RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4459
(400 letters)
>gnl|CDD|145208 pfam01916, DS, Deoxyhypusine synthase. Eukaryotic initiation
factor 5A (eIF-5A) contains an unusual amino acid,
hypusine [N epsilon-(4-aminobutyl-2-hydroxy)lysine]. The
first step in the post-translational formation of
hypusine is catalyzed by the enzyme deoxyhypusine
synthase (DS) EC:1.1.1.249. The modified version of
eIF-5A, and DS, are required for eukaryotic cell
proliferation.
Length = 297
Score = 279 bits (716), Expect = 2e-92
Identities = 122/206 (59%), Positives = 151/206 (73%), Gaps = 14/206 (6%)
Query: 28 CTIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGGVEEDLIKCLAPSYVGDFQLDGK 87
TIFLGYTSN++SSG+RE I++LVQHK + A+VTTAGGVEEDLIKCL P+Y+GDF++D K
Sbjct: 38 ITIFLGYTSNLISSGMREIIRYLVQHKKISALVTTAGGVEEDLIKCLGPTYLGDFEVDDK 97
Query: 88 TLRDEGINRIDYGSEHGKKGSHVSKVHAVPNDNYCAFENWLMPILDTMLREQKETGTVWT 147
LR+EGINRI G+ VPN+NY AFE WLMPI + ML EQ++ G +WT
Sbjct: 98 ELREEGINRI---------GNVF-----VPNENYEAFEEWLMPIFEKMLEEQEKEGKIWT 143
Query: 148 PSRIISRLGMEINHEDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNPGLICDILQD 207
PS I LG EIN E S+ YWA N+IPIF PALTDGSLGDM+YF++ +NP L DI+ D
Sbjct: 144 PSEFIHELGKEINDERSVLYWAHKNNIPIFCPALTDGSLGDMLYFYTKKNPKLRIDIVND 203
Query: 208 LRRLNTMAVKAVNTGMIILGGAEINH 233
+R++N +A A TGMIILGG H
Sbjct: 204 IRKINDLAFSAKRTGMIILGGGLPKH 229
Score = 212 bits (542), Expect = 2e-66
Identities = 83/137 (60%), Positives = 99/137 (72%)
Query: 228 GAEINHEDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMA 287
G EIN E S+ YWA N+IPIF PALTDGSLGDM+YF++ +NP L DI+ D+R++N +A
Sbjct: 152 GKEINDERSVLYWAHKNNIPIFCPALTDGSLGDMLYFYTKKNPKLRIDIVNDIRKINDLA 211
Query: 288 VKAVNTGMIILGGGVIKHHICNANLMRNGADYAVFINTGVEYDGSDSGARPDEAKSWGKI 347
A TGMIILGGG+ KHHI NANL+RNGADYAV+I T +DGS SGA P+EA SWGKI
Sbjct: 212 FSAKRTGMIILGGGLPKHHILNANLLRNGADYAVYITTAQPWDGSLSGAPPEEAVSWGKI 271
Query: 348 KREARPVKRNGADYAVF 364
K A V G F
Sbjct: 272 KAGADAVTVYGDATIAF 288
>gnl|CDD|232918 TIGR00321, dhys, deoxyhypusine synthase. Deoxyhypusine synthase is
responsible for the first step in creating hypusine.
Hypusine is a modified amino acid found in eukaryotes
and in archaea in their respective forms of initiation
factor 5A. Its presence is confirmed in archaeal genera
Pyrococcus (PMID:12761201), Sulfolobus, Halobacterium,
and Haloferax (PMID:10648545), but in an older report
was not detected in Methanococcus voltae (J Biol Chem
1987 Dec 5;262(34):16585-9). This family of apparent
orthologs has an unusual UPGMA difference tree, in which
the members from the archaea M. jannaschii and P.
horikoshii cluster with the known eukaryotic
deoxyhypusine synthases. Separated by a fairly deep
branch, although still strongly related, is a small
cluster of proteins from Methanobacterium
thermoautotrophicum and Archeoglobus fulgidus, the
latter of which has two [Protein fate, Protein
modification and repair].
