Query psy4461
Match_columns 95
No_of_seqs 117 out of 809
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 17:41:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_F EIF1; ribosome, transla 100.0 3.6E-33 1.2E-37 185.6 11.0 85 11-95 17-101 (101)
2 2ogh_A Eukaryotic translation 100.0 1E-32 3.6E-37 185.1 9.8 84 12-95 25-108 (108)
3 2if1_A EIF1, SUI1; translation 100.0 5E-32 1.7E-36 186.2 5.5 84 12-95 43-126 (126)
4 1d1r_A Hypothetical 11.4 KD pr 99.9 1.9E-24 6.7E-29 146.6 3.8 73 12-90 30-106 (116)
5 1k8b_A EIF-2-beta, probable tr 94.9 0.026 8.8E-07 32.7 3.2 44 19-69 3-51 (52)
6 1gxu_A Hydrogenase maturation 94.8 0.21 7.1E-06 31.4 7.8 55 28-84 12-66 (91)
7 2d74_B Translation initiation 94.2 0.065 2.2E-06 37.1 4.5 52 19-77 38-94 (148)
8 1urr_A CG18505 protein; acylph 93.7 0.42 1.4E-05 30.5 7.4 57 28-84 16-74 (102)
9 1nee_A EIF-2-beta, probable tr 93.5 0.027 9.3E-07 38.5 1.5 51 20-77 37-92 (138)
10 2vh7_A Acylphosphatase-1; hydr 93.2 0.55 1.9E-05 29.7 7.3 57 28-84 13-71 (99)
11 1ulr_A Putative acylphosphatas 92.8 0.78 2.7E-05 28.4 7.5 55 28-83 7-63 (88)
12 2fhm_A Probable acylphosphatas 92.5 0.88 3E-05 28.2 7.5 52 28-80 7-58 (91)
13 2gv1_A Probable acylphosphatas 92.1 0.44 1.5E-05 29.8 5.7 62 28-90 9-72 (92)
14 2lxf_A Uncharacterized protein 91.5 0.93 3.2E-05 30.1 7.0 54 29-83 40-95 (121)
15 2bjd_A Acylphosphatase; hypert 90.9 1.3 4.5E-05 28.1 7.2 52 28-80 19-70 (101)
16 1w2i_A Acylphosphatase; hydrol 90.8 0.96 3.3E-05 28.2 6.3 53 28-80 9-63 (91)
17 3trg_A Acylphosphatase; fatty 89.4 1.4 4.7E-05 27.9 6.2 53 28-81 17-69 (98)
18 1aps_A Acylphosphatase; hydrol 87.8 0.42 1.4E-05 30.2 3.0 53 28-81 12-64 (98)
19 4hhu_A OR280; engineered prote 85.5 3.6 0.00012 28.1 6.8 62 20-81 38-103 (170)
20 3cw2_K Translation initiation 82.2 0.049 1.7E-06 37.3 -3.7 53 19-77 36-93 (139)
21 2e9h_A EIF-5, eukaryotic trans 81.8 1.4 4.9E-05 30.6 3.6 50 25-77 39-93 (157)
22 3vth_A Hydrogenase maturation 68.7 15 0.0005 31.0 7.0 57 27-84 14-72 (761)
23 2hqs_H Peptidoglycan-associate 66.3 3.4 0.00012 26.3 2.2 23 72-95 63-85 (118)
24 2g2k_A EIF-5, eukaryotic trans 65.3 1.8 6E-05 30.5 0.7 50 25-77 32-86 (170)
25 2qsw_A Methionine import ATP-b 63.8 18 0.00062 22.1 5.2 29 62-94 68-98 (100)
26 3ced_A Methionine import ATP-b 63.7 12 0.00041 23.1 4.4 47 38-84 33-90 (98)
27 2aiz_P Outer membrane protein 61.6 4.6 0.00016 26.4 2.2 23 72-95 87-109 (134)
28 2nlv_A XISI protein-like; XISI 60.1 5.1 0.00017 26.4 2.1 29 64-93 68-97 (112)
29 3cyp_B Chemotaxis protein MOTB 58.8 5.5 0.00019 26.0 2.2 23 72-95 66-88 (138)
30 2nwv_A XISI protein-like; YP_3 58.7 5.4 0.00019 26.3 2.1 29 64-93 70-99 (114)
31 3d7q_A XISI protein-like; stru 58.4 5.1 0.00017 26.3 1.9 29 64-93 68-97 (112)
32 3hyi_A Protein DUF199/WHIA; la 58.4 55 0.0019 24.5 8.2 56 37-93 107-165 (295)
33 2kgw_A Outer membrane protein 57.5 5.2 0.00018 25.6 1.9 23 72-95 81-103 (129)
34 3ldt_A Outer membrane protein, 54.9 11 0.00038 25.4 3.3 22 73-95 112-133 (169)
35 4erh_A Outer membrane protein 52.8 5.6 0.00019 26.0 1.5 22 73-95 82-103 (148)
36 2qrr_A Methionine import ATP-b 52.0 24 0.00082 21.6 4.3 45 40-84 38-92 (101)
37 3dhx_A Methionine import ATP-b 51.2 14 0.00047 23.1 3.1 44 41-84 37-90 (106)
38 1r1m_A Outer membrane protein 51.1 8.5 0.00029 26.1 2.2 22 73-95 73-94 (164)
39 3oon_A Outer membrane protein 50.6 8.8 0.0003 24.1 2.1 23 73-95 75-97 (123)
40 2nvm_A FDXN element excision c 50.2 14 0.00047 24.8 3.0 28 64-92 82-110 (126)
41 3s06_A Motility protein B; pep 49.6 7.4 0.00025 26.0 1.7 23 72-95 94-116 (166)
42 2k1s_A Inner membrane lipoprot 47.1 9.4 0.00032 25.1 1.9 22 73-95 92-113 (149)
43 3s0y_A Motility protein B; pep 45.7 11 0.00039 25.8 2.2 23 72-95 121-143 (193)
44 3td3_A Outer membrane protein 45.2 13 0.00044 23.4 2.2 23 72-95 71-94 (123)
45 3e19_A FEOA; transcriptional r 43.3 31 0.0011 19.9 3.6 29 63-93 17-45 (77)
46 2jvf_A De novo protein M7; tet 39.5 66 0.0023 19.9 7.5 72 15-94 8-87 (96)
47 2lx9_A Ferrous iron transport 39.1 36 0.0012 20.3 3.5 29 64-92 11-39 (83)
48 2gx5_A GTP-sensing transcripti 38.7 35 0.0012 23.6 3.8 50 35-84 31-81 (170)
49 4ici_A Putative flavoprotein; 37.4 81 0.0028 20.7 5.4 55 21-84 116-170 (171)
50 3khn_A MOTB protein, putative; 37.4 15 0.00051 24.8 1.7 23 72-95 113-135 (174)
51 2h3j_A Hypothetical protein PA 35.4 40 0.0014 19.1 3.2 29 64-92 12-40 (75)
52 2zf8_A MOTY, component of sodi 34.8 18 0.00061 26.6 1.9 23 72-95 220-242 (278)
53 2zvy_A Chemotaxis protein MOTB 33.4 32 0.0011 23.6 2.9 23 72-95 121-144 (183)
54 2l26_A Uncharacterized protein 33.2 24 0.00083 25.9 2.4 23 72-95 228-250 (284)
55 4g9i_A Hydrogenase maturation 32.6 72 0.0025 26.8 5.4 55 28-82 7-63 (772)
56 3dfe_A Putative PII-like signa 31.4 48 0.0016 21.1 3.3 22 36-57 16-37 (111)
57 2gcx_A FEOA, ferrous iron tran 31.0 24 0.00082 20.2 1.7 30 64-93 11-40 (75)
58 2y3m_A Emhofq, protein transpo 29.9 98 0.0034 20.2 4.9 58 32-91 110-174 (175)
59 4aff_A Nitrogen regulatory pro 29.8 56 0.0019 20.8 3.4 21 64-84 5-25 (116)
60 2kl0_A Putative thiamin biosyn 28.9 30 0.001 20.3 1.8 17 73-90 15-31 (73)
61 2k5l_A FEOA; structure, NESG, 28.9 61 0.0021 18.9 3.3 27 64-92 15-41 (81)
62 1jrm_A MTH0637, conserved hypo 28.4 1.1E+02 0.0039 19.2 4.7 45 38-82 53-98 (104)
63 3dzc_A UDP-N-acetylglucosamine 27.0 71 0.0024 23.6 4.1 59 19-87 21-80 (396)
64 2eg2_A Nitrogen regulatory pro 26.5 71 0.0024 19.8 3.4 20 37-56 12-31 (112)
65 2f9f_A First mannosyl transfer 26.1 1.3E+02 0.0043 19.0 5.3 62 22-95 22-85 (177)
66 2ns1_B Nitrogen regulatory pro 25.4 75 0.0026 19.8 3.4 21 64-84 9-29 (116)
67 1sse_B AP-1 like transcription 25.4 25 0.00085 22.1 1.1 20 35-54 49-68 (86)
68 1hwu_A PII protein; herbaspiri 24.7 63 0.0021 20.0 2.9 20 37-56 12-31 (112)
69 2dsm_A Hypothetical protein YQ 24.7 58 0.002 19.7 2.6 32 50-84 24-58 (72)
70 1k8r_B Protein kinase BYR2; si 24.4 90 0.0031 20.2 3.6 25 63-87 13-37 (110)
71 3nb3_A Outer membrane protein 23.9 16 0.00056 26.3 0.0 28 67-95 273-300 (346)
72 1vfj_A Nitrogen regulatory pro 23.9 66 0.0023 20.0 2.9 20 37-56 12-31 (116)
73 3bzq_A Nitrogen regulatory pro 23.7 67 0.0023 19.9 2.9 20 37-56 14-33 (114)
74 3klb_A Putative flavoprotein; 23.4 1E+02 0.0036 19.8 4.0 38 40-84 124-162 (162)
75 3mhx_A Putative ferrous iron t 22.9 61 0.0021 19.0 2.5 29 64-92 15-44 (85)
76 1n91_A ORF, hypothetical prote 22.8 73 0.0025 20.4 3.0 23 69-92 49-72 (108)
77 2gw8_A PII signal transduction 22.8 72 0.0025 19.8 2.9 20 37-56 14-33 (114)
78 2o66_A PII protein; regulation 22.6 88 0.003 20.4 3.4 20 37-56 24-43 (135)
79 3ncq_A Nitrogen regulatory pro 22.0 67 0.0023 20.6 2.7 21 64-84 5-25 (119)
80 2zov_A Chemotaxis protein MOTB 20.9 58 0.002 22.8 2.4 23 72-95 132-155 (210)
81 1ify_A HHR23A, UV excision rep 20.5 26 0.00089 19.1 0.4 21 67-88 3-23 (49)
82 3t9z_A GLNK3, nitrogen regulat 20.3 67 0.0023 20.5 2.4 20 37-56 12-31 (118)
No 1
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=100.00 E-value=3.6e-33 Score=185.63 Aligned_cols=85 Identities=36% Similarity=0.672 Sum_probs=81.7
Q ss_pred cCceEEEEEeeCCceEEEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCCCCCCcE
Q psy4461 11 CDLLLLSLLRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQL 90 (95)
Q Consensus 11 ~~~~iri~~R~grK~vT~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~~p~~~I 90 (95)
..++|++++|+|||.||+|+||+.++|+++|||.||++|||||||+++|+++++|+||||||++|.+||.++|++|+++|
T Consensus 17 ~~v~I~~~~R~g~K~VT~V~Gl~~~~dlk~laK~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~G~~~~~~I 96 (101)
T 2xzm_F 17 THIHIRVEQRRGRKCFTTVEGIPPEFDYEKIMKYWKKWLSCNATIVEEDEGKKVIKLNGDHRNQIQQFLSEEGIAAVDNI 96 (101)
T ss_dssp CCEEEEEEEEETTEEEEEEECCCTTSCTHHHHHHHHHHHTSCCCEEECSTTCEEEEEESCCHHHHHHHHHHHSSSCTTTE
T ss_pred CeEEEEEEeccCCccEEEEecCCCchhHHHHHHHHHHHhcCCeEEecCCCCceEEEEeCcHHHHHHHHHHHcCCCCHHHE
Confidence 46789999999999999999999889999999999999999999999998889999999999999999999999999999
Q ss_pred EEcCC
Q psy4461 91 KVHGF 95 (95)
Q Consensus 91 ~vhg~ 95 (95)
++|||
T Consensus 97 ~vhg~ 101 (101)
T 2xzm_F 97 TIHGI 101 (101)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99998
No 2
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=99.98 E-value=1e-32 Score=185.06 Aligned_cols=84 Identities=49% Similarity=0.892 Sum_probs=81.0
Q ss_pred CceEEEEEeeCCceEEEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCCCCCCcEE
Q psy4461 12 DLLLLSLLRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLK 91 (95)
Q Consensus 12 ~~~iri~~R~grK~vT~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~~p~~~I~ 91 (95)
.++||+++|+|||.||+|+||+.++|+++|||+||++|||||||+++|+++++|+||||||++|.+||.++|++|+++|+
T Consensus 25 ~V~Ir~~~R~g~K~VT~V~Gl~~~~dlk~lak~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~g~~~~~~I~ 104 (108)
T 2ogh_A 25 YIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIK 104 (108)
T ss_dssp SEEEEEECCSSSCCEEEEECCCTTSCHHHHHHHHHHHHCCCEEEECCTTSSCEEEEESSCHHHHHHHHHHHHTSCCSCEE
T ss_pred eEEEEEEEccCCceEEEEeCCCcchhHHHHHHHHHHHhcCceEEecCCCCceEEEEcCCHHHHHHHHHHHcCCCCHHHEE
Confidence 57999999999999999999998889999999999999999999999988899999999999999999999999999999
