BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4461
(95 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42678|SUI1_ANOGA Protein translation factor SUI1 homolog OS=Anopheles gambiae
GN=AGAP006459 PE=3 SV=1
Length = 110
Score = 159 bits (401), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRKTLTTVQGLS+EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL
Sbjct: 35 RNGRKTLTTVQGLSAEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 94
Query: 80 TKTGLAKPEQLKVHGF 95
TK+GLAKPEQLKVHGF
Sbjct: 95 TKSGLAKPEQLKVHGF 110
>sp|Q9VZS3|SUI1_DROME Protein translation factor SUI1 homolog OS=Drosophila melanogaster
GN=CG17737 PE=1 SV=1
Length = 110
Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRKTLTTVQGLS+EYDLKKIVR+CKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL
Sbjct: 35 RNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 94
Query: 80 TKTGLAKPEQLKVHGF 95
TK GLAKP+QLKVHGF
Sbjct: 95 TKVGLAKPDQLKVHGF 110
>sp|Q5RFF4|EIF1_PONAB Eukaryotic translation initiation factor 1 OS=Pongo abelii GN=EIF1
PE=3 SV=1
Length = 113
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/76 (77%), Positives = 70/76 (92%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRKTLTTVQG++ +YD KK+V+A KK+FACNGTVIEHPEYGEV+QLQGDQR+NICQ+L
Sbjct: 38 RNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFL 97
Query: 80 TKTGLAKPEQLKVHGF 95
+ GLAK +QLKVHGF
Sbjct: 98 VEIGLAKDDQLKVHGF 113
>sp|P41567|EIF1_HUMAN Eukaryotic translation initiation factor 1 OS=Homo sapiens GN=EIF1
PE=1 SV=1
Length = 113
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/76 (77%), Positives = 70/76 (92%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRKTLTTVQG++ +YD KK+V+A KK+FACNGTVIEHPEYGEV+QLQGDQR+NICQ+L
Sbjct: 38 RNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFL 97
Query: 80 TKTGLAKPEQLKVHGF 95
+ GLAK +QLKVHGF
Sbjct: 98 VEIGLAKDDQLKVHGF 113
>sp|Q5E938|EIF1_BOVIN Eukaryotic translation initiation factor 1 OS=Bos taurus GN=EIF1
PE=3 SV=1
Length = 113
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/76 (77%), Positives = 70/76 (92%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRKTLTTVQG++ +YD KK+V+A KK+FACNGTVIEHPEYGEV+QLQGDQR+NICQ+L
Sbjct: 38 RNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFL 97
Query: 80 TKTGLAKPEQLKVHGF 95
+ GLAK +QLKVHGF
Sbjct: 98 VEIGLAKDDQLKVHGF 113
>sp|P48024|EIF1_MOUSE Eukaryotic translation initiation factor 1 OS=Mus musculus GN=Eif1
PE=2 SV=2
Length = 113
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/76 (77%), Positives = 70/76 (92%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRKTLTTVQG++ +YD KK+V+A KK+FACNGTVIEHPEYGEV+QLQGDQR+NICQ+L
Sbjct: 38 RNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFL 97
Query: 80 TKTGLAKPEQLKVHGF 95
+ GLAK +QLKVHGF
Sbjct: 98 IEIGLAKDDQLKVHGF 113
>sp|P51971|EIF1_CHICK Eukaryotic translation initiation factor 1 (Fragment) OS=Gallus
gallus GN=EIF1 PE=3 SV=1
Length = 79
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/76 (77%), Positives = 70/76 (92%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRKTLTTVQG++ +YD KK+V+A KK+FACNGTVIEHPEYGEV+QLQGDQR+NICQ+L
Sbjct: 4 RNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFL 63
Query: 80 TKTGLAKPEQLKVHGF 95
