Query psy4461
Match_columns 95
No_of_seqs 117 out of 809
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 17:40:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01160 SUI1_MOF2 translatio 100.0 3.5E-32 7.6E-37 184.3 9.1 84 12-95 27-110 (110)
2 KOG1770|consensus 100.0 2.2E-29 4.8E-34 169.1 8.5 84 12-95 29-112 (112)
3 COG0023 SUI1 Translation initi 100.0 5.6E-29 1.2E-33 167.2 8.2 77 11-93 27-104 (104)
4 cd00474 SUI1_eIF1 The SUI1/eIF 100.0 1E-28 2.3E-33 158.0 8.5 75 13-93 2-77 (77)
5 PRK00939 translation initiatio 99.9 4.9E-27 1.1E-31 156.5 8.0 81 5-91 10-99 (99)
6 PF01253 SUI1: Translation ini 99.9 5.5E-26 1.2E-30 146.0 8.9 77 11-87 5-82 (83)
7 TIGR01158 SUI1_rel translation 99.9 4.2E-24 9E-29 142.7 9.2 72 13-90 26-99 (101)
8 TIGR01159 DRP1 density-regulat 99.9 5.5E-24 1.2E-28 153.8 8.7 82 11-92 89-172 (173)
9 PRK06824 translation initiatio 99.9 7.7E-24 1.7E-28 145.1 8.8 75 5-84 25-111 (118)
10 PRK09019 translation initiatio 99.9 2.4E-23 5.2E-28 140.7 9.2 69 11-84 29-101 (108)
11 PRK07451 translation initiatio 99.9 3.7E-23 8.1E-28 141.1 9.1 71 9-84 34-108 (115)
12 KOG3239|consensus 99.7 3.2E-17 6.9E-22 118.9 7.5 80 13-92 103-184 (193)
13 KOG2522|consensus 99.6 2.3E-15 5E-20 121.9 6.0 81 10-91 466-549 (560)
14 PF05046 Img2: Mitochondrial l 98.5 4.8E-07 1E-11 58.8 7.2 61 19-84 21-87 (87)
15 KOG4034|consensus 96.8 0.0023 4.9E-08 46.3 4.2 61 20-84 104-169 (169)
16 PRK03988 translation initiatio 95.0 0.061 1.3E-06 37.7 4.9 52 19-77 36-92 (138)
17 TIGR00311 aIF-2beta translatio 94.9 0.063 1.4E-06 37.4 4.8 51 20-77 32-87 (133)
18 smart00653 eIF2B_5 domain pres 94.2 0.14 3.1E-06 34.6 5.1 58 19-81 12-75 (110)
19 PRK14434 acylphosphatase; Prov 93.8 0.49 1.1E-05 30.8 6.9 54 28-81 7-61 (92)
20 PRK14451 acylphosphatase; Prov 93.6 0.48 1.1E-05 30.5 6.6 52 29-81 9-60 (89)
21 PRK12336 translation initiatio 93.1 0.24 5.2E-06 36.4 5.0 55 20-81 33-93 (201)
22 PRK14443 acylphosphatase; Prov 92.4 0.86 1.9E-05 29.8 6.5 53 28-81 9-61 (93)
23 PRK14444 acylphosphatase; Prov 92.1 1.3 2.7E-05 28.7 7.0 54 27-81 8-61 (92)
24 PRK14439 acylphosphatase; Prov 91.6 1.2 2.5E-05 32.4 6.9 58 26-83 78-137 (163)
25 PRK14446 acylphosphatase; Prov 91.5 1 2.3E-05 29.1 6.0 53 28-81 7-59 (88)
26 PRK14420 acylphosphatase; Prov 91.4 1.5 3.2E-05 28.1 6.7 53 28-81 7-59 (91)
27 PRK14425 acylphosphatase; Prov 91.2 1.1 2.4E-05 29.1 6.0 54 27-80 10-65 (94)
28 PRK14450 acylphosphatase; Prov 91.1 1.7 3.6E-05 27.9 6.7 55 28-83 7-64 (91)
29 PRK14426 acylphosphatase; Prov 91.1 1.8 3.9E-05 27.9 6.8 53 28-81 9-61 (92)
30 PRK14422 acylphosphatase; Prov 90.7 2.3 5E-05 27.6 7.1 54 27-81 10-63 (93)
31 PRK14432 acylphosphatase; Prov 90.5 2.2 4.7E-05 27.7 6.9 53 28-81 7-60 (93)
32 PRK14442 acylphosphatase; Prov 90.4 2.1 4.5E-05 27.6 6.7 53 28-81 9-61 (91)
33 PRK14433 acylphosphatase; Prov 90.4 1.8 4E-05 27.7 6.4 53 28-81 6-58 (87)
34 PRK14449 acylphosphatase; Prov 90.2 2.5 5.3E-05 27.1 6.9 54 27-81 7-60 (90)
35 PRK14428 acylphosphatase; Prov 90.1 2.4 5.3E-05 27.9 6.9 54 27-81 12-65 (97)
36 PRK14435 acylphosphatase; Prov 90.0 2.1 4.6E-05 27.5 6.5 53 28-81 7-59 (90)
37 PRK14438 acylphosphatase; Prov 90.0 2.2 4.7E-05 27.5 6.5 54 27-81 7-60 (91)
38 PRK14437 acylphosphatase; Prov 90.0 2 4.4E-05 28.8 6.6 54 27-80 27-82 (109)
39 PRK14429 acylphosphatase; Prov 90.0 2.3 4.9E-05 27.3 6.6 55 28-83 7-63 (90)
40 PF01873 eIF-5_eIF-2B: Domain 89.8 0.54 1.2E-05 32.4 3.7 57 20-81 26-88 (125)
41 PRK14421 acylphosphatase; Prov 89.8 2.4 5.3E-05 28.0 6.7 52 28-80 9-60 (99)
42 PRK14427 acylphosphatase; Prov 89.5 2.4 5.2E-05 27.5 6.5 54 27-81 10-63 (94)
43 PRK14445 acylphosphatase; Prov 89.4 2.3 4.9E-05 27.4 6.3 53 28-81 9-61 (91)
44 PRK14430 acylphosphatase; Prov 89.1 3 6.5E-05 27.0 6.7 52 28-79 9-62 (92)
45 PRK14423 acylphosphatase; Prov 88.7 3.1 6.7E-05 26.8 6.5 53 28-81 10-62 (92)
46 PRK14436 acylphosphatase; Prov 88.6 3.8 8.2E-05 26.4 6.9 53 28-81 9-61 (91)
47 PRK14440 acylphosphatase; Prov 88.3 3.6 7.8E-05 26.5 6.6 53 28-81 8-60 (90)
48 PRK14447 acylphosphatase; Prov 88.1 3.7 8E-05 26.7 6.6 53 28-81 9-62 (95)
49 PRK14452 acylphosphatase; Prov 87.7 4.9 0.00011 26.9 7.2 52 27-79 24-75 (107)
50 PRK14441 acylphosphatase; Prov 87.6 4.1 9E-05 26.3 6.6 53 27-80 9-61 (93)
51 PF00708 Acylphosphatase: Acyl 87.5 4.4 9.5E-05 25.6 6.6 53 28-81 9-61 (91)
52 PRK14431 acylphosphatase; Prov 87.1 4.6 9.9E-05 26.0 6.6 55 28-84 7-63 (89)
53 PRK14448 acylphosphatase; Prov 86.7 5.6 0.00012 25.6 6.8 54 27-81 6-59 (90)
54 PRK14424 acylphosphatase; Prov 86.1 6.1 0.00013 25.7 6.8 54 26-80 10-63 (94)
55 COG1254 AcyP Acylphosphatases 74.6 21 0.00045 23.3 7.0 54 27-81 8-61 (92)
56 PF00691 OmpA: OmpA family; I 69.8 3.2 6.9E-05 25.7 1.6 22 72-94 56-77 (97)
57 PF08869 XisI: XisI protein; 62.1 7.6 0.00016 26.4 2.3 28 64-92 67-95 (111)
58 TIGR02802 Pal_lipo peptidoglyc 60.3 5.7 0.00012 25.2 1.4 23 72-95 57-79 (104)
59 COG1601 GCD7 Translation initi 58.4 17 0.00036 26.0 3.6 53 25-81 42-100 (151)
60 TIGR02433 lysidine_TilS_C tRNA 56.7 14 0.0003 20.3 2.5 25 62-86 9-34 (47)
61 cd04885 ACT_ThrD-I Tandem C-te 51.2 25 0.00054 20.7 3.1 21 64-84 43-64 (68)
62 PF11388 DotA: Phagosome traff 51.1 9.1 0.0002 25.7 1.2 27 29-57 4-31 (105)
63 PF14527 LAGLIDADG_WhiA: WhiA 50.4 34 0.00074 22.0 3.9 48 43-91 3-52 (93)
64 PF06857 ACP: Malonate decarbo 49.0 58 0.0013 21.0 4.7 39 54-93 19-65 (87)
65 PF09840 DUF2067: Uncharacteri 47.3 62 0.0013 23.7 5.2 46 32-78 5-50 (190)
66 COG4465 CodY Pleiotropic trans 46.6 37 0.0008 26.2 4.0 56 32-88 22-78 (261)
67 PF06925 MGDG_synth: Monogalac 45.3 20 0.00044 24.7 2.3 23 72-95 145-167 (169)
68 cd04906 ACT_ThrD-I_1 First of 44.8 45 0.00097 20.6 3.7 21 64-84 45-67 (85)
69 PF00381 PTS-HPr: PTS HPr comp 43.8 76 0.0016 19.5 4.7 18 64-81 62-79 (84)
70 TIGR03350 type_VI_ompA type VI 42.6 15 0.00033 24.6 1.3 23 72-95 90-112 (137)
71 COG2885 OmpA Outer membrane pr 41.6 26 0.00057 24.7 2.5 57 38-95 102-162 (190)
72 cd07185 OmpA_C-like Peptidogly 41.0 19 0.00041 22.3 1.5 23 72-95 59-81 (106)
73 PRK10802 peptidoglycan-associa 38.8 18 0.0004 25.8 1.3 23 72-95 126-148 (173)
74 KOG3360|consensus 38.0 1.2E+02 0.0027 20.2 6.0 57 34-91 19-77 (98)
75 PRK14980 DNA-directed RNA poly 36.9 48 0.001 23.1 3.1 27 6-32 69-95 (127)
76 TIGR00647 MG103 conserved hypo 36.9 2E+02 0.0044 22.4 7.1 42 43-84 100-145 (279)
77 PRK05177 minC septum formation 36.7 96 0.0021 23.2 5.0 60 21-84 14-78 (239)
78 PRK05412 putative nucleotide-b 36.5 63 0.0014 23.4 3.8 53 24-82 92-148 (161)
79 PRK10897 phosphohistidinoprote 35.8 1.2E+02 0.0026 19.4 5.9 39 35-81 43-81 (90)
80 KOG4616|consensus 35.5 8.1 0.00018 26.8 -0.9 35 12-46 94-128 (137)
81 cd02394 vigilin_like_KH K homo 34.4 91 0.002 17.6 3.9 36 42-78 22-57 (62)
82 TIGR03789 pdsO proteobacterial 34.3 25 0.00055 26.7 1.5 22 73-95 193-214 (239)
83 TIGR03595 Obg_CgtA_exten Obg f 34.2 45 0.00098 20.3 2.4 20 75-94 45-64 (69)
84 PRK04021 hypothetical protein; 32.2 1.4E+02 0.0031 19.3 5.2 42 38-79 48-90 (92)
85 PRK05863 sulfur carrier protei 31.6 65 0.0014 19.0 2.8 17 74-91 17-33 (65)
86 PF09581 Spore_III_AF: Stage I 31.4 29 0.00064 24.3 1.4 23 70-93 164-187 (188)
87 PF09776 Mitoc_L55: Mitochondr 30.9 5.9 0.00013 27.2 -2.2 32 16-47 85-116 (116)
88 PF15538 Toxin_61: Putative to 30.6 28 0.00062 25.1 1.2 39 44-90 4-42 (157)
89 PF06968 BATS: Biotin and Thia 30.3 34 0.00073 21.8 1.4 37 45-86 56-93 (93)
90 PF06018 CodY: CodY GAF-like d 28.2 1E+02 0.0022 22.5 3.7 52 35-87 20-72 (177)
91 COG1872 Uncharacterized conser 27.9 73 0.0016 21.4 2.7 25 67-92 47-72 (102)
92 cd04883 ACT_AcuB C-terminal AC 27.9 89 0.0019 17.8 2.9 22 63-84 45-66 (72)
93 PF00013 KH_1: KH domain syndr 27.8 1.2E+02 0.0026 17.0 4.2 37 41-79 21-57 (60)
94 PF11324 DUF3126: Protein of u 27.6 1.2E+02 0.0026 18.7 3.4 34 37-70 1-37 (63)
95 cd04909 ACT_PDH-BS C-terminal 27.3 85 0.0018 17.9 2.7 22 63-84 45-67 (69)
96 PRK14454 ribosomal RNA large s 27.1 1.6E+02 0.0035 23.2 5.0 59 23-84 249-316 (342)
97 COG1918 FeoA Fe2+ transport sy 26.9 1.4E+02 0.0031 18.6 3.9 28 63-92 13-40 (75)
98 PRK10510 putative outer membra 26.9 47 0.001 24.6 1.8 23 72-95 169-191 (219)
99 cd04882 ACT_Bt0572_2 C-termina 26.6 98 0.0021 17.1 2.9 19 64-84 44-62 (65)
100 PRK09555 feoA ferrous iron tra 26.2 1.5E+02 0.0033 18.2 3.8 28 66-93 13-40 (74)
101 PF10281 Ish1: Putative stress 26.1 77 0.0017 16.8 2.2 16 73-88 7-22 (38)
102 PTZ00423 glideosome-associated 25.7 47 0.001 24.2 1.6 17 38-54 154-170 (193)
103 cd04908 ACT_Bt0572_1 N-termina 25.5 90 0.0019 17.9 2.6 22 63-84 41-62 (66)
104 COG1647 Esterase/lipase [Gener 25.2 1.8E+02 0.0039 22.4 4.8 71 20-94 12-91 (243)
105 PF05798 Phage_FRD3: Bacteriop 25.2 1.3E+02 0.0028 19.0 3.3 49 38-87 11-64 (75)
106 PF11734 TilS_C: TilS substrat 24.7 50 0.0011 20.0 1.4 25 61-85 8-33 (74)
107 PF09383 NIL: NIL domain; Int 24.5 70 0.0015 19.1 2.0 22 63-84 48-71 (76)
108 PF00543 P-II: Nitrogen regula 24.5 63 0.0014 20.6 1.9 20 65-84 3-22 (102)
109 COG2859 Uncharacterized protei 24.4 38 0.00082 26.0 1.0 30 62-92 58-98 (237)
110 PF09269 DUF1967: Domain of un 23.5 66 0.0014 19.6 1.8 20 75-94 45-64 (69)
111 PF07521 RMMBL: RNA-metabolisi 23.1 87 0.0019 17.1 2.1 21 72-94 20-40 (43)
112 PRK13992 minC septum formation 22.9 3.1E+02 0.0067 20.0 6.0 52 32-84 15-71 (205)
113 KOG1143|consensus 22.7 2.4E+02 0.0051 23.9 5.3 59 28-92 106-168 (591)
114 PF15643 Tox-PL-2: Papain fold 22.5 92 0.002 20.9 2.4 22 71-93 24-45 (100)
115 PF04310 MukB: MukB N-terminal 22.4 1.3E+02 0.0029 22.9 3.6 28 14-41 103-135 (227)
116 PF02594 DUF167: Uncharacteris 22.4 1.3E+02 0.0029 18.7 3.1 23 69-92 39-62 (77)
117 PTZ00450 macrophage migration 22.4 1E+02 0.0022 20.5 2.7 22 71-93 77-99 (113)
118 PRK06667 motB flagellar motor 22.3 81 0.0017 23.6 2.4 24 72-95 190-213 (252)
119 PF11608 Limkain-b1: Limkain b 22.1 2.4E+02 0.0053 18.6 5.3 33 26-58 4-37 (90)
120 PF04746 DUF575: Protein of un 22.0 86 0.0019 21.0 2.2 27 68-94 65-93 (101)
121 PF12221 HflK_N: Bacterial mem 21.9 71 0.0015 18.0 1.5 17 35-51 20-36 (42)
122 PRK09039 hypothetical protein; 21.6 58 0.0013 25.7 1.5 23 72-95 293-315 (343)
123 TIGR01375 soxG sarcosine oxida 21.5 2.7E+02 0.0058 18.8 4.8 43 39-81 54-97 (152)
124 PRK00339 minC septum formation 21.5 2.8E+02 0.0062 20.9 5.2 62 20-85 16-84 (249)
125 PF03958 Secretin_N: Bacterial 21.2 1.9E+02 0.0042 17.0 3.8 46 35-81 8-75 (82)
126 PRK12863 YciI-like protein; Re 21.0 1.9E+02 0.0041 18.1 3.6 48 46-93 32-85 (94)
127 KOG2382|consensus 21.0 2.7E+02 0.0058 22.2 5.1 73 23-95 52-130 (315)
128 PRK06934 flavodoxin; Provision 20.2 3.7E+02 0.008 20.1 5.5 42 38-86 173-221 (221)
129 COG2104 ThiS Sulfur transfer p 20.2 1.7E+02 0.0037 17.8 3.2 25 63-90 10-34 (68)
130 cd06194 FNR_N-term_Iron_sulfur 20.2 82 0.0018 22.1 2.0 32 63-95 188-221 (222)
131 PF01187 MIF: Macrophage migra 20.0 78 0.0017 20.6 1.7 22 71-93 75-97 (114)
No 1
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic. Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
Probab=99.97 E-value=3.5e-32 Score=184.30 Aligned_cols=84 Identities=68% Similarity=1.063 Sum_probs=80.9
Q ss_pred CceEEEEEeeCCceEEEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCCCCCCcEE
Q psy4461 12 DLLLLSLLRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLK 91 (95)
Q Consensus 12 ~~~iri~~R~grK~vT~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~~p~~~I~ 91 (95)
.+|||+++|+|||.||+|+||+..+|+++|||.||++|||||||+++++++.+|+||||||++|++||.++||+++++|+
T Consensus 27 ~I~Iri~qR~grK~VTiI~Gl~~~~dlk~l~K~lKkk~~cGGsVk~~~~~~~~IelQGD~re~v~~~L~~~g~~~~~~i~ 106 (110)
T TIGR01160 27 YIHIRIQQRNGRKTLTTVQGLPKEYDLKKIVKALKKEFACNGTVIEDPEMGEVIQLQGDQRKNVCEFLISQGLLKKDQIK 106 (110)
T ss_pred eEEEEEEEccCCccEEEEeccCChHHHHHHHHHHHHHhCCCceEEeCCCCCCEEEEeCcHHHHHHHHHHHcCCCCHHHee
Confidence 48999999999999999999998889999999999999999999998888889999999999999999999999999999
Q ss_pred EcCC
Q psy4461 92 VHGF 95 (95)
Q Consensus 92 vhg~ 95 (95)
+|||
T Consensus 107 vhg~ 110 (110)
T TIGR01160 107 IHGF 110 (110)
T ss_pred ecCC
Confidence 9997
No 2
>KOG1770|consensus
Probab=99.96 E-value=2.2e-29 Score=169.12 Aligned_cols=84 Identities=64% Similarity=1.078 Sum_probs=82.1
Q ss_pred CceEEEEEeeCCceEEEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCCCCCCcEE
Q psy4461 12 DLLLLSLLRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLK 91 (95)
Q Consensus 12 ~~~iri~~R~grK~vT~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~~p~~~I~ 91 (95)
-+||||+||+|||++|+|+|++..+|++.+.+.|||.|||+|+|.++|+.|+.|++|||||.+|.+||...|++.+++|+
T Consensus 29 ~ihIRIQQRnGrKtlTtVQgi~~Eyd~kril~~lKKef~CnGtvved~e~gevIQLqGDqR~nv~~fl~~~g~~k~~~ik 108 (112)
T KOG1770|consen 29 YIHIRIQQRNGRKTLTTVQGIPMEYDLKKILKSLKKEFACNGTVVEDPEYGEVIQLQGDQRKNVCQFLVQVGLVKKDNIK 108 (112)
T ss_pred eEEEEEEeeCCceEEEEecCChhhhhHHHHHHHHHHhccCCCeEecCcccCceEEeccchhhhHHHHHHHhcccccccee
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCC
Q psy4461 92 VHGF 95 (95)
Q Consensus 92 vhg~ 95 (95)
||||
T Consensus 109 ihGf 112 (112)
T KOG1770|consen 109 IHGF 112 (112)
T ss_pred ecCC
Confidence 9998
No 3
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=5.6e-29 Score=167.18 Aligned_cols=77 Identities=32% Similarity=0.536 Sum_probs=71.4
Q ss_pred cCceEEEEEeeCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCCCCCCc
Q psy4461 11 CDLLLLSLLRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQ 89 (95)