Q ss_pred EcCC
Q psy4461 92 VHGF 95 (95)
Q Consensus 92 vhg~ 95 (95)
+|||
T Consensus 105 vhg~ 108 (108)
T 2ogh_A 105 IHGF 108 (108)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 9998
No 3
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=99.97 E-value=5e-32 Score=186.23 Aligned_cols=84 Identities=70% Similarity=1.109 Sum_probs=80.5
Q ss_pred CceEEEEEeeCCceEEEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCCCCCCcEE
Q psy4461 12 DLLLLSLLRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLK 91 (95)
Q Consensus 12 ~~~iri~~R~grK~vT~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~~p~~~I~ 91 (95)
.++||+++|+|||.||+|+||+.++|+++|||+||++|||||||+++|+++.+|+||||||++|.+||.++|++|+++|+
T Consensus 43 ~V~Ir~~~R~grK~VT~V~GL~~~~dlk~laK~LKkk~acgGtVk~~~e~g~~I~IQGD~r~~I~~~L~~~G~~~~~~I~ 122 (126)
T 2if1_A 43 YIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLK 122 (126)
T ss_dssp CEECCCCCSSSSCCBCEEBSCCTTSCHHHHHTTHHHHTCCCEEEECCTTTSSEEEESBCCHHHHHHHHHHHTSSCTTTEE
T ss_pred eEEEEEEeecCCccEEEEeCCCCchhHHHHHHHHHHHhcCCeEEecCCCCccEEEEcCCHHHHHHHHHHHcCCCChhhEE
Confidence 46888889999999999999998889999999999999999999999888899999999999999999999999999999
Q ss_pred EcCC
Q psy4461 92 VHGF 95 (95)
Q Consensus 92 vhg~ 95 (95)
||||
T Consensus 123 vhgf 126 (126)
T 2if1_A 123 VHGF 126 (126)
T ss_dssp CCCC
T ss_pred eeCC
Confidence 9998
No 4
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=99.89 E-value=1.9e-24 Score=146.65 Aligned_cols=73 Identities=27% Similarity=0.475 Sum_probs=63.6
Q ss_pred CceEEEE-EeeCC--ceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCCCCC
Q psy4461 12 DLLLLSL-LRNGR--KTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKP 87 (95)
Q Consensus 12 ~~~iri~-~R~gr--K~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~~p~ 87 (95)
+..|+|. +|+|| |.||+|+||+. ++|+++|||+||++|||||||+++ +|+||||||++|.+||.++|| +.
T Consensus 30 ~~~V~I~~er~gR~GK~VT~V~Gl~~~~~dlk~laK~LKkk~acgGtVk~~-----~IeiQGD~r~~i~~~L~~~G~-~v 103 (116)
T 1d1r_A 30 DGVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKDG-----VIEIQGDKRDLLKSLLEAKGM-KV 103 (116)
T ss_dssp CCEEEEEECCCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBCCSS-----CEEECSCCHHHHHHHHHHHTC-EE
T ss_pred CCeEEEEEEeCCCCCCeEEEEeCCcCchhhHHHHHHHHHHHhcCCcEEcCC-----EEEEeCcHHHHHHHHHHHcCC-Cc
Confidence 4445553 37677 99999999999 999999999999999999999975 999999999999999999998 55
Q ss_pred CcE
Q psy4461 88 EQL 90 (95)
Q Consensus 88 ~~I 90 (95)
.+|
T Consensus 104 k~i 106 (116)
T 1d1r_A 104 KLA 106 (116)
T ss_dssp CCC
T ss_pred cee
Confidence 544
No 5
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=94.87 E-value=0.026 Score=32.73 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=36.4
Q ss_pred EeeCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEeecCCCceEEEEcC
Q psy4461 19 LRNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQG 69 (95)
Q Consensus 19 ~R~grK~vT~I~Gl~~-----~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQG 69 (95)
.|-|+| |++.||.+ .=+++.+.|.|.+.++.+|++.. ....|+|
T Consensus 3 ~~eG~k--Tvi~Nf~~Ia~~L~R~p~hv~ky~~~ELGt~g~id~-----~rlii~G 51 (52)
T 1k8b_A 3 LIEGNR--TIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLEG-----GRLILQR 51 (52)
T ss_dssp EEETTE--EEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEEET-----TEEEEEC
T ss_pred EEEcCe--EEEECHHHHHHHHCCCHHHHHHHHHHHhCCCeeecC-----CEEEEeC
Confidence 466777 99999986 24599999999999999999983 3777777
No 6
>1gxu_A Hydrogenase maturation protein HYPF; phosphatase, acylphosphatases, hydrogenase maturations, fibril formation, zinc-finger, complete proteome; 1.27A {Escherichia coli} SCOP: d.58.10.1 PDB: 1gxt_A
Probab=94.85 E-value=0.21 Score=31.38 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=46.5
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCC
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGL 84 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~ 84 (95)
.|+|.-.++-+-..+..+.+.++=.|.|...+.+ -+|++||+. +.+.++|.+.|-
T Consensus 12 ~V~G~VQGVGFR~~v~~~A~~lgL~G~VrN~~dG-Vei~~eG~~-~~f~~~l~~~~P 66 (91)
T 1gxu_A 12 RIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGDG-VEVRLREDP-EVFLVQLYQHCP 66 (91)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTCCEEEEECSSS-EEEEESSCC-HHHHHHHHHTCC
T ss_pred EEEEeeCCcCHHHHHHHHHHHcCCeEEEEECCCc-EEEEEEECH-HHHHHHHhhCCC
Confidence 4788777777888899999999999999988766 899999999 888888887653
No 7
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=94.16 E-value=0.065 Score=37.09 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=41.8
Q ss_pred EeeCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHH
Q psy4461 19 LRNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQ 77 (95)
Q Consensus 19 ~R~grK~vT~I~Gl~~-----~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~ 77 (95)
.+-|+| |+|.||.+ .=+++-+.|.|...+|++|++.. ....|+|.+..+-.+
T Consensus 38 ~~eGkK--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~-----~rlii~G~~~~~~i~ 94 (148)
T 2d74_B 38 TIEGNK--TIIENFKDIADALNRDPQHLLKFLLREIATAGTLEG-----RRVVLQGRFTPYLIA 94 (148)
T ss_dssp EEETTE--EEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEET-----TEEEESSCCCHHHHH
T ss_pred EEecCe--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecC-----CEEEEEeeeCHHHHH
Confidence 455654 99999976 34589999999999999999984 489999998775444
No 8
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=93.67 E-value=0.42 Score=30.46 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=45.3
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCch--hHHHHHHHHHcCC
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ--RENICQWLTKTGL 84 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~--~~~v~~~L~~~G~ 84 (95)
.|+|.-.++-+-..+..+.+.++-.|.|...+.+.-+|++||+. .+...++|...|-
T Consensus 16 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~~gP 74 (102)
T 1urr_A 16 EIFGRVQGVFFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLENNRI 74 (102)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHCCS
T ss_pred EEEEeECCcChhHHHHHHHHHhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhcCC
Confidence 47887777778888999999999999999887666899999985 4566666665553
No 9
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=93.47 E-value=0.027 Score=38.55 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=41.6
Q ss_pred eeCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHH
Q psy4461 20 RNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQ 77 (95)
Q Consensus 20 R~grK~vT~I~Gl~~-----~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~ 77 (95)
+-|+| |+|.||.+ .=+++.+.|.|...++++|++.. ....|+|.|..+-.+
T Consensus 37 ~eG~k--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~-----~rlii~G~~~~~~i~ 92 (138)
T 1nee_A 37 IQGNR--TFIQNFREVADALNRDPQHLLKFLLRELGTAGNLEG-----GRAILQGKFTHFLIN 92 (138)
T ss_dssp EETTE--EEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCBT-----TTEEEESSCSSSHHH
T ss_pred EECCc--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecC-----CEEEEEeeeCHHHHH
Confidence 56776 99999986 34599999999999999999983 478999998764444
No 10
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=93.18 E-value=0.55 Score=29.69 Aligned_cols=57 Identities=23% Similarity=0.211 Sum_probs=45.0
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCch--hHHHHHHHHHcCC
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ--RENICQWLTKTGL 84 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~--~~~v~~~L~~~G~ 84 (95)
.|+|.-.++-+-..+..+.+.++=.|.|...+.+.-+|++||+. .+...++|.+.|-
T Consensus 13 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~~~~p 71 (99)
T 2vh7_A 13 EIFGKVQGVFFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLETRGS 71 (99)
T ss_dssp EEEEECSSSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHHTCS
T ss_pred EEEEeeCCcChHHHHHHHHHHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhcCC
Confidence 47787777778888999999999999999887666899999985 3456666665553
No 11
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=92.80 E-value=0.78 Score=28.35 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=43.7
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCch--hHHHHHHHHHcC
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ--RENICQWLTKTG 83 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~--~~~v~~~L~~~G 83 (95)
.|+|.-.++-+-..+..+.+.++=.|.|...+.+.-+|++||+. .+...++|. .|
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~-~g 63 (88)
T 1ulr_A 7 LVKGRVQGVGYRAFAQKKALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLK-QG 63 (88)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHH-HC
T ss_pred EEEEeECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH-hC
Confidence 47787667778888999999999999999887666899999985 455666665 44
No 12
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=92.48 E-value=0.88 Score=28.23 Aligned_cols=52 Identities=12% Similarity=0.134 Sum_probs=40.9
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLT 80 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~ 80 (95)
.|+|.-.++-+-..+..+.+.++-.|.|...+.+.-+|++||+.. .|.+|+.