Length = 301
Score = 217 bits (555), Expect = 3e-68
Identities = 93/213 (43%), Positives = 127/213 (59%), Gaps = 20/213 (9%)
Query: 22 IVRKHNCTIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGGVEEDLIKCLAPSYVGD 81
+ TIF+GY N+V SG+RE I +L+QH ++DA+VTT +E DLI+ L P+++GD
Sbjct: 40 MCFDEEITIFMGYAGNLVPSGMREIIAYLIQHGMIDALVTTGANLEHDLIEALGPTHLGD 99
Query: 82 FQLDGKTLRDEGINRIDYGSEHGKKGSHVSKVHAVPNDNYCAFENWLMPILDTMLREQKE 141
F +D K LR+EGINRI V VPN+N+ FE WL+ I ML EQ
Sbjct: 100 FAVDDKKLREEGINRI-------------GDVF-VPNENFEVFEEWLVEIFSEMLGEQP- 144
Query: 142 TGTVWTPSRIISRLGMEIN-HEDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNPGL 200
+ TPS I +G IN SI Y A IPIF PALTD S+G M++F++ +N L
Sbjct: 145 ---IITPSEFIDEIGKRINDKRSSIRYAAYKRKIPIFCPALTDSSIGLMLFFYTKKNS-L 200
Query: 201 ICDILQDLRRLNTMAVKAVNTGMIILGGAEINH 233
DI++D+R+LN + + TG+IILGG H
Sbjct: 201 RIDIVRDIRKLNDIVFNSERTGVIILGGGLPKH 233
Score = 171 bits (435), Expect = 2e-50
Identities = 68/138 (49%), Positives = 86/138 (62%), Gaps = 2/138 (1%)
Query: 228 GAEIN-HEDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTM 286
G IN SI Y A IPIF PALTD S+G M++F++ +N L DI++D+R+LN +
Sbjct: 156 GKRINDKRSSIRYAAYKRKIPIFCPALTDSSIGLMLFFYTKKNS-LRIDIVRDIRKLNDI 214
Query: 287 AVKAVNTGMIILGGGVIKHHICNANLMRNGADYAVFINTGVEYDGSDSGARPDEAKSWGK 346
+ TG+IILGGG+ KH I NA L+R GADYAV I T DGS SGA +EA SWGK
Sbjct: 215 VFNSERTGVIILGGGLPKHFILNACLLREGADYAVQITTDQPQDGSLSGAPLEEAVSWGK 274
Query: 347 IKREARPVKRNGADYAVF 364
IK +A+ V G
Sbjct: 275 IKAKAKSVTVFGDATIAL 292
>gnl|CDD|179688 PRK03971, PRK03971, putative deoxyhypusine synthase; Provisional.
Length = 334
Score = 214 bits (547), Expect = 1e-66
Identities = 100/215 (46%), Positives = 131/215 (60%), Gaps = 26/215 (12%)
Query: 29 TIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGGVEEDLIKCLAPSYVGDFQLDGKT 88
T+FLGYTSN+VSSG+RE I +LV+ K VD IVTTAGGVEED IKCL P +G++ +DG
Sbjct: 68 TVFLGYTSNIVSSGLREIIAYLVKEKKVDVIVTTAGGVEEDFIKCLKPFILGEWDVDGAE 127
Query: 89 LRDEGINRIDYGSEHGKKGSHVSKVHAVPNDNYCAFENWLMPILDTMLREQKETGTVWTP 148
LR++GINRI G+ VPND Y FE ++ + +L +Q+E G + T
Sbjct: 128 LREKGINRI--GNIF------------VPNDRYIEFEEYMYEFFEELLAKQREEGKIITA 173
Query: 149 SRIISRLG------MEINHEDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNPG--- 199
S LG + E SI YWA N+IPIF PA+TDGS+GDM+YF F+ G
Sbjct: 174 SEFCYELGRFMDEKLGKEKEKSILYWAYKNNIPIFCPAITDGSIGDMLYF--FKKEGKDS 231
Query: 200 -LICDILQDLRRLNTMAVKAVNTGMIILGGAEINH 233