Q Consensus 11 ~~~~iri~~R~grK~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~~p~~~ 89 (95)
.-++|++++|+++|.||+|+||+. .+|+++||++||++|||||||+++ +|+||||||++|.+||.++|| |+++
T Consensus 27 ~~V~I~~e~rr~gK~VTiI~Gld~~~~dlk~Lak~LKk~cacGGtvk~~-----~IeiQGdhr~~v~~~L~~~G~-k~k~ 100 (104)
T COG0023 27 QIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTVKDG-----EIEIQGDHRDKVKELLIKKGF-KVKN 100 (104)
T ss_pred CeEEEEEEeecCCcEEEEEeCcccchhhHHHHHHHHHHHcCCCceecCC-----EEEEeChHHHHHHHHHHHcCC-chhh
Confidence 345666678999999999999999 999999999999999999999997 999999999999999999999 9999
Q ss_pred EEEc
Q psy4461 90 LKVH 93 (95)
Q Consensus 90 I~vh 93 (95)
|.+|
T Consensus 101 i~~~ 104 (104)
T COG0023 101 IGIE 104 (104)
T ss_pred cccC
Confidence 9875
No 4
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation. This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
Probab=99.96 E-value=1e-28 Score=157.96 Aligned_cols=75 Identities=47% Similarity=0.710 Sum_probs=71.0
Q ss_pred ceEEEEEeeCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCCCCCCcEE
Q psy4461 13 LLLLSLLRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLK 91 (95)
Q Consensus 13 ~~iri~~R~grK~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~~p~~~I~ 91 (95)
++|++++|+|||.||+|+||+. ..|++++|+.||++|||||||++. +|+|||||+++|.+||.++|| ++++|+
T Consensus 2 V~I~~e~R~~~K~VT~I~Gl~~~~~dlk~l~k~lKk~~~cggtv~~~-----~I~lQGD~r~~v~~~L~~~g~-~~~~i~ 75 (77)
T cd00474 2 VRIRIQQRNGGKTVTTVQGLDLEYADLKKLAKELKKKCACGGTVKDE-----VIELQGDQRKKIKEFLIKMGF-AKDNIK 75 (77)
T ss_pred EEEEEEECCCCccEEEEECCCCchHhHHHHHHHHHHHcCCCcEEecC-----EEEEeCcHHHHHHHHHHHcCC-CHHHeE
Confidence 5789999999999999999998 789999999999999999999984 999999999999999999999 559999
Q ss_pred Ec
Q psy4461 92 VH 93 (95)
Q Consensus 92 vh 93 (95)
||
T Consensus 76 i~ 77 (77)
T cd00474 76 IH 77 (77)
T ss_pred eC
Confidence 98
No 5
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=99.94 E-value=4.9e-27 Score=156.53 Aligned_cols=81 Identities=33% Similarity=0.568 Sum_probs=72.7
Q ss_pred ccccccc--------CceEEEEEeeCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHH
Q psy4461 5 LKYLYVC--------DLLLLSLLRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENI 75 (95)
Q Consensus 5 ~~~~~~~--------~~~iri~~R~grK~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v 75 (95)
|.++|+| .++|+.++|+|+|.||+|+||+. .+|+++||+.||++|||||||+++ +|+|||||+++|
T Consensus 10 ~~~~c~c~~~~~~~~~i~I~~ekr~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsvk~~-----~I~iQGD~r~~v 84 (99)
T PRK00939 10 PKELCVCEEVAKEQQRIKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTVKDG-----RIELQGDHRERV 84 (99)
T ss_pred CHHHccCcccCccCceEEEEEEecCCCceEEEEeCCCCcchhHHHHHHHHHHHhCCCceEECC-----EEEEeCcHHHHH
Confidence 4566655 45778889999999999999997 999999999999999999999874 899999999999
Q ss_pred HHHHHHcCCCCCCcEE
Q psy4461 76 CQWLTKTGLAKPEQLK 91 (95)
Q Consensus 76 ~~~L~~~G~~p~~~I~ 91 (95)
++||.++|| |.++|+
T Consensus 85 ~~~L~~~G~-~~~~i~ 99 (99)
T PRK00939 85 KELLIKMGF-SEENIE 99 (99)
T ss_pred HHHHHHcCC-ChhhcC
Confidence 999999999 888874
No 6
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []. SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.
Probab=99.93 E-value=5.5e-26 Score=146.05 Aligned_cols=77 Identities=38% Similarity=0.585 Sum_probs=66.2
Q ss_pred cCceEEEEEeeCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCCCCC
Q psy4461 11 CDLLLLSLLRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKP 87 (95)
Q Consensus 11 ~~~~iri~~R~grK~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~~p~ 87 (95)
..++|++++|+|||.||+|.||+. ++|+++||++|+++|||||||.++++++.+|+|||||+++|.+||.++|++|+
T Consensus 5 ~~I~I~~e~r~~~K~vT~V~gl~~~~~d~~~lak~lkk~~ac~~sv~~~~~k~~~I~iQGd~~~~i~~~L~~~~~~~k 82 (83)
T PF01253_consen 5 PKIHIRVEKRRGRKFVTIVSGLELFGIDLKELAKELKKKFACGGSVTKDPGKGEEIQIQGDHRDEIKDLLVEKGGIPK 82 (83)
T ss_dssp TCEEEEEEESSSSEEEEEEES--STTSHHHHHHHHHHHHHTS-EEEEE-TTTSSEEEEESS-HHHHHHHHHHHCSSE-
T ss_pred CEEEEEEEeCcCCeEEEEEECCcccccCHHHHHHHHHHhccCceEEeecCCCCCEEEECCcHHHHHHHHHHHhCCCCC
Confidence 467899999999999999999998 99999999999999999999999875578999999999999999999888665
No 7
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic. This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
Probab=99.91 E-value=4.2e-24 Score=142.72 Aligned_cols=72 Identities=31% Similarity=0.555 Sum_probs=64.3
Q ss_pred ceEEEEEe-eCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCCCCCCcE
Q psy4461 13 LLLLSLLR-NGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQL 90 (95)
Q Consensus 13 ~~iri~~R-~grK~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~~p~~~I 90 (95)
++|++++| +|+|.||+|+||+. ..|++++|+.||++||||||++++ +|+|||||+++|.+||.++|| |..++
T Consensus 26 i~i~~e~rgr~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtvk~~-----~IeiQGD~~~~v~~~L~~~G~-~~k~~ 99 (101)
T TIGR01158 26 VRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTVKDG-----VIEIQGDHRDRVKDLLEKKGF-KVKLI 99 (101)
T ss_pred EEEEEEEecCCCCEEEEEeCCcCchhhHHHHHHHHHHHhcCCeeEeCC-----EEEEeCcHHHHHHHHHHHcCC-Ceeec
Confidence 35566677 78999999999998 899999999999999999999875 999999999999999999999 65543
No 8
>TIGR01159 DRP1 density-regulated protein DRP1. This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
Probab=99.90 E-value=5.5e-24 Score=153.76 Aligned_cols=82 Identities=23% Similarity=0.312 Sum_probs=75.2
Q ss_pred cCceEEEEEeeCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH-cCCCCCC
Q psy4461 11 CDLLLLSLLRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK-TGLAKPE 88 (95)
Q Consensus 11 ~~~~iri~~R~grK~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~-~G~~p~~ 88 (95)
..++|++++|+|||.||+|+||+. ++|++++||.|+++||||+||.+++.++.+|+|||||+++|.+||.+ |.-+|++
T Consensus 89 ~~V~I~~~~R~krK~VT~V~GLe~f~idlk~laK~lkkkfacG~SV~k~~~~~~eI~IQGD~~~~v~e~L~~~~~~v~e~ 168 (173)
T TIGR01159 89 QKVTIKREPRTKRKFVTVIKGLETFDIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVMDDIEDYIHEKWPEVGDK 168 (173)
T ss_pred CeEEEEEEecCCCceEEEEeCCcCCCcCHHHHHHHHHHHhCCCCccccCCCCCCEEEecCCHHHHHHHHHHHHcCCCCHH
Confidence 467888889999999999999999 99999999999999999999999887789999999999999999998 6445999
Q ss_pred cEEE
Q psy4461 89 QLKV 92 (95)
Q Consensus 89 ~I~v 92 (95)
+|+.
T Consensus 169 ~I~~ 172 (173)
T TIGR01159 169 DIKD 172 (173)
T ss_pred Heee
Confidence 9974
No 9
>PRK06824 translation initiation factor Sui1; Validated
Probab=99.90 E-value=7.7e-24 Score=145.06 Aligned_cols=75 Identities=28% Similarity=0.414 Sum_probs=65.9
Q ss_pred ccccccc--------CceEEE--E-EeeCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchh
Q psy4461 5 LKYLYVC--------DLLLLS--L-LRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQR 72 (95)
Q Consensus 5 ~~~~~~~--------~~~iri--~-~R~grK~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~ 72 (95)
|+++|+| +..|+| + +++++|.||+|+||+. ..|+++|||.||++|||||||+++ +|+||||||
T Consensus 25 ~~~~C~C~~~~~~~~~~~vri~~~~kgr~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtvkd~-----~IeiQGD~r 99 (118)
T PRK06824 25 PVAACICKQAAAPAGDGIVRVRRETKGRGGKTVTVITGVPLAEDALKELAKELKRRCGTGGTLKDG-----VIEIQGDHV 99 (118)
T ss_pred chhhhccccccCCCcCceEEEEEEEccCCCceEEEEeCCcCCHHHHHHHHHHHHHHhcCCceEecC-----EEEEcCcHH
Confidence 6677766 335555 3 3467899999999997 899999999999999999999985 999999999
Q ss_pred HHHHHHHHHcCC
Q psy4461 73 ENICQWLTKTGL 84 (95)
Q Consensus 73 ~~v~~~L~~~G~ 84 (95)
++|.+||.++||
T Consensus 100 ~~v~~~L~~~G~ 111 (118)
T PRK06824 100 ELLLAELLKRGF 111 (118)
T ss_pred HHHHHHHHHCCC
Confidence 999999999999
No 10
>PRK09019 translation initiation factor Sui1; Validated
Probab=99.90 E-value=2.4e-23 Score=140.75 Aligned_cols=69 Identities=30% Similarity=0.524 Sum_probs=63.8
Q ss_pred cCceEEEE-EeeCC--ceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCC
Q psy4461 11 CDLLLLSL-LRNGR--KTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGL 84 (95)
Q Consensus 11 ~~~~iri~-~R~gr--K~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~ 84 (95)
.+..||++ +|+|| |.||+|+||+. ..|+++|||.||++|||||||+++ +|+||||||++|.+||.++||
T Consensus 29 ~~~~vri~~~r~gRkGK~VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtvk~~-----~IelQGD~r~~v~~~L~~~Gf 101 (108)
T PRK09019 29 GDGIVRIQRQTSGRKGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAVKDG-----VIEIQGDKRDLLKSLLEAKGM 101 (108)
T ss_pred cCceEEEEEecCCCCCCeEEEEeCCcCCHHHHHHHHHHHHHHhcCCCeEEcC-----EEEEcCcHHHHHHHHHHHCCC
Confidence 57799998 66554 69999999997 899999999999999999999985 999999999999999999999
No 11
>PRK07451 translation initiation factor Sui1; Validated
Probab=99.89 E-value=3.7e-23 Score=141.14 Aligned_cols=71 Identities=31% Similarity=0.462 Sum_probs=64.9
Q ss_pred cccCceEEEE-EeeCC--ceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCC
Q psy4461 9 YVCDLLLLSL-LRNGR--KTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGL 84 (95)
Q Consensus 9 ~~~~~~iri~-~R~gr--K~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~ 84 (95)
-..+++|||+ +|+|| |.||+|+||+. ..|+++|||.||++||||||++++ +|+||||||++|.+||.++||
T Consensus 34 ~~~~~~irI~~~r~gR~GK~VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtvkd~-----~IelQGD~r~~v~~~L~~~Gf 108 (115)
T PRK07451 34 PPQQQNLRVQATRSGRKGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTVKDN-----TIEIQGDHRQKILEILIKLGY 108 (115)
T ss_pred CccceeEEEEEEecCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCceEcCC-----EEEEcCcHHHHHHHHHHHCCC
Confidence 3468899998 56555 89999999998 799999999999999999999986 999999999999999999999
No 12
>KOG3239|consensus
Probab=99.71 E-value=3.2e-17 Score=118.90 Aligned_cols=80 Identities=25% Similarity=0.464 Sum_probs=71.5
Q ss_pred ceEEEEEeeCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH-cCCCCCCcE
Q psy4461 13 LLLLSLLRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK-TGLAKPEQL 90 (95)
Q Consensus 13 ~~iri~~R~grK~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~-~G~~p~~~I 90 (95)
.+|....|..||.||+|+||+. ++|++++||.|.++||||+||+.++...++|.||||..+.|.+|+.+ |.-+|++++
T Consensus 103 V~I~r~~R~KrK~VT~V~GL~~FdIdlk~aaK~fa~KFAtGaSVtk~a~kkdEIvIQGDv~dDi~d~I~ekw~ev~ed~~ 182 (193)
T KOG3239|consen 103 VIIKREARTKRKSVTVVKGLETFDIDLKKAAKFFAQKFATGASVTKNAEKKDEIVIQGDVKDDIFDFIPEKWPEVPEDDV 182 (193)
T ss_pred eEeeecccCCceeEEEEechhhccccHHHHHHHHHHhhccCccccCCCCccceEEEeccchHHHHHHHHHhcccCCcccc
Confidence 3444456999999999999999 99999999999999999999999998889999999999999999987 777798854
Q ss_pred EE
Q psy4461 91 KV 92 (95)
Q Consensus 91 ~v 92 (95)
.|
T Consensus 183 ~I 184 (193)
T KOG3239|consen 183 KI 184 (193)
T ss_pred ee
Confidence 43
No 13
>KOG2522|consensus
Probab=99.58 E-value=2.3e-15 Score=121.93 Aligned_cols=81 Identities=26% Similarity=0.417 Sum_probs=74.9
Q ss_pred ccCceEEEEEeeCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCC-ceEEEEcCchhHHHHHHHHH-cCCCC
Q psy4461 10 VCDLLLLSLLRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEY-GEVLQLQGDQRENICQWLTK-TGLAK 86 (95)
Q Consensus 10 ~~~~~iri~~R~grK~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~-~~~I~vQGD~~~~v~~~L~~-~G~~p 86 (95)
.+++.|..++|.|||.||+|+||+. ++|++.+|..|++.|+||+||.+.|+. +-+++|||+|.+.|+++|.+ +|+ |
T Consensus 466 ~ppi~i~te~RagnKkVT~V~nle~fgiDp~S~aa~Lqk~c~aSTtv~e~pg~kg~eVqvQGnqih~iadlL~k~ygi-p 544 (560)
T KOG2522|consen 466 LPPIKIITEMRAGNKKVTRVSNLEVFGIDPESLAADLQKICSASTTVSESPGFKGAEVQVQGNQIHSIADLLNKSYGI-P 544 (560)
T ss_pred CCceEEeehhhccCceEEEEccceeeccCHHHHHHHHHHHeeeeeecccCCCCCCceEEEecchhhHHHHHHHHhhCC-C
Confidence 4677888899999999999999999 999999999999999999999998864 57999999999999999998 899 8
Q ss_pred CCcEE
Q psy4461 87 PEQLK 91 (95)
Q Consensus 87 ~~~I~ 91 (95)
+..|+
T Consensus 545 kK~I~ 549 (560)
T KOG2522|consen 545 KKWID 549 (560)
T ss_pred HHHHh
Confidence 88875
No 14
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=98.54 E-value=4.8e-07 Score=58.80 Aligned_cols=61 Identities=20% Similarity=0.422 Sum_probs=49.2
Q ss_pred EeeCCceEEEEecCCCcccHHHHHHHHhhhccc------ceEEeecCCCceEEEEcCchhHHHHHHHHHcCC
Q psy4461 19 LRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC------NGTVIEHPEYGEVLQLQGDQRENICQWLTKTGL 84 (95)
Q Consensus 19 ~R~grK~vT~I~Gl~~~~dl~~lak~lkk~~ac------ggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~ 84 (95)
++.|++.+|+|+.++. |+..|.++|++.|.= ...|.+. ...|+|+|||.+.|++||.+.||
T Consensus 21 k~~g~~~~T~IrkI~G--D~~aL~~dL~~~l~~~~~~~~~~~V~~~---~g~i~IkG~~~~~Vk~wL~~~GF 87 (87)
T PF05046_consen 21 KNGGNRKITVIRKIEG--DIWALKKDLRKFLGEKPKKKIDVRVNEL---TGHIEIKGDHVEEVKKWLLEKGF 87 (87)
T ss_pred eCCCcEeEEEEEeecC--CHHHHHHHHHHHhhhhcCCCcceEEeec---CCEEEEcCccHHHHHHHHHHCcC
Confidence 3457899999999988 678888888887753 3445542 46999999999999999999997
No 15
>KOG4034|consensus
Probab=96.76 E-value=0.0023 Score=46.28 Aligned_cols=61 Identities=23% Similarity=0.463 Sum_probs=41.2
Q ss_pred eeCCceEEEEecCCCc-----ccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCC
Q psy4461 20 RNGRKTLTTVQGLSSE-----YDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGL 84 (95)
Q Consensus 20 R~grK~vT~I~Gl~~~-----~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~ 84 (95)
++|+|.+|+|+.++.+ .|+.+..+..-++-=| +-|.+. ...|.+-|||.+.|.+||.++||
T Consensus 104 ~~G~k~lT~IRkVeGDi~aLe~DL~s~L~~~~~~s~~-t~Vnel---sgqI~~~g~~v~~vr~~L~eKGF 169 (169)
T KOG4034|consen 104 QRGNKILTVIRKVEGDIWALENDLRSTLEMSPKKSYA-THVNEL---SGQIVLKGNHVDTVREWLQEKGF 169 (169)
T ss_pred cCCcEEEEEEEeecccHHHHHHHHHHHHhhccCCChh-hhhhhh---cceEEEeCChHHHHHHHHHHccC