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~-~i~~f~~ 58 (91)
T 2fhm_A 7 IVDGRVQGVGFRYFVQMEADKRKLAGWVKNRDDGRVEILAEGPEN-ALQSFVE 58 (91)
T ss_dssp EEEEECCSSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEECHH-HHHHHHH
T ss_pred EEEEeECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHH
Confidence 477876677788889999999999999998877668999999853 3444443
No 13
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=92.06 E-value=0.44 Score=29.78 Aligned_cols=62 Identities=16% Similarity=0.242 Sum_probs=42.5
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCch--hHHHHHHHHHcCCCCCCcE
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ--RENICQWLTKTGLAKPEQL 90 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~--~~~v~~~L~~~G~~p~~~I 90 (95)
.|+|.-.++-+-..+..+.+.++-.|.|...+.+.-+|++||+. .+...++|...| +|...|
T Consensus 9 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~~g-P~~a~V 72 (92)
T 2gv1_A 9 WVYGRVQGVGFRYTTQYEAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGG-PRSARV 72 (92)
T ss_dssp EEEEECTTTTCCSHHHHHHHHHTCCCEEEECSSSCEEEEECSCHHHHHHHHHHHHHTS-STTSEE
T ss_pred EEEEeeCCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHhhccC-CCceEE
Confidence 46676555555556777778889999999877666899999985 455666663445 343333
No 14
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=91.47 E-value=0.93 Score=30.11 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=42.4
Q ss_pred EecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCch--hHHHHHHHHHcC
Q psy4461 29 VQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ--RENICQWLTKTG 83 (95)
Q Consensus 29 I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~--~~~v~~~L~~~G 83 (95)
|+|.-.++-+-..+..+.+.++-.|.|...+.+.-+|++||+- .+.+.++|. .|
T Consensus 40 V~G~VQGVGFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~~~v~~f~~~l~-~g 95 (121)
T 2lxf_A 40 VTGKVQGVFFRKYTKKEADALSLVGYVTNNEDGSVSGVVQGPKEQVDAFVKYLH-KG 95 (121)
T ss_dssp EEECTTCCCCHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHH-HC
T ss_pred EEEeeCCcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHH-hC
Confidence 7888777778888999999999999999987667899999973 334445553 45
No 15
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=90.94 E-value=1.3 Score=28.13 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=41.5
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLT 80 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~ 80 (95)
.|+|.-.++-+-..+..+.+.++-.|.|...+.+.-+|++||+.. .|.+|+.
T Consensus 19 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~-~i~~f~~ 70 (101)
T 2bjd_A 19 RVYGLVQGVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEE-ALSKLLE 70 (101)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHH-HHHHHHH
T ss_pred EEEEeECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHH
Confidence 478877777788889999999999999998876668999999853 3444444
No 16
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=90.75 E-value=0.96 Score=28.16 Aligned_cols=53 Identities=19% Similarity=0.323 Sum_probs=41.4
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchh--HHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQR--ENICQWLT 80 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~--~~v~~~L~ 80 (95)
.|+|.-.++-+-..+..+.+.++=.|.|...+.+.-+|++||+.. +...++|.
T Consensus 9 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 63 (91)
T 1w2i_A 9 KIYGRVQGVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAH 63 (91)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHTT
T ss_pred EEEEEECCcCHHHHHHHHHHHcCCeEEEEECCCCCEEEEEEeCHHHHHHHHHHHH
Confidence 477876677788889999999999999998877668999999854 34444444
No 17
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=89.37 E-value=1.4 Score=27.93 Aligned_cols=53 Identities=23% Similarity=0.167 Sum_probs=42.1
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
.|+|.-.++-+-..+..+.+.++=.|.|...+.+.-+|++||+ .+.|.+|+..
T Consensus 17 ~V~G~VQGVGFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~-~~~l~~f~~~ 69 (98)
T 3trg_A 17 TVSGKVQGVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGE-RDSIMILTEW 69 (98)
T ss_dssp EEEEECSSSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEE-HHHHHHHHHH
T ss_pred EEEEeECCCCccHHHHHHHHHcCCeEEEEECCCCEEEEEEEEC-HHHHHHHHHH
Confidence 5778777777888899999999999999988766689999998 3445555544
No 18
>1aps_A Acylphosphatase; hydrolase(acting on acid anhydrides); NMR {Equus caballus} SCOP: d.58.10.1
Probab=87.83 E-value=0.42 Score=30.21 Aligned_cols=53 Identities=13% Similarity=0.062 Sum_probs=39.5
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
.|+|.-.++-+-..+..+.+.++-.|.|...+.+.-+|++||+.. .|.+|+..
T Consensus 12 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~-~l~~f~~~ 64 (98)
T 1aps_A 12 EVFGRVQGVCFRMYAEDEARKIGVVGWVKNTSKGTVTGQVQGPEE-KVNSMKSW 64 (98)
T ss_dssp EEECTTSCCCCTTHHHHHHHHHTCEEEEECCTTCEEEEEEEEEHH-HHHHHHHS
T ss_pred EEEEEECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHHH
Confidence 477876666666778888888999999998776668999999853 35555543
No 19
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=85.49 E-value=3.6 Score=28.09 Aligned_cols=62 Identities=23% Similarity=0.304 Sum_probs=46.8
Q ss_pred eeCCceEEEEecCCC--cccHHHHHHHHhhhcccceEEee-cCCCc-eEEEEcCchhHHHHHHHHH
Q psy4461 20 RNGRKTLTTVQGLSS--EYDLKKIVRACKKEFACNGTVIE-HPEYG-EVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 20 R~grK~vT~I~Gl~~--~~dl~~lak~lkk~~acggsv~~-~~~~~-~~I~vQGD~~~~v~~~L~~ 81 (95)
-.|+..+-+|+|.+. .-++.+-|..|++.|.-..+..- +.+.| ..|.+.||-.+.+.+.|.+
T Consensus 38 l~gn~l~i~itgvpeqvrkelakeaerl~~efni~v~y~imgsgsgvm~i~f~gddlea~ekalke 103 (170)
T 4hhu_A 38 LSGNRLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMGSGSGVMVIVFEGDDLEALEKALKE 103 (170)
T ss_dssp EETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHH
T ss_pred EeCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHH
Confidence 368899999999997 45566777788999887766654 22333 7999999998887777765
No 20
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=82.18 E-value=0.049 Score=37.28 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=41.9
Q ss_pred EeeCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHH
Q psy4461 19 LRNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQ 77 (95)
Q Consensus 19 ~R~grK~vT~I~Gl~~-----~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~ 77 (95)
.+-|+| |+|.||.+ .=+++.+.|.|...++++|++.++ ....|+|.|..+-.+
T Consensus 36 ~~eG~k--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~~----~rlii~G~~~~~~i~ 93 (139)
T 3cw2_K 36 LNIGNT--TIIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDK----GELVIQGKFSSQVIN 93 (139)
T ss_dssp CCCSSS--CCCSCSSSTTTTTSSCCTTTHHHHSCCSSCCCCCSSS----CCCTTTCSCCSCCSC
T ss_pred EEECCe--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceEECCC----CeEEEEeeeCHHHHH
Confidence 456776 99999986 235999999999999999999753 478889998764433
No 21
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.77 E-value=1.4 Score=30.59 Aligned_cols=50 Identities=10% Similarity=0.042 Sum_probs=39.9
Q ss_pred eEEEEecCCC-----cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHH
Q psy4461 25 TLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQ 77 (95)
Q Consensus 25 ~vT~I~Gl~~-----~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~ 77 (95)
.-|+|.||.+ .=+++.+.|.|...+++.|++.+. +....|+|.|..+-.+
T Consensus 39 ~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELGt~g~id~~---~~rlii~G~~~~~~i~ 93 (157)
T 2e9h_A 39 IKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVK---NDRYIVNGSHEANKLQ 93 (157)