+ GLAK +QLKVHGF
Sbjct: 64 VEIGLAKDDQLKVHGF 79
>sp|P61220|EIF1B_PIG Eukaryotic translation initiation factor 1b OS=Sus scrofa GN=EIF1B
PE=3 SV=1
Length = 113
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 69/76 (90%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRKTLTTVQG++ +YD KK+V+A KK+FACNGTVIEHPEYGEV+QLQGDQR+NICQ+L
Sbjct: 38 RNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFL 97
Query: 80 TKTGLAKPEQLKVHGF 95
+ G+ K EQLKVHGF
Sbjct: 98 LEVGIVKEEQLKVHGF 113
>sp|Q9CXU9|EIF1B_MOUSE Eukaryotic translation initiation factor 1b OS=Mus musculus
GN=Eif1b PE=2 SV=2
Length = 113
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 69/76 (90%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRKTLTTVQG++ +YD KK+V+A KK+FACNGTVIEHPEYGEV+QLQGDQR+NICQ+L
Sbjct: 38 RNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFL 97
Query: 80 TKTGLAKPEQLKVHGF 95
+ G+ K EQLKVHGF
Sbjct: 98 LEVGIVKEEQLKVHGF 113
>sp|Q4R4X9|EIF1B_MACFA Eukaryotic translation initiation factor 1b OS=Macaca fascicularis
GN=EIF1B PE=3 SV=1
Length = 113
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 69/76 (90%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRKTLTTVQG++ +YD KK+V+A KK+FACNGTVIEHPEYGEV+QLQGDQR+NICQ+L
Sbjct: 38 RNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFL 97
Query: 80 TKTGLAKPEQLKVHGF 95
+ G+ K EQLKVHGF
Sbjct: 98 LEVGIVKEEQLKVHGF 113
>sp|O60739|EIF1B_HUMAN Eukaryotic translation initiation factor 1b OS=Homo sapiens
GN=EIF1B PE=1 SV=2
Length = 113
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 69/76 (90%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRKTLTTVQG++ +YD KK+V+A KK+FACNGTVIEHPEYGEV+QLQGDQR+NICQ+L
Sbjct: 38 RNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFL 97
Query: 80 TKTGLAKPEQLKVHGF 95
+ G+ K EQLKVHGF
Sbjct: 98 LEVGIVKEEQLKVHGF 113
>sp|P56330|SUI1_MAIZE Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3
SV=1
Length = 115
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 59/76 (77%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRK+LTTVQGL E+ KI++ KKEF CNGTV++ PE G+V+QLQGDQR+N+ +L
Sbjct: 40 RNGRKSLTTVQGLKKEFSYSKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFL 99
Query: 80 TKTGLAKPEQLKVHGF 95
+ G+ K E +K+HGF
Sbjct: 100 VQAGIVKKEHIKIHGF 115
>sp|Q9SM41|SUI1_SPOST Protein translation factor SUI1 homolog OS=Sporobolus stapfianus
PE=3 SV=1
Length = 115
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 59/76 (77%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRK+LTTVQGL E+ KI++ KKEF CNGTV++ PE G+V+QLQGDQR+N+ +L
Sbjct: 40 RNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFL 99
Query: 80 TKTGLAKPEQLKVHGF 95
+ G+ K E +K+HGF
Sbjct: 100 VQAGIVKKEHIKIHGF 115
>sp|Q0D5W6|SUI1_ORYSJ Protein translation factor SUI1 homolog OS=Oryza sativa subsp.
japonica GN=GOS2 PE=3 SV=1
Length = 115
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 59/76 (77%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRK+LTTVQGL E+ KI++ KKEF CNGTV++ PE G+V+QLQGDQR+N+ +L
Sbjct: 40 RNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFL 99
Query: 80 TKTGLAKPEQLKVHGF 95
+ G+ K E +K+HGF
Sbjct: 100 VQAGIVKKEHIKIHGF 115
>sp|A6MZM2|SUI1_ORYSI Protein translation factor SUI1 homolog OS=Oryza sativa subsp.