Confidence 4589999999999973 2333333333222222 223332 35899999999999999999997
No 16
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=94.99 E-value=0.061 Score=37.75 Aligned_cols=52 Identities=23% Similarity=0.348 Sum_probs=41.8
Q ss_pred EeeCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHH
Q psy4461 19 LRNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQ 77 (95)
Q Consensus 19 ~R~grK~vT~I~Gl~~-----~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~ 77 (95)
.+-|+| |+|.||.+ .=+++.+++.|.+.+|+.|++ ++ ....|+|.+..+..+
T Consensus 36 ~~eG~k--Tvi~Nf~~I~~~L~R~~~hv~ky~~~ELgt~g~i-~~----~~lii~G~~~~~~i~ 92 (138)
T PRK03988 36 RIEGNR--TIIRNFKEIADRLNRDPKHVAKFLLKELGTAGNI-EG----GRLILQGKFSPRVIN 92 (138)
T ss_pred EEEcCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCceee-cC----CEEEEEEeeCHHHHH
Confidence 356655 99999976 345999999999999999999 32 599999998775544
No 17
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=94.92 E-value=0.063 Score=37.45 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=41.4
Q ss_pred eeCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHH
Q psy4461 20 RNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQ 77 (95)
Q Consensus 20 R~grK~vT~I~Gl~~-----~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~ 77 (95)
+-|+| |+|.||.+ .=+++.+.|.|.+.+|+.|++.+ ....|+|.+.....+
T Consensus 32 ~eG~k--Tvi~Nf~~Ia~~L~R~~~~v~ky~~~ELgt~g~i~~-----~rlii~G~~~~~~i~ 87 (133)
T TIGR00311 32 IEGNR--TIIQNFREVAKALNRDEQHLLKYLLKELGTAGNLEG-----GRLILQGKFTHFLLN 87 (133)
T ss_pred EEcCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCCceecC-----CEEEEEeecCHHHHH
Confidence 45655 99999976 34599999999999999999953 489999998875554
No 18
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=94.22 E-value=0.14 Score=34.57 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=44.6
Q ss_pred EeeCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHH-HHHH
Q psy4461 19 LRNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQ-WLTK 81 (95)
Q Consensus 19 ~R~grK~vT~I~Gl~~-----~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~-~L~~ 81 (95)
.+-|+| -|+|.||.+ .=+++.+.|.|.+.+|+.|++.+. ....|+|.+..+-.+ .|.+
T Consensus 12 ~~eG~~-kTvi~Nf~~I~~~L~R~p~hv~kyl~~ELgt~g~id~~----~rlii~G~~~~~~i~~~l~~ 75 (110)
T smart00653 12 LREGKG-KTVIVNFADIAKALNRPPDHVLKFLLAELGTQGSIDGK----GRLIVNGRFTPKKLQDLLRR 75 (110)
T ss_pred EEEcCC-eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeECCC----CeEEEEEeeCHHHHHHHHHH
Confidence 345555 789999976 345999999999999999999763 489999998775444 4433
No 19
>PRK14434 acylphosphatase; Provisional
Probab=93.80 E-value=0.49 Score=30.75 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=41.2
Q ss_pred EEecCCCcccHHHHHHHHhhhcc-cceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFA-CNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~a-cggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
.|.|.-.++-+-.....+.++++ =.|.|...+.+.-+|.+||+..+.|.+|+..
T Consensus 7 ~v~G~VQGVGFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~ 61 (92)
T PRK14434 7 IVSGRVQGVGFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQE 61 (92)
T ss_pred EEEEeecceeEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHH
Confidence 45676666667777888889999 9999998877668999999865555555544
No 20
>PRK14451 acylphosphatase; Provisional
Probab=93.62 E-value=0.48 Score=30.55 Aligned_cols=52 Identities=8% Similarity=0.084 Sum_probs=41.4
Q ss_pred EecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 29 VQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 29 I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
|+|.-.++-+-..++.+..+++-.|.|...+.+.-+|.+||+- +.|.+|+..
T Consensus 9 V~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 60 (89)
T PRK14451 9 ISGRVQGVWFRASAKKLAEQLMISGWARNLADGRVEVFACGKE-DKLEEFYTW 60 (89)
T ss_pred EEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEECH-HHHHHHHHH
Confidence 6777667778888999999999999999987777899999985 335554443
No 21
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=93.06 E-value=0.24 Score=36.44 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=42.3
Q ss_pred eeCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHH-HHHH
Q psy4461 20 RNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQ-WLTK 81 (95)
Q Consensus 20 R~grK~vT~I~Gl~~-----~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~-~L~~ 81 (95)
+-|+| |+|.||.+ .=+++.+.+.|...+++.|++.+ ....|+|.+...-.+ .|.+
T Consensus 33 ~eG~k--T~i~N~~~i~~~l~R~~~~~~ky~~~ELgt~~~~~~-----~~~ii~G~~~~~~i~~~l~~ 93 (201)
T PRK12336 33 IEGKT--TILTNFGEIADALNRDPDHLMKFLQRELGTAGKIEG-----GRAVFNGKFTEEDIQAAIDA 93 (201)
T ss_pred EEcCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCcceecC-----CEEEEEeeeCHHHHHHHHHH
Confidence 45543 99999976 34599999999999999999964 388999998765444 4433
No 22
>PRK14443 acylphosphatase; Provisional
Probab=92.41 E-value=0.86 Score=29.81 Aligned_cols=53 Identities=9% Similarity=0.228 Sum_probs=40.2
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
.|+|.-.++-+-..++.+..+++=.|.|...+.+.-+|.+||+-.. |.+|+..
T Consensus 9 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-l~~f~~~ 61 (93)
T PRK14443 9 RVTGFVQGVGFRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEEN-LNKFIDA 61 (93)
T ss_pred EEEEeeCCccCcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHH-HHHHHHH
Confidence 4566666666777888888999999999998777789999998433 4444443
No 23
>PRK14444 acylphosphatase; Provisional
Probab=92.13 E-value=1.3 Score=28.73 Aligned_cols=54 Identities=11% Similarity=0.150 Sum_probs=41.4
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
-+|+|.-.++-+-..+..+.+.++=+|.|+..+.+.-+|.+||+- ++|.+|+..
T Consensus 8 i~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 61 (92)
T PRK14444 8 VFISGRVQGVNFRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSR-PAVQKMISW 61 (92)
T ss_pred EEEEEeeCCcCcHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHH
Confidence 356777666777788888889999999999887666799999994 335555554
No 24
>PRK14439 acylphosphatase; Provisional
Probab=91.60 E-value=1.2 Score=32.35 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=44.2
Q ss_pred EEEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCch--hHHHHHHHHHcC
Q psy4461 26 LTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ--RENICQWLTKTG 83 (95)
Q Consensus 26 vT~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~--~~~v~~~L~~~G 83 (95)
--.|+|.-.++-+-..++.+..+++=.|.|...+.+.-+|++||+. .+...++|.+.|
T Consensus 78 ~i~VsGrVQGVGFR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~Ie~Fi~~L~~~g 137 (163)
T PRK14439 78 IAWVYGRVQGVGFRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGG 137 (163)
T ss_pred EEEEEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhCC
Confidence 3456787777778888999999999999999987777899999986 344444444434
No 25
>PRK14446 acylphosphatase; Provisional
Probab=91.47 E-value=1 Score=29.07 Aligned_cols=53 Identities=9% Similarity=0.025 Sum_probs=41.3
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
.|+|.-.++-+-.....+.++++=.|.|...+.+.-+|++||+-. .|.+|+..
T Consensus 7 ~v~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~l~~f~~~ 59 (88)
T PRK14446 7 VVSGVVQGVWYRASTRERAVALGLVGHARNQADGSVEVVAAGSAA-ALEALEAW 59 (88)
T ss_pred EEEEecCCeeEhHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHH-HHHHHHHH
Confidence 456766666677888899999999999999887779999999853 45555443
No 26
>PRK14420 acylphosphatase; Provisional
Probab=91.43 E-value=1.5 Score=28.10 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=39.9
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
.|+|.-.++-+-..+..+..+++=.|.|...+.+.-+|++||+- +.|.+|+..
T Consensus 7 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 59 (91)
T PRK14420 7 IVDGRVQGVGFRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPE-EALQLFLDA 59 (91)
T ss_pred EEEEeeCCcCChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECH-HHHHHHHHH
Confidence 45665555556667778888888999999887666899999984 666666655
No 27
>PRK14425 acylphosphatase; Provisional
Probab=91.20 E-value=1.1 Score=29.12 Aligned_cols=54 Identities=9% Similarity=0.155 Sum_probs=41.6
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchh--HHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQR--ENICQWLT 80 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~--~~v~~~L~ 80 (95)
-.|+|.-.++-+-...+.+..+++=.|.|+..+.+.-+|.+||+.. +...++|.
T Consensus 10 ~~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~ 65 (94)
T PRK14425 10 VRITGRVQGVGFRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFR 65 (94)
T ss_pred EEEEEeEecccchHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHh
Confidence 3456766666677888888899999999999877778999999754 55555555
No 28
>PRK14450 acylphosphatase; Provisional
Probab=91.11 E-value=1.7 Score=27.95 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=42.3
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCc-eEEEEcCc--hhHHHHHHHHHcC
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYG-EVLQLQGD--QRENICQWLTKTG 83 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~-~~I~vQGD--~~~~v~~~L~~~G 83 (95)
+|.|.-.++-+-..+..+..+++=.|.|...+.+. -+|.+||+ ..+...++|. .|
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~-~g 64 (91)
T PRK14450 7 IVKGKVQGVYFRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLR-SG 64 (91)
T ss_pred EEEEEecCcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh-hC
Confidence 46666666667788888889999999999877664 79999999 5566666665 44
No 29
>PRK14426 acylphosphatase; Provisional
Probab=91.06 E-value=1.8 Score=27.94 Aligned_cols=53 Identities=8% Similarity=0.025 Sum_probs=40.1
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
.|+|.-.++-+-.....+.++++=.|.|...+.+.-+|++||+.. +|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~ 61 (92)
T PRK14426 9 WVYGRVQGVGFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEE-QVEKLMEW 61 (92)
T ss_pred EEEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHH-HHHHHHHH
Confidence 456666666677788888899999999999877778999999953 35555543
No 30
>PRK14422 acylphosphatase; Provisional
Probab=90.65 E-value=2.3 Score=27.58 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=41.4
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
-.|+|.-.++-+-.+.+.+..+++=+|.|...+.+.-+|.+||+... |.+|+..
T Consensus 10 ~~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~ 63 (93)
T PRK14422 10 AWVHGHVQGVGFRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAA-CEKLLQL 63 (93)
T ss_pred EEEEEeeCCcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHH-HHHHHHH
Confidence 34567666677788888999999999999998777789999998643 4444443
No 31
>PRK14432 acylphosphatase; Provisional
Probab=90.52 E-value=2.2 Score=27.72 Aligned_cols=53 Identities=8% Similarity=0.051 Sum_probs=40.2
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEc-CchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQ-GDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQ-GD~~~~v~~~L~~ 81 (95)
+|+|.-.++-+-..++.+.+.++=.|.|...+.+.-+|.+| ||. +.|.+|+..
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~-~~v~~f~~~ 60 (93)
T PRK14432 7 FISGKVQGVGFRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTK-EQMKKFEKL 60 (93)
T ss_pred EEEEeecCeeehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCH-HHHHHHHHH
Confidence 46666666667777888888899999999987777899998 985 455555543
No 32
>PRK14442 acylphosphatase; Provisional
Probab=90.43 E-value=2.1 Score=27.64 Aligned_cols=53 Identities=11% Similarity=0.067 Sum_probs=41.1
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
.|+|.-.++-+-..+..+.+.++=.|.|...+.+.-+|.+||+.. .|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~-~i~~f~~~ 61 (91)
T PRK14442 9 YVGGRVQGVGFRQATREEADRLELDGWVRNLDDGRVEVVWEGEED-RAKALERW 61 (91)
T ss_pred EEEEecCCccccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHH-HHHHHHHH
Confidence 457776666777888888899999999999877778999999865 35554443
No 33
>PRK14433 acylphosphatase; Provisional
Probab=90.36 E-value=1.8 Score=27.69 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=41.2
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
+|+|.-.++-+-..+..+..+++=+|.|...+.+.-+|.+|||-. .|.+|+..
T Consensus 6 ~v~G~VQGVGFR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~ 58 (87)
T PRK14433 6 LVSGRVQGVGYRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKE-ALERLLHW 58 (87)
T ss_pred EEEEeeeCcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHH-HHHHHHHH
Confidence 456655566677788888899999999999877668999999964 56666654
No 34
>PRK14449 acylphosphatase; Provisional
Probab=90.17 E-value=2.5 Score=27.14 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=41.9
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
-+|+|.-.++-+-.....+...++=.|.|...+.+.-+|.+||+. +.|.+|+..
T Consensus 7 i~v~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~ 60 (90)
T PRK14449 7 LRITGHVQGVGLRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDE-ENIKELINF 60 (90)
T ss_pred EEEEEeecCcChHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCH-HHHHHHHHH
Confidence 345676566777888888889999999999887777899999986 336666654
No 35
>PRK14428 acylphosphatase; Provisional
Probab=90.12 E-value=2.4 Score=27.88 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=42.2
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
-.|+|.-.++-+--.+..+.++++=.|.|...+.+.-+|++||+. +.|.+|+..