T ss_dssp CEEEETTHHHHHHHTTSCTHHHHHHHHHHHTCCEEEETT---TTEEEEEBCCCHHHHH
T ss_pred cEEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecCC---CCEEEEEeeeCHHHHH
Confidence 5688999875 345999999999999999999742 2589999998775444
No 22
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=68.67 E-value=15 Score=31.02 Aligned_cols=57 Identities=11% Similarity=0.228 Sum_probs=45.0
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCch--hHHHHHHHHHcCC
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ--RENICQWLTKTGL 84 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~--~~~v~~~L~~~G~ 84 (95)
-.|+|.-.++-+-.+...+.+.++=.|.|...+.+ -+|++||+. .++..++|.+.|-
T Consensus 14 i~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG-Vei~~eG~~~~l~~f~~~L~~~~P 72 (761)
T 3vth_A 14 INIFGIVQGVGFRPFVFNIAQKYNLKGIVYNNSSG-LYIEVEGEEKDIEAFIREIKENPP 72 (761)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCEEEEEEETTE-EEEEEEECHHHHHHHHHHHHHSCC
T ss_pred EEEEEEeCCcCcHHHHHHHHHHcCCeEEEEECCCe-EEEEEEECHHHHHHHHHHHhcCCC
Confidence 35888777888899999999999999999987665 999999984 3455556665543
No 23
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=66.29 E-value=3.4 Score=26.28 Aligned_cols=23 Identities=13% Similarity=0.437 Sum_probs=19.3
Q ss_pred hHHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 72 RENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 72 ~~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
.+.|+++|.+.|+ |.+.|.+.|+
T Consensus 63 A~aV~~~L~~~Gi-~~~ri~~~g~ 85 (118)
T 2hqs_H 63 ANAVKMYLQGKGV-SADQISIVSY 85 (118)
T ss_dssp HHHHHHHHHHTTC-CGGGEEEEEC
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEe
Confidence 4588999999999 8888988774
No 24
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=65.30 E-value=1.8 Score=30.50 Aligned_cols=50 Identities=10% Similarity=0.042 Sum_probs=38.4
Q ss_pred eEEEEecCCC-----cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHH
Q psy4461 25 TLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQ 77 (95)
Q Consensus 25 ~vT~I~Gl~~-----~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~ 77 (95)
.-|+|.||.+ .=+++.+.+.|...+++.|++.+. +....|+|.|...-.+
T Consensus 32 ~KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~id~~---~~rliinG~~~~~~i~ 86 (170)
T 2g2k_A 32 IKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVK---NDRYIVNGSHEANKLQ 86 (170)
T ss_dssp CEEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEECTT---TCCEEEEBCCCHHHHH
T ss_pred cEEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceeecCC---CCEEEEEeeeCHHHHH
Confidence 5578888875 234788899999999999999742 2589999998875544
No 25
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=63.82 E-value=18 Score=22.11 Aligned_cols=29 Identities=24% Similarity=0.239 Sum_probs=22.2
Q ss_pred ceEEEEcCc--hhHHHHHHHHHcCCCCCCcEEEcC
Q psy4461 62 GEVLQLQGD--QRENICQWLTKTGLAKPEQLKVHG 94 (95)
Q Consensus 62 ~~~I~vQGD--~~~~v~~~L~~~G~~p~~~I~vhg 94 (95)
...+++.|+ ..+++.+||.+.|+ .+++-|
T Consensus 68 ~L~v~l~G~~~~~~~ai~~L~~~~v----~vEvlg 98 (100)
T 2qsw_A 68 SLYIQLLGEEQNILAAIEGLRKLRV----ETEVIG 98 (100)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTTC----EEEESS
T ss_pred EEEEEEECCHHHHHHHHHHHHHcCC----EEEEcc
Confidence 368899996 56788899999998 555544
No 26
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=63.66 E-value=12 Score=23.13 Aligned_cols=47 Identities=11% Similarity=0.011 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhcccceEEe-----ecC---CCceEEEEcC---chhHHHHHHHHHcCC
Q psy4461 38 LKKIVRACKKEFACNGTVI-----EHP---EYGEVLQLQG---DQRENICQWLTKTGL 84 (95)
Q Consensus 38 l~~lak~lkk~~acggsv~-----~~~---~~~~~I~vQG---D~~~~v~~~L~~~G~ 84 (95)
-+-+...|.+.|+-..+|- .-. -+...|++.| +..+++.++|.+.|+
T Consensus 33 ~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v 90 (98)
T 3ced_A 33 TEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQV 90 (98)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCC
Confidence 4556666677776644443 311 1236889999 356788999999988
No 27
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=61.56 E-value=4.6 Score=26.36 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=19.2
Q ss_pred hHHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 72 RENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 72 ~~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
.+.|+++|.+.|+ |.+.|.+.|+
T Consensus 87 A~aV~~~L~~~Gi-~~~ri~~~g~ 109 (134)
T 2aiz_P 87 ADAVKGYLAGKGV-DAGKLGTVSY 109 (134)
T ss_dssp HHHHHHHHHHTTC-CGGGEEEEEC
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEE
Confidence 4578899999999 8888988774
No 28
>2nlv_A XISI protein-like; XISI-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.30A {Anabaena variabilis} SCOP: d.326.1.1
Probab=60.07 E-value=5.1 Score=26.35 Aligned_cols=29 Identities=21% Similarity=0.246 Sum_probs=24.1
Q ss_pred EEEEcCchhH-HHHHHHHHcCCCCCCcEEEc
Q psy4461 64 VLQLQGDQRE-NICQWLTKTGLAKPEQLKVH 93 (95)
Q Consensus 64 ~I~vQGD~~~-~v~~~L~~~G~~p~~~I~vh 93 (95)
-|=||=|..+ -|++-|.+.|+ |++.|.+.
T Consensus 68 KIWIq~d~TE~gIa~eLv~~GV-pk~dIVLg 97 (112)
T 2nlv_A 68 KIWLQQNLTDRNPAEELVMMGV-PREDIVLG 97 (112)
T ss_dssp EEEEEEECSSSCHHHHHHHTTC-CGGGEEET
T ss_pred eEEEEeCCccccHHHHHHHcCC-CHHHEEEc
Confidence 6777878766 79999999999 99989763
No 29
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=58.79 E-value=5.5 Score=25.96 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=18.9
Q ss_pred hHHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 72 RENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 72 ~~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
.+.|+++|.+.|+ |.+.|.+.|+
T Consensus 66 A~aV~~~L~~~Gv-~~~ri~~~g~ 88 (138)
T 3cyp_B 66 AYRVMKVLIQYGV-NPNQLSFSSY 88 (138)
T ss_dssp HHHHHHHHHHTTC-CGGGEEEEEC
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEE
Confidence 3468899999999 8888988775
No 30
>2nwv_A XISI protein-like; YP_323822.1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; 1.85A {Anabaena variabilis} SCOP: d.326.1.1
Probab=58.74 E-value=5.4 Score=26.31 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=24.0
Q ss_pred EEEEcCchhH-HHHHHHHHcCCCCCCcEEEc
Q psy4461 64 VLQLQGDQRE-NICQWLTKTGLAKPEQLKVH 93 (95)
Q Consensus 64 ~I~vQGD~~~-~v~~~L~~~G~~p~~~I~vh 93 (95)
-|=||=|..+ -|++.|.+.|+ |++.|.+.
T Consensus 70 KIWIq~d~TE~gIa~eLv~~GV-pk~dIVLg 99 (114)
T 2nwv_A 70 KIYIEEDYTEEGIATELMRLGV-TNNDIVLA 99 (114)
T ss_dssp EEEEEEECCSSCHHHHHHHTTC-CGGGEEET
T ss_pred eEEEEeCCccccHHHHHHHcCC-CHHHEEEc
Confidence 6777778666 79999999999 99989763
No 31
>3d7q_A XISI protein-like; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.30A {Nostoc punctiforme pcc 73102}
Probab=58.43 E-value=5.1 Score=26.35 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=24.0
Q ss_pred EEEEcCchhH-HHHHHHHHcCCCCCCcEEEc
Q psy4461 64 VLQLQGDQRE-NICQWLTKTGLAKPEQLKVH 93 (95)
Q Consensus 64 ~I~vQGD~~~-~v~~~L~~~G~~p~~~I~vh 93 (95)
-|=||=|..+ -|++-|.+.|+ |++.|.+.
T Consensus 68 KIWIq~d~TE~gIa~eLv~~GV-pk~dIVLg 97 (112)
T 3d7q_A 68 KIWIQQNTTEADIALELMEMGI-DKQDIVIG 97 (112)
T ss_dssp EEEEEEECSSCCHHHHHHTTTC-CGGGEEET
T ss_pred eEEEEeCCccccHHHHHHHcCC-CHHHEEEc
Confidence 6777878766 79999999999 99989763
No 32
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=58.41 E-value=55 Score=24.46 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=41.0
Q ss_pred cHHHHHHHHhhhcccceEEeecC-CCceEEEEcCc-hhHHHHHHH-HHcCCCCCCcEEEc
Q psy4461 37 DLKKIVRACKKEFACNGTVIEHP-EYGEVLQLQGD-QRENICQWL-TKTGLAKPEQLKVH 93 (95)
Q Consensus 37 dl~~lak~lkk~~acggsv~~~~-~~~~~I~vQGD-~~~~v~~~L-~~~G~~p~~~I~vh 93 (95)
+.......|+-.|-++|||.+.. .+..||...+. +.+.+.++| ...|+ +...++-.