indica GN=GOS2 PE=2 SV=1
Length = 115
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 59/76 (77%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRK+LTTVQGL E+ KI++ KKEF CNGTV++ PE G+V+QLQGDQR+N+ +L
Sbjct: 40 RNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFL 99
Query: 80 TKTGLAKPEQLKVHGF 95
+ G+ K E +K+HGF
Sbjct: 100 VQAGIVKKEHIKIHGF 115
>sp|O48650|SUI1_SALBA Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1
Length = 113
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 59/76 (77%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRK+LTTVQGL +Y KI++ KKEF CNGTV++ PE G+V+QLQGDQR+N+ +L
Sbjct: 38 RNGRKSLTTVQGLKKDYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSSFL 97
Query: 80 TKTGLAKPEQLKVHGF 95
+ G+ K E +K+HGF
Sbjct: 98 VQAGIVKKENIKIHGF 113
>sp|Q94JV4|SUI12_ARATH Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana
GN=At1g54290 PE=3 SV=1
Length = 113
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 58/76 (76%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRK+LTTVQGL EY KI++ KKEF CNGTV++ E G+V+QLQGDQR+N+ +L
Sbjct: 38 RNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFL 97
Query: 80 TKTGLAKPEQLKVHGF 95
+ GL K + +K+HGF
Sbjct: 98 VQAGLVKKDNIKIHGF 113
>sp|P41568|SUI11_ARATH Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana
GN=At4g27130 PE=3 SV=2
Length = 113
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 58/76 (76%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRK+LTTVQGL EY KI++ KKEF CNGTV++ E G+V+QLQGDQR+N+ +L
Sbjct: 38 RNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFL 97
Query: 80 TKTGLAKPEQLKVHGF 95
+ GL K + +K+HGF
Sbjct: 98 VQAGLVKKDNIKIHGF 113
>sp|P32911|SUI1_YEAST Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SUI1 PE=1
SV=1
Length = 108
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 63/77 (81%), Gaps = 2/77 (2%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRKTLTTVQG+ EYDLK+I++ KK+FACNG +++ PE GE++QLQGDQR +C+++
Sbjct: 33 RNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFM 92
Query: 80 -TKTGLAKPEQLKVHGF 95
++ GL K + +K+HGF
Sbjct: 93 ISQLGLQK-KNIKIHGF 108
>sp|Q9SQF4|SUI1_BRAOL Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3
SV=1
Length = 113
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRK+LTTVQGL EY KI++ KKEF CNGTV++ E G+V+QLQGDQR+N+ +L
Sbjct: 38 RNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFL 97
Query: 80 TKTGLAKPEQLKVHGF 95
+ GL K + +++HGF
Sbjct: 98 VQAGLVKKDDIQIHGF 113
>sp|P79060|SUI1_SCHPO Protein translation factor sui1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sui1 PE=3 SV=3
Length = 109
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRKTLTTVQGL E+D K+I+RA KK+FACNGT+++ + GEV+QLQGDQR + ++L
Sbjct: 34 RNGRKTLTTVQGLPREFDQKRILRALKKDFACNGTIVKDDDLGEVIQLQGDQRIKVMEFL 93
Query: 80 TKT-GLAKPEQLKVHGF 95
T+ GL K + +K+HGF
Sbjct: 94 TQQLGLQK-KNIKIHGF 109
>sp|Q755R1|SUI1_ASHGO Protein translation factor SUI1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SUI1A
PE=3 SV=1
Length = 108
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 61/77 (79%), Gaps = 2/77 (2%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRKTLTTVQG+ EYDLK+I++ +K+F CNG +++ E GE++QLQGDQR +C++L
Sbjct: 33 RNGRKTLTTVQGIPEEYDLKRILKVLRKDFGCNGNMVKDDEMGEIIQLQGDQRAKVCEFL 92
