=|-|.-.|+.= .-.-|+|=||.+
T Consensus 312 ----SIRDDGPLPdvitDv~~AQ~amR~~~~~a~~vimla-TmLHSIAtGNm~Ps~v~~~cVDInp~ 373 (407)
T TIGR00300 312 ----SIRDDGPLPDVITDVVRAQSKMRELLQGADMVLMLS-TMLHSIAVGNLLPSGVKTICVDINPA 373 (407)
T ss_pred ----eccCCCCCCcchhhHHHHHHHHHHHhccCCeehhHH-HHHHHHhhcccccccceEEEEECCHH
Confidence 23444555677766655333 223356666654311 1112233334322 124577777654
No 63
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=20.16 E-value=2e+02 Score=31.57 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHcCCccEEEeCCCc------hhHHHHHhhcC
Q psy4459 41 SGVRETIKFLVQHKLVDAIVTTAGG------VEEDLIKCLAP 76 (400)
Q Consensus 41 aGlr~~i~~Li~~~~Vd~iVtTgg~------lehDi~~~~~~ 76 (400)
.-+++.|..+++ -.|+||||||. +-.++++.++.
T Consensus 240 ~~i~~~l~~~~~--~~D~iIttGG~s~g~~D~~~~~l~~~g~ 279 (633)
T PRK14498 240 EELEAALRKALK--ECDLVLLSGGTSAGAGDVTYRVIEELGE 279 (633)
T ss_pred HHHHHHHHHHHh--cCCEEEECCCCcCCCcccHHHHHHhcCC
Confidence 446677777765 48999999996 34455555553
No 64
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=20.08 E-value=1e+02 Score=27.42 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHcCCccEEEeCCCc
Q psy4459 41 SGVRETIKFLVQHKLVDAIVTTAGG 65 (400)
Q Consensus 41 aGlr~~i~~Li~~~~Vd~iVtTgg~ 65 (400)
.-+.+.|+.+.++.-.|.||||||.
T Consensus 47 ~~i~~~l~~~~~~~~~DlVittGG~ 71 (152)
T cd00886 47 DEIREALIEWADEDGVDLILTTGGT 71 (152)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCc
Confidence 4466777777774359999999986
Done!