T Consensus 12 i~v~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~-~~i~~fi~~ 65 (97)
T PRK14428 12 IVVTGLVQGVGFRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSS-DAVQALVEQ 65 (97)
T ss_pred EEEEEecCCccchHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCH-HHHHHHHHH
Confidence 356777666777888889999999999999987777899999985 445555544
No 36
>PRK14435 acylphosphatase; Provisional
Probab=90.04 E-value=2.1 Score=27.53 Aligned_cols=53 Identities=17% Similarity=0.391 Sum_probs=40.1
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
.|+|.-.++-+-.....+..+++=.|.|...+.+.-+|.+||+- ++|.+|+..
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~i~~f~~~ 59 (90)
T PRK14435 7 RVEGIVQGVGFRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDE-NALRRFLNE 59 (90)
T ss_pred EEEEEeCCcCChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECH-HHHHHHHHH
Confidence 45666666667777888888899999999987777899999986 335555543
No 37
>PRK14438 acylphosphatase; Provisional
Probab=90.03 E-value=2.2 Score=27.52 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=41.4
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
-.|+|.-.++-+-..+..+..+++=.|.|...+.+.-+|.+||+- ++|.+|+..
T Consensus 7 i~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 60 (91)
T PRK14438 7 VTVKGLVQGVAFRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEE-TDVAALIDW 60 (91)
T ss_pred EEEEEecCCcCccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECH-HHHHHHHHH
Confidence 356776666667788888999999999999987776799999985 345555544
No 38
>PRK14437 acylphosphatase; Provisional
Probab=89.99 E-value=2 Score=28.83 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=42.5
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchh--HHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQR--ENICQWLT 80 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~--~~v~~~L~ 80 (95)
-.|+|.-.++-+-.....+.++++=.|.|...+.+.-+|.+||+.. +...++|.
T Consensus 27 i~V~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~ie~f~~~L~ 82 (109)
T PRK14437 27 ATVSGKVQGVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLW 82 (109)
T ss_pred EEEEEecCCcCchHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 3467877777788889999999999999999877778999999865 34444444
No 39
>PRK14429 acylphosphatase; Provisional
Probab=89.95 E-value=2.3 Score=27.30 Aligned_cols=55 Identities=15% Similarity=0.285 Sum_probs=40.8
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchh--HHHHHHHHHcC
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQR--ENICQWLTKTG 83 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~--~~v~~~L~~~G 83 (95)
.|.|.-.++-+-.....+...++=+|.|...+.+.-+|.+||+-. +...++|. .|
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~-~g 63 (90)
T PRK14429 7 KLTGKVQGVGCRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCE-VG 63 (90)
T ss_pred EEEEeecCeeeHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHh-hC
Confidence 456665566677788888899999999998877778999999864 44444444 35
No 40
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=89.82 E-value=0.54 Score=32.39 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=43.8
Q ss_pred eeCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhH-HHHHHHHH
Q psy4461 20 RNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRE-NICQWLTK 81 (95)
Q Consensus 20 R~grK~vT~I~Gl~~-----~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~-~v~~~L~~ 81 (95)
+-|+ .-|+|.||.+ .=+++.+++.|.+.+|+.|++.+. ....|+|.|.. +|.++|.+
T Consensus 26 ~eG~-~KTvi~Nf~dI~~~L~R~p~~~~ky~~~ELgt~~~id~~----~~lii~G~~~~~~i~~~L~~ 88 (125)
T PF01873_consen 26 IEGK-KKTVIVNFVDICKALNRDPEHVLKYFGKELGTQGSIDGK----GRLIINGRFSSKQIQDLLDK 88 (125)
T ss_dssp EETS-TEEEETTHHHHHHHHTSSHHHHHHHHHHHSSSEEEEETT----TEEEEESSSSCCHHHHHHHH
T ss_pred EEcc-ceeeeecHHHHHHHHCCCHHHHHHHHHHHHCCceEECCC----CEEEEEEecCHHHHHHHHHH
Confidence 4454 5688889876 346999999999999999999873 48999999766 44445544
No 41
>PRK14421 acylphosphatase; Provisional
Probab=89.80 E-value=2.4 Score=27.97 Aligned_cols=52 Identities=12% Similarity=0.168 Sum_probs=39.7
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLT 80 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~ 80 (95)
+|+|.-.++-+-..+..+.++++=.|.|...+.+.-+|.+||+-.. |.+|+.
T Consensus 9 ~v~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~-i~~f~~ 60 (99)
T PRK14421 9 TIRGRVQGVGYRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADA-VAEMIA 60 (99)
T ss_pred EEEEeEcCccchHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHH-HHHHHH
Confidence 4566666666778888888999999999988777789999998643 444443
No 42
>PRK14427 acylphosphatase; Provisional
Probab=89.52 E-value=2.4 Score=27.53 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=41.4
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
-.|.|.-.++-+-.+.+.+.+.++=.|.|...+.+.-+|.+||+.. .|.+|+..
T Consensus 10 i~v~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~i~~f~~~ 63 (94)
T PRK14427 10 ARVFGVVQGVGFRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGE-QVEKLLDW 63 (94)
T ss_pred EEEEEEeCCcCChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHH
Confidence 3456766666677888888999999999998877778999999874 35555544
No 43
>PRK14445 acylphosphatase; Provisional
Probab=89.42 E-value=2.3 Score=27.38 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=40.2
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
+|+|.-.++-+-..+..+.+.++=.|.|...+.+.-+|.+||+-.. |.+|+..
T Consensus 9 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-l~~f~~~ 61 (91)
T PRK14445 9 IVSGLVQGVGFRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGM-IDELIKQ 61 (91)
T ss_pred EEEEEEcCcCChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHH-HHHHHHH
Confidence 4567666666777888888999999999988777689999998633 5554443
No 44
>PRK14430 acylphosphatase; Provisional
Probab=89.09 E-value=3 Score=27.00 Aligned_cols=52 Identities=13% Similarity=0.248 Sum_probs=39.1
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchh--HHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQR--ENICQWL 79 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~--~~v~~~L 79 (95)
+|.|.-.++-+-..+..+..+++=.|.|...+.+.-+|.+||+-. +.+.++|
T Consensus 9 ~v~G~VQGVGFR~~~~~~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l 62 (92)
T PRK14430 9 VAHGRVQGVGYRAACADAADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWM 62 (92)
T ss_pred EEEEeecceeeHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHH
Confidence 456655555667778888888999999998877778999999843 4555555
No 45
>PRK14423 acylphosphatase; Provisional
Probab=88.72 E-value=3.1 Score=26.83 Aligned_cols=53 Identities=13% Similarity=0.106 Sum_probs=40.8
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
+|+|.-.++-+-..++.+.++++=.|.|...+.+.-+|.+||+.. .|.+|+..
T Consensus 10 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~ 62 (92)
T PRK14423 10 FVSGRVQGVYYRASTRDTARELGVDGWVRNLDDGRVEAVFEGPRD-AVEAMVEW 62 (92)
T ss_pred EEEEecCCeeehHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHH
Confidence 456766666778888899999999999998876667999999864 45555544
No 46
>PRK14436 acylphosphatase; Provisional
Probab=88.55 E-value=3.8 Score=26.44 Aligned_cols=53 Identities=17% Similarity=0.222 Sum_probs=40.8
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
.|+|.-.++-+-..+..+..+++=.|.|...+.+.-+|.+||+- ++|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 61 (91)
T PRK14436 9 RIYGRVQGVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDE-ERVEALIGW 61 (91)
T ss_pred EEEEeeCCcCcHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHH
Confidence 45666666667788888889999999999887777899999986 336666554
No 47
>PRK14440 acylphosphatase; Provisional
Probab=88.31 E-value=3.6 Score=26.48 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=39.1
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
+|+|.-.++-+-.....+.++++=.|.|...+.+.-+|.+||+- +.|.+|+..
T Consensus 8 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~ 60 (90)
T PRK14440 8 RVYGLVQGVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYE-EALSKLLER 60 (90)
T ss_pred EEEEeEeccCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCH-HHHHHHHHH
Confidence 45565555556677788888888999999877667899999986 556555544
No 48
>PRK14447 acylphosphatase; Provisional
Probab=88.09 E-value=3.7 Score=26.66 Aligned_cols=53 Identities=11% Similarity=0.143 Sum_probs=40.9
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCC-ceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEY-GEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~-~~~I~vQGD~~~~v~~~L~~ 81 (95)
.|+|.-.++-+-.+++.+.++++=.|.|...+.+ .-+|.+||+ .+.|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~-~~~l~~f~~~ 62 (95)
T PRK14447 9 FIRGKVQGVFFRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGP-RDAVLKVIEW 62 (95)
T ss_pred EEEEecCCccchHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeC-HHHHHHHHHH
Confidence 4577776777788889999999999999988766 479999998 4555555543
No 49
>PRK14452 acylphosphatase; Provisional
Probab=87.71 E-value=4.9 Score=26.89 Aligned_cols=52 Identities=10% Similarity=0.075 Sum_probs=41.8
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L 79 (95)
-.|+|.-.++-+-..+..+.++++=+|.|...+.+.-+|.+||+.. .|.+|+
T Consensus 24 i~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~-~ve~F~ 75 (107)
T PRK14452 24 FLIEGRVQGVGFRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPL-ALSELR 75 (107)
T ss_pred EEEEEeecCcChhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHH-HHHHHH
Confidence 4567877777788888899999999999999877778999999964 566653
No 50
>PRK14441 acylphosphatase; Provisional
Probab=87.61 E-value=4.1 Score=26.32 Aligned_cols=53 Identities=11% Similarity=0.181 Sum_probs=40.0
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLT 80 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~ 80 (95)
-.|+|.-.++-+-..+..+.++++=.|.|...+.+.-+|.+||+-. .|.+|+.
T Consensus 9 i~v~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~-~i~~f~~ 61 (93)
T PRK14441 9 IVVSGRVQGVAFRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERA-AVGALVR 61 (93)
T ss_pred EEEEEecCCccchHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHH-HHHHHHH
Confidence 3456766666677788888899999999998877778999999843 4444443
No 51
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=87.47 E-value=4.4 Score=25.60 Aligned_cols=53 Identities=15% Similarity=0.317 Sum_probs=39.3
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
+|+|.-.++-+-..++.+...++=.|.|...+.+.-+|.+||+- +.|.+|+..
T Consensus 9 ~v~G~VQGVgFR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~-~~l~~f~~~ 61 (91)
T PF00708_consen 9 IVSGRVQGVGFRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEE-EQLEEFIKW 61 (91)
T ss_dssp EEEEETSSSSHHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEH-HHHHHHHHH
T ss_pred EEEEEECcCChhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCH-HHHHHHHHH
Confidence 56776667778888999999999999999987777899999974 335555443
No 52
>PRK14431 acylphosphatase; Provisional
Probab=87.07 E-value=4.6 Score=25.99 Aligned_cols=55 Identities=20% Similarity=0.203 Sum_probs=40.2
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCch--hHHHHHHHHHcCC
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ--RENICQWLTKTGL 84 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~--~~~v~~~L~~~G~ 84 (95)
.|.|.-.++-+-..++.+.++++=.|.|...+. +-+|++||+. .++..++|.+ |-
T Consensus 7 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~d-gVei~~qG~~~~l~~f~~~l~~-g~ 63 (89)
T PRK14431 7 QVFGRVQGVGFRYFTQRIAMNYNIVGTVQNVDD-YVEIYAQGDDADLERFIQGVIE-GA 63 (89)
T ss_pred EEEEecCCeeEhHHHHHHHhhcCCEEEEEECCC-cEEEEEEcCHHHHHHHHHHHhc-CC
Confidence 456766666667778888899999999998866 5999999975 4444445544 44
No 53
>PRK14448 acylphosphatase; Provisional
Probab=86.74 E-value=5.6 Score=25.55 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=40.8
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
-.|+|.-.++-+-...+.+...++=.|.|...+.+.-+|.+||+-. +|.+|+..
T Consensus 6 ~~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~v~~f~~~ 59 (90)
T PRK14448 6 FIVYGHVQGVGFRYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSDA-QIAAFRDW 59 (90)
T ss_pred EEEEEeecCcchHHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCHH-HHHHHHHH
Confidence 3566766666777888888889999999999877778999999863 35444443
No 54
>PRK14424 acylphosphatase; Provisional
Probab=86.06 E-value=6.1 Score=25.74 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=40.5
Q ss_pred EEEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHH
Q psy4461 26 LTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLT 80 (95)
Q Consensus 26 vT~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~ 80 (95)
--+|+|--.++-+-.....+..+++=.|.|...+.+.-+|.+||+-.. |.+|+.
T Consensus 10 ~~~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-v~~f~~ 63 (94)
T PRK14424 10 YVRVRGVVQGVGFRHATVREAHALGLRGWVANLEDGTVEAMIQGPAAQ-IDRMLA 63 (94)
T ss_pred EEEEEEeecCCchHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECHHH-HHHHHH
Confidence 345667666667777888888899999999987766689999998643 444443
No 55
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=74.61 E-value=21 Score=23.28 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=43.2
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
-+|.|--.++.+-..++.....++=.|.|...+.+.-+|..||+--+ +.+|+..
T Consensus 8 ~~V~GrVQGVGFR~~~~~~A~~lgl~G~V~N~~DGsVeiva~G~~~~-v~~~~~~ 61 (92)
T COG1254 8 ARVYGRVQGVGFRYFTRSEALRLGLTGWVKNLDDGSVEIVAEGPDEA-VEKFIEW 61 (92)
T ss_pred EEEEEEeccccHHHHHHHHHHHCCCEEEEEECCCCeEEEEEEcCHHH-HHHHHHH
Confidence 35667666777888888899999999999998877789999999766 5555543
No 56
>PF00691 OmpA: OmpA family; InterPro: IPR006665 This entry represents domain with a beta/alpha/beta/alpha-beta(2) structure found in the C-terminal region of many Gram-negative bacterial outer membrane proteins [], such as porin-like integral membrane proteins (such as ompA) [], small lipid-anchored proteins (such as pal) [], and MotB proton channels []. The N-terminal half is variable although some of the proteins in this group have the OmpA-like transmembrane domain IPR000498 from INTERPRO at the N terminus. OmpA from Escherichia coli is required for pathogenesis, and can interact with host receptor molecules []. MotB (and MotA) serves two functions in E. coli, the MotA(4)-MotB(2) complex attaches to the cell wall via MotB to form the stator of the flagellar motor, and the MotA-MotB complex couples the flow of ions across the cell membrane to movement of the rotor [].; GO: 0009279 cell outer membrane; PDB: 1OAP_A 2W8B_G 2HQS_C 4ERH_A 2ZF8_A 2ZOV_A 2ZVZ_B 2ZVY_A 3TD4_B 3TD5_D ....
Probab=69.75 E-value=3.2 Score=25.73 Aligned_cols=22 Identities=36% Similarity=0.726 Sum_probs=18.1
Q ss_pred hHHHHHHHHHcCCCCCCcEEEcC
Q psy4461 72 RENICQWLTKTGLAKPEQLKVHG 94 (95)
Q Consensus 72 ~~~v~~~L~~~G~~p~~~I~vhg 94 (95)
...|+++|...|+ |.+.|.+.|
T Consensus 56 A~~V~~~L~~~gi-~~~ri~~~~ 77 (97)
T PF00691_consen 56 AEAVKQYLVENGI-PPERISVVG 77 (97)
T ss_dssp HHHHHHHHHHTTS-SGGGEEEEE
T ss_pred HHHHHHHHHHcCC-ChHhEEEEE
Confidence 4578999999999 788887765
No 57
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=62.10 E-value=7.6 Score=26.41 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=21.9
Q ss_pred EEEEcCchhH-HHHHHHHHcCCCCCCcEEE
Q psy4461 64 VLQLQGDQRE-NICQWLTKTGLAKPEQLKV 92 (95)
Q Consensus 64 ~I~vQGD~~~-~v~~~L~~~G~~p~~~I~v 92 (95)
-|=||=|..+ -|++.|.+.|+ |++.|.+
T Consensus 67 KIWIq~d~TE~gIa~eLve~GV-pk~dIVL 95 (111)
T PF08869_consen 67 KIWIQRDGTEDGIAEELVEAGV-PKEDIVL 95 (111)
T ss_dssp EEEEEEESSSSHHHHHHHHTT---GGGEEE
T ss_pred eEEEEcCchhhHHHHHHHHcCC-CHHHEEE
Confidence 6777888766 78999999999 9998876
No 58
>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.
Probab=60.33 E-value=5.7 Score=25.24 Aligned_cols=23 Identities=13% Similarity=0.410 Sum_probs=18.6
Q ss_pred hHHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 72 RENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 72 ~~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
...|.++|.+.|+ +++.|.+.||
T Consensus 57 A~~V~~~L~~~gi-~~~ri~~~g~ 79 (104)
T TIGR02802 57 ANAVKDYLQAKGV-SASQIETVSY 79 (104)
T ss_pred HHHHHHHHHHcCC-CHHHeEEEee
Confidence 3568899999999 8888887764
No 59
>COG1601 GCD7 Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis]
Probab=58.44 E-value=17 Score=25.96 Aligned_cols=53 Identities=23% Similarity=0.334 Sum_probs=39.0
Q ss_pred eEEEEecCCC-----cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCch-hHHHHHHHHH
Q psy4461 25 TLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ-RENICQWLTK 81 (95)
Q Consensus 25 ~vT~I~Gl~~-----~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~-~~~v~~~L~~ 81 (95)
..|++.|+-+ .-|++-+++.|++.++.+|++.+. ....+||-. ++.|.+.|..