Query: 80 TKTGLAKPEQ-LKVHGF 95
T LA P++ +K+HGF
Sbjct: 93 I-TQLAIPKKNIKIHGF 108
>sp|O82569|SUI1_PIMBR Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa
PE=3 SV=1
Length = 113
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 54/76 (71%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRK+LTTVQGL E KI++ KK CNGTV+ E G+V+QLQGDQR+N+ ++
Sbjct: 38 RNGRKSLTTVQGLKKELSYDKILKDLKKALCCNGTVVNDKELGKVIQLQGDQRKNVSTFI 97
Query: 80 TKTGLAKPEQLKVHGF 95
+ G+ K +Q+KVH F
Sbjct: 98 VQAGIVKKDQIKVHNF 113
>sp|Q1E556|DENR_COCIM Translation machinery-associated protein 22 OS=Coccidioides immitis
(strain RS) GN=TMA22 PE=3 SV=1
Length = 200
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 20 RNGRKTLTTVQGLSSE-YDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQW 78
RN RK +T + GL + D KK+ + K+FA +V ++P GE + +QGD E++ +W
Sbjct: 113 RNKRKHVTVIAGLEAHGLDNKKVAKELGKKFATGSSVTKNPAGGEEITVQGDVCEDVLEW 172
Query: 79 LTKT-GLAKPE 88
L + G PE
Sbjct: 173 LVEVHGKEVPE 183
>sp|B8GDE2|SUI1_METPE Protein translation factor SUI1 homolog OS=Methanosphaerula
palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)
GN=Mpal_1990 PE=3 SV=1
Length = 101
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 24 KTLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKT 82
K +T + GL S+ DL+++ + K + AC GTV G ++LQGD R+ + + LTK
Sbjct: 39 KEVTVIDGLDPSDIDLQELTKFLKGKLACGGTV-----KGSSIELQGDHRDRVKELLTKK 93
Query: 83 GLA 85
G +
Sbjct: 94 GYS 96
>sp|Q97BW9|SUI1_THEVO Protein translation factor SUI1 homolog OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=TV0336 PE=3 SV=1
Length = 100
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 24 KTLTTVQGLSSEY-DLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKT 82
K +T ++G+ + D++KI + KK+ A GTV E G +++LQGD R+ + ++L
Sbjct: 37 KFVTIIEGIDPKIEDIEKIAKELKKKVASGGTVKE----GRIIELQGDHRQEVKKFLEDM 92
Query: 83 GL 84
G
Sbjct: 93 GF 94
>sp|A4YIU6|SUI1_METS5 Protein translation factor SUI1 homolog OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=Msed_2210 PE=3 SV=1
Length = 99
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 24 KTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTG 83
K +T ++GL + DLKKI K + A GTV + G + ++QGD RE L K G
Sbjct: 35 KEVTVIEGLGDDADLKKIASELKSKLAAGGTV----KNGRI-EIQGDHRERARDLLVKLG 89
Query: 84 L 84
Sbjct: 90 F 90
>sp|Q4WBL6|DENR_ASPFU Translation machinery-associated protein 22 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=tma22 PE=3 SV=2
Length = 194
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 20 RNGRKTLTTVQGLSSE-YDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQW 78
RN RK +T + GL + KK+ + K+FA +V + P E + +QGD E++ +W
Sbjct: 109 RNKRKHVTVITGLEVHGLENKKVAKELGKKFATGSSVTKSPAGVEEITVQGDVSEDVKEW 168
Query: 79 L 79
L
Sbjct: 169 L 169
>sp|A1DAY1|DENR_NEOFI Translation machinery-associated protein 22 OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=tma22 PE=3 SV=1
Length = 194
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 20 RNGRKTLTTVQGLSSE-YDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQW 78
RN RK +T + GL + KK+ + K+FA +V + P E + +QGD E++ +W
Sbjct: 109 RNKRKHVTVITGLEVHGLENKKVAKELGKKFATGSSVTKSPAGVEEITVQGDVSEDVQEW 168
Query: 79 L 79
L
Sbjct: 169 L 169