L DI D+ +LN +A+ A T I+LGG+ H
Sbjct: 232 ELGIDIANDIVKLNDLAITAKETACIVLGGSLPKH 266
Score = 164 bits (416), Expect = 2e-47
Identities = 66/122 (54%), Positives = 83/122 (68%), Gaps = 6/122 (4%)
Query: 234 EDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNPG----LICDILQDLRRLNTMAVK 289
E SI YWA N+IPIF PA+TDGS+GDM+YF F+ G L DI D+ +LN +A+
Sbjct: 193 EKSILYWAYKNNIPIFCPAITDGSIGDMLYF--FKKEGKDSELGIDIANDIVKLNDLAIT 250
Query: 290 AVNTGMIILGGGVIKHHICNANLMRNGADYAVFINTGVEYDGSDSGARPDEAKSWGKIKR 349
A T I+LGG + KH I NANL R G DYA++I T + +DGS SGA P+E SWGKIK
Sbjct: 251 AKETACIVLGGSLPKHSIINANLFRGGTDYAIYITTAMPWDGSLSGAPPEEGVSWGKIKA 310
Query: 350 EA 351
+A
Sbjct: 311 KA 312
>gnl|CDD|224811 COG1899, DYS1, Deoxyhypusine synthase [Posttranslational
modification, protein turnover, chaperones].
Length = 318
Score = 211 bits (540), Expect = 9e-66
Identities = 89/214 (41%), Positives = 122/214 (57%), Gaps = 21/214 (9%)
Query: 23 VRKHNCTIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGGVEEDLIKCL-APSYVGD 81
+ + T+FLG T N+VSSG+RE I L+++ L+D +VTT G ++ D+IK L P Y G
Sbjct: 50 MLESRVTVFLGLTGNLVSSGLREIIADLIRNGLIDVVVTTGGNLDHDIIKALGGPHYCGS 109
Query: 82 FQLDGKTLRDEGINRIDYGSEHGKKGSHVSKVHAVPNDNYCAFENWLMPILDTMLREQKE 141
F++D LR+EGINRI V VPN+ Y FE ++ IL+ +L +KE
Sbjct: 110 FEVDDVELREEGINRI-------------GNVF-VPNEEYEVFEEFIREILEKLLGIKKE 155
Query: 142 TGTVWTPSRIISRLGMEINH-EDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFR-NPG 199
W+ I LG +N E SI Y AA N +PIF PA+TD S+GDM++FH
Sbjct: 156 ----WSTREFIYELGKRLNDDESSILYTAAKNGVPIFCPAITDSSIGDMLWFHREEQGSD 211
Query: 200 LICDILQDLRRLNTMAVKAVNTGMIILGGAEINH 233
L DI++D+ LN + A TG IILGG H
Sbjct: 212 LKIDIVEDVHELNDIVFNAEKTGAIILGGGVPKH 245
Score = 183 bits (468), Expect = 5e-55
Identities = 71/130 (54%), Positives = 84/130 (64%), Gaps = 2/130 (1%)
Query: 228 GAEINH-EDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFR-NPGLICDILQDLRRLNT 285
G +N E SI Y AA N +PIF PA+TD S+GDM++FH L DI++D+ LN
Sbjct: 166 GKRLNDDESSILYTAAKNGVPIFCPAITDSSIGDMLWFHREEQGSDLKIDIVEDVHELND 225
Query: 286 MAVKAVNTGMIILGGGVIKHHICNANLMRNGADYAVFINTGVEYDGSDSGARPDEAKSWG 345
+ A TG IILGGGV KHHI ANL R G DYAV I T YDGS SGA P+EA SWG
Sbjct: 226 IVFNAEKTGAIILGGGVPKHHIIQANLFRGGLDYAVQITTARPYDGSLSGATPEEAVSWG 285
Query: 346 KIKREARPVK 355
KIK +A+ V
Sbjct: 286 KIKPDAKYVT 295
>gnl|CDD|234922 PRK01221, PRK01221, putative deoxyhypusine synthase; Provisional.