T Consensus 42 ~~Ti~~Nf~dia~~l~rDp~h~~k~l~kel~t~g~~d~~----~rlvl~g~f~~~~i~~~i~~ 100 (151)
T COG1601 42 NRTIIRNFGDIAEALNRDPEHLVKFLKKELGTAGSIDGK----GRLVLQGKFSDSEIVNEIER 100 (151)
T ss_pred chhHHHhHHHHHHHhcCCHHHHHHHHHHHhccccccCCc----ceEEEEecccHHHHHHHHHH
Confidence 3467777643 567999999999999999999863 477778774 4455555554
No 60
>TIGR02433 lysidine_TilS_C tRNA(Ile)-lysidine synthetase, C-terminal domain. TIGRFAMs model TIGR02432 describes the family of the N-terminal domain of tRNA(Ile)-lysidine synthetase. This family (TIGR02433) describes a small C-terminal domain of about 50 residues present in about half the members of family TIGR02432,and in no other protein. Characterized examples of tRNA(Ile)-lysidine synthetase from E. coli and Bacillus subtilis both contain this domain.
Probab=56.75 E-value=14 Score=20.26 Aligned_cols=25 Identities=12% Similarity=0.332 Sum_probs=20.5
Q ss_pred ceEEEEcCc-hhHHHHHHHHHcCCCC
Q psy4461 62 GEVLQLQGD-QRENICQWLTKTGLAK 86 (95)
Q Consensus 62 ~~~I~vQGD-~~~~v~~~L~~~G~~p 86 (95)
++.+.+.|. +..+|+++|++.++.|
T Consensus 9 gd~~~~~g~~~~k~lkk~~~e~kiP~ 34 (47)
T TIGR02433 9 GDRIKLLGRKGSKKLKKLFIDAKVPP 34 (47)
T ss_pred CCEEEECCCCCCchHHHHHHHcCCCH
Confidence 467888876 6789999999999944
No 61
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.18 E-value=25 Score=20.67 Aligned_cols=21 Identities=14% Similarity=0.242 Sum_probs=19.0
Q ss_pred EEEEcC-chhHHHHHHHHHcCC
Q psy4461 64 VLQLQG-DQRENICQWLTKTGL 84 (95)
Q Consensus 64 ~I~vQG-D~~~~v~~~L~~~G~ 84 (95)
.|++++ +|.+++.+.|.+.||
T Consensus 43 ~ie~~~~~~~~~i~~~L~~~G~ 64 (68)
T cd04885 43 GIQVPDREDLAELKERLEALGY 64 (68)
T ss_pred EEEeCCHHHHHHHHHHHHHcCC
Confidence 578888 799999999999998
No 62
>PF11388 DotA: Phagosome trafficking protein DotA; InterPro: IPR021528 DotA is essential for intracellular growth in Legionella []. DotA is thought to play an important role in regulating initial phagosome trafficking decisions either upon or immediately after macrophage uptake [].
Probab=51.12 E-value=9.1 Score=25.72 Aligned_cols=27 Identities=22% Similarity=0.495 Sum_probs=22.1
Q ss_pred EecCCC-cccHHHHHHHHhhhcccceEEee
Q psy4461 29 VQGLSS-EYDLKKIVRACKKEFACNGTVIE 57 (95)
Q Consensus 29 I~Gl~~-~~dl~~lak~lkk~~acggsv~~ 57 (95)
++||+. .+|++.|.|.|++ -|.++...
T Consensus 4 ~tgle~s~fd~~ql~k~f~~--tc~~~~a~ 31 (105)
T PF11388_consen 4 NTGLEKSNFDPAQLTKPFGK--TCQGDYAL 31 (105)
T ss_pred ccccccccCCHHHhhhhhhc--cccCchHH
Confidence 579998 9999999999999 56665543
No 63
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=50.41 E-value=34 Score=21.99 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=24.9
Q ss_pred HHHhhhcccceEEeecC-CCceEEEEcCc-hhHHHHHHHHHcCCCCCCcEE
Q psy4461 43 RACKKEFACNGTVIEHP-EYGEVLQLQGD-QRENICQWLTKTGLAKPEQLK 91 (95)
Q Consensus 43 k~lkk~~acggsv~~~~-~~~~~I~vQGD-~~~~v~~~L~~~G~~p~~~I~ 91 (95)
..|+-.|-++|||.+.. +...||...-+ ..+.+.++|.+.|+ +...++
T Consensus 3 aflrG~Fl~~Gsi~~P~~~YhLEi~~~~~e~a~~l~~lL~~~~i-~~k~~~ 52 (93)
T PF14527_consen 3 AFLRGAFLACGSISDPKKSYHLEIRFNDEEFAEQLKELLNKFGI-NAKIIK 52 (93)
T ss_dssp HHHHHHHHHHEEE--TTT---EEEEES-HHHHHHHHHHHHHH-----EEEE
T ss_pred HHHHHHHHCCeeccCCCCceEEEEecCCHHHHHHHHHHHHHcCC-Cceeee
Confidence 35667788888888743 23456666654 55567777777788 444443
No 64
>PF06857 ACP: Malonate decarboxylase delta subunit (MdcD); InterPro: IPR023439 This family consists of the acyl carrier protein found in malonate decarboxylase and citrate lyase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=48.97 E-value=58 Score=21.04 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=25.0
Q ss_pred EEeecCCCceEEEEcCc--------hhHHHHHHHHHcCCCCCCcEEEc
Q psy4461 54 TVIEHPEYGEVLQLQGD--------QRENICQWLTKTGLAKPEQLKVH 93 (95)
Q Consensus 54 sv~~~~~~~~~I~vQGD--------~~~~v~~~L~~~G~~p~~~I~vh 93 (95)
++.+.+.++-+|+|++. ++.-|.++|.++|+ +.=.|.++
T Consensus 19 ~v~p~~~~gi~i~l~S~v~~~fg~~i~~vi~~~l~~~~i-~~~~v~i~ 65 (87)
T PF06857_consen 19 TVEPAESGGIEIELESSVVKQFGDQIRAVIRETLEELGI-EDAKVEIN 65 (87)
T ss_pred EEEeCCCCcEEEEEEchHHhhhHHHHHHHHHHHHHhcCC-CceEEEEE
Confidence 34444445678888866 44556668888888 55456654
No 65
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=47.26 E-value=62 Score=23.72 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=30.9
Q ss_pred CCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHH
Q psy4461 32 LSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQW 78 (95)
Q Consensus 32 l~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~ 78 (95)
|....+..+|.+.+++.....=...+..+..-.|++||+.. .|.+.
T Consensus 5 ~~~~~E~~~fle~l~~~~~~~~~~v~~k~n~l~I~i~G~~~-eike~ 50 (190)
T PF09840_consen 5 FRDDEECEEFLERLSKMVKSIYIYVEVKGNSLKIEIQGYEK-EIKEA 50 (190)
T ss_pred cCChHHHHHHHHHHHhhccCcEEEEEEeCCEEEEEEecChH-HHHHH
Confidence 34456788899999888544433344434568999999988 55543
No 66
>COG4465 CodY Pleiotropic transcriptional repressor [Transcription]
Probab=46.64 E-value=37 Score=26.21 Aligned_cols=56 Identities=11% Similarity=0.115 Sum_probs=43.5
Q ss_pred CCCcccHHHHHHHHhhhcccceEEeecCCCc-eEEEEcCchhHHHHHHHHHcCCCCCC
Q psy4461 32 LSSEYDLKKIVRACKKEFACNGTVIEHPEYG-EVLQLQGDQRENICQWLTKTGLAKPE 88 (95)
Q Consensus 32 l~~~~dl~~lak~lkk~~acggsv~~~~~~~-~~I~vQGD~~~~v~~~L~~~G~~p~~ 88 (95)
|...++.+++|..|.....|+.-|....++- ..-+=+...-+++.++|..+-| |++
T Consensus 22 L~~~l~y~~ma~~ladVi~~N~~iis~kGklLGy~~~~~~~~dr~~q~~~~r~f-Pde 78 (261)
T COG4465 22 LQKPLPYNEMAETLADVIECNAFIISRKGKLLGYSFNYKTNNDRVKQMFEDRKF-PDE 78 (261)
T ss_pred ccCcccHHHHHHHHHHHhhcceEEEeCCCceeccccccccchHHHHHHHHHhcC-CHH
Confidence 4446889999999999999999999864331 3445567778999999998878 653
No 67
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=45.30 E-value=20 Score=24.67 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=19.8
Q ss_pred hHHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 72 RENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 72 ~~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
.+.+++.|.+.|+ |++.|.+-|+
T Consensus 145 se~~~~~l~~~Gi-~~~~I~vtGi 167 (169)
T PF06925_consen 145 SEEVKEELIERGI-PPERIHVTGI 167 (169)
T ss_pred CHHHHHHHHHcCC-ChhHEEEeCc
Confidence 4688889999999 9999999884
No 68
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.82 E-value=45 Score=20.57 Aligned_cols=21 Identities=10% Similarity=0.208 Sum_probs=18.6
Q ss_pred EEEEcC--chhHHHHHHHHHcCC
Q psy4461 64 VLQLQG--DQRENICQWLTKTGL 84 (95)
Q Consensus 64 ~I~vQG--D~~~~v~~~L~~~G~ 84 (95)
.|++.+ +|.+++.+.|.+.||
T Consensus 45 ~ie~~~~~~~~~~i~~~L~~~G~ 67 (85)
T cd04906 45 GVSVANGAEELAELLEDLKSAGY 67 (85)
T ss_pred EEEeCCcHHHHHHHHHHHHHCCC
Confidence 467778 899999999999998
No 69
>PF00381 PTS-HPr: PTS HPr component phosphorylation site; InterPro: IPR005698 The histidine-containing phosphocarrier protein (HPr) is a central component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), which transfers metabolic carbohydrates across the cell membrane in many bacterial species [, ]. PTS catalyses the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is as follows: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to Enzyme I (EI) of the PTS, which in turn transfers it to the phosphoryl carrier protein (HPr) [, ]. Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease complex (enzymes EII/EIII). HPr [, ] is a small cytoplasmic protein of 70 to 90 amino acid residues. In some bacteria, HPr is a domain in a larger protein that includes a EIII(Fru) (IIA) domain and in some cases also the EI domain. A conserved histidine in the N-terminal section of HPr serves as an acceptor for the phosphoryl group of EI. In the central part of HPr, there is a conserved serine which (in Gram-positive bacteria only) is phosphorylated by an ATP-dependent protein kinase; a process which probably play a regulatory role in sugar transport. The overall architecture of the HPr domain has been described as an open faced beta-sandwich in which a beta-sheet is packed against three alpha-helices. Regulatory phosphorylation at the conserved Ser residue does not appear to induce large structural changes to the HPr domain, in particular in the region of the active site [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TXE_A 1QR5_A 1RZR_S 2NZU_L 2OEN_L 2NZV_L 1Y51_B 1Y4Y_A 1Y50_A 2HPR_A ....
Probab=43.78 E-value=76 Score=19.46 Aligned_cols=18 Identities=11% Similarity=0.346 Sum_probs=14.3
Q ss_pred EEEEcCchhHHHHHHHHH
Q psy4461 64 VLQLQGDQRENICQWLTK 81 (95)
Q Consensus 64 ~I~vQGD~~~~v~~~L~~ 81 (95)
+|+++|+..++..+.|.+
T Consensus 62 ~i~~~G~de~~a~~~i~~ 79 (84)
T PF00381_consen 62 EIEAEGEDEEEALEAIAE 79 (84)
T ss_dssp EEEEESTTHHHHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHH
Confidence 788899988888777654
No 70
>TIGR03350 type_VI_ompA type VI secretion system OmpA/MotB family protein. The flagellar motor protein MotB and the Gram-negative bacterial outer membrane protein OmpA share a region of sequence homology. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology.
Probab=42.59 E-value=15 Score=24.61 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=18.9
Q ss_pred hHHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 72 RENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 72 ~~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
...|+++|.+.|+ +.+.|.+.||
T Consensus 90 A~aV~~~L~~~Gi-~~~ri~~~g~ 112 (137)
T TIGR03350 90 AKAVADVLAQGGV-PAGRVRAEGR 112 (137)
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEE
Confidence 4678999999999 7788888764
No 71
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=41.60 E-value=26 Score=24.66 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhcccceEEeecC-CCc---eEEEEcCchhHHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 38 LKKIVRACKKEFACNGTVIEHP-EYG---EVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 38 l~~lak~lkk~~acggsv~~~~-~~~---~~I~vQGD~~~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
|+.+|+.|++.=.-.-.|...- ..| ....|-=--.+.|+++|.+.|+++. .|.+-|+
T Consensus 102 L~~~a~~L~~~p~~~i~V~GHTD~~Gs~~yN~~LS~rRA~aV~~~L~~~Gv~~~-~i~~~G~ 162 (190)
T COG2885 102 LDELAKYLKKNPITRILVEGHTDSTGSDEYNQALSERRAEAVADYLVSQGVVAD-RISTVGY 162 (190)
T ss_pred HHHHHHHHHhCCCcEEEEEecCCCCCCHHHhHHHHHHHHHHHHHHHHHcCCCcc-cEEEEEc
Confidence 6677777776543333333211 000 1112211123578899999999444 8988775
No 72
>cd07185 OmpA_C-like Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Probab=41.05 E-value=19 Score=22.28 Aligned_cols=23 Identities=17% Similarity=0.567 Sum_probs=17.5
Q ss_pred hHHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 72 RENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 72 ~~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
...|.++|.+.|+ +.+.|.+.|+
T Consensus 59 A~~v~~~L~~~g~-~~~~i~~~~~ 81 (106)
T cd07185 59 AEAVADYLVSKGV-DASRITAVGY 81 (106)
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEe
Confidence 3468889999998 6668887763
No 73
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=38.84 E-value=18 Score=25.77 Aligned_cols=23 Identities=13% Similarity=0.437 Sum_probs=18.4
Q ss_pred hHHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 72 RENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 72 ~~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
.+.|.++|...|+ +.++|.+.||
T Consensus 126 A~aV~~~L~~~Gv-~~~ri~~~g~ 148 (173)
T PRK10802 126 ANAVKMYLQGKGV-SADQISIVSY 148 (173)
T ss_pred HHHHHHHHHHcCC-CHHHeEEEEe
Confidence 3578899999998 8888887664
No 74
>KOG3360|consensus
Probab=37.96 E-value=1.2e+02 Score=20.23 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=45.1
Q ss_pred CcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCc--hhHHHHHHHHHcCCCCCCcEE
Q psy4461 34 SEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGD--QRENICQWLTKTGLAKPEQLK 91 (95)
Q Consensus 34 ~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD--~~~~v~~~L~~~G~~p~~~I~ 91 (95)
.++.+...+..-.++++=-|=|.....+.-.=++||. ..+..++||...|- |...|+
T Consensus 19 QGv~fr~~t~~~a~~lGlrGWv~Nt~~GtvkG~leGp~~~vd~mk~wl~~~gs-P~s~I~ 77 (98)
T KOG3360|consen 19 QGVCFRKHTLDEAKKLGLRGWVMNTSEGTVKGQLEGPPEKVDEMKEWLLTRGS-PVSAID 77 (98)
T ss_pred ccchhhHHHHHHHHhhcceEEEEecCCceEEEEEeCCHHHHHHHHHHHHhcCC-hhHhee
Confidence 3566777788888889988988887766667788887 67788889999998 777664
No 75
>PRK14980 DNA-directed RNA polymerase subunit G; Provisional
Probab=36.95 E-value=48 Score=23.14 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=23.0
Q ss_pred ccccccCceEEEEEeeCCceEEEEecC
Q psy4461 6 KYLYVCDLLLLSLLRNGRKTLTTVQGL 32 (95)
Q Consensus 6 ~~~~~~~~~iri~~R~grK~vT~I~Gl 32 (95)
+++|.-+-.++.++|-|++.+|+|+=+
T Consensus 69 ~dFCghGyvV~~~k~~~~~y~~iISl~ 95 (127)
T PRK14980 69 DDFCAHGYIVTESSNNGNRYTTIISLF 95 (127)
T ss_pred ceeecCcEEEEEEecCCCeEEEEEEee
Confidence 578888888998899999999999743
No 76
>TIGR00647 MG103 conserved hypothetical protein.