>sp|A1C8E3|DENR_ASPCL Translation machinery-associated protein 22 OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=tma22 PE=3 SV=1
Length = 194
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 20 RNGRKTLTTVQGLSSE-YDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQW 78
RN RK +T + GL + KK+ + K+FA +V + P E + +QGD E++ +W
Sbjct: 109 RNKRKHVTVITGLEVHGLENKKVAKELGKKFATGSSVTKSPAGVEEITVQGDVSEDVQEW 168
Query: 79 L 79
L
Sbjct: 169 L 169
>sp|Q975S0|SUI1_SULTO Protein translation factor SUI1 homolog OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_03500 PE=3 SV=1
Length = 100
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 6/61 (9%)
Query: 24 KTLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKT 82
K +T ++GLS S+ +LKKI K + A GTV + G++ +LQGD RE + + L K
Sbjct: 35 KEVTIIEGLSGSDVELKKIASELKSKLAAGGTV----KNGKI-ELQGDHRERVKELLMKM 89
Query: 83 G 83
G
Sbjct: 90 G 90
>sp|Q2H5Z7|DENR_CHAGB Translation machinery-associated protein 22 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=TMA22 PE=3 SV=1
Length = 188
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 13 LLLLSLLRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ 71
+ + + RN RK +T+V GL + +LKK+ + K+FA +V + P GE + +QGD
Sbjct: 96 VTIKRIERNKRKFVTSVTGLEAFGLELKKVAKDFGKKFATGASVTKVPSGGEEIVVQGDV 155
Query: 72 RENICQWL 79
I ++L
Sbjct: 156 SGEIEEFL 163
>sp|Q9P3T4|DENR_NEUCR Translation machinery-associated protein 22 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=tma-22 PE=3 SV=1
Length = 187
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 20 RNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQW 78
RN RK +T+V GL + +LKK+ + K+FA +V + P GE + +QGD I ++
Sbjct: 101 RNKRKYVTSVSGLEAFGLELKKVAKDFGKKFATGSSVTKVPSGGEEIVVQGDVSGEIEEF 160
Query: 79 L 79
+
Sbjct: 161 I 161
>sp|Q5UQD7|SUI1_MIMIV Protein translation factor SUI1 homolog OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R464 PE=3 SV=1
Length = 106
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIE-HPEYGEVLQLQGDQRENICQW 78
R K++T ++ + + DLK ++ K F C+G++ + + + + +QL GD RE + +
Sbjct: 30 RTKTKSITIIENIPEKIDLKLFLKKLKYTFHCSGSIQQNYDDDSKFIQLSGDHRELVKNF 89
Query: 79 LTKTGLAKPEQLKVHGF 95
L K + K + +HG+
Sbjct: 90 LIKNSIVKESNIVMHGY 106
>sp|A4QVI3|DENR_MAGO7 Translation machinery-associated protein 22 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=TMA22 PE=3
SV=2
Length = 201
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 18 LLRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENIC 76
+ RN RK +T+V GL S +LKK+ + K+FA +V + GE + +QGD + I
Sbjct: 109 IERNKRKYVTSVSGLESFGLELKKVAKDFGKKFATGSSVTKVASGGEEIVVQGDVSDEIK 168
Query: 77 QWLTKTGLAKPE 88
+++ + PE
Sbjct: 169 EFIVEKYKDVPE 180
>sp|B6YSM1|SUI1_THEON Protein translation factor SUI1 homolog OS=Thermococcus
onnurineus (strain NA1) GN=TON_0074 PE=3 SV=1
Length = 98
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 27 TTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLA 85
T ++G+ E+DL+ I + K + AC GTV + G + +LQGD RE + + L G +
Sbjct: 37 TIIEGIDEKEFDLEDIAKKLKAKLACGGTV----KKGRI-ELQGDHREKVKKLLADLGFS 91
>sp|Q12UF1|SUI1_METBU Protein translation factor SUI1 homolog OS=Methanococcoides
burtonii (strain DSM 6242) GN=Mbur_2049 PE=3 SV=1
Length = 102