Length = 312
Score = 142 bits (361), Expect = 2e-39
Identities = 57/127 (44%), Positives = 77/127 (60%)
Query: 228 GAEINHEDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMA 287
G IN E+SI A +P+F P + DG+ G ++ S R G ++L+D L+ +
Sbjct: 167 GKRINDENSILRAAYEKGVPVFVPGIVDGAFGTQLFTFSQRFGGFKINLLEDEELLSDLV 226
Query: 288 VKAVNTGMIILGGGVIKHHICNANLMRNGADYAVFINTGVEYDGSDSGARPDEAKSWGKI 347
+ G +I+GGG+ KHH N ++G DYAV+I T VEYDGS SGARP EA SWGKI
Sbjct: 227 FSSKKLGALIIGGGISKHHTIWWNQFKDGLDYAVYITTAVEYDGSLSGARPREAISWGKI 286
Query: 348 KREARPV 354
K EA+ V
Sbjct: 287 KPEAKHV 293
Score = 125 bits (316), Expect = 5e-33
Identities = 55/202 (27%), Positives = 103/202 (50%), Gaps = 20/202 (9%)
Query: 29 TIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGGVEEDLIKCL-APSYVGDFQLDGK 87
FL +T+N+VS+G+R I L++ L + ++TT G ++ D+ + Y G F +D
Sbjct: 56 LRFLSFTANLVSTGLRGLIADLIKRGLFNVVITTCGTLDHDIARSFGGVYYKGSFDIDDA 115
Query: 88 TLRDEGINRIDYGSEHGKKGSHVSKVHAVPNDNY-CAFENWLMPILDTMLREQKETGTVW 146
L+D GI+R+ G+ + +P ++Y E ++ L+ + +++KE W
Sbjct: 116 MLKDLGIHRL---------GNVL-----IPVESYGPLIEKFVRKFLEELYKDKKE----W 157
Query: 147 TPSRIISRLGMEINHEDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNPGLICDILQ 206
+ ++ G IN E+SI A +P+F P + DG+ G ++ S R G ++L+
Sbjct: 158 STYELLWEFGKRINDENSILRAAYEKGVPVFVPGIVDGAFGTQLFTFSQRFGGFKINLLE 217
Query: 207 DLRRLNTMAVKAVNTGMIILGG 228
D L+ + + G +I+GG
Sbjct: 218 DEELLSDLVFSSKKLGALIIGG 239
>gnl|CDD|234841 PRK00805, PRK00805, putative deoxyhypusine synthase; Provisional.
Length = 329
Score = 87.4 bits (217), Expect = 3e-19
Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 22/210 (10%)
Query: 22 IVRKHNCTIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGGVEEDLIKCLAPS-YVG 80
+++ + TIF+G + MV +G+R+ IK+L++++ VD +V+T + D+ + L Y G
Sbjct: 41 MLKDPDNTIFMGLSGAMVPAGMRKIIKWLIRNRYVDVLVSTGANIFHDIHEALGFKHYKG 100
Query: 81 DFQLDGKTLRDEGINRIDYGSEHGKKGSHVSKVHAVPNDNYCAFENWLMPILDTMLREQK 140
+D + L EGI+RI Y V A + + +N + +T+
Sbjct: 101 SHHVDDEELFKEGIDRI-Y------------DVFAY-EEEFRKADNLIAEFAETL----- 141
Query: 141 ETGTVWTPSRIISRLGMEINH--EDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNP 198
++ + LG +N DSI A ++PIF PAL D S+G + R
Sbjct: 142 PGFKSYSSREFLYLLGKWLNEKDIDSIVAAAYRANVPIFVPALCDSSIGIGLVIARRRGH 201
Query: 199 GLICDILQDLRRLNTMAVKAVNTGMIILGG 228
++ D ++D+ + + K+ TG+I +GG