T Consensus 107 ~~~~~~A~lRGaFLa~GSv~dP~~~YHLEi~~~~~e~a~~l~~ll~~~~~l-~ak~~~Rk 165 (295)
T 3hyi_A 107 DVALFVSFLRGLFLSGGSMTNPRYHYHLEINLFEEETLALTRKSLKDFFNI-NAGIIELR 165 (295)
T ss_dssp SHHHHHHHHHHHHHHHEEECCTTTCCCEEEEESCHHHHHHHHHHHHHHHCC-CCEEEECS
T ss_pred ChHHHHHHHHHHHhcCeecCCCCCceeEEEeeCcHHHHHHHHHHHHHhcCC-CceEEEEC
Confidence 45667789999999999999754 34567776665 667888888 77888 55545443
No 33
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=57.47 E-value=5.2 Score=25.62 Aligned_cols=23 Identities=13% Similarity=0.423 Sum_probs=19.0
Q ss_pred hHHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 72 RENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 72 ~~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
.+.|+++|.+.|+ +.+.|.+.|+
T Consensus 81 A~aV~~~L~~~Gi-~~~ri~~~g~ 103 (129)
T 2kgw_A 81 AKIVADYLVARGV-AGDHIATVGL 103 (129)
T ss_dssp HHHHHHHHHHHTC-CGGGEEEEEC
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEE
Confidence 3478899999998 8888988774
No 34
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=54.94 E-value=11 Score=25.41 Aligned_cols=22 Identities=27% Similarity=0.626 Sum_probs=19.0
Q ss_pred HHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 73 ENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 73 ~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
+.|.++|.+.|+ +.+.|.+.||
T Consensus 112 ~aV~~~L~~~Gv-~~~ri~~~g~ 133 (169)
T 3ldt_A 112 ETMMTFLWANGI-AAKRLKAEGY 133 (169)
T ss_dssp HHHHHHHHHTTC-CTTTEEECCT
T ss_pred HHHHHHHHHcCC-CHHHEEEEEE
Confidence 568999999998 8888998875
No 35
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=52.81 E-value=5.6 Score=25.95 Aligned_cols=22 Identities=14% Similarity=0.599 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 73 ENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 73 ~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
+.|+++|.+.|+ +.+.|.+.|+
T Consensus 82 ~aV~~~L~~~Gv-~~~ri~~~g~ 103 (148)
T 4erh_A 82 QSVVDYLISKGI-PSDKISARGM 103 (148)
T ss_dssp HHHHHHHHTTTC-CGGGEEEEEE
T ss_pred HHHHHHHHHcCC-CHHHEEEEEE
Confidence 789999999998 8888988774
No 36
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=52.03 E-value=24 Score=21.55 Aligned_cols=45 Identities=9% Similarity=0.180 Sum_probs=28.3
Q ss_pred HHHHHHhhhcccceEEe-----ecC---CCceEEEEcCc--hhHHHHHHHHHcCC
Q psy4461 40 KIVRACKKEFACNGTVI-----EHP---EYGEVLQLQGD--QRENICQWLTKTGL 84 (95)
Q Consensus 40 ~lak~lkk~~acggsv~-----~~~---~~~~~I~vQGD--~~~~v~~~L~~~G~ 84 (95)
-+...|.+.|+-..+|- .-. -+...+++.|+ ..+++.++|.+.|+
T Consensus 38 pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v 92 (101)
T 2qrr_A 38 PLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNV 92 (101)
T ss_dssp CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 34455556666544433 311 12368889997 45788899999988
No 37
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=51.19 E-value=14 Score=23.12 Aligned_cols=44 Identities=14% Similarity=0.311 Sum_probs=28.8
Q ss_pred HHHHHhhhcccceEEeec-----C---CCceEEEEcCc--hhHHHHHHHHHcCC
Q psy4461 41 IVRACKKEFACNGTVIEH-----P---EYGEVLQLQGD--QRENICQWLTKTGL 84 (95)
Q Consensus 41 lak~lkk~~acggsv~~~-----~---~~~~~I~vQGD--~~~~v~~~L~~~G~ 84 (95)
+...+-+.|+-..+|-.+ . -+...|++.|| ..+++.+||.+.|+
T Consensus 37 iIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v 90 (106)
T 3dhx_A 37 LLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHV 90 (106)
T ss_dssp HHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCC
Confidence 445555556654444332 1 12368999998 46788999999998
No 38
>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1
Probab=51.15 E-value=8.5 Score=26.08 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 73 ENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 73 ~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
+.|+++|.+.|+ +.+.|.+.||
T Consensus 73 ~aV~~~L~~~Gi-~~~ri~~~G~ 94 (164)
T 1r1m_A 73 YVVANNLVSNGV-PVSRISAVGL 94 (164)
T ss_dssp HHHHHHHHHTTC-CGGGEEEEEC
T ss_pred HHHHHHHHHcCC-CHHHEEEEEE
Confidence 468899999999 8888988775
No 39
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=50.64 E-value=8.8 Score=24.14 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=18.8
Q ss_pred HHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 73 ENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 73 ~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
+.|+++|.+.|+.+.+.|.+.|+
T Consensus 75 ~aV~~~L~~~Gv~~~~ri~~~g~ 97 (123)
T 3oon_A 75 RAIGNYLIKMKVKDKDQILFKGW 97 (123)
T ss_dssp HHHHHHHHHTTSSCGGGEEEEEC
T ss_pred HHHHHHHHHcCCCchHeEEEEEE
Confidence 67899999999933888988764
No 40
>2nvm_A FDXN element excision controlling factor XISI; YP_321976.1, structural genomics, PSI-2, protein structure initiative; 2.19A {Anabaena variabilis atcc 29413} SCOP: d.326.1.1
Probab=50.21 E-value=14 Score=24.82 Aligned_cols=28 Identities=11% Similarity=0.244 Sum_probs=23.4
Q ss_pred EEEEcCchhH-HHHHHHHHcCCCCCCcEEE
Q psy4461 64 VLQLQGDQRE-NICQWLTKTGLAKPEQLKV 92 (95)
Q Consensus 64 ~I~vQGD~~~-~v~~~L~~~G~~p~~~I~v 92 (95)
-|=||=|..+ -|++.|.+.|+ |++.|.+
T Consensus 82 KIWIq~D~TE~gIa~eLv~~GI-Pk~DIVL 110 (126)
T 2nvm_A 82 KIWIEEDSTNLAIVDEMLVAGI-PQTDIIL 110 (126)
T ss_dssp EEEEEECSSTTHHHHHHHHTTC-CGGGEEE
T ss_pred eEEEEeCCchhhHHHHHHHcCC-CHHHEEE
Confidence 6777777666 78999999999 9998876
No 41
>3s06_A Motility protein B; peptidoglycan binding, flagellar rotation, chemotaxis, bacte flagellar motor, membrane, motor protein; 1.80A {Helicobacter pylori} PDB: 3s03_A 3s0h_A 3s02_A
Probab=49.58 E-value=7.4 Score=26.01 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=19.0
Q ss_pred hHHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 72 RENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 72 ~~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
.+.|+++|.+.|+ +.+.|.+.|+
T Consensus 94 A~aV~~~L~~~Gv-~~~ri~~~g~ 116 (166)
T 3s06_A 94 AYRVMKVLIQYGV-NPNQLSFSSY 116 (166)
T ss_dssp HHHHHHHHHHTTC-CGGGEEEEEE
T ss_pred HHHHHHHHHHcCC-ChHhEEEEEE
Confidence 4578999999999 8888988774
No 42
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, ME palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=47.10 E-value=9.4 Score=25.07 Aligned_cols=22 Identities=14% Similarity=0.508 Sum_probs=18.2
Q ss_pred HHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 73 ENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 73 ~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
+.|.++|.+.|+ +.+.|.+.|+
T Consensus 92 ~aV~~~L~~~Gv-~~~ri~~~g~ 113 (149)
T 2k1s_A 92 DSVASALITQGV-DASRIRTQGL 113 (149)
T ss_dssp HHHHHHHHHHTC-CGGGEEEEEC
T ss_pred HHHHHHHHHcCC-CHHHEEEEEE
Confidence 468899999998 8888988774
No 43
>3s0y_A Motility protein B; peptidoglycan binding, flagellar rotation, chemotaxis, bacte flagellar motor, membrane, motor protein; 1.80A {Helicobacter pylori} PDB: 3s0w_A
Probab=45.69 E-value=11 Score=25.77 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=19.0
Q ss_pred hHHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 72 RENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 72 ~~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
...|.++|.+.|+ +.+.|.+.||
T Consensus 121 A~aV~~~L~~~Gv-~~~ri~~~g~ 143 (193)
T 3s0y_A 121 AYRVMKVLIQYGV-NPNQLSFSSY 143 (193)
T ss_dssp HHHHHHHHHHTTC-CGGGEEEEEC
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEE
Confidence 4568999999998 8888988775
No 44
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=45.21 E-value=13 Score=23.40 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=18.7
Q ss_pred hHHHHHHHHH-cCCCCCCcEEEcCC
Q psy4461 72 RENICQWLTK-TGLAKPEQLKVHGF 95 (95)
Q Consensus 72 ~~~v~~~L~~-~G~~p~~~I~vhg~ 95 (95)
.+.|.++|.+ .|+ |.+.|.+.|+
T Consensus 71 A~aV~~~L~~~~Gi-~~~ri~~~g~ 94 (123)
T 3td3_A 71 ANSVKSALVNEYNV-DASRLSTQGF 94 (123)
T ss_dssp HHHHHHHHHHHSCC-CGGGEEEEEC
T ss_pred HHHHHHHHHHhhCC-CHHHEEEEEE
Confidence 4788999998 699 8888888764
No 45
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=43.32 E-value=31 Score=19.86 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=23.3
Q ss_pred eEEEEcCchhHHHHHHHHHcCCCCCCcEEEc
Q psy4461 63 EVLQLQGDQRENICQWLTKTGLAKPEQLKVH 93 (95)
Q Consensus 63 ~~I~vQGD~~~~v~~~L~~~G~~p~~~I~vh 93 (95)
....+.++ ..+..+|.+.|+.|-..|++-
T Consensus 17 ~I~~i~~~--~~~~~rL~~lGi~~G~~v~v~ 45 (77)
T 3e19_A 17 IVVNILGG--HNARQKLVSMGLTPGATIQVL 45 (77)
T ss_dssp EEEEECSH--HHHHHHHHTTTCSTTCEEEEE
T ss_pred EEEEEECC--HHHHHHHHHCCCCCCCEEEEE
Confidence 35567776 688999999999999888763
No 46
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=39.53 E-value=66 Score=19.86 Aligned_cols=72 Identities=19% Similarity=0.324 Sum_probs=42.9
Q ss_pred EEEE-EeeCCceEEEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHH-------HHHHHHcCCCC
Q psy4461 15 LLSL-LRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENI-------CQWLTKTGLAK 86 (95)
