RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4461
         (95 letters)



>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor
           eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 126

 Score =  120 bits (303), Expect = 1e-37
 Identities = 59/76 (77%), Positives = 70/76 (92%)

Query: 20  RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
           RNGRKTLTTVQG++ +YD KK+V+A KK+FACNGTVIEHPEYGEV+QLQGDQR+NICQ+L
Sbjct: 51  RNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFL 110

Query: 80  TKTGLAKPEQLKVHGF 95
            + GLAK +QLKVHGF
Sbjct: 111 VEIGLAKDDQLKVHGF 126


>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
          Length = 83

 Score = 66.9 bits (164), Expect = 6e-17
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 20 RNGR--KTLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENIC 76
           +GR  K +  + G+   + +L K+    KK+  C G V +      V+++QGD+R+ + 
Sbjct: 12 TSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKD-----GVIEIQGDKRDLLK 66

Query: 77 QWLTKTG 83
            L   G
Sbjct: 67 SLLEAKG 73


>d1xr4a1 c.124.1.2 (A:1-236) Putative citrate lyase alpha chain,
           citF2 {Salmonella typhimurium [TaxId: 90371]}
          Length = 236

 Score = 35.1 bits (81), Expect = 4e-04
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 19  LRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ-RENICQ 77
            R G K +  V    +E   + +  A       +  +IEH + G V Q+     R  + +
Sbjct: 67  FRGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWPLIEHIKNGVVRQIYTSGLRGKLGE 126

Query: 78  WLTKTGLAKPEQLKVHG 94
            ++   +  P Q+  HG
Sbjct: 127 EISAGLMENPVQIHSHG 143


>d2g6ta1 c.147.1.1 (A:1-305) Hypothetical protein CAC2185
           {Clostridium acetobutylicum [TaxId: 1488]}
          Length = 305

 Score = 26.4 bits (58), Expect = 0.55
 Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 5/50 (10%)

Query: 14  LLLSLLRNGRKTLTTVQGLSSEYDLKKIVRACKKEFA-----CNGTVIEH 58
             L L    RK L       S +D K+  +  +         C G ++  
Sbjct: 77  EALELGIPERKILNGKFFFISNFDFKRYCKLIENPITIISDDCWGGLVSS 126


>d1s21a_ d.166.1.4 (A:) AvrPphF ORF2, a type III effector
          {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
          Length = 176

 Score = 25.7 bits (56), Expect = 0.75
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 17/70 (24%)

Query: 22 GRKTLTTVQGLSSE--------------YDLKK---IVRACKKEFACNGTVIEHPEYGEV 64
          G+ TLT++  LSSE              YDL     + R  ++E+  NG    +P  G +
Sbjct: 6  GQYTLTSIHQLSSEERENFLDAHDPMRVYDLNSETSVYRTTQREYVRNGYATGNPNSGAI 65

Query: 65 LQLQGDQREN 74
          + L  + +E+
Sbjct: 66 IALHEELQES 75


>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
          {Escherichia coli [TaxId: 562]}
          Length = 455

 Score = 23.7 bits (50), Expect = 5.8
 Identities = 3/38 (7%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 30 QGLSSEYDLKKIVRACK---KEFACNGTVIEHPEYGEV 64
           G+ +  +  ++  A     ++       I   +  ++
Sbjct: 45 VGVLTAEEQAQLEEALNVLLEDVRARPQQILESDAEDI 82


>d1pg5b1 d.58.2.1 (B:11-104) Aspartate carbamoyltransferase
          {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
          Length = 94

 Score = 22.7 bits (49), Expect = 6.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 51 CNGTVIEHPEYGEVLQL 67
           NGTVI+H   G    +
Sbjct: 6  KNGTVIDHIPAGRAFAV 22


>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling
          factor, TRCF {Escherichia coli [TaxId: 562]}
          Length = 211

 Score = 23.1 bits (49), Expect = 6.8
 Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 3/34 (8%)

Query: 22 GRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 55
           R  + T      EYD   +  A  +E    G V
Sbjct: 4  RRLAVKTF---VREYDSMVVREAILREILRGGQV 34


>d1j5ya2 d.94.2.1 (A:68-174) Putative transcriptional regulator
          TM1602, C-terminal domain {Thermotoga maritima [TaxId:
          2336]}
          Length = 107

 Score = 22.7 bits (49), Expect = 7.3
 Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 4/18 (22%)

Query: 51 CNGTV----IEHPEYGEV 64
            G +    +EHP YGE+
Sbjct: 27 NGGRIVDVIVEHPVYGEI 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0597    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 351,724
Number of extensions: 13779
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 13
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)