Sbjct: 202 RVVIDQIKDVDEITEIVEKSKKTGVIYIGG 231
Score = 75.5 bits (186), Expect = 4e-15
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 13/164 (7%)
Query: 200 LICDILQDLRRLNTMAVKAVNTGMIILGGAEINH--EDSICYWAAHNHIPIFSPALTDGS 257
LI + + L + + + + L G +N DSI A ++PIF PAL D S
Sbjct: 133 LIAEFAETLPGFKSYSSRE----FLYLLGKWLNEKDIDSIVAAAYRANVPIFVPALCDSS 188
Query: 258 LGDMMYFHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGGGVIKHHICNANLM---- 313
+G + R ++ D ++D+ + + K+ TG+I +GGGV K+ I ++
Sbjct: 189 IGIGLVIARRRGHRVVIDQIKDVDEITEIVEKSKKTGVIYIGGGVPKNFIQQTEVIASIL 248
Query: 314 ---RNGADYAVFINTGVEYDGSDSGARPDEAKSWGKIKREARPV 354
G +YA+ T + G SG +EA SWGK+ +A+ V
Sbjct: 249 GEDVEGHEYAIQYTTDAPHWGGLSGCTFEEAVSWGKVAPKAKKV 292
>gnl|CDD|235027 PRK02301, PRK02301, putative deoxyhypusine synthase; Provisional.
Length = 316
Score = 77.8 bits (192), Expect = 5e-16
Identities = 52/217 (23%), Positives = 99/217 (45%), Gaps = 24/217 (11%)
Query: 13 IDTYEEDLFIVRKHNCTIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGGVEEDLIK 72
+D YEE ++ + T F G MV +G+R + L++ +D +VTT + D+I+
Sbjct: 46 VDIYEE---MLADDDVTKFFGLAGAMVPAGMRGIVSDLIRDGHIDVLVTTGANLTHDVIE 102
Query: 73 CLAPS-YVGDFQLDGKTLRDEGINRIDYGSEHGKKGSHVSKVHAVPNDNYCAFENWLMPI 131
+ + G + LRDEGI+RI Y V+ +P +++ FE +L +
Sbjct: 103 AIGGHHHHGTAHAHDEELRDEGIDRI-Y------------DVY-LPQEHFADFEEFLQDV 148
Query: 132 LDTMLREQKETGTVWTPSRIISRLGMEINHEDSICYWAAHNHIPIFSPALTDGSLGDMMY 191
+ E + +++ +G +++ + I A +P++ PA+ D LG +
Sbjct: 149 FPGL-----EEEGTVSIRDLLTEIGRDLDDDSGILAAAYECDVPVYCPAIQDSVLGLQAW 203
Query: 192 FHSFRNPGLICDILQDLRRLNTMAVKAVNTGMIILGG 228
+S N D D+ L + +A G +++GG
Sbjct: 204 LYSQTNK-FTVDAFADMTELMDICYEAERAGALLVGG 239
Score = 77.0 bits (190), Expect = 9e-16
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 228 GAEINHEDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMA 287
G +++ + I A +P++ PA+ D LG + +S N D D+ L +
Sbjct: 168 GRDLDDDSGILAAAYECDVPVYCPAIQDSVLGLQAWLYSQTNK-FTVDAFADMTELMDIC 226
Query: 288 VKAVNTGMIILGGGVIKHHICNANLMR-NGADYAVFINTGVEYDGSDSGARPDEAKSWGK 346
+A G +++GGGV K++I + L+ DYAV + G SGA DEA+SWGK
Sbjct: 227 YEAERAGALLVGGGVPKNYILQSMLVTPKAFDYAVQLTMDRPETGGLSGATLDEARSWGK 286
Query: 347 IKREARPV 354
+ +A+ V
Sbjct: 287 LGEDAKNV 294
>gnl|CDD|235043 PRK02492, PRK02492, deoxyhypusine synthase-like protein;
Provisional.