Probab=36.89 E-value=2e+02 Score=22.38 Aligned_cols=42 Identities=14% Similarity=0.299 Sum_probs=30.2
Q ss_pred HHHhhhcccceEEeecCC---CceEEEEcC-chhHHHHHHHHHcCC
Q psy4461 43 RACKKEFACNGTVIEHPE---YGEVLQLQG-DQRENICQWLTKTGL 84 (95)
Q Consensus 43 k~lkk~~acggsv~~~~~---~~~~I~vQG-D~~~~v~~~L~~~G~ 84 (95)
..|+-.|-++|||.+... ...||.... ++.+.+.++|...|+
T Consensus 100 aflrGaFL~~GSv~~P~~s~~YHLEi~~~~~~~a~~l~~ll~~f~~ 145 (279)
T TIGR00647 100 SYMIGAFLSGGSVSDLEHSSNFHLQISSNNEEQIDQLCKLFNEFKL 145 (279)
T ss_pred HHHHHHHhCCeecCCCCCCCceeEEEEeCCHHHHHHHHHHHHHcCc
Confidence 588999999999987652 335666655 355677777776676
No 77
>PRK05177 minC septum formation inhibitor; Reviewed
Probab=36.70 E-value=96 Score=23.21 Aligned_cols=60 Identities=23% Similarity=0.192 Sum_probs=38.6
Q ss_pred eCCceEEEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcC-----chhHHHHHHHHHcCC
Q psy4461 21 NGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQG-----DQRENICQWLTKTGL 84 (95)
Q Consensus 21 ~grK~vT~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQG-----D~~~~v~~~L~~~G~ 84 (95)
+|+...+++=.+ ..|++++.+.|+++++-+.....+ ..-.|.+.+ +....|.++|.++|+
T Consensus 14 Kg~~~~~~~L~~--~~~~~~l~~~L~~kl~~a~~FF~~--apvvld~~~~~~~~~~~~~L~~~l~~~gl 78 (239)
T PRK05177 14 RGRSFLAVVLSP--EAPLDDWLARLDALIARSPGFFLG--RPVVLDLAGLAIERSQLAALLAELEARGI 78 (239)
T ss_pred ECCceEEEEEeC--CCCHHHHHHHHHHHHHhChhhhCC--CeEEEEeCCCCCCHHHHHHHHHHHHHCCC
Confidence 345555555333 568999999999999776544432 123555655 346678888888776
No 78
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=36.51 E-value=63 Score=23.41 Aligned_cols=53 Identities=23% Similarity=0.407 Sum_probs=34.7
Q ss_pred ceEEEEecCCCcccHHHHHHHHhh-hcccceEEeecCCCceEEEEcCchhH---HHHHHHHHc
Q psy4461 24 KTLTTVQGLSSEYDLKKIVRACKK-EFACNGTVIEHPEYGEVLQLQGDQRE---NICQWLTKT 82 (95)
Q Consensus 24 K~vT~I~Gl~~~~dl~~lak~lkk-~~acggsv~~~~~~~~~I~vQGD~~~---~v~~~L~~~ 82 (95)
-.+++..|++.. ..+++.|.+|- ++=.-++|.. ++|-|.|-.|+ .++.+|.+.
T Consensus 92 q~i~lk~GI~~e-~AKkIvK~IKd~klKVqa~IQG-----d~vRVtgKkrDDLQ~viallk~~ 148 (161)
T PRK05412 92 QEVKLKQGIDQE-LAKKIVKLIKDSKLKVQAQIQG-----DQVRVTGKKRDDLQAVIALLRKA 148 (161)
T ss_pred EEEehhhccCHH-HHHHHHHHHHhcCCceeEEecC-----cEEEEecCCHhHHHHHHHHHHhc
Confidence 578888888872 25566665553 2335556654 59999997777 566677764
No 79
>PRK10897 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); Provisional
Probab=35.80 E-value=1.2e+02 Score=19.38 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=24.4
Q ss_pred cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 35 EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 35 ~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
..|.+.+..-|.--..||..| +|.+.|+--++..+.|.+
T Consensus 43 ~~~akSil~lm~Lg~~~G~~i--------~v~~~G~De~~A~~~l~~ 81 (90)
T PRK10897 43 EAEANSVIALLMLDSAKGRQI--------EVEATGPQEEEALAAVIA 81 (90)
T ss_pred EEchHhHHHHHHhCCCCCCEE--------EEEEECcCHHHHHHHHHH
Confidence 345555555555544454444 688889988777776655
No 80
>KOG4616|consensus
Probab=35.53 E-value=8.1 Score=26.76 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=27.6
Q ss_pred CceEEEEEeeCCceEEEEecCCCcccHHHHHHHHh
Q psy4461 12 DLLLLSLLRNGRKTLTTVQGLSSEYDLKKIVRACK 46 (95)
Q Consensus 12 ~~~iri~~R~grK~vT~I~Gl~~~~dl~~lak~lk 46 (95)
...-|++-|+-++.||+.+-+++.+|.++-.|.|+
T Consensus 94 err~rlaarkpkaki~~~e~idd~fd~~eymkf~~ 128 (137)
T KOG4616|consen 94 ERRARLAARKPKAKIKIMEEIDDNFDAKEYMKFIK 128 (137)
T ss_pred HHHHHHhhcCccccceehhhhhcccCHHHHHHHHh
Confidence 33445556778889999998888999999888887
No 81
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=34.38 E-value=91 Score=17.65 Aligned_cols=36 Identities=14% Similarity=0.209 Sum_probs=22.6
Q ss_pred HHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHH
Q psy4461 42 VRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQW 78 (95)
Q Consensus 42 ak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~ 78 (95)
.+.|...++|.-.+.+.......|.|.|+ .+.+...
T Consensus 22 i~~i~~~~g~~I~i~~~~~~~~~v~I~G~-~~~v~~A 57 (62)
T cd02394 22 IRKIMEETGVKIRFPDPGSKSDTITITGP-KENVEKA 57 (62)
T ss_pred HHHHHHHhCCEEEcCCCCCCCCEEEEEcC-HHHHHHH
Confidence 34555566676666553333468999999 5566554
No 82
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=34.27 E-value=25 Score=26.65 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 73 ENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 73 ~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
+.|+++|.+.|+ |++.|.+-||
T Consensus 193 ~aV~~yLv~~GI-~~~RI~~~G~ 214 (239)
T TIGR03789 193 LEVRSYLIKQGV-DEARLTTQAF 214 (239)
T ss_pred HHHHHHHHHcCC-CHHHEEEEEe
Confidence 578899999999 8888887664
No 83
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=34.16 E-value=45 Score=20.34 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=16.3
Q ss_pred HHHHHHHcCCCCCCcEEEcC
Q psy4461 75 ICQWLTKTGLAKPEQLKVHG 94 (95)
Q Consensus 75 v~~~L~~~G~~p~~~I~vhg 94 (95)
|.+.|.++|+.+-+.|.|.+
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~ 64 (69)
T TIGR03595 45 VEDALRKAGAKDGDTVRIGD 64 (69)
T ss_pred HHHHHHHcCCCCCCEEEEcc
Confidence 56678889998888888876
No 84
>PRK04021 hypothetical protein; Reviewed
Probab=32.25 E-value=1.4e+02 Score=19.31 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhcccceEEeecC-CCceEEEEcCchhHHHHHHH
Q psy4461 38 LKKIVRACKKEFACNGTVIEHP-EYGEVLQLQGDQRENICQWL 79 (95)
Q Consensus 38 l~~lak~lkk~~acggsv~~~~-~~~~~I~vQGD~~~~v~~~L 79 (95)
=+++.+.|.+.|++.-++..+. +..+.|.|.|--.+.+.+.|
T Consensus 48 N~ali~~LAk~l~~~I~I~~G~~sr~K~v~i~g~~~e~l~~~L 90 (92)
T PRK04021 48 NKELVKFFSKLLGAEVEIIRGETSREKDLLVKGISLEEVKKKL 90 (92)
T ss_pred HHHHHHHHHHHhCCCEEEEecCCcCceEEEEecCCHHHHHHHh
Confidence 5778888889998876666543 33479999998888887766
No 85
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=31.63 E-value=65 Score=19.03 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=10.9
Q ss_pred HHHHHHHHcCCCCCCcEE
Q psy4461 74 NICQWLTKTGLAKPEQLK 91 (95)
Q Consensus 74 ~v~~~L~~~G~~p~~~I~ 91 (95)
.|.++|...++ |.+.|.
T Consensus 17 tl~~ll~~l~~-~~~~va 33 (65)
T PRK05863 17 TVAALLDSLGF-PEKGIA 33 (65)
T ss_pred cHHHHHHHcCC-CCCcEE
Confidence 47777777777 555443
No 86
>PF09581 Spore_III_AF: Stage III sporulation protein AF (Spore_III_AF); InterPro: IPR014245 This family represents the stage III sporulation protein AF (SpoIIIAF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of these proteins is poorly conserved.
Probab=31.38 E-value=29 Score=24.31 Aligned_cols=23 Identities=43% Similarity=0.741 Sum_probs=19.1
Q ss_pred chhHHHHHHHHH-cCCCCCCcEEEc
Q psy4461 70 DQRENICQWLTK-TGLAKPEQLKVH 93 (95)
Q Consensus 70 D~~~~v~~~L~~-~G~~p~~~I~vh 93 (95)
...++|+++|.+ ||+ |+++|.|+
T Consensus 164 ~~~~~i~~~la~~~~i-~~~~I~V~ 187 (188)
T PF09581_consen 164 EEEEEIKQYLADFYGI-SPEQIKVY 187 (188)
T ss_pred HHHHHHHHHHHHHhCC-CHHHeEEe
Confidence 356689999988 899 99999885
No 87
>PF09776 Mitoc_L55: Mitochondrial ribosomal protein L55; InterPro: IPR018615 Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.
Probab=30.86 E-value=5.9 Score=27.24 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=22.9
Q ss_pred EEEEeeCCceEEEEecCCCcccHHHHHHHHhh
Q psy4461 16 LSLLRNGRKTLTTVQGLSSEYDLKKIVRACKK 47 (95)
Q Consensus 16 ri~~R~grK~vT~I~Gl~~~~dl~~lak~lkk 47 (95)
++.+|..++.++...-+++.+|.++-.+.|+|
T Consensus 85 rl~kR~pk~k~~~~~e~eD~Fd~~~Y~~fwkK 116 (116)
T PF09776_consen 85 RLRKRKPKKKIKIEEELEDDFDAEKYKKFWKK 116 (116)
T ss_pred HHHHhCCccccccchhhcccCCHHHHHHHhhC
Confidence 33445666677777777778888888888875
No 88
>PF15538 Toxin_61: Putative toxin 61
Probab=30.61 E-value=28 Score=25.11 Aligned_cols=39 Identities=18% Similarity=0.432 Sum_probs=31.3
Q ss_pred HHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCCCCCCcE
Q psy4461 44 ACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQL 90 (95)
Q Consensus 44 ~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~~p~~~I 90 (95)
.|-++|+=+|.+.. .|-|.|+ ++.+.+|+.+.|+ ++..+
T Consensus 4 yln~kfgrtg~l~~------dinirgn-~e~a~~F~~s~G~-~~~~~ 42 (157)
T PF15538_consen 4 YLNEKFGRTGDLNH------DINIRGN-REIASDFFKSQGL-TEADM 42 (157)
T ss_pred Hhhhhhcccccccc------ceeeccc-hHHHHHHHHHcCC-CHHHH
Confidence 57788999999885 7999997 5778889999999 55444
No 89
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=30.29 E-value=34 Score=21.78 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=24.8
Q ss_pred HhhhcccceEEeecCCCceEEEEcC-chhHHHHHHHHHcCCCC
Q psy4461 45 CKKEFACNGTVIEHPEYGEVLQLQG-DQRENICQWLTKTGLAK 86 (95)
Q Consensus 45 lkk~~acggsv~~~~~~~~~I~vQG-D~~~~v~~~L~~~G~~p 86 (95)
+-...|++++...+ .....| -..+++.++|.+.|+.|
T Consensus 56 ~~~~sg~n~~~~G~-----ylt~~g~~~~~~d~~~i~~lG~~P 93 (93)
T PF06968_consen 56 LTFMSGANSIMVGG-----YLTTSGNRSVDEDIEMIEKLGLEP 93 (93)
T ss_dssp HHHCCT--EEE-CS-----BTSSSCTSHHHHHHHHHHHTT-ES
T ss_pred HHHhcccceeEECC-----ccccCCCCCHHHHHHHHHHcCCCC
Confidence 44445566666643 688888 78899999999999854
No 90
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=28.16 E-value=1e+02 Score=22.48 Aligned_cols=52 Identities=10% Similarity=0.065 Sum_probs=31.1
Q ss_pred cccHHHHHHHHhhhcccceEEeecCCCc-eEEEEcCchhHHHHHHHHHcCCCCC
Q psy4461 35 EYDLKKIVRACKKEFACNGTVIEHPEYG-EVLQLQGDQRENICQWLTKTGLAKP 87 (95)
Q Consensus 35 ~~dl~~lak~lkk~~acggsv~~~~~~~-~~I~vQGD~~~~v~~~L~~~G~~p~ 87 (95)
.++++++|+.|...+.|+..|....++= ..=...+-.-+.+.+++....| |+
T Consensus 20 ~v~F~~ia~vL~dvl~aNvyIis~kGkiLGy~~~~~~~~~~~~~~~~~~~f-pe 72 (177)
T PF06018_consen 20 PVDFNDIAEVLSDVLEANVYIISRKGKILGYSFIDDFECDRMEEMLEEKRF-PE 72 (177)
T ss_dssp S--HHHHHHHHHHHHTSEEEEEETTSBEEEEE-SS----HHHHHHHHHTB---H
T ss_pred CCCHHHHHHHHHHhhcCcEEEEeCCccEEEEeccCCCCcHHHHHHHhcCcC-CH
Confidence 6899999999999999999999865541 1222233344556666655555 54
No 91
>COG1872 Uncharacterized conserved protein [Function unknown]
Probab=27.88 E-value=73 Score=21.37 Aligned_cols=25 Identities=20% Similarity=0.541 Sum_probs=19.7
Q ss_pred EcCchhHHHHHHHHH-cCCCCCCcEEE
Q psy4461 67 LQGDQRENICQWLTK-TGLAKPEQLKV 92 (95)
Q Consensus 67 vQGD~~~~v~~~L~~-~G~~p~~~I~v 92 (95)
++|---+.|..||.+ .|+ |+++|++
T Consensus 47 ~~GKAN~~li~~Lak~~~v-~kS~V~i 72 (102)
T COG1872 47 VDGKANEELIKFLAKTFGV-PKSSVEI 72 (102)
T ss_pred CCcchhHHHHHHHHHHhCC-CcccEEE
Confidence 457778889999988 688 8888854
No 92
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.86 E-value=89 Score=17.80 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=18.9
Q ss_pred eEEEEcCchhHHHHHHHHHcCC
Q psy4461 63 EVLQLQGDQRENICQWLTKTGL 84 (95)
Q Consensus 63 ~~I~vQGD~~~~v~~~L~~~G~ 84 (95)
-.|.+.++-.+.+.+.|.+.||
T Consensus 45 v~i~v~~~~~~~~~~~L~~~G~ 66 (72)
T cd04883 45 LVFRVQTMNPRPIIEDLRRAGY 66 (72)
T ss_pred EEEEEecCCHHHHHHHHHHCCC
Confidence 4777778888899999999998
No 93
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=27.81 E-value=1.2e+02 Score=16.99 Aligned_cols=37 Identities=8% Similarity=0.168 Sum_probs=26.5
Q ss_pred HHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHH
Q psy4461 41 IVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79 (95)
Q Consensus 41 lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L 79 (95)
..+.+.+.++|.-.+.+.+ ....|.|.| ..+.+.+.+
T Consensus 21 ~i~~I~~~t~~~I~i~~~~-~~~~v~I~G-~~~~v~~A~ 57 (60)
T PF00013_consen 21 NIKEIEEETGVKIQIPDDD-ERDIVTISG-SPEQVEKAK 57 (60)
T ss_dssp HHHHHHHHHTSEEEEESTT-EEEEEEEEE-SHHHHHHHH
T ss_pred cHHHhhhhcCeEEEEcCCC-CcEEEEEEe-CHHHHHHHH
Confidence 3577888889998887653 335999999 666666554
No 94
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=27.56 E-value=1.2e+02 Score=18.69 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=22.1
Q ss_pred cHHHHHHHHhhhcccc-eEEeecCCCce--EEEEcCc
Q psy4461 37 DLKKIVRACKKEFACN-GTVIEHPEYGE--VLQLQGD 70 (95)
Q Consensus 37 dl~~lak~lkk~~acg-gsv~~~~~~~~--~I~vQGD 70 (95)
++++|-..|++.|+.. =+|...|.+++ ++.+.+.