Q Consensus 15 iri~-~R~grK~vT~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v-------~~~L~~~G~~p 86 (95)
|++. +|-| ..+.+=--...+-+++....+|.|.+|-.|.-. -+|.+.....++. ..+|++.|+ +
T Consensus 8 itikiqrdg-qeieidirvstgkeleralqelekalaragarn------vqitisaendeqakelleliarllqklgy-k 79 (96)
T 2jvf_A 8 ITIKIQRDG-QEIEIDIRVSTGKELERALQELEKALARAGARN------VQITISAENDEQAKELLELIARLLQKLGY-K 79 (96)
T ss_dssp EEEEEEETT-EEEEEEEECCSSSHHHHHHHHHHHHHHHHTCSE------EEEEEECSSHHHHHHHHHHHHHHHHHHTC-S
T ss_pred EEEEEeeCC-eEEEEEEEEcccHHHHHHHHHHHHHHHhccccc------eEEEEEecChHHHHHHHHHHHHHHHHhCC-C
Confidence 4444 4444 333333334556677777888888777666533 3667766655443 335667799 6
Q ss_pred CCcEEEcC
Q psy4461 87 PEQLKVHG 94 (95)
Q Consensus 87 ~~~I~vhg 94 (95)
.=++.+.|
T Consensus 80 dinvrvng 87 (96)
T 2jvf_A 80 DINVRVNG 87 (96)
T ss_dssp EEEEEEET
T ss_pred ceEEEEcC
Confidence 66777776
No 47
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=39.13 E-value=36 Score=20.32 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=23.4
Q ss_pred EEEEcCchhHHHHHHHHHcCCCCCCcEEE
Q psy4461 64 VLQLQGDQRENICQWLTKTGLAKPEQLKV 92 (95)
Q Consensus 64 ~I~vQGD~~~~v~~~L~~~G~~p~~~I~v 92 (95)
...|.|+....+...|.+.|+.|-..|++
T Consensus 11 I~~i~~~~~~~~~rrL~~mGl~pG~~V~V 39 (83)
T 2lx9_A 11 ITGFSREISPAYRQKLLSLGMLPGSSFNV 39 (83)
T ss_dssp EEECCSSSCHHHHHHHHHSSCCSSSEEEE
T ss_pred EEEEECCCCHHHHHHHHHCCCCCCCEEEE
Confidence 45666765678899999999999888876
No 48
>2gx5_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, GAF domain; HET: PG4 P6G PCG PGE; 1.74A {Bacillus subtilis} PDB: 2b18_A 2hgv_A*
Probab=38.72 E-value=35 Score=23.60 Aligned_cols=50 Identities=10% Similarity=0.048 Sum_probs=34.2
Q ss_pred cccHHHHHHHHhhhcccceEEeecCCCc-eEEEEcCchhHHHHHHHHHcCC
Q psy4461 35 EYDLKKIVRACKKEFACNGTVIEHPEYG-EVLQLQGDQRENICQWLTKTGL 84 (95)
Q Consensus 35 ~~dl~~lak~lkk~~acggsv~~~~~~~-~~I~vQGD~~~~v~~~L~~~G~ 84 (95)
.++++++|+.|...+.|+..|....++- ..-..++-..+.+.+++.+..|
T Consensus 31 ~v~f~eia~vLs~vL~~NvyIvs~~GkiLG~~~~~~~~~~~~~~~~~~~~f 81 (170)
T 2gx5_A 31 PVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQF 81 (170)
T ss_dssp CCCHHHHHHHHHHHHTSEEEEEETTSBEEEEECSSCCCCHHHHHHHHHTBC
T ss_pred CCCHHHHHHHHHHHhCCCEEEEcCCCCEEEEecccccchHHHHHHHhcCcC
Confidence 6899999999999999999999864331 1222233334667776666444
No 49
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=37.44 E-value=81 Score=20.73 Aligned_cols=55 Identities=16% Similarity=0.217 Sum_probs=33.8
Q ss_pred eCCceEEEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCC
Q psy4461 21 NGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGL 84 (95)
Q Consensus 21 ~grK~vT~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~ 84 (95)
+|++.+...+.-..+ .....+.|++.|. ++.+.+ -+.++|.-.+.|.+||.+.|+
T Consensus 116 ~gk~v~~f~t~g~~~--~g~a~~~l~~~l~-~~~~~~------g~~~~~~~~~~i~~Wl~~~~~ 170 (171)
T 4ici_A 116 KGKTVVPFATSGGSS--IGNSATVLKKTYP-DLNWKE------GRLLNRTDEKAIRAWLDVIAV 170 (171)
T ss_dssp TTSEEEEEEECSSCC--SHHHHHHHHHHST-TSEECC------CEECSSCCHHHHHHHHHHHTC
T ss_pred CcCEEEEEEecCCCC--cchHHHHHHHHcC-CCeecc------CeEecCCCHHHHHHHHHHhCC
Confidence 344444444432222 2345566666665 566654 467888878889999998775
No 50
>3khn_A MOTB protein, putative; structural genomics, OMPA-like domain, PSI-2, protein structure initiative; 2.03A {Desulfovibrio vulgaris str}
Probab=37.38 E-value=15 Score=24.76 Aligned_cols=23 Identities=22% Similarity=0.599 Sum_probs=19.1
Q ss_pred hHHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 72 RENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 72 ~~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
...|.++|.+.|+ +.+.|.+.|+
T Consensus 113 A~aV~~~L~~~Gv-~~~ri~~~g~ 135 (174)
T 3khn_A 113 SVNVLRYFLGAGI-EPARLTATGL 135 (174)
T ss_dssp HHHHHHHHHHTTC-CGGGEEEEEE
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEE
Confidence 5678999999999 8888888764
No 51
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=35.41 E-value=40 Score=19.06 Aligned_cols=29 Identities=21% Similarity=0.173 Sum_probs=22.2
Q ss_pred EEEEcCchhHHHHHHHHHcCCCCCCcEEE
Q psy4461 64 VLQLQGDQRENICQWLTKTGLAKPEQLKV 92 (95)
Q Consensus 64 ~I~vQGD~~~~v~~~L~~~G~~p~~~I~v 92 (95)
...|.++....+..+|.+.|+.|-..|++
T Consensus 12 I~~i~~~~~~~~~~rL~~lGl~~G~~v~v 40 (75)
T 2h3j_A 12 ITGYSPAISNGYRQRLFSMGLLPGAALRV 40 (75)
T ss_dssp EEEECTTCCTTHHHHHHHHTCCTTCEEEE
T ss_pred EEEEeCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 55666644456888999999999988876
No 52
>2zf8_A MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus}
Probab=34.79 E-value=18 Score=26.62 Aligned_cols=23 Identities=22% Similarity=0.647 Sum_probs=18.8
Q ss_pred hHHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 72 RENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 72 ~~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
.+.|+++|.+.|+ |.+.|.+.|+
T Consensus 220 A~aV~~~L~~~GI-~~~ri~~~G~ 242 (278)
T 2zf8_A 220 AESLRDYFQSLGL-PEDRIQVQGY 242 (278)
T ss_dssp HHHHHHHHHHHSC-CTTSEECCEE
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEE
Confidence 3468899999999 8888988764
No 53
>2zvy_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell inner membrane, cell membrane, flagellar rotation, membrane; 1.75A {Salmonella typhimurium} PDB: 2zvz_A
Probab=33.37 E-value=32 Score=23.55 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=18.0
Q ss_pred hHHHHHHHHHcCCCCCCcE-EEcCC
Q psy4461 72 RENICQWLTKTGLAKPEQL-KVHGF 95 (95)
Q Consensus 72 ~~~v~~~L~~~G~~p~~~I-~vhg~ 95 (95)
...|.++|.+.|+ +.+.| .+-||
T Consensus 121 A~aV~~~L~~~Gi-~~~ri~~~~G~ 144 (183)
T 2zvy_A 121 ANASRRELVAGGL-DNGKVLRVVGM 144 (183)
T ss_dssp HHHHHHHHHHTTC-CTTCEEEEEEC
T ss_pred HHHHHHHHHHcCC-CHHHhheeEEe
Confidence 3468899999999 77778 67774
No 54
>2l26_A Uncharacterized protein RV0899/MT0922; out membrane protein, membrane protein; NMR {Mycobacterium tuberculosis}
Probab=33.22 E-value=24 Score=25.85 Aligned_cols=23 Identities=13% Similarity=0.423 Sum_probs=18.7
Q ss_pred hHHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 72 RENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 72 ~~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
.+.|.++|.+.|+ +.+.|.+.||
T Consensus 228 A~aV~~~L~~~Gv-~~~ri~~~G~ 250 (284)
T 2l26_A 228 AKIVADYLVARGV-AGDHIATVGL 250 (284)
T ss_dssp HHHHHHHHHHTTC-CTTSEEEEEE
T ss_pred HHHHHHHHHHcCC-ChHHEEEEEE
Confidence 3468899999999 8888988764
No 55
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=32.64 E-value=72 Score=26.79 Aligned_cols=55 Identities=22% Similarity=0.261 Sum_probs=40.8
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCch--hHHHHHHHHHc
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ--RENICQWLTKT 82 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~--~~~v~~~L~~~ 82 (95)
.|+|+-.++-+--+.-.|.+.++=.|.|....+.|-+|++||+. .+...+.|..+
T Consensus 7 ~v~G~VQGVGFRPfv~~lA~~~~l~G~V~N~~~~gV~i~~~g~~~~~~~F~~~l~~~ 63 (772)
T 4g9i_A 7 HVQGIVQAVGFRPFVYRIAHEHNLRGYVKNLGDAGVEIVVEGREEDIEAFIEDLYKK 63 (772)
T ss_dssp EECSSTTTSSCHHHHHHHHHHTTCCCBCCCCSTTCEEEECCSCSTTHHHHHHHHHHS
T ss_pred EEEEEEeCCCccHHHHHHHHHcCCeEEEEECCCCeEEEEEEECHHHHHHHHHHHhhC
Confidence 47788777677778888999999999998765557899999974 33444444443
No 56
>3dfe_A Putative PII-like signaling protein; YP_323533.1, structur genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} SCOP: d.58.5.0
Probab=31.45 E-value=48 Score=21.07 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=12.5
Q ss_pred ccHHHHHHHHhhhcccceEEee
Q psy4461 36 YDLKKIVRACKKEFACNGTVIE 57 (95)
Q Consensus 36 ~dl~~lak~lkk~~acggsv~~ 57 (95)
..++++.+.|.+.=..|-||.+
T Consensus 16 ~kl~~V~~aL~~~Gv~G~TV~~ 37 (111)
T 3dfe_A 16 VLLKKVAKIIEEAGATGYTVVD 37 (111)
T ss_dssp GGHHHHHHHHHHHTCSCCEEEE
T ss_pred HHHHHHHHHHHHCCCCcEEEEe
Confidence 3456666666655555556553
No 57
>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae} SCOP: b.34.1.2
Probab=31.01 E-value=24 Score=20.20 Aligned_cols=30 Identities=17% Similarity=0.135 Sum_probs=22.4
Q ss_pred EEEEcCchhHHHHHHHHHcCCCCCCcEEEc
Q psy4461 64 VLQLQGDQRENICQWLTKTGLAKPEQLKVH 93 (95)
Q Consensus 64 ~I~vQGD~~~~v~~~L~~~G~~p~~~I~vh 93 (95)
...|.++....+..+|.+.|+.|-..|++-
T Consensus 11 I~~i~~~~~~~~~~rL~~lGl~pG~~v~v~ 40 (75)
T 2gcx_A 11 ITGFSRDISPAYRQKLLSLGMLPGSSFHVV 40 (75)
T ss_dssp EECCCSSCCHHHHHHHTTTTCCSSEEEEEC
T ss_pred EEEEeCCCCHHHHHHHHHCCCCCCCEEEEE
Confidence 334555445678999999999998888773
No 58
>2y3m_A Emhofq, protein transport protein HOFQ; secretin, DNA uptake, competence; 2.30A {Aggregatibacter actinomycetemcomitans}
Probab=29.89 E-value=98 Score=20.23 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=37.7
Q ss_pred CCC-cccHHHHHHHHh----hhcccceEEeecCCCceEEEEcCch--hHHHHHHHHHcCCCCCCcEE
Q psy4461 32 LSS-EYDLKKIVRACK----KEFACNGTVIEHPEYGEVLQLQGDQ--RENICQWLTKTGLAKPEQLK 91 (95)
Q Consensus 32 l~~-~~dl~~lak~lk----k~~acggsv~~~~~~~~~I~vQGD~--~~~v~~~L~~~G~~p~~~I~ 91 (95)
++. ..+.+++++.|+ ..++-.|+|.-++. ...+.|.|.. .+++.+++...=. |..+|.