Length = 347
Score = 66.2 bits (162), Expect = 4e-12
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 234 EDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNPG--LICDILQDLRRLNTMAVKAV 291
E+S+ A +PIF PA +D S G + H +NP + D ++D R L + + A
Sbjct: 179 ENSLVQKAYEKGVPIFCPAFSDSSAGFGLVHHQVKNPDPHVTIDSVKDFRELTDIKIAAG 238
Query: 292 NTGMIILGGGVIKHH-----ICNANLMRNGAD---YAVFINTGVEYDGSDSGARPDEAKS 343
TG+ ++GGGV K+ + A ++ YAV I DG+ S + EA S
Sbjct: 239 TTGLFMIGGGVPKNFAQDTVVA-AEVLGYEVSMHKYAVQITVADVRDGALSSSTLKEASS 297
Query: 344 WGKI 347
WGK+
Sbjct: 298 WGKV 301
Score = 65.1 bits (159), Expect = 1e-11
Identities = 54/218 (24%), Positives = 93/218 (42%), Gaps = 36/218 (16%)
Query: 23 VRKHNCTIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTT-AGGVEEDLIKCLA-PSYVG 80
++ C + L ++ S+G + LV++ +VDAIV T A V++D + L Y G
Sbjct: 54 LQDKECAVILTLAGSLSSAGCMQVYIDLVRNNMVDAIVATGANIVDQDFFEALGFKHYQG 113
Query: 81 DFQLDGKTLRDEGINRI--DYGSEHGKKGSHVSKVHAVPNDNYCAFENWLMPILDTM--- 135
+D LRD I+RI Y E + ++ + I +++
Sbjct: 114 SPFVDDAVLRDLYIDRIYDTYIDE----------------EELQVCDHTIAEIANSLEPR 157
Query: 136 ---LREQKETGTVWTPSRIISRLGMEINHEDSICYWAAHNHIPIFSPALTDGSLGDMMYF 192
RE +W + + E+S+ A +PIF PA +D S G +
Sbjct: 158 PYSSRE-----FIWEMGKYLEENA---KKENSLVQKAYEKGVPIFCPAFSDSSAGFGLVH 209
Query: 193 HSFRNPG--LICDILQDLRRLNTMAVKAVNTGMIILGG 228
H +NP + D ++D R L + + A TG+ ++GG
Sbjct: 210 HQVKNPDPHVTIDSVKDFRELTDIKIAAGTTGLFMIGG 247
Score = 30.8 bits (70), Expect = 1.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 361 YAVFINTGVEYDGSDSGARPDEAKSWGKI 389
YAV I DG+ S + EA SWGK+
Sbjct: 273 YAVQITVADVRDGALSSSTLKEASSWGKV 301
>gnl|CDD|179117 PRK00770, PRK00770, deoxyhypusine synthase-like protein;
Provisional.
Length = 384
Score = 50.5 bits (121), Expect = 7e-07
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 16/122 (13%)
Query: 246 IPIFSPALTDGSLGDMMYFHSFRNPGLICDILQDLRRLNTMAVKA----VNTGMIILGGG 301
+PI++ + D S+G + + L+ D D+ +A A +G +ILGGG
Sbjct: 189 VPIYTSSPGDSSIGMNVAALALEGSELVLDPAIDVNETAAIAYNAKESEGKSGAVILGGG 248
Query: 302 VIK----------HHICNANLMRNGADYAVFINTGVEYDGSDSGARPDEAKSWGKIKREA 351
K H + L G DY + I G SGA P EA SWGK+ +
Sbjct: 249 SPKNFLLQTQPQIHEVLG--LEERGHDYFIQITDARPDTGGLSGATPSEAVSWGKVDPDE 306
Query: 352 RP 353
P
Sbjct: 307 LP 308
Score = 34.8 bits (80), Expect = 0.063
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 29 TIFLGYTSNMVSSGV-RETIKFLVQHKLVDAIVTTAGGVEEDLIKCLA-PSYVGDFQLDG 86
T+ L + M +G + L++ +D I++T + DL L P + G +D
Sbjct: 53 TVGLTLSGAMTPAGFGVSALAPLIEAGFIDWIISTGANLYHDLHYALGLPLFAGHPFVDD 112
Query: 87 KTLRDEGINRI 97
LR+EGI RI
Sbjct: 113 VKLREEGIIRI 123
>gnl|CDD|193498 cd03876, M28_SGAP_like, M28 Zn-peptidase Streptomyces griseus
Aminopeptidase and similar proteins. Peptidase family
M28; Streptomyces griseus Aminopeptidase (SGAP, Leucine
aminopeptidase (LAP), aminopeptidase S, Mername-AA022
peptidase) subfamily. SGAP is a di-zinc exopeptidase
with high preference towards large hydrophobic
amino-terminal residues, with Leu being the most
efficiently cleaved. It can accommodate all except Pro
and Glu residues in the P1' position. It is a monomeric
(30 kDa), calcium-activated and calcium-stabilized
enzyme; its activation by calcium correlates with
substrate specificity and it has thermal stability only
in the presence of calcium. Although SGAP contains a
calcium binding site, it is not conserved in many
members of this subfamily. SGAP is present in the
extracellular fluid of S. griseus cultures.