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 24 KTLTTVQGL-SSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKT 82
K +T V+G ++E DL ++ K +FAC GTV G ++LQG+ + L K
Sbjct: 39 KEVTVVEGFDANEIDLHELSTYLKSKFACGGTV-----KGSAVELQGNHLSRMKAVLVKK 93
Query: 83 GLAKPEQLK 91
G + PEQ+K
Sbjct: 94 GFS-PEQIK 101
>sp|Q4JAE7|SUI1_SULAC Protein translation factor SUI1 homolog OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929
/ NBRC 15157 / NCIMB 11770) GN=Saci_0865 PE=3 SV=1
Length = 99
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 24 KTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKT 82
K +T V+G+S+ E +LKKI K + A GTV + G++ +LQGD R+ + + L K
Sbjct: 34 KEVTIVEGISNDETELKKIASELKSKLAAGGTV----KNGKI-ELQGDHRDRVKELLIKM 88
Query: 83 GL 84
G
Sbjct: 89 GF 90
>sp|Q57902|SUI1_METJA Protein translation factor SUI1 homolog OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0463 PE=3 SV=1
Length = 103
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 20 RNGRKTLTTVQGL-SSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQW 78
R K +T ++G +S DLK++ + K AC GTV ++ ++LQGD R+ + +
Sbjct: 35 RRFGKLMTIIEGFDTSVIDLKELAKKLKDICACGGTVKDN-----TIELQGDHRKKVAEE 89
Query: 79 LTKTGLAK 86
L K G ++
Sbjct: 90 LVKMGFSR 97
>sp|C5A278|SUI1_THEGJ Protein translation factor SUI1 homolog OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_1995 PE=3 SV=1
Length = 98
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 27 TTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLA 85
T ++G+ E+DL+ I + K + AC GTV + G + +LQGD R+ I + L G +
Sbjct: 37 TIIEGIDEKEFDLEDIAKKLKAKLACGGTV----KKGRI-ELQGDHRDRIKKLLADLGFS 91
Query: 86 K 86
+
Sbjct: 92 E 92
>sp|A6SIZ0|DENR_BOTFB Translation machinery-associated protein 22 OS=Botryotinia
fuckeliana (strain B05.10) GN=tma22 PE=3 SV=1
Length = 197
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 20 RNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQW 78
RN RK +T VQGL + +LKK+ + FA +V + G+ + +QGD +++ ++
Sbjct: 110 RNKRKYVTEVQGLEAFGLELKKVAKEFGSRFATGSSVTKVASGGQEITVQGDVSDDVREF 169
Query: 79 LTKT 82
L K
Sbjct: 170 LIKN 173
>sp|P58193|SUI1_PYRHO Protein translation factor SUI1 homolog OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC
100139 / OT-3) GN=PH1771.1 PE=3 SV=1
Length = 99
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 24 KTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKT 82
K T ++G+ E+DL++I + K + AC GT + G + +LQGD R+ I + L +
Sbjct: 35 KVKTIIEGIDEKEFDLEEIAKKLKAKLACGGTA----KNGRI-ELQGDHRDRIKKLLAEL 89
Query: 83 GLAK 86
G ++
Sbjct: 90 GFSE 93
>sp|Q9V1U3|SUI1_PYRAB Protein translation factor SUI1 homolog OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB03340 PE=3 SV=2
Length = 98
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 24 KTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKT 82
K T ++G+ E+DL++I + K + AC GT + G + +LQGD R+ I + L +
Sbjct: 34 KIKTIIEGIDEKEFDLEEIAKKLKAKLACGGTA----KNGRI-ELQGDHRDRIKKLLAEL 88
Query: 83 GLAK 86
G ++
Sbjct: 89 GFSE 92
>sp|Q8U006|SUI1_PYRFU Protein translation factor SUI1 homolog OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1817 PE=3 SV=1
Length = 98
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 24 KTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKT 82