T Consensus 110 ~~L~y~~a~~~~~~l~~~~~~l~~~~g~v~~d~~-tN~liv~~~~~~i~~i~~li~~lD~-p~~QV~ 174 (175)
T 2y3m_A 110 IKLHFAKASEVMKSLTGGSGSLLSPNGSITFDDR-SNLLLIQDEPRSVRNIKKLIKELDK-PIEQLE 174 (175)
T ss_dssp EECSSSCHHHHHHHHHCSSSCSSCTTCEEEEETT-TTEEEEEECHHHHHHHHHHHHHHCC-------
T ss_pred EEEeCCCHHHHHHHHhhCcccccCCCceEEEECC-CCEEEEEcCHHHHHHHHHHHHHhCC-ChhhCc
Confidence 344 567999999999 77777777776532 2488888874 4688888887655 666654
No 59
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=29.82 E-value=56 Score=20.79 Aligned_cols=21 Identities=10% Similarity=0.093 Sum_probs=12.6
Q ss_pred EEEEcCchhHHHHHHHHHcCC
Q psy4461 64 VLQLQGDQRENICQWLTKTGL 84 (95)
Q Consensus 64 ~I~vQGD~~~~v~~~L~~~G~ 84 (95)
+..|+-+..+.|++.|.+.|+
T Consensus 5 ~AIIrp~kl~~vk~AL~~~G~ 25 (116)
T 4aff_A 5 EAIIRPFKLDEVKIALVNAGI 25 (116)
T ss_dssp EEEECGGGHHHHHHHHHHTTC
T ss_pred EEEECHHHHHHHHHHHHHCCC
Confidence 445556666666666666655
No 60
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=28.91 E-value=30 Score=20.30 Aligned_cols=17 Identities=6% Similarity=0.165 Sum_probs=12.0
Q ss_pred HHHHHHHHHcCCCCCCcE
Q psy4461 73 ENICQWLTKTGLAKPEQL 90 (95)
Q Consensus 73 ~~v~~~L~~~G~~p~~~I 90 (95)
..|.++|...|+ +.+.+
T Consensus 15 ~Tl~~LL~~l~~-~~~~v 31 (73)
T 2kl0_A 15 ASVAALMTELDC-TGGHF 31 (73)
T ss_dssp SBHHHHHHHTTC-CSSSC
T ss_pred CcHHHHHHHcCC-CCCcE
Confidence 478888888888 44433
No 61
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=28.86 E-value=61 Score=18.88 Aligned_cols=27 Identities=15% Similarity=0.406 Sum_probs=21.5
Q ss_pred EEEEcCchhHHHHHHHHHcCCCCCCcEEE
Q psy4461 64 VLQLQGDQRENICQWLTKTGLAKPEQLKV 92 (95)
Q Consensus 64 ~I~vQGD~~~~v~~~L~~~G~~p~~~I~v 92 (95)
...|.+ ...+..+|.+.|+.|-..|++
T Consensus 15 I~~i~~--~~~~~~rL~~lGl~pG~~v~V 41 (81)
T 2k5l_A 15 VVKLHG--TGALKRRIMDMGITRGCEIYI 41 (81)
T ss_dssp EEEECS--SSHHHHHHHHHTCCTTCEEEE
T ss_pred EEEEEC--CHHHHHHHHHCCCCCCCEEEE
Confidence 556766 356889999999999888876
No 62
>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: d.206.1.1
Probab=28.37 E-value=1.1e+02 Score=19.24 Aligned_cols=45 Identities=11% Similarity=0.300 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhcccceEEeecC-CCceEEEEcCchhHHHHHHHHHc
Q psy4461 38 LKKIVRACKKEFACNGTVIEHP-EYGEVLQLQGDQRENICQWLTKT 82 (95)
Q Consensus 38 l~~lak~lkk~~acggsv~~~~-~~~~~I~vQGD~~~~v~~~L~~~ 82 (95)
=+++.+.|.+.|+..-++..+. +..+.+.|.|--.+++.+.|...
T Consensus 53 N~ali~~LAk~l~s~V~i~~G~tsR~K~v~I~~~~~~~l~~~L~~~ 98 (104)
T 1jrm_A 53 NREIIKEFSETFGRDVEIVSGQKSRQKTIRIQGMGRDLFLKLVSEK 98 (104)
T ss_dssp HHHHHHHHHHHHSSEEEECSCGGGSEEEEEEESCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCEEEEecCCCCceEEEEcCCCHHHHHHHHHHH
Confidence 4678888888888333443332 22479999997778888888763
No 63
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=26.96 E-value=71 Score=23.62 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=40.6
Q ss_pred EeeCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCCCCC
Q psy4461 19 LRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKP 87 (95)
Q Consensus 19 ~R~grK~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~~p~ 87 (95)
++.+.++|-+|.|=-+ -+.+..+.++|++. .+ +. ..+.+.|.|++-..++|...|+.|.
T Consensus 21 ~~~~m~ki~~v~Gtr~~~~~~a~li~~l~~~---~~-~~------~~~~~tG~h~~~~~~~~~~~~i~~~ 80 (396)
T 3dzc_A 21 QSNAMKKVLIVFGTRPEAIKMAPLVQQLCQD---NR-FV------AKVCVTGQHREMLDQVLELFSITPD 80 (396)
T ss_dssp ---CCEEEEEEECSHHHHHHHHHHHHHHHHC---TT-EE------EEEEECCSSSHHHHHHHHHTTCCCS
T ss_pred HhCCCCeEEEEEeccHhHHHHHHHHHHHHhC---CC-Cc------EEEEEecccHHHHHHHHHhcCCCCc
Confidence 3444568999999776 66788999999874 11 22 2578889998767777777888543
No 64
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=26.53 E-value=71 Score=19.75 Aligned_cols=20 Identities=20% Similarity=-0.011 Sum_probs=10.7
Q ss_pred cHHHHHHHHhhhcccceEEe
Q psy4461 37 DLKKIVRACKKEFACNGTVI 56 (95)
Q Consensus 37 dl~~lak~lkk~~acggsv~ 56 (95)
+++++.++|.+.=..|.|+.
T Consensus 12 ~~~~v~~aL~~~G~~g~Tv~ 31 (112)
T 2eg2_A 12 KLDEVKDALVEIGIGGMTVT 31 (112)
T ss_dssp GHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHHHHHHHCCCCeEEEE
Confidence 45556666665544444444
No 65
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=26.12 E-value=1.3e+02 Score=18.99 Aligned_cols=62 Identities=11% Similarity=0.032 Sum_probs=37.3
Q ss_pred CCceEEEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHH--HcCCCCCCcEEEcCC
Q psy4461 22 GRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLT--KTGLAKPEQLKVHGF 95 (95)
Q Consensus 22 grK~vT~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~--~~G~~p~~~I~vhg~ 95 (95)
.++.+..+.++...-++..+.+.+++. + .-.-.|.=.|+..+.+.+++. +.|+ .++|.++|+
T Consensus 22 ~~~~i~~~G~~~~~Kg~~~li~a~~~l--------~--~~~l~i~G~~~~~~~l~~~~~~~~~~l--~~~v~~~g~ 85 (177)
T 2f9f_A 22 YGDFWLSVNRIYPEKRIELQLEVFKKL--------Q--DEKLYIVGWFSKGDHAERYARKIMKIA--PDNVKFLGS 85 (177)
T ss_dssp CCSCEEEECCSSGGGTHHHHHHHHHHC--------T--TSCEEEEBCCCTTSTHHHHHHHHHHHS--CTTEEEEES
T ss_pred CCCEEEEEeccccccCHHHHHHHHHhC--------C--CcEEEEEecCccHHHHHHHHHhhhccc--CCcEEEeCC
Confidence 356777777787755677788777764 1 111122223455567888777 5566 346777663
No 66
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=25.44 E-value=75 Score=19.84 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=16.1
Q ss_pred EEEEcCchhHHHHHHHHHcCC
Q psy4461 64 VLQLQGDQRENICQWLTKTGL 84 (95)
Q Consensus 64 ~I~vQGD~~~~v~~~L~~~G~ 84 (95)
++.|+-++.+.|++.|.+.|+
T Consensus 9 ~aIIr~~~~~~v~~AL~~~G~ 29 (116)
T 2ns1_B 9 TVIIKPFKLEDVREALSSIGI 29 (116)
T ss_dssp EEEECGGGHHHHHHHHHHTTC
T ss_pred EEEECHHHHHHHHHHHHHCCC
Confidence 677777777788887777776
No 67
>1sse_B AP-1 like transcription factor YAP1; disulfide bond, nuclear export signal, NES, redox- regulation, transcription activator; NMR {Saccharomyces cerevisiae} SCOP: g.78.1.1
Probab=25.35 E-value=25 Score=22.07 Aligned_cols=20 Identities=10% Similarity=0.286 Sum_probs=17.8
Q ss_pred cccHHHHHHHHhhhcccceE
Q psy4461 35 EYDLKKIVRACKKEFACNGT 54 (95)
Q Consensus 35 ~~dl~~lak~lkk~~acggs 54 (95)
.+|+..|+.+|+.+--|+++
T Consensus 49 ~vDId~LC~eLk~kAKCsg~ 68 (86)
T 1sse_B 49 DIDVDGLCSELMAKAKCSER 68 (86)
T ss_dssp SCCHHHHHHHHTTTCCEETT
T ss_pred hcCHHHHHHHHHHhCccCCC
Confidence 78999999999999888874
No 68
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=24.73 E-value=63 Score=19.96 Aligned_cols=20 Identities=15% Similarity=0.034 Sum_probs=9.6
Q ss_pred cHHHHHHHHhhhcccceEEe
Q psy4461 37 DLKKIVRACKKEFACNGTVI 56 (95)
Q Consensus 37 dl~~lak~lkk~~acggsv~ 56 (95)
+++++-++|.+.=..|.|+.
T Consensus 12 ~~~~v~~aL~~~G~~g~Tv~ 31 (112)
T 1hwu_A 12 KLDEVRESLAEVGVTGLTVT 31 (112)
T ss_dssp GHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHHHHHHHCCCCeEEEE
Confidence 35555555555433444443
No 69
>2dsm_A Hypothetical protein YQAI; homodimer, domain swapped dimer, inter-domain beta sheet, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.372.1.1
Probab=24.72 E-value=58 Score=19.66 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=24.2
Q ss_pred ccceEEeecCCCceEEEEcCc--hhHHHHHHHHH-cCC
Q psy4461 50 ACNGTVIEHPEYGEVLQLQGD--QRENICQWLTK-TGL 84 (95)
Q Consensus 50 acggsv~~~~~~~~~I~vQGD--~~~~v~~~L~~-~G~ 84 (95)
+||+-|..+ ...++.-|| +++.+.++|.+ .|+
T Consensus 24 ~cG~EI~~g---d~yl~f~GeiIl~eNl~~Yl~e~~g~ 58 (72)
T 2dsm_A 24 FYGDEVTPV---DDYVIDGGEIILRENLERYLREQLGF 58 (72)
T ss_dssp TTSSCBCTT---SCEEEETTEEEEHHHHHHHHHHTCCC
T ss_pred ccCCeeecC---CeEEEECCeeehHHHHHHHHHHHhCc
Confidence 788877765 246666666 78889999998 687
No 70
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=24.41 E-value=90 Score=20.15 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=20.2
Q ss_pred eEEEEcCchhHHHHHHHHHcCCCCC
Q psy4461 63 EVLQLQGDQRENICQWLTKTGLAKP 87 (95)
Q Consensus 63 ~~I~vQGD~~~~v~~~L~~~G~~p~ 87 (95)
.-|+..||..+.+...|.+.|+...