T Consensus 1 Ei~klq~yLr~~f~n~~i~v~~rpk~~dsaEV~~g~E 37 (63)
T PF11324_consen 1 EIKKLQAYLRRTFGNPGITVKARPKKDDSAEVYIGDE 37 (63)
T ss_pred ChHHHHHHHHHHhCCCceEEEcCCCCCCceEEEeCCE
Confidence 3678899999999554 45555555543 5555443
No 95
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.32 E-value=85 Score=17.89 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=17.2
Q ss_pred eEEEEcC-chhHHHHHHHHHcCC
Q psy4461 63 EVLQLQG-DQRENICQWLTKTGL 84 (95)
Q Consensus 63 ~~I~vQG-D~~~~v~~~L~~~G~ 84 (95)
..+.++. ++.+++.+.|.+.||
T Consensus 45 ~~i~v~~~~~~~~~~~~L~~~G~ 67 (69)
T cd04909 45 LRISFKTQEDRERAKEILKEAGY 67 (69)
T ss_pred EEEEECCHHHHHHHHHHHHHcCC
Confidence 3566654 478899999999998
No 96
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.13 E-value=1.6e+02 Score=23.21 Aligned_cols=59 Identities=19% Similarity=0.328 Sum_probs=35.7
Q ss_pred CceEE----EEecCCC-cccHHHHHHHHhhhcccceEEee-cCCCceEEEEcC---chhHHHHHHHHHcCC
Q psy4461 23 RKTLT----TVQGLSS-EYDLKKIVRACKKEFACNGTVIE-HPEYGEVLQLQG---DQRENICQWLTKTGL 84 (95)
Q Consensus 23 rK~vT----~I~Gl~~-~~dl~~lak~lkk~~acggsv~~-~~~~~~~I~vQG---D~~~~v~~~L~~~G~ 84 (95)
++.|| +|.|+.+ .-|+++|++.++.. .|---+.+ ++-++. ..+- +..+.+.++|.+.|+
T Consensus 249 ~~rv~iey~LI~gvNDs~eda~~La~llk~l-~~~VnLiPyn~~~~~--~~~~ps~e~l~~f~~~l~~~gi 316 (342)
T PRK14454 249 NRRITFEYALVKGVNDSKEDAKELGKLLKGM-LCHVNLIPVNEVKEN--GFKKSSKEKIKKFKNILKKNGI 316 (342)
T ss_pred CCEEEEEEEeECCCCCCHHHHHHHHHHHhcC-CceEEEEecCCCCCC--CCCCCCHHHHHHHHHHHHHCCC
Confidence 45677 9999998 67899999999874 34333332 221111 1122 234456667777888
No 97
>COG1918 FeoA Fe2+ transport system protein A [Inorganic ion transport and metabolism]
Probab=26.92 E-value=1.4e+02 Score=18.57 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=22.0
Q ss_pred eEEEEcCchhHHHHHHHHHcCCCCCCcEEE
Q psy4461 63 EVLQLQGDQRENICQWLTKTGLAKPEQLKV 92 (95)
Q Consensus 63 ~~I~vQGD~~~~v~~~L~~~G~~p~~~I~v 92 (95)
..+.+.+.. .+..-|.++||+|-..|.|
T Consensus 13 ~V~~i~~~~--~~~~RL~~mG~~~G~~i~v 40 (75)
T COG1918 13 RVVSIDGGN--GLRRRLLSMGIVPGASITV 40 (75)
T ss_pred EEEEecCCH--HHHHHHHHcCCCCCCEEEE
Confidence 456666666 7888889999999888865
No 98
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=26.91 E-value=47 Score=24.56 Aligned_cols=23 Identities=13% Similarity=0.472 Sum_probs=18.7
Q ss_pred hHHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 72 RENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 72 ~~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
.+.|.++|.+.|+ +.+.|.+.||
T Consensus 169 A~aV~~~L~~~Gi-~~~ri~~~G~ 191 (219)
T PRK10510 169 ADSVASALITQGV-DASRIRTQGM 191 (219)
T ss_pred HHHHHHHHHHcCC-ChhhEEEEEE
Confidence 3578999999999 7888887764
No 99
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.63 E-value=98 Score=17.05 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=15.2
Q ss_pred EEEEcCchhHHHHHHHHHcCC
Q psy4461 64 VLQLQGDQRENICQWLTKTGL 84 (95)
Q Consensus 64 ~I~vQGD~~~~v~~~L~~~G~ 84 (95)
.+.+++ .+.+.+.|.++||
T Consensus 44 ~~~ve~--~~~~~~~L~~~G~ 62 (65)
T cd04882 44 IFRTED--IEKAIEVLQERGV 62 (65)
T ss_pred EEEeCC--HHHHHHHHHHCCc
Confidence 445554 8899999999998
No 100
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=26.17 E-value=1.5e+02 Score=18.19 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=20.9
Q ss_pred EEcCchhHHHHHHHHHcCCCCCCcEEEc
Q psy4461 66 QLQGDQRENICQWLTKTGLAKPEQLKVH 93 (95)
Q Consensus 66 ~vQGD~~~~v~~~L~~~G~~p~~~I~vh 93 (95)
-++.+-...+.+.|.+.|+.|-..|++.
T Consensus 13 ~~~~~~~~~~~~rL~~mGl~pG~~V~v~ 40 (74)
T PRK09555 13 GFSREISPAYRQKLLSLGMLPGSSFNVV 40 (74)
T ss_pred EEccCCChHHHHHHHHcCCCCCCEEEEE
Confidence 3455555667888888999999888763
No 101
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=26.10 E-value=77 Score=16.85 Aligned_cols=16 Identities=25% Similarity=0.781 Sum_probs=12.7
Q ss_pred HHHHHHHHHcCCCCCC
Q psy4461 73 ENICQWLTKTGLAKPE 88 (95)
Q Consensus 73 ~~v~~~L~~~G~~p~~ 88 (95)
+++.++|.+.|++..+
T Consensus 7 ~~L~~wL~~~gi~~~~ 22 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPK 22 (38)
T ss_pred HHHHHHHHHcCCCCCC
Confidence 6789999999985443
No 102
>PTZ00423 glideosome-associated protein 45; Provisional
Probab=25.74 E-value=47 Score=24.23 Aligned_cols=17 Identities=12% Similarity=0.360 Sum_probs=14.7
Q ss_pred HHHHHHHHhhhcccceE
Q psy4461 38 LKKIVRACKKEFACNGT 54 (95)
Q Consensus 38 l~~lak~lkk~~acggs 54 (95)
+.+.|+.|.++|+|+-.
T Consensus 154 ~DEtAk~~s~RCGcdLg 170 (193)
T PTZ00423 154 LDETAKVFSRRCGCDLG 170 (193)
T ss_pred HHHHHHHHHHhhCCCCC
Confidence 78899999999999753
No 103
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=25.46 E-value=90 Score=17.91 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=19.4
Q ss_pred eEEEEcCchhHHHHHHHHHcCC
Q psy4461 63 EVLQLQGDQRENICQWLTKTGL 84 (95)
Q Consensus 63 ~~I~vQGD~~~~v~~~L~~~G~ 84 (95)
..+.++.|..+.+.+.|.+.||
T Consensus 41 ~~~rl~~~~~~~~~~~L~~~G~ 62 (66)
T cd04908 41 GILRLIVSDPDKAKEALKEAGF 62 (66)
T ss_pred CEEEEEECCHHHHHHHHHHCCC
Confidence 5777788998899999999998
No 104
>COG1647 Esterase/lipase [General function prediction only]
Probab=25.24 E-value=1.8e+02 Score=22.42 Aligned_cols=71 Identities=18% Similarity=0.281 Sum_probs=46.1
Q ss_pred eeCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCc--eEEEEcC---chhHHHHH---HHHHcCCCCCCcE
Q psy4461 20 RNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYG--EVLQLQG---DQRENICQ---WLTKTGLAKPEQL 90 (95)
Q Consensus 20 R~grK~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~--~~I~vQG---D~~~~v~~---~L~~~G~~p~~~I 90 (95)
..|++-|-.+-||.. .-|.+.|+++|... +=.++.-.-|+-| -+..++- |+-+++.+ .|.+.|+ +.|
T Consensus 12 ~~G~~AVLllHGFTGt~~Dvr~Lgr~L~e~-GyTv~aP~ypGHG~~~e~fl~t~~~DW~~~v~d~Y~~L~~~gy---~eI 87 (243)
T COG1647 12 EGGNRAVLLLHGFTGTPRDVRMLGRYLNEN-GYTVYAPRYPGHGTLPEDFLKTTPRDWWEDVEDGYRDLKEAGY---DEI 87 (243)
T ss_pred ccCCEEEEEEeccCCCcHHHHHHHHHHHHC-CceEecCCCCCCCCCHHHHhcCCHHHHHHHHHHHHHHHHHcCC---CeE
Confidence 457899999999998 88999999999988 4444433334332 2333333 34445544 5666777 356
Q ss_pred EEcC
Q psy4461 91 KVHG 94 (95)
Q Consensus 91 ~vhg 94 (95)
.|-|
T Consensus 88 ~v~G 91 (243)
T COG1647 88 AVVG 91 (243)
T ss_pred EEEe
Confidence 6665
No 105
>PF05798 Phage_FRD3: Bacteriophage FRD3 protein; InterPro: IPR008765 This is a group of proteins of unknown function from bacteriophage T2 and related phage.
Probab=25.22 E-value=1.3e+02 Score=19.02 Aligned_cols=49 Identities=6% Similarity=0.221 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhccc--ceEEeecCCCceEEEEcCchhHHHHHHHHHc---CCCCC
Q psy4461 38 LKKIVRACKKEFAC--NGTVIEHPEYGEVLQLQGDQRENICQWLTKT---GLAKP 87 (95)
Q Consensus 38 l~~lak~lkk~~ac--ggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~---G~~p~ 87 (95)
++-.-..++.+.-- =.++.+.+-...+|.|||+. +.+..|+.++ |.-|+
T Consensus 11 fEY~eEvIRNRyPelsi~si~d~~f~~~~i~i~GPl-e~l~~FM~nEYCdGM~~E 64 (75)
T PF05798_consen 11 FEYTEEVIRNRYPELSITSIQDSKFCSIQIVIEGPL-EDLTRFMANEYCDGMDPE 64 (75)
T ss_pred hHhHHHHHHccCCceEEEEeecCCcceEEEEEeccH-HHHHHHHHHHhccCCCHH
Confidence 33334444444432 23455555455799999986 5677777763 76444
No 106
>PF11734 TilS_C: TilS substrate C-terminal domain; InterPro: IPR012796 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of lysidine-tRNA(Ile) synthetase, which ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a PP-loop motif involved in ATP binding. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) versus AUG (Met) and UGA (stop) versus UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, E. coli NtrL, and B. subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain. The HUP domain class (after HIGH-signature proteins, UspA, and PP-ATPase) groups together PP-loop ATPases, the nucleotide-binding domains of class I aminoacyl-tRNA synthetases, UspA protein (USPA domains), photolyases, and electron transport flavoproteins (ETFP). The HUP domain is a distinct class of alpha/beta domain[]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3A2K_A 3HJ7_A 1NI5_A.
Probab=24.66 E-value=50 Score=20.01 Aligned_cols=25 Identities=8% Similarity=0.264 Sum_probs=19.1
Q ss_pred CceEEEEcCc-hhHHHHHHHHHcCCC
Q psy4461 61 YGEVLQLQGD-QRENICQWLTKTGLA 85 (95)
Q Consensus 61 ~~~~I~vQGD-~~~~v~~~L~~~G~~ 85 (95)
.|+.|.+.|. ++.+|+++|.+.+++
T Consensus 8 ~gdri~~~g~~~~k~lKk~~~e~kIP 33 (74)
T PF11734_consen 8 PGDRIRPAGRGGSKKLKKLFQEAKIP 33 (74)
T ss_dssp TTSEEEBTTSSSEEEHHHHHHHCT--
T ss_pred CCCEEEECCCCCCchHHHHHHHcCCC
Confidence 3578888766 589999999999994
No 107
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=24.55 E-value=70 Score=19.10 Aligned_cols=22 Identities=32% Similarity=0.598 Sum_probs=18.2
Q ss_pred eEEEEcCch--hHHHHHHHHHcCC
Q psy4461 63 EVLQLQGDQ--RENICQWLTKTGL 84 (95)
Q Consensus 63 ~~I~vQGD~--~~~v~~~L~~~G~ 84 (95)
..+++.||. .+++.++|.+.|+
T Consensus 48 l~l~l~g~~~~~~~a~~~L~~~~v 71 (76)
T PF09383_consen 48 LILELPGDDEEIEKAIAYLREQGV 71 (76)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTTE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCC
Confidence 689999995 5699999999887
No 108
>PF00543 P-II: Nitrogen regulatory protein P-II members of this family.; InterPro: IPR002187 In Gram-negative bacteria, the activity and concentration of glutamine synthetase (GS) is regulated in response to nitrogen source availability. PII, a tetrameric protein encoded by the glnB gene, is a component of the adenylation cascade involved in the regulation of GS activity []. In nitrogen-limiting conditions, when the ratio of glutamine to 2-ketoglutarate decreases, P-II is uridylylated on a tyrosine residue to form P-II-UMP. P-II-UMP allows the deadenylation of GS, thus activating the enzyme. Conversely, in nitrogen excess, P-II-UMP is deuridylated and then promotes the adenylation of GS. P-II also indirectly controls the transcription of the GS gene (glnA) by preventing NR-II (ntrB) to phosphorylate NR-I (ntrC) which is the transcriptional activator of glnA. Once P-II is uridylylated, these events are reversed. P-II is a protein of about 110 amino acid residues extremely well conserved. The tyrosine which is uridylated is located in the central part of the protein. In cyanobacteria, P-II seems to be phosphorylated on a serine residue rather than being uridylated. In methanogenic archaebacteria, the nitrogenase iron protein gene (nifH) is followed by two open reading frames highly similar to the eubacterial P-II protein []. These proteins could be involved in the regulation of nitrogen fixation. In the red alga, Porphyra purpurea, there is a glnB homologue encoded in the chloroplast genome. Other proteins highly similar to glnB are: Bacillus subtilis protein nrgB []. Escherichia coli hypothetical protein ybaI []. ; GO: 0030234 enzyme regulator activity, 0006808 regulation of nitrogen utilization; PDB: 1V3S_B 1V3R_C 2XZW_A 2XUL_A 2V5H_J 2XG8_C 2JJ4_F 1QY7_C 4AFF_A 2XBP_A ....
Probab=24.49 E-value=63 Score=20.58 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=13.2
Q ss_pred EEEcCchhHHHHHHHHHcCC
Q psy4461 65 LQLQGDQRENICQWLTKTGL 84 (95)
Q Consensus 65 I~vQGD~~~~v~~~L~~~G~ 84 (95)
+.|+-+..+.+.+.|.+.|+
T Consensus 3 aIir~~~~~~v~~aL~~~G~ 22 (102)
T PF00543_consen 3 AIIRPEKLEEVIEALREAGV 22 (102)
T ss_dssp EEEEGGGHHHHHHHHHHTTG
T ss_pred EEEChhHHHHHHHHHHHCCC
Confidence 45666666777777777665
No 109
>COG2859 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.43 E-value=38 Score=25.97 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=23.2
Q ss_pred ceEEEEcCch-----------hHHHHHHHHHcCCCCCCcEEE
Q psy4461 62 GEVLQLQGDQ-----------RENICQWLTKTGLAKPEQLKV 92 (95)
Q Consensus 62 ~~~I~vQGD~-----------~~~v~~~L~~~G~~p~~~I~v 92 (95)
+-.+.+||+. .++|..||.+.|+ |++.|..
T Consensus 58 ~i~~s~~~n~~~~l~~~l~~~~~kI~afl~~~gi-~e~~Ism 98 (237)
T COG2859 58 GISFSSQGNTLQALYQDLEQQTEKIQAFLQAQGI-PEAEISM 98 (237)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHHHcCC-CHHHhhc
Confidence 4577788875 4678889999999 8887754
No 110
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=23.53 E-value=66 Score=19.56 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=12.2
Q ss_pred HHHHHHHcCCCCCCcEEEcC
Q psy4461 75 ICQWLTKTGLAKPEQLKVHG 94 (95)
Q Consensus 75 v~~~L~~~G~~p~~~I~vhg 94 (95)
|.+.|.+.|+.+-+.|.|.+
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~ 64 (69)
T PF09269_consen 45 VEKALRKAGAKEGDTVRIGD 64 (69)
T ss_dssp HHHHHHTTT--TT-EEEETT
T ss_pred HHHHHHHcCCCCCCEEEEcC
Confidence 55677778887777777765
No 111
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=23.07 E-value=87 Score=17.11 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=12.8
Q ss_pred hHHHHHHHHHcCCCCCCcEEEcC
Q psy4461 72 RENICQWLTKTGLAKPEQLKVHG 94 (95)
Q Consensus 72 ~~~v~~~L~~~G~~p~~~I~vhg 94 (95)
++.+.+|+... - |+.-|-|||
T Consensus 20 ~~~L~~~i~~~-~-p~~vilVHG 40 (43)
T PF07521_consen 20 REELLEFIEQL-N-PRKVILVHG 40 (43)
T ss_dssp HHHHHHHHHHH-C-SSEEEEESS
T ss_pred HHHHHHHHHhc-C-CCEEEEecC
Confidence 45666666665 2 555667776
No 112
>PRK13992 minC septum formation inhibitor; Provisional
Probab=22.90 E-value=3.1e+02 Score=20.00 Aligned_cols=52 Identities=13% Similarity=0.196 Sum_probs=35.1
Q ss_pred CCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcC-----chhHHHHHHHHHcCC
Q psy4461 32 LSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQG-----DQRENICQWLTKTGL 84 (95)
Q Consensus 32 l~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQG-----D~~~~v~~~L~~~G~ 84 (95)
|+...|++++.+.|+.++.-+...... +..-.+.+++ ...+++.+.|.+.|+
T Consensus 15 l~~~~d~~~l~~~L~~kl~~~~~FF~~-~a~v~l~~~~~~~~~~~~~~l~~~l~~~~l 71 (205)
T PRK13992 15 IKDYQNLEDVLNEIDAKITQMGGFFAK-GDKISLMIENHEKHIQDIPKIVSKLRNLGL 71 (205)
T ss_pred ECCCCCHHHHHHHHHHHHHhChHhhcC-CCeEEEEecCCCCCHHHHHHHHHHHHHCCC
Confidence 556678999999999999877655521 0113556665 245677788877775
No 113
>KOG1143|consensus
Probab=22.69 E-value=2.4e+02 Score=23.94 Aligned_cols=59 Identities=15% Similarity=0.357 Sum_probs=40.0
Q ss_pred EEecCCC-ccc-HHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCCCCCC--cEEE
Q psy4461 28 TVQGLSS-EYD-LKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPE--QLKV 92 (95)
Q Consensus 28 ~I~Gl~~-~~d-l~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~~p~~--~I~v 92 (95)
+..||.+ ..+ --.-.+.+..+++.|-+|-.. ++|.+.||-+..|.+.|..+ + |.+ +|++
T Consensus 106 ~l~GL~deemnaSL~TL~~MA~~lGAs~~vLre----k~v~~~~~~~R~v~EVLVRK-v-Pd~Qqfiev 168 (591)
T KOG1143|consen 106 ILSGLTDEEMNASLRTLRTMAQALGASMVVLRE----KDVTVKGSSRRTVVEVLVRK-V-PDSQQFIEV 168 (591)
T ss_pred eeeccCHHHHHHHHHHHHHHHHHhCCceEEEEe----eeeeccCCCcchhhhhhhhh-C-CCcccceEE
Confidence 3455655 322 112245666778888888764 69999999999999999875 4 443 4554
No 114
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=22.50 E-value=92 Score=20.90 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHcCCCCCCcEEEc
Q psy4461 71 QRENICQWLTKTGLAKPEQLKVH 93 (95)
Q Consensus 71 ~~~~v~~~L~~~G~~p~~~I~vh 93 (95)
....|+++|.+.|+ |-+.|++.