K T ++G+ E+DL++I + K + AC GT + G + +LQGD R+ I + L +
Sbjct: 34 KIKTIIEGIDEKEFDLEEIAKKLKAKLACGGTA----KNGRI-ELQGDHRDRIKKLLVEL 88
Query: 83 GLAK 86
G ++
Sbjct: 89 GFSE 92
>sp|Q6L1B9|SUI1_PICTO Protein translation factor SUI1 homolog OS=Picrophilus torridus
(strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC
100828) GN=PTO0648 PE=3 SV=1
Length = 99
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 24 KTLTTVQGLSSEY-DLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKT 82
K +T ++G+ + D+ +I ++ KK+ A GTV + G++++LQGD RE L
Sbjct: 37 KVVTLIEGIDPKVEDINEIAKSLKKKVASGGTVKD----GKIIELQGDHRETARAQLESM 92
Query: 83 GL 84
G
Sbjct: 93 GF 94
>sp|Q5JDH7|SUI1_PYRKO Protein translation factor SUI1 homolog OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=TK1534 PE=3 SV=1
Length = 98
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 24 KTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKT 82
K T ++G+ E+DL+ I + K + AC GT + G + +LQGD R+ + + L +
Sbjct: 34 KLKTIIEGIDEKEFDLEDIAKKLKAKLACGGTA----KNGRI-ELQGDHRDRVKKLLAEL 88
Query: 83 GLAK 86
G ++
Sbjct: 89 GFSE 92
>sp|Q2TVZ2|DENR_ASPOR Translation machinery-associated protein 22 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=tma22 PE=3 SV=1
Length = 194
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 20 RNGRKTLTTVQGLSSEYDL--KKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQ 77
RN RK +T + GL Y L KK+ + K+FA +V E + +QGD +++
Sbjct: 109 RNKRKHVTVIAGLEV-YGLENKKVAKELGKKFATGSSVTRSAAGNEEITVQGDVSDDVQD 167
Query: 78 WL 79
WL
Sbjct: 168 WL 169
>sp|A9A389|SUI1_NITMS Protein translation factor SUI1 homolog OS=Nitrosopumilus maritimus
(strain SCM1) GN=Nmar_0622 PE=3 SV=1
Length = 102
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 20 RNGRKTLTTVQGLSSEYD-LKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQW 78
R +K T ++GL + + L+ + + K ++AC GT E + LQGD R+ I
Sbjct: 34 RRFKKKGTMIEGLDPKLNNLETVAKELKSKYACGGTAKEG-----YIFLQGDHRDTIKDT 88
Query: 79 LTKTGLAKPEQLKVH 93
LT G A+ E +++H
Sbjct: 89 LTDLGFAE-ESIELH 102
>sp|Q46F27|SUI1_METBF Protein translation factor SUI1 homolog OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=Mbar_A0534 PE=3 SV=1
Length = 102
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 24 KTLTTVQGL-SSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKT 82
K +T V+G +SE DL ++ K +FAC GTV G ++LQG+ + + L +
Sbjct: 39 KEVTVVEGFDASEIDLHELSTYLKSKFACGGTV-----KGNTVELQGNHLARMKEVLMEK 93
Query: 83 GLAKPEQLK 91
G + EQ+K
Sbjct: 94 GFS-AEQIK 101
>sp|Q8TIT3|SUI1_METAC Protein translation factor SUI1 homolog OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=MA_4059 PE=3 SV=1
Length = 102
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 24 KTLTTVQGL-SSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKT 82
K +T V+G +SE DL ++ K +FAC GTV G ++LQG+ + + L +
Sbjct: 39 KEVTVVEGFDASEIDLHELSTYLKSKFACGGTV-----KGNTVELQGNHLARMKEVLMEK 93
Query: 83 GLAKPEQLK 91
G + EQ+K
Sbjct: 94 GFS-AEQIK 101
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,238,865
Number of Sequences: 539616
Number of extensions: 1171381
Number of successful extensions: 3050
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 3001
Number of HSP's gapped (non-prelim): 94
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)