T Consensus 13 RaVq~~~~y~~~L~~ALkKF~ledp 37 (110)
T 1k8r_B 13 RAVQSRGDYQKTLAIALKKFSLEDA 37 (110)
T ss_dssp EEEECCSCHHHHHHHHHHHHTCCCT
T ss_pred EEeeehhhHHHHHHHHHHHcCCCCh
Confidence 3788889999999999999877543
No 71
>3nb3_A Outer membrane protein A; virus assembly, cementing protein, bacteriophage, SF6, shige beta-barrel, icosahedral, virus; 19.00A {Escherichia coli}
Probab=23.95 E-value=16 Score=26.31 Aligned_cols=28 Identities=14% Similarity=0.517 Sum_probs=0.0
Q ss_pred EcCchhHHHHHHHHHcCCCCCCcEEEcCC
Q psy4461 67 LQGDQRENICQWLTKTGLAKPEQLKVHGF 95 (95)
Q Consensus 67 vQGD~~~~v~~~L~~~G~~p~~~I~vhg~ 95 (95)
|--.-.+.|+++|.+.|+ +.+.|.+.|+
T Consensus 273 LS~~RA~~V~~~L~~~gv-~~~ri~~~g~ 300 (346)
T 3nb3_A 273 LSERRAQSVVDYLISKGI-PADKISARGM 300 (346)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHcCC-ChHHEEEEEe
Confidence 333345689999999998 8888888764
No 72
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=23.85 E-value=66 Score=20.02 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=9.2
Q ss_pred cHHHHHHHHhhhcccceEEe
Q psy4461 37 DLKKIVRACKKEFACNGTVI 56 (95)
Q Consensus 37 dl~~lak~lkk~~acggsv~ 56 (95)
+++++-++|.+.=..|.|+.
T Consensus 12 ~~~~V~~aL~~~G~~g~Tv~ 31 (116)
T 1vfj_A 12 KLNEVLKALFQAEVRGLTLS 31 (116)
T ss_dssp GHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHHHHHHhCCCCeEEEE
Confidence 34455555554433344443
No 73
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=23.68 E-value=67 Score=19.88 Aligned_cols=20 Identities=15% Similarity=0.034 Sum_probs=9.3
Q ss_pred cHHHHHHHHhhhcccceEEe
Q psy4461 37 DLKKIVRACKKEFACNGTVI 56 (95)
Q Consensus 37 dl~~lak~lkk~~acggsv~ 56 (95)
+++++.++|.+.=..|.|+.
T Consensus 14 ~~~~v~~aL~~~G~~g~Tv~ 33 (114)
T 3bzq_A 14 TLDDVKTSLEDAGVLGMTVS 33 (114)
T ss_dssp GHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHHHHHHHCCCCeEEEE
Confidence 34555555554433344443
No 74
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=23.35 E-value=1e+02 Score=19.82 Aligned_cols=38 Identities=18% Similarity=0.345 Sum_probs=24.7
Q ss_pred HHHHHHhhhcccceEEeecCCCceEEEEcCc-hhHHHHHHHHHcCC
Q psy4461 40 KIVRACKKEFACNGTVIEHPEYGEVLQLQGD-QRENICQWLTKTGL 84 (95)
Q Consensus 40 ~lak~lkk~~acggsv~~~~~~~~~I~vQGD-~~~~v~~~L~~~G~ 84 (95)
...+.|++.+. ++.+.+ .+.+||+ ..++|.+||.+.|+
T Consensus 124 ~~~~~l~~~l~-~~~~~~------g~~~~g~~~~~~v~~W~~~~~~ 162 (162)
T 3klb_A 124 NCEKNLHKAYP-DIVWKD------GKLLNGQITRDLVTEWFEKIRL 162 (162)
T ss_dssp HHHHHHHHHCT-TSEECC------CEECCSCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcC-CCEeec------ceEEeCCCCHHHHHHHHHHhCC
Confidence 44555555554 566653 5778885 45579999988763
No 75
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia}
Probab=22.88 E-value=61 Score=19.04 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=21.1
Q ss_pred EEEEcC-chhHHHHHHHHHcCCCCCCcEEE
Q psy4461 64 VLQLQG-DQRENICQWLTKTGLAKPEQLKV 92 (95)
Q Consensus 64 ~I~vQG-D~~~~v~~~L~~~G~~p~~~I~v 92 (95)
...|.- +....+...|.+.|+.|-..|+|
T Consensus 15 I~~i~~~~~~~~~~~rL~~lGl~pG~~v~V 44 (85)
T 3mhx_A 15 VESVQDLHANDAIARRLRELGFVKGEEVRM 44 (85)
T ss_dssp EEEECCSSSSCHHHHHHHHTTCCTTCEEEE
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCEEEE
Confidence 445621 23457889999999999988876
No 76
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A
Probab=22.84 E-value=73 Score=20.40 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=18.6
Q ss_pred CchhHHHHHHHHH-cCCCCCCcEEE
Q psy4461 69 GDQRENICQWLTK-TGLAKPEQLKV 92 (95)
Q Consensus 69 GD~~~~v~~~L~~-~G~~p~~~I~v 92 (95)
|---+.+.+||.+ .|+ |+++|+|
T Consensus 49 GkAN~ali~~LAk~l~V-~ks~V~I 72 (108)
T 1n91_A 49 GQANSHLVKFLGKQFRV-AKSQVVI 72 (108)
T ss_dssp HHHHHHHHHHHHHHTCC-CTTTEEE
T ss_pred ChHHHHHHHHHHHHhCC-ccceEEE
Confidence 6666789999988 688 8888876
No 77
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=22.75 E-value=72 Score=19.83 Aligned_cols=20 Identities=20% Similarity=0.019 Sum_probs=9.9
Q ss_pred cHHHHHHHHhhhcccceEEe
Q psy4461 37 DLKKIVRACKKEFACNGTVI 56 (95)
Q Consensus 37 dl~~lak~lkk~~acggsv~ 56 (95)
+++++.++|.+.=..|.|+.
T Consensus 14 ~~~~v~~aL~~~G~~g~Tv~ 33 (114)
T 2gw8_A 14 KLDDVREALTEIGITGMTVS 33 (114)
T ss_dssp GHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHHHHHHHCCCCeEEEE
Confidence 45555555555434444443
No 78
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=22.64 E-value=88 Score=20.44 Aligned_cols=20 Identities=20% Similarity=-0.002 Sum_probs=9.6
Q ss_pred cHHHHHHHHhhhcccceEEe
Q psy4461 37 DLKKIVRACKKEFACNGTVI 56 (95)
Q Consensus 37 dl~~lak~lkk~~acggsv~ 56 (95)
.++++.++|.+.=..|.|+.
T Consensus 24 k~~~V~~AL~~~G~~G~Tv~ 43 (135)
T 2o66_A 24 RIQQVSSALLKIGIRGVTVS 43 (135)
T ss_dssp GHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHHHHHHHCCCceEEEE
Confidence 34555555555444444443
No 79
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=22.01 E-value=67 Score=20.57 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=13.0
Q ss_pred EEEEcCchhHHHHHHHHHcCC
Q psy4461 64 VLQLQGDQRENICQWLTKTGL 84 (95)
Q Consensus 64 ~I~vQGD~~~~v~~~L~~~G~ 84 (95)
++.|+-+..+.|++.|.+.|+
T Consensus 5 ~AIIrp~kl~~Vk~AL~~~G~ 25 (119)
T 3ncq_A 5 EAIVRAEKFPEVKAALEERGF 25 (119)
T ss_dssp EEEECTTTHHHHHHHHHHTTC
T ss_pred EEEECHHHHHHHHHHHHHCCC
Confidence 455666666666666666665
No 80
>2zov_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell projection, flagellar rotation, inner membrane, membrane; 2.00A {Salmonella typhimurium}
Probab=20.86 E-value=58 Score=22.79 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=17.5
Q ss_pred hHHHHHHHHHcCCCCCCcE-EEcCC
Q psy4461 72 RENICQWLTKTGLAKPEQL-KVHGF 95 (95)
Q Consensus 72 ~~~v~~~L~~~G~~p~~~I-~vhg~ 95 (95)
...|.++|.+.|+ +.+.| .+-||
T Consensus 132 A~aV~~~L~~~Gv-~~~ri~~~~G~ 155 (210)
T 2zov_A 132 ANASRRELVAGGL-DNGKVLRVVGM 155 (210)
T ss_dssp HHHHHHHHHHTTC-CTTCEEEEEEE
T ss_pred HHHHHHHHHHcCC-CHHHeeeEEEe
Confidence 3468899999999 77777 67664
No 81
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.52 E-value=26 Score=19.06 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=15.2
Q ss_pred EcCchhHHHHHHHHHcCCCCCC
Q psy4461 67 LQGDQRENICQWLTKTGLAKPE 88 (95)
Q Consensus 67 vQGD~~~~v~~~L~~~G~~p~~ 88 (95)
+.|...+...+.|.++|| +++
T Consensus 3 ~~~~~~~~~i~~L~~MGF-~~~ 23 (49)
T 1ify_A 3 VTGSEYETMLTEIMSMGY-ERE 23 (49)
T ss_dssp CCSHHHHHHHHHHHHTTC-CHH
T ss_pred CCCccCHHHHHHHHHcCC-CHH
Confidence 356667777788888898 554
No 82
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=20.28 E-value=67 Score=20.54 Aligned_cols=20 Identities=20% Similarity=0.092 Sum_probs=9.3
Q ss_pred cHHHHHHHHhhhcccceEEe
Q psy4461 37 DLKKIVRACKKEFACNGTVI 56 (95)
Q Consensus 37 dl~~lak~lkk~~acggsv~ 56 (95)
+++++-++|.+.=..|.|+.
T Consensus 12 kl~~Vk~AL~~~G~~g~Tv~ 31 (118)
T 3t9z_A 12 KLECVKKALEERGFVGMTVT 31 (118)
T ss_dssp GHHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHHHHCCCceEEEE
Confidence 45555555555433344443
Done!