Length = 288
Score = 30.3 bits (69), Expect = 1.7
Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 17/83 (20%)
Query: 319 YAVFINTGVEYDGSDSGARPDE---------AKSWGKIKREARPVKRNG-ADYAVFINTG 368
Y FI G DGS + + P + +G +DY FI G
Sbjct: 163 YGYFIYDG---DGSAFNGPGPPGSAEIERLFEDYFTAQGLPSEPTEFDGRSDYGPFIEAG 219
Query: 369 VEYDGSDSGAR----PDEAKSWG 387
+ G +GA ++A WG
Sbjct: 220 IPAGGLFTGAEGIKTAEQAALWG 242
>gnl|CDD|237754 PRK14554, PRK14554, putative pseudouridylate synthase; Provisional.
Length = 422
Score = 30.3 bits (69), Expect = 2.1
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 20/97 (20%)
Query: 4 RRLDLPEDKIDTYEEDLFIVRKHNCTIFLGYTS-NMVSSGVRETIKFLVQHKLVDAIVTT 62
R++DL + + + V L + + V E IK K A+V +
Sbjct: 270 RKVDLEALEEEINADGKVEVEN------LRFATRKEV-----ERIKEEKASKTYRALVES 318
Query: 63 AGGV-EEDLIKCLAPSYVGDFQLDGKTLRDEGINRID 98
V EE+L K L +L G T+ R+
Sbjct: 319 DEPVSEEELEKLLD-------ELSGATIEQRTPRRVK 348
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase
[Posttranslational modification, protein turnover,
chaperones].
Length = 1089
Score = 28.3 bits (63), Expect = 8.4
Identities = 35/169 (20%), Positives = 58/169 (34%), Gaps = 23/169 (13%)
Query: 22 IVRKHNCTIFLGYTSNMVSSGVRETIKFLVQHKLVDAIVTTAGGVEEDLIKCLAPSYVGD 81
++++HN T+ + N V+ RE + + T G E +
Sbjct: 620 MIKRHNKTVRVDRPCNRVNITTRELVG-----------MNTRTGEELRSYLERIIEHN-- 666
Query: 82 FQLD---GKTLRDEGINRI--DYGSEHGKKGSHVSKVHAVPND---NYCAF-ENWLMPIL 132
QLD L +G+ I Y + S +H + + E+ + L
Sbjct: 667 -QLDSQRKVALTKDGVINIFVKYFDYTTQPISGFGGLHVNKFLKISSISPWIEDSISSNL 725
Query: 133 DTMLREQKETGTVWTPSRIISRLGMEINHEDSICYWAAHNHIPIFSPAL 181
L E+ + G V T I+ +G EI D IC+ S A
Sbjct: 726 PLTLYEEIKPGMVDTIGDNITFIGSEIGTGDIICFEVPGAVEFDTSSAY 774
>gnl|CDD|220790 pfam10510, PIG-S, Phosphatidylinositol-glycan biosynthesis class
S protein. PIG-S is one of several key, core,
components of the glycosylphosphatidylinositol (GPI)
trans-amidase complex that mediates GPI anchoring in
the endoplasmic reticulum. Anchoring occurs when a
protein's C-terminal GPI attachment signal peptide is
replaced with a pre-assembled GPI. Mammalian
GPITransamidase consists of at least five components:
Gaa1, Gpi8, PIG-S, PIG-T, and PIG-U, all five of which
are required for function. It is possible that Gaa1,
Gpi8, PIG-S, and PIG-T form a tightly associated core
that is only weakly associated with PIG-U. The exact
function of PIG-S is unclear.