T Consensus 24 cA~Al~~~L~~~gI-~Gk~i~l~ 45 (100)
T PF15643_consen 24 CASALKQFLKQAGI-PGKIIRLY 45 (100)
T ss_pred HHHHHHHHHHHCCC-CceEEEEE
Confidence 56788889998888 77777653
No 115
>PF04310 MukB: MukB N-terminal; InterPro: IPR007406 This is the N-terminal region of MukB. MukB is involved in the segregation and condensation of prokaryotic chromosomes. MukE (IPR007385 from INTERPRO) along with MukF (IPR005582 from INTERPRO) interact with MukB in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side []. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif. In other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0007059 chromosome segregation, 0030261 chromosome condensation, 0009295 nucleoid; PDB: 1QHL_A 3EUK_H 3EUJ_A.
Probab=22.43 E-value=1.3e+02 Score=22.89 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=16.3
Q ss_pred eEEEEEeeCC-ceEEE----EecCCCcccHHHH
Q psy4461 14 LLLSLLRNGR-KTLTT----VQGLSSEYDLKKI 41 (95)
Q Consensus 14 ~iri~~R~gr-K~vT~----I~Gl~~~~dl~~l 41 (95)
.||.||..|| ++|.+ |.||+..+.|-++
T Consensus 103 gVrleq~agrd~kVdi~pF~l~glp~~v~P~d~ 135 (227)
T PF04310_consen 103 GVRLEQVAGRDKKVDIKPFSLQGLPDSVKPTDL 135 (227)
T ss_dssp EEEEEE-TTTTT-EEEEEEEEES--TTS-HHHH
T ss_pred EEEEEeecCCCCcccceeEEEecCcccCChHHH
Confidence 4677777776 55655 7899887777666
No 116
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=22.42 E-value=1.3e+02 Score=18.70 Aligned_cols=23 Identities=17% Similarity=0.534 Sum_probs=17.1
Q ss_pred CchhHHHHHHHHH-cCCCCCCcEEE
Q psy4461 69 GDQRENICQWLTK-TGLAKPEQLKV 92 (95)
Q Consensus 69 GD~~~~v~~~L~~-~G~~p~~~I~v 92 (95)
|--=+.+.+||.+ .|+ |+++|+|
T Consensus 39 GkAN~ali~~La~~l~v-~ks~i~i 62 (77)
T PF02594_consen 39 GKANKALIRFLAKALGV-PKSDIEI 62 (77)
T ss_dssp CCHHHHHHHHHHHHCT---TTCEEE
T ss_pred ChhHHHHHHHHHHHhCC-CcccEEE
Confidence 6677889999988 688 8888865
No 117
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=22.41 E-value=1e+02 Score=20.55 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=16.6
Q ss_pred hhHHHHHHHHH-cCCCCCCcEEEc
Q psy4461 71 QRENICQWLTK-TGLAKPEQLKVH 93 (95)
Q Consensus 71 ~~~~v~~~L~~-~G~~p~~~I~vh 93 (95)
+...|.++|.+ .|+ |.+.|.|.
T Consensus 77 ~s~~i~~~l~~~LgI-p~dRiYI~ 99 (113)
T PTZ00450 77 MTPRITAAITKECGI-PAERIYVF 99 (113)
T ss_pred HHHHHHHHHHHHcCC-CcccEEEE
Confidence 34577888887 699 88888763
No 118
>PRK06667 motB flagellar motor protein MotB; Validated
Probab=22.34 E-value=81 Score=23.57 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=19.2
Q ss_pred hHHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 72 RENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 72 ~~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
...|.++|.+.|+.|++.|.+.||
T Consensus 190 A~aV~~~L~~~g~~~~~ri~~~G~ 213 (252)
T PRK06667 190 AVNMLEYILNYGDQSESWFQVSGF 213 (252)
T ss_pred HHHHHHHHHHcCCCCcceEEEEEE
Confidence 346899999999867888888774
No 119
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=22.15 E-value=2.4e+02 Score=18.55 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=22.0
Q ss_pred EEEEecCCCcccHHHHHHHHhhhc-ccceEEeec
Q psy4461 26 LTTVQGLSSEYDLKKIVRACKKEF-ACNGTVIEH 58 (95)
Q Consensus 26 vT~I~Gl~~~~dl~~lak~lkk~~-acggsv~~~ 58 (95)
.-.|.||+...|...+...|++.. .|||-|..-
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v 37 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV 37 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE
Confidence 457899999889999988888776 688887764
No 120
>PF04746 DUF575: Protein of unknown function (DUF575); InterPro: IPR006835 This represents a conserved region found in a number of Chlamydophila pneumoniae proteins.
Probab=22.04 E-value=86 Score=21.00 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=21.9
Q ss_pred cCchhHHHHHHHHHc--CCCCCCcEEEcC
Q psy4461 68 QGDQRENICQWLTKT--GLAKPEQLKVHG 94 (95)
Q Consensus 68 QGD~~~~v~~~L~~~--G~~p~~~I~vhg 94 (95)
-=||...|.++|... -+.|+++=+|||
T Consensus 65 G~dhisrve~~Lk~~R~~i~~ed~~KVHG 93 (101)
T PF04746_consen 65 GRDHISRVEEYLKSLRVTIEPEDLGKVHG 93 (101)
T ss_pred CCCchHHHHHHHHHhcCCCCccccccccC
Confidence 358999999999983 466777779998
No 121
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=21.89 E-value=71 Score=18.01 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=12.7
Q ss_pred cccHHHHHHHHhhhccc
Q psy4461 35 EYDLKKIVRACKKEFAC 51 (95)
Q Consensus 35 ~~dl~~lak~lkk~~ac 51 (95)
.-||+++.+.|.++++-
T Consensus 20 PPDLdel~r~l~~kl~~ 36 (42)
T PF12221_consen 20 PPDLDELFRKLQDKLGG 36 (42)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 34788888888887764
No 122
>PRK09039 hypothetical protein; Validated
Probab=21.57 E-value=58 Score=25.72 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=19.0
Q ss_pred hHHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 72 RENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 72 ~~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
...|.++|.+.|+ |.+.|.+.||
T Consensus 293 A~aV~~~Li~~Gi-~~~ri~~~G~ 315 (343)
T PRK09039 293 AISVVKFLIALGV-PADRLAAAGF 315 (343)
T ss_pred HHHHHHHHHHCCC-CHHHeEEEEe
Confidence 3578999999999 8888888775
No 123
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=21.53 E-value=2.7e+02 Score=18.84 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=27.5
Q ss_pred HHHHHHHhhhccc-ceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 39 KKIVRACKKEFAC-NGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 39 ~~lak~lkk~~ac-ggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
+.....|++.++- ..++.+....--.|.|||.....+.+-|..
T Consensus 54 ~~~~~~l~~~~~~~~v~v~d~s~~~~~l~lqGP~A~~vL~~l~~ 97 (152)
T TIGR01375 54 AVLMAALAAALGPEPHAVVDLSGGRTALRISGPMAEEVLAKGCA 97 (152)
T ss_pred HHHHHHHHHHhCCCccEEEEecCCEEEEEEEChhHHHHHHhcCC
Confidence 3444455555543 467766433346999999988888777643
No 124
>PRK00339 minC septum formation inhibitor; Reviewed
Probab=21.46 E-value=2.8e+02 Score=20.88 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=37.5
Q ss_pred eeCCceEEEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCc-------hhHHHHHHHHHcCCC
Q psy4461 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGD-------QRENICQWLTKTGLA 85 (95)
Q Consensus 20 R~grK~vT~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD-------~~~~v~~~L~~~G~~ 85 (95)
|..+..++++. ....|+++|...|.++++-+.....+ ..-.|.+..- ....+.++|.++|+.
T Consensus 16 Kg~~~~l~~l~--~~~~d~~~l~~~L~~kl~~a~~FF~~--~pvvld~~~~~~~~~~~dl~~L~~~l~~~gl~ 84 (249)
T PRK00339 16 KGSMLAITVLE--LARNDLDRLDRQLAAKVAQAPNFFSN--TPLVLALDKLPEGEGELDLPGLMRICRRHGLR 84 (249)
T ss_pred EcCcceEEEEE--cCCCCHHHHHHHHHHHHHhChhhhCC--CeEEEEecccccccchHHHHHHHHHHHHCCCE
Confidence 44456666663 23468999999999988866554442 1123333321 134678888888774
No 125
>PF03958 Secretin_N: Bacterial type II/III secretion system short domain; InterPro: IPR005644 This is a group of NolW-like proteins, which are closely related to bacterial type II and III secretion system protein (IPR004846 from INTERPRO).; PDB: 3EZJ_C 2Y3M_A 3OSS_D.
Probab=21.17 E-value=1.9e+02 Score=16.99 Aligned_cols=46 Identities=11% Similarity=0.263 Sum_probs=28.9
Q ss_pred cccHHHHHHHHhhhcc--------------------cceEEeecCCCceEEEEcCc--hhHHHHHHHHH
Q psy4461 35 EYDLKKIVRACKKEFA--------------------CNGTVIEHPEYGEVLQLQGD--QRENICQWLTK 81 (95)
Q Consensus 35 ~~dl~~lak~lkk~~a--------------------cggsv~~~~~~~~~I~vQGD--~~~~v~~~L~~ 81 (95)
..+.+++++.|+..++ -+++|..++. ...|.|.|+ ..++|.+++.+
T Consensus 8 ~~~A~~v~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~-tNsliv~g~~~~~~~i~~li~~ 75 (82)
T PF03958_consen 8 YASAEEVASVLQQLLGGGSGSSSGSGGSSGSGSSGSSSGRIVADER-TNSLIVRGTPEDLEQIRELIKQ 75 (82)
T ss_dssp SS-HHHHHHHHHHHH----------------S-HHHTTTEEEEECT-TTEEEEEEEHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhhhhcccccccccccccccCCCCCeEEEEECC-CCEEEEEeCHHHHHHHHHHHHH
Confidence 4678899999999994 3344444322 247778887 44577777654
No 126
>PRK12863 YciI-like protein; Reviewed
Probab=21.05 E-value=1.9e+02 Score=18.12 Aligned_cols=48 Identities=10% Similarity=0.306 Sum_probs=30.7
Q ss_pred hhhcccceEEeecCC---CceEEEEcCchhHHHHHHHHHcCCCCCC---cEEEc
Q psy4461 46 KKEFACNGTVIEHPE---YGEVLQLQGDQRENICQWLTKTGLAKPE---QLKVH 93 (95)
Q Consensus 46 kk~~acggsv~~~~~---~~~~I~vQGD~~~~v~~~L~~~G~~p~~---~I~vh 93 (95)
+..+-++|...+.++ .|..+.++-+-++++.+++.+-.|+... .++|+
T Consensus 32 ~g~~l~~Gp~~~~~g~~~~G~~~i~~a~~~eea~~~~~~DP~~~~G~~~~~~I~ 85 (94)
T PRK12863 32 EGRLLAAGPLLDDDGKPMVGSLVVVEAESRAAAEAFAAADPFAKAGLYESVDIK 85 (94)
T ss_pred CCeEEEeCCCcCCCCCCccceEEEEEeCCHHHHHHHHHcCChhhcCCeeEEEEE
Confidence 334555555554332 1568888999999999999886554332 45554
No 127
>KOG2382|consensus
Probab=20.96 E-value=2.7e+02 Score=22.16 Aligned_cols=73 Identities=8% Similarity=0.194 Sum_probs=51.2
Q ss_pred CceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCc----eEEEEcCchhHHHHHHHHHc-CCCCCCcEEEcCC
Q psy4461 23 RKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYG----EVLQLQGDQRENICQWLTKT-GLAKPEQLKVHGF 95 (95)
Q Consensus 23 rK~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~----~~I~vQGD~~~~v~~~L~~~-G~~p~~~I~vhg~ 95 (95)
+=.+-++.||-. +-+...+++.|.+++++.--..+...-| -.+.-=++..+.+..|+... |-.....+.++||
T Consensus 52 ~Pp~i~lHGl~GS~~Nw~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~~~h~~~~ma~dv~~Fi~~v~~~~~~~~~~l~GH 130 (315)
T KOG2382|consen 52 APPAIILHGLLGSKENWRSVAKNLSRKLGRDVYAVDVRNHGSSPKITVHNYEAMAEDVKLFIDGVGGSTRLDPVVLLGH 130 (315)
T ss_pred CCceEEecccccCCCCHHHHHHHhcccccCceEEEecccCCCCccccccCHHHHHHHHHHHHHHcccccccCCceeccc
Confidence 357788999998 8899999999999999966666533222 24444566777888888774 4334556666664
No 128
>PRK06934 flavodoxin; Provisional
Probab=20.23 E-value=3.7e+02 Score=20.08 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=26.0
Q ss_pred HHHHHHHHhhhcccce-EEeecCCCceEEEEcCch------hHHHHHHHHHcCCCC
Q psy4461 38 LKKIVRACKKEFACNG-TVIEHPEYGEVLQLQGDQ------RENICQWLTKTGLAK 86 (95)
Q Consensus 38 l~~lak~lkk~~acgg-sv~~~~~~~~~I~vQGD~------~~~v~~~L~~~G~~p 86 (95)
+....+.|++.|. ++ .+.+ -+.+.|+. .++|.+||.+.|+.|
T Consensus 173 ~g~s~~~i~~l~~-~a~~v~~------Gl~i~~~~~~~~~~~~~I~~Wl~~lg~~~ 221 (221)
T PRK06934 173 FSDSLREIKRLQP-NAQLVTQ------GLAISRNDVTDDDTPKEIINWLNTLPNMP 221 (221)
T ss_pred ccchHHHHHHHcC-Ccceecc------ceeeecCcccccchHHHHHHHHHHcCCCC
Confidence 4445556665543 34 4554 35566653 357999999999854
No 129
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=20.17 E-value=1.7e+02 Score=17.85 Aligned_cols=25 Identities=20% Similarity=0.496 Sum_probs=16.7
Q ss_pred eEEEEcCchhHHHHHHHHHcCCCCCCcE
Q psy4461 63 EVLQLQGDQRENICQWLTKTGLAKPEQL 90 (95)
Q Consensus 63 ~~I~vQGD~~~~v~~~L~~~G~~p~~~I 90 (95)
+.+++-.. ..+.++|.+.|+ +.+.+
T Consensus 10 ~~~e~~~~--~tv~dLL~~l~~-~~~~v 34 (68)
T COG2104 10 KEVEIAEG--TTVADLLAQLGL-NPEGV 34 (68)
T ss_pred EEEEcCCC--CcHHHHHHHhCC-CCceE
Confidence 45555444 678888888888 55544
No 130
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=20.15 E-value=82 Score=22.11 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=24.2
Q ss_pred eEEEEcCc--hhHHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 63 EVLQLQGD--QRENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 63 ~~I~vQGD--~~~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
..+-|=|+ ....+.++|.+.|+ |+++|...+|
T Consensus 188 ~~vyicGp~~m~~~~~~~L~~~Gv-~~~~i~~e~f 221 (222)
T cd06194 188 DVVYLCGAPSMVNAVRRRAFLAGA-PMKRIYADPF 221 (222)
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCC-CHHHeeeccc
Confidence 35666676 45678889999999 9998877654
No 131
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=20.03 E-value=78 Score=20.61 Aligned_cols=22 Identities=18% Similarity=0.546 Sum_probs=14.9
Q ss_pred hhHHHHHHHHH-cCCCCCCcEEEc
Q psy4461 71 QRENICQWLTK-TGLAKPEQLKVH 93 (95)
Q Consensus 71 ~~~~v~~~L~~-~G~~p~~~I~vh 93 (95)
+...|.++|.+ .|+ |.+.|.|+
T Consensus 75 ~s~~i~~~l~~~LgI-p~~Riyi~ 97 (114)
T PF01187_consen 75 YSAAITEFLEEELGI-PPDRIYIN 97 (114)
T ss_dssp HHHHHHHHHHHHHT---GGGEEEE
T ss_pred HHHHHHHHHHHHhCC-CcCceEEE
Confidence 45678889987 599 78888764
Done!