Length = 502
Score = 28.4 bits (64), Expect = 8.6
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 5 RLDLPEDKIDTYEEDLFIVRKHNCTIFLGYTSNMVSSGVRETIKFLVQHKLVD 57
R LP D+I++ ++ +++ + ++ E ++ VQH L D
Sbjct: 23 RAPLPADEIESLSDNKSCPIHFPVPVYI-VSDSLFPD-DAEALQREVQHLLDD 73
>gnl|CDD|184549 PRK14167, PRK14167, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 27.8 bits (62), Expect = 9.1
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Query: 59 IVTTAGGVEEDLIKCLAPSYVGDFQLDGKTLRDEGINRIDYGSEHG 104
IV A GV E LI G +G T+ D GINR+D +E G
Sbjct: 207 IVVAAAGVPE-LID-------GSMLSEGATVIDVGINRVDADTEKG 244
>gnl|CDD|153137 cd06269, PBP1_glutamate_receptors_like, Family C G-protein couples
receptors (GPCRs), membrane bound guanylyl cyclases such
as the family of natriuretic peptide receptors (NPRs),
and the N-terminal leucine/isoleucine/valine- binding
protein (LIVBP)-like domain of the ionotropic glutamate
receptors. This CD represents the ligand-binding domain
of the family C G-protein couples receptors (GPCRs),
membrane bound guanylyl cyclases such as the family of
natriuretic peptide receptors (NPRs), and the N-terminal
leucine/isoleucine/valine- binding protein (LIVBP)-like
domain of the ionotropic glutamate receptors, all of
which are structurally similar and related to the
periplasmic-binding fold type I family. The family C
GPCRs consist of metabotropic glutamate receptor (mGluR)
receptors, a calcium-sensing receptor (CaSR),
gamma-aminobutyric receptors (GABAb), the promiscuous
L-alpha-amino acid receptor GPR6A, families of taste and
pheromone receptors, and orphan receptors. Truncated
splicing variants of the orphan receptors are not
included in this CD. The family C GPCRs are activated by
endogenous agonists such as amino acids, ions, and sugar
based molecules. Their amino terminal ligand-binding
region is homologous to the bacterial
leucine-isoleucine-valine binding protein (LIVBP) and a
leucine binding protein (LBP). The ionotropic glutamate
receptors (iGluRs) have an integral ion channel and are
subdivided into three major groups based on their
pharmacology and structural similarities: NMDA
receptors, AMPA receptors, and kainate receptors. The
family of membrane bound guanylyl cyclases is further
divided into three subfamilies: the ANP receptor
(GC-A)/C-type natriuretic peptide receptor (GC-B), the
heat-stable enterotoxin receptor (GC-C)/sensory organ
specific membrane GCs such as retinal receptors (GC-E,
GC-F), and olfactory receptors (GC-D and GC-G).
Length = 298
Score = 27.9 bits (62), Expect = 9.4
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 223 MIILGGAEINHEDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSF 267
+ ++G + + +++ HIP S + T L D F SF
Sbjct: 73 VAVIGPSSSSSAEAVASLLGALHIPQISYSATSPLLSDKEQFPSF 117
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.426
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,076,703
Number of extensions: 2073246
Number of successful extensions: 1549
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1519
Number of HSP's successfully gapped: 40
Length of query: 400
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 301
Effective length of database: 6,546,556
Effective search space: 1970513356
Effective search space used: 1970